Grid time

from datetime import timedelta
import numpy as np
from opendrift.readers import reader_global_landmask
from opendrift.readers import reader_netCDF_CF_generic
from opendrift.models.oceandrift import OceanDrift

# Seeding at a grid at regular interval
o = OceanDrift(loglevel=20)  # Set loglevel to 0 for debug information

reader_norkyst = reader_netCDF_CF_generic.Reader(o.test_data_folder() +
    '16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc')
14:16:27 INFO    opendrift.models.basemodel:507: OpenDriftSimulation initialised (version 1.11.2 / v1.11.2-69-gb16198b)
14:16:27 INFO    opendrift.readers.reader_netCDF_CF_generic:102: Opening dataset: /root/project/tests/test_data/16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc
14:16:27 INFO    opendrift.readers.reader_netCDF_CF_generic:314: Detected dimensions: {'x': 'X', 'y': 'Y', 'z': 'depth', 'time': 'time'}

Landmask

reader_landmask = reader_global_landmask.Reader()

o.add_reader([reader_landmask, reader_norkyst])

Seeding some particles

lons = np.linspace(4.4, 4.6, 10)
lats = np.linspace(60.0, 60.1, 10)
lons, lats = np.meshgrid(lons, lats)
lons = lons.ravel()
lats = lats.ravel()

Seed oil elements on a grid at regular time interval

start_time = reader_norkyst.start_time
time_step = timedelta(hours=6)
num_steps = 10
for i in range(num_steps+1):
    o.seed_elements(lons, lats, radius=0, number=100,
                    time=start_time + i*time_step)
14:16:32 INFO    opendrift.models.basemodel.environment:245: Fallback values will be used for the following variables which have no readers:
14:16:32 INFO    opendrift.models.basemodel.environment:248:    sea_surface_height: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    x_wind: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    y_wind: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    upward_sea_water_velocity: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    ocean_vertical_diffusivity: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    sea_surface_wave_significant_height: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    sea_surface_wave_stokes_drift_x_velocity: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    sea_surface_wave_stokes_drift_y_velocity: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    sea_surface_wave_period_at_variance_spectral_density_maximum: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    sea_surface_swell_wave_to_direction: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    sea_surface_swell_wave_peak_period_from_variance_spectral_density: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    sea_surface_swell_wave_significant_height: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    sea_surface_wind_wave_to_direction: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    sea_surface_wind_wave_mean_period: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    sea_surface_wind_wave_significant_height: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    surface_downward_x_stress: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    surface_downward_y_stress: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    turbulent_kinetic_energy: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    turbulent_generic_length_scale: 0.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    ocean_mixed_layer_thickness: 50.000000
14:16:32 INFO    opendrift.models.basemodel.environment:248:    sea_floor_depth_below_sea_level: 10000.000000

Running model for 60 hours

o.run(steps=60*4, time_step=900, time_step_output=3600)
14:16:32 INFO    opendrift.models.basemodel:885: Using existing reader for land_binary_mask
14:16:32 INFO    opendrift.models.basemodel:896: All points are in ocean
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14:16:33 WARNING opendrift.readers.basereader.structured:324: Data block from /root/project/tests/test_data/16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc not large enough to cover element positions within timestep. Buffer size (11) must be increased. See `Variables.set_buffer_size`.
/root/project/opendrift/readers/interpolation/interpolators.py:17: RuntimeWarning: overflow encountered in cast
  data[mask] = np.finfo(np.float64).min
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14:16:33 WARNING opendrift.readers.basereader.structured:324: Data block from /root/project/tests/test_data/16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc not large enough to cover element positions within timestep. Buffer size (11) must be increased. See `Variables.set_buffer_size`.
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14:16:33 WARNING opendrift.readers.basereader.structured:324: Data block from /root/project/tests/test_data/16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc not large enough to cover element positions within timestep. Buffer size (11) must be increased. See `Variables.set_buffer_size`.
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14:16:34 WARNING opendrift.readers.basereader.structured:324: Data block from /root/project/tests/test_data/16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc not large enough to cover element positions within timestep. Buffer size (11) must be increased. See `Variables.set_buffer_size`.
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14:16:34 WARNING opendrift.readers.basereader.structured:324: Data block from /root/project/tests/test_data/16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc not large enough to cover element positions within timestep. Buffer size (11) must be increased. See `Variables.set_buffer_size`.
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14:16:34 WARNING opendrift.readers.basereader.structured:324: Data block from /root/project/tests/test_data/16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc not large enough to cover element positions within timestep. Buffer size (11) must be increased. See `Variables.set_buffer_size`.
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14:16:34 WARNING opendrift.readers.basereader.structured:324: Data block from /root/project/tests/test_data/16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc not large enough to cover element positions within timestep. Buffer size (11) must be increased. See `Variables.set_buffer_size`.
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14:16:34 WARNING opendrift.readers.basereader.structured:324: Data block from /root/project/tests/test_data/16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc not large enough to cover element positions within timestep. Buffer size (11) must be increased. See `Variables.set_buffer_size`.
14:16:34 INFO    opendrift.models.basemodel:1985: 2015-11-17 07:00:00 - step 125 of 240 - 600 active elements (0 deactivated)
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14:16:35 INFO    opendrift.models.basemodel:1985: 2015-11-17 12:00:00 - step 145 of 240 - 700 active elements (0 deactivated)
14:16:35 WARNING opendrift.readers.basereader.structured:324: Data block from /root/project/tests/test_data/16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc not large enough to cover element positions within timestep. Buffer size (11) must be increased. See `Variables.set_buffer_size`.
14:16:35 INFO    opendrift.models.basemodel:1985: 2015-11-17 12:15:00 - step 146 of 240 - 700 active elements (0 deactivated)
14:16:35 WARNING opendrift.readers.basereader.structured:324: Data block from /root/project/tests/test_data/16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc not large enough to cover element positions within timestep. Buffer size (11) must be increased. See `Variables.set_buffer_size`.
14:16:35 INFO    opendrift.models.basemodel:1985: 2015-11-17 12:30:00 - step 147 of 240 - 700 active elements (0 deactivated)
14:16:35 WARNING opendrift.readers.basereader.structured:324: Data block from /root/project/tests/test_data/16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc not large enough to cover element positions within timestep. Buffer size (11) must be increased. See `Variables.set_buffer_size`.
14:16:35 INFO    opendrift.models.basemodel:1985: 2015-11-17 12:45:00 - step 148 of 240 - 699 active elements (1 deactivated)
14:16:35 WARNING opendrift.readers.basereader.structured:324: Data block from /root/project/tests/test_data/16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc not large enough to cover element positions within timestep. Buffer size (11) must be increased. See `Variables.set_buffer_size`.
14:16:35 INFO    opendrift.models.basemodel:1985: 2015-11-17 13:00:00 - step 149 of 240 - 699 active elements (1 deactivated)
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14:16:37 INFO    opendrift.models.basemodel:2146: Removing 100 unseeded elements from history array

Print and plot results

print(o)
o.animation(fast=True)
===========================
--------------------
Reader performance:
--------------------
global_landmask
 0:00:00.0  total
 0:00:00.0  preparing
 0:00:00.0  reading
 0:00:00.0  masking
--------------------
/root/project/tests/test_data/16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc
 0:00:01.8  total
 0:00:00.0  preparing
 0:00:00.3  reading
 0:00:00.1  interpolation
 0:00:00.0  interpolation_time
 0:00:01.4  rotating vectors
 0:00:00.0  masking
--------------------
Performance:
   10.1 total time
    5.6 configuration
    0.0 preparing main loop
      0.0 moving elements to ocean
    4.4 main loop
      0.1 updating elements
    0.0 cleaning up
--------------------
===========================
Model:  OceanDrift     (OpenDrift version 1.11.2)
        888 active Lagrangian3DArray particles  (112 deactivated, 100 scheduled)
-------------------
Environment variables:
  -----
  land_binary_mask
     1) global_landmask
  -----
  x_sea_water_velocity
  y_sea_water_velocity
     1) /root/project/tests/test_data/16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc
  -----
Readers not added for the following variables:
  ocean_mixed_layer_thickness
  ocean_vertical_diffusivity
  sea_floor_depth_below_sea_level
  sea_surface_height
  sea_surface_swell_wave_peak_period_from_variance_spectral_density
  sea_surface_swell_wave_significant_height
  sea_surface_swell_wave_to_direction
  sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment
  sea_surface_wave_period_at_variance_spectral_density_maximum
  sea_surface_wave_significant_height
  sea_surface_wave_stokes_drift_x_velocity
  sea_surface_wave_stokes_drift_y_velocity
  sea_surface_wind_wave_mean_period
  sea_surface_wind_wave_significant_height
  sea_surface_wind_wave_to_direction
  surface_downward_x_stress
  surface_downward_y_stress
  turbulent_generic_length_scale
  turbulent_kinetic_energy
  upward_sea_water_velocity
  x_wind
  y_wind

Discarded readers:

Time:
        Start: 2015-11-16 00:00:00 UTC
        Present: 2015-11-18 12:00:00 UTC
        Calculation steps: 240 * 0:15:00 - total time: 2 days, 12:00:00
        Output steps: 61 * 1:00:00
===========================

14:16:37 WARNING opendrift.models.basemodel:2356: Plotting fast. This will make your plots less accurate.
/opt/conda/envs/opendrift/lib/python3.11/site-packages/cartopy/mpl/geoaxes.py:1683: UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored
  result = super().scatter(*args, **kwargs)
14:16:39 INFO    opendrift.models.basemodel:4547: Saving animation to /root/project/docs/source/gallery/animations/example_grid_time_0.gif...
14:17:07 INFO    opendrift.models.basemodel:2980: Time to make animation: 0:00:29.758458
../_images/example_grid_time_0.gif

Total running time of the script: (0 minutes 40.756 seconds)

Gallery generated by Sphinx-Gallery