Drift at different depths

from datetime import datetime, timedelta
import numpy as np
from opendrift.models.oceandrift import OceanDrift

o = OceanDrift(loglevel=20)  # Set loglevel to 0 for debug information
17:13:53 INFO    opendrift:513: OpenDriftSimulation initialised (version 1.14.2 / v1.14.2-88-gf09b7bd)

Using live data from Thredds

o.add_readers_from_list([
    'https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be'])

Adding some diffusion

o.set_config('drift:horizontal_diffusivity', 10)  # m2/s

Seed 1000 elements at random depths

z = -np.random.rand(2000)*50
o.seed_elements(lon=4.8, lat=60.0, z=z, radius=0, number=2000,
                time=datetime.now())

print(o)
17:13:53 INFO    opendrift.models.basemodel.environment:206: Adding a global landmask from GSHHG
17:13:57 INFO    opendrift.models.basemodel.environment:229: Fallback values will be used for the following variables which have no readers:
17:13:57 INFO    opendrift.models.basemodel.environment:232:    x_sea_water_velocity: 0.000000
17:13:57 INFO    opendrift.models.basemodel.environment:232:    y_sea_water_velocity: 0.000000
17:13:57 INFO    opendrift.models.basemodel.environment:232:    sea_surface_height: 0.000000
17:13:57 INFO    opendrift.models.basemodel.environment:232:    x_wind: 0.000000
17:13:57 INFO    opendrift.models.basemodel.environment:232:    y_wind: 0.000000
17:13:57 INFO    opendrift.models.basemodel.environment:232:    upward_sea_water_velocity: 0.000000
17:13:57 INFO    opendrift.models.basemodel.environment:232:    ocean_vertical_diffusivity: 0.000000
17:13:57 INFO    opendrift.models.basemodel.environment:232:    sea_surface_wave_significant_height: 0.000000
17:13:57 INFO    opendrift.models.basemodel.environment:232:    sea_surface_wave_stokes_drift_x_velocity: 0.000000
17:13:57 INFO    opendrift.models.basemodel.environment:232:    sea_surface_wave_stokes_drift_y_velocity: 0.000000
17:13:57 INFO    opendrift.models.basemodel.environment:232:    ocean_mixed_layer_thickness: 50.000000
17:13:57 INFO    opendrift.models.basemodel.environment:232:    sea_floor_depth_below_sea_level: 10000.000000
===========================
Model:  OceanDrift     (OpenDrift version 1.14.2)
        0 active Lagrangian3DArray particles  (0 deactivated, 2000 scheduled)
-------------------
Environment variables:
  -----
  land_binary_mask
     1) global_landmask
  -----
Readers not added for the following variables:
  ocean_mixed_layer_thickness
  ocean_vertical_diffusivity
  sea_floor_depth_below_sea_level
  sea_surface_height
  sea_surface_wave_significant_height
  sea_surface_wave_stokes_drift_x_velocity
  sea_surface_wave_stokes_drift_y_velocity
  upward_sea_water_velocity
  x_sea_water_velocity
  x_wind
  y_sea_water_velocity
  y_wind
---
Lazy readers:
  LazyReader: https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be

Discarded readers:
===========================

Running model

o.run(duration=timedelta(hours=24), time_step=1800)
17:13:57 INFO    opendrift:1732: Skipping environment variable ocean_vertical_diffusivity because of condition ['drift:vertical_mixing', 'is', False]
17:13:57 INFO    opendrift:1732: Skipping environment variable ocean_mixed_layer_thickness because of condition ['drift:vertical_mixing', 'is', False]
17:13:57 INFO    opendrift:1743: Storing previous values of element property lon because of condition (('general:coastline_action', 'in', ['stranding', 'previous']), 'or', ('general:seafloor_action', 'in', ['previous']))
17:13:57 INFO    opendrift:1743: Storing previous values of element property lat because of condition (('general:coastline_action', 'in', ['stranding', 'previous']), 'or', ('general:seafloor_action', 'in', ['previous']))
17:13:57 INFO    opendrift:1751: Storing previous values of environment variable sea_surface_height because of condition ['drift:vertical_advection', 'is', True]
17:13:57 INFO    opendrift:899: Using existing reader for land_binary_mask
17:13:57 INFO    opendrift:928: All points are in ocean
17:13:57 INFO    opendrift:2035: 2025-07-11 17:13:53.466005 - step 1 of 48 - 2000 active elements (0 deactivated)
17:13:57 INFO    opendrift.readers:61: Opening file with xr.open_dataset
17:13:59 INFO    opendrift.readers.reader_netCDF_CF_generic:332: Detected dimensions: {'x': 'X', 'y': 'Y', 'z': 'depth', 'time': 'time'}
17:14:03 INFO    opendrift:2035: 2025-07-11 17:43:53.466005 - step 2 of 48 - 2000 active elements (0 deactivated)
17:14:03 INFO    opendrift:2035: 2025-07-11 18:13:53.466005 - step 3 of 48 - 2000 active elements (0 deactivated)
17:14:05 INFO    opendrift:2035: 2025-07-11 18:43:53.466005 - step 4 of 48 - 2000 active elements (0 deactivated)
17:14:05 INFO    opendrift:2035: 2025-07-11 19:13:53.466005 - step 5 of 48 - 2000 active elements (0 deactivated)
17:14:06 INFO    opendrift:2035: 2025-07-11 19:43:53.466005 - step 6 of 48 - 2000 active elements (0 deactivated)
17:14:06 INFO    opendrift:2035: 2025-07-11 20:13:53.466005 - step 7 of 48 - 2000 active elements (0 deactivated)
17:14:08 INFO    opendrift:2035: 2025-07-11 20:43:53.466005 - step 8 of 48 - 2000 active elements (0 deactivated)
17:14:08 INFO    opendrift:2035: 2025-07-11 21:13:53.466005 - step 9 of 48 - 2000 active elements (0 deactivated)
17:14:10 INFO    opendrift:2035: 2025-07-11 21:43:53.466005 - step 10 of 48 - 2000 active elements (0 deactivated)
17:14:10 INFO    opendrift:2035: 2025-07-11 22:13:53.466005 - step 11 of 48 - 2000 active elements (0 deactivated)
17:14:11 INFO    opendrift:2035: 2025-07-11 22:43:53.466005 - step 12 of 48 - 2000 active elements (0 deactivated)
17:14:11 INFO    opendrift:2035: 2025-07-11 23:13:53.466005 - step 13 of 48 - 2000 active elements (0 deactivated)
17:14:13 INFO    opendrift:2035: 2025-07-11 23:43:53.466005 - step 14 of 48 - 2000 active elements (0 deactivated)
17:14:13 INFO    opendrift:2035: 2025-07-12 00:13:53.466005 - step 15 of 48 - 2000 active elements (0 deactivated)
17:14:14 INFO    opendrift:2035: 2025-07-12 00:43:53.466005 - step 16 of 48 - 2000 active elements (0 deactivated)
17:14:14 INFO    opendrift:2035: 2025-07-12 01:13:53.466005 - step 17 of 48 - 2000 active elements (0 deactivated)
17:14:15 INFO    opendrift:2035: 2025-07-12 01:43:53.466005 - step 18 of 48 - 2000 active elements (0 deactivated)
17:14:15 INFO    opendrift:2035: 2025-07-12 02:13:53.466005 - step 19 of 48 - 2000 active elements (0 deactivated)
17:14:16 INFO    opendrift:2035: 2025-07-12 02:43:53.466005 - step 20 of 48 - 2000 active elements (0 deactivated)
17:14:16 INFO    opendrift:2035: 2025-07-12 03:13:53.466005 - step 21 of 48 - 2000 active elements (0 deactivated)
17:14:18 INFO    opendrift:2035: 2025-07-12 03:43:53.466005 - step 22 of 48 - 2000 active elements (0 deactivated)
17:14:18 INFO    opendrift:2035: 2025-07-12 04:13:53.466005 - step 23 of 48 - 2000 active elements (0 deactivated)
17:14:19 INFO    opendrift:2035: 2025-07-12 04:43:53.466005 - step 24 of 48 - 2000 active elements (0 deactivated)
17:14:19 INFO    opendrift:2035: 2025-07-12 05:13:53.466005 - step 25 of 48 - 2000 active elements (0 deactivated)
17:14:21 INFO    opendrift:2035: 2025-07-12 05:43:53.466005 - step 26 of 48 - 2000 active elements (0 deactivated)
17:14:21 INFO    opendrift:2035: 2025-07-12 06:13:53.466005 - step 27 of 48 - 2000 active elements (0 deactivated)
17:14:22 INFO    opendrift:2035: 2025-07-12 06:43:53.466005 - step 28 of 48 - 2000 active elements (0 deactivated)
17:14:22 INFO    opendrift:2035: 2025-07-12 07:13:53.466005 - step 29 of 48 - 2000 active elements (0 deactivated)
17:14:23 INFO    opendrift:2035: 2025-07-12 07:43:53.466005 - step 30 of 48 - 2000 active elements (0 deactivated)
17:14:23 INFO    opendrift:2035: 2025-07-12 08:13:53.466005 - step 31 of 48 - 2000 active elements (0 deactivated)
17:14:24 INFO    opendrift:2035: 2025-07-12 08:43:53.466005 - step 32 of 48 - 2000 active elements (0 deactivated)
17:14:24 INFO    opendrift:2035: 2025-07-12 09:13:53.466005 - step 33 of 48 - 2000 active elements (0 deactivated)
17:14:26 INFO    opendrift:2035: 2025-07-12 09:43:53.466005 - step 34 of 48 - 2000 active elements (0 deactivated)
17:14:26 INFO    opendrift:2035: 2025-07-12 10:13:53.466005 - step 35 of 48 - 2000 active elements (0 deactivated)
17:14:27 INFO    opendrift:2035: 2025-07-12 10:43:53.466005 - step 36 of 48 - 2000 active elements (0 deactivated)
17:14:27 INFO    opendrift:2035: 2025-07-12 11:13:53.466005 - step 37 of 48 - 2000 active elements (0 deactivated)
17:14:28 INFO    opendrift:2035: 2025-07-12 11:43:53.466005 - step 38 of 48 - 2000 active elements (0 deactivated)
17:14:28 INFO    opendrift:2035: 2025-07-12 12:13:53.466005 - step 39 of 48 - 2000 active elements (0 deactivated)
17:14:30 INFO    opendrift:2035: 2025-07-12 12:43:53.466005 - step 40 of 48 - 2000 active elements (0 deactivated)
17:14:30 INFO    opendrift:2035: 2025-07-12 13:13:53.466005 - step 41 of 48 - 2000 active elements (0 deactivated)
17:14:31 INFO    opendrift:2035: 2025-07-12 13:43:53.466005 - step 42 of 48 - 2000 active elements (0 deactivated)
17:14:31 INFO    opendrift:2035: 2025-07-12 14:13:53.466005 - step 43 of 48 - 2000 active elements (0 deactivated)
17:14:33 INFO    opendrift:2035: 2025-07-12 14:43:53.466005 - step 44 of 48 - 2000 active elements (0 deactivated)
17:14:33 INFO    opendrift:2035: 2025-07-12 15:13:53.466005 - step 45 of 48 - 2000 active elements (0 deactivated)
17:14:34 INFO    opendrift:2035: 2025-07-12 15:43:53.466005 - step 46 of 48 - 2000 active elements (0 deactivated)
17:14:34 INFO    opendrift:2035: 2025-07-12 16:13:53.466005 - step 47 of 48 - 2000 active elements (0 deactivated)
17:14:35 INFO    opendrift:2035: 2025-07-12 16:43:53.466005 - step 48 of 48 - 2000 active elements (0 deactivated)
<xarray.Dataset> Size: 8MB
Dimensions:                                   (trajectory: 2000, time: 49)
Coordinates:
  * trajectory                                (trajectory) int64 16kB 0 ... 1999
  * time                                      (time) datetime64[ns] 392B 2025...
Data variables: (12/21)
    status                                    (trajectory, time) float32 392kB ...
    moving                                    (trajectory, time) float32 392kB ...
    age_seconds                               (trajectory, time) float32 392kB ...
    origin_marker                             (trajectory, time) float32 392kB ...
    lon                                       (trajectory, time) float32 392kB ...
    lat                                       (trajectory, time) float32 392kB ...
    ...                                        ...
    upward_sea_water_velocity                 (trajectory, time) float32 392kB ...
    sea_surface_wave_significant_height       (trajectory, time) float32 392kB ...
    sea_surface_wave_stokes_drift_x_velocity  (trajectory, time) float32 392kB ...
    sea_surface_wave_stokes_drift_y_velocity  (trajectory, time) float32 392kB ...
    sea_floor_depth_below_sea_level           (trajectory, time) float32 392kB ...
    land_binary_mask                          (trajectory, time) float32 392kB ...
Attributes: (12/119)
    Conventions:                                                           CF...
    standard_name_vocabulary:                                              CF...
    featureType:                                                           tr...
    title:                                                                 Op...
    summary:                                                               Ou...
    keywords:                                                              tr...
    ...                                                                    ...
    geospatial_lon_units:                                                  de...
    geospatial_lon_resolution:                                             point
    runtime:                                                               0:...
    geospatial_vertical_min:                                               -5...
    geospatial_vertical_max:                                               0.0
    geospatial_vertical_positive:                                          up


Plot results with lines and particles colored by depth

print(o)
o.plot(linecolor='z', buffer=.1, show_elements=False)
o.animation(color='z', buffer=.1)
OpenDrift - OceanDrift 2025-07-11 17:13 to 2025-07-12 17:13 UTC (49 steps)
===========================
--------------------
Reader performance:
--------------------
global_landmask
 0:00:00.0  total
 0:00:00.0  preparing
 0:00:00.0  reading
 0:00:00.0  masking
--------------------
https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
 0:00:34.9  total
 0:00:00.0  preparing
 0:00:34.6  reading
 0:00:00.5  interpolation
 0:00:00.0  interpolation_time
 0:00:00.3  rotating vectors
 0:00:00.0  masking
--------------------
Performance:
   42.5 total time
    3.9 configuration
    0.0 preparing main loop
      0.0 moving elements to ocean
   38.5 main loop
      0.1 updating elements
    0.0 cleaning up
--------------------
===========================
Model:  OceanDrift     (OpenDrift version 1.14.2)
        2000 active Lagrangian3DArray particles  (0 deactivated, 0 scheduled)
-------------------
Environment variables:
  -----
  land_binary_mask
     1) global_landmask
  -----
  sea_floor_depth_below_sea_level
  sea_surface_height
  upward_sea_water_velocity
  x_sea_water_velocity
  x_wind
  y_sea_water_velocity
  y_wind
     1) https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
  -----
Readers not added for the following variables:
  sea_surface_wave_significant_height
  sea_surface_wave_stokes_drift_x_velocity
  sea_surface_wave_stokes_drift_y_velocity

Discarded readers:

Time:
        Start: 2025-07-11 17:13:53.466005 UTC
        Present: 2025-07-12 17:13:53.466005 UTC
        Calculation steps: 48 * 0:30:00 - total time: 1 day, 0:00:00
        Output steps: 49 * 0:30:00
===========================

17:15:36 INFO    opendrift:4553: Saving animation to /root/project/docs/source/gallery/animations/example_depth_0.gif...
17:16:08 INFO    opendrift:2994: Time to make animation: 0:00:33.174178
../_images/example_depth_0.gif

Total running time of the script: (2 minutes 23.767 seconds)

Gallery generated by Sphinx-Gallery