ChemicalDrift - Transport and fate of organic compounds

from opendrift.readers import reader_netCDF_CF_generic
from opendrift.models.chemicaldrift import ChemicalDrift
from opendrift.readers.reader_constant import Reader as ConstantReader
from datetime import timedelta, datetime
import matplotlib.pyplot as plt
import numpy as np


o = ChemicalDrift(loglevel=0, seed=0)

# Norkyst
reader_norkyst = reader_netCDF_CF_generic.Reader('https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be')
mixed_layer = ConstantReader({'ocean_mixed_layer_thickness': 40})
o.add_reader([reader_norkyst,mixed_layer])

o.set_config('drift:vertical_mixing', True)
o.set_config('vertical_mixing:diffusivitymodel', 'windspeed_Large1994')
o.set_config('chemical:particle_diameter',30.e-6)  # m
o.set_config('chemical:particle_diameter_uncertainty',5.e-6) # m
o.set_config('chemical:sediment:resuspension_critvel',0.15) # m/s
o.set_config('chemical:transformations:volatilization', True)
o.set_config('chemical:transformations:degradation', True)
o.set_config('chemical:transformations:degradation_mode', 'OverallRateConstants')
o.set_config('seed:LMM_fraction',.9)
o.set_config('seed:particle_fraction',.1)
o.set_config('general:coastline_action', 'previous')

o.init_chemical_compound("Phenanthrene")

# Modify half-life times with unrealistic values for this demo
o.set_config('chemical:transformations:t12_W_tot', 6.) # hours
o.set_config('chemical:transformations:t12_S_tot', 12.) # hours

o.list_configspec()

09:38:57 DEBUG   opendrift.config:168: Adding 18 config items from __init__
09:38:57 DEBUG   opendrift.config:178:   Overwriting config item readers:max_number_of_fails
09:38:57 DEBUG   opendrift.config:168: Adding 13 config items from __init__
09:38:57 INFO    opendrift:507: OpenDriftSimulation initialised (version 1.14.2 / v1.14.2-21-g950aeec)
09:38:57 DEBUG   opendrift.config:168: Adding 17 config items from oceandrift
09:38:57 DEBUG   opendrift.config:178:   Overwriting config item seed:z
09:38:57 DEBUG   opendrift.config:168: Adding 71 config items from chemicaldrift
09:38:57 INFO    opendrift.readers:61: Opening file with xr.open_dataset
09:38:57 DEBUG   gribapi.bindings:58: eccodes lib search: trying to find binary wheel
09:38:57 DEBUG   gribapi.bindings:65: eccodes lib search: looking in /opt/conda/envs/opendrift/lib/python3.13/site-packages/eccodes.libs
09:38:57 DEBUG   gribapi.bindings:65: eccodes lib search: looking in /opt/conda/envs/opendrift/lib/python3.13/site-packages/eccodes/.dylibs
09:38:57 DEBUG   gribapi.bindings:65: eccodes lib search: looking in /opt/conda/envs/opendrift/lib/python3.13/site-packages/eccodes
09:38:57 DEBUG   gribapi.bindings:91: eccodes lib search: did not find library from wheel; try to find as separate lib
09:38:57 DEBUG   gribapi.bindings:99: eccodes lib search: findlibs returned /opt/conda/envs/opendrift/lib/libeccodes.so
09:39:03 DEBUG   opendrift.readers.reader_netCDF_CF_generic:128: Finding coordinate variables.
09:39:03 DEBUG   opendrift.readers.reader_netCDF_CF_generic:143: Parsing CF grid mapping dictionary: {'grid_mapping_name': 'polar_stereographic', 'straight_vertical_longitude_from_pole': np.float64(70.0), 'latitude_of_projection_origin': np.float64(90.0), 'standard_parallel': np.float64(60.0), 'false_easting': np.float64(3192800.0), 'false_northing': np.float64(1784000.0), 'semi_major_axis': np.float64(6378137.0), 'semi_minor_axis': np.float64(6356752.3142), 'proj4': '+proj=stere +lat_0=90 +lat_ts=60 +lon_0=70 +x_0=3192800 +y_0=1784000 +a=6378137 +b=6356752.3142 +units=m +no_defs +type=crs'}
09:39:03 DEBUG   pyproj:40: PROJ_ERROR: proj_create: several objects matching this name: Krovak (Greenwich), Equal Earth Greenwich, Laborde Grid (Greenwich), Modified Krovak (Greenwich), Krovak East North (Greenwich), Modified Krovak East North (Greenwich), ...
09:39:03 INFO    opendrift.readers.reader_netCDF_CF_generic:332: Detected dimensions: {'x': 'X', 'y': 'Y', 'z': 'depth', 'time': 'time'}
09:39:03 DEBUG   opendrift.readers.reader_netCDF_CF_generic:368: Skipped variables without standard_name: ['angle', 'tke', 'ubar', 'vbar']
09:39:03 DEBUG   opendrift.readers.basereader.variables:612: Setting buffer size 25 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 5 m/s and time span of 1:00:00
09:39:03 DEBUG   opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
09:39:03 DEBUG   opendrift.readers.basereader.variables:567: Adding variable mapping: ['x_wind', 'y_wind'] -> wind_speed
09:39:03 DEBUG   opendrift.readers.basereader.variables:567: Adding variable mapping: ['x_sea_water_velocity', 'y_sea_water_velocity'] -> sea_water_speed
09:39:03 DEBUG   opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
09:39:03 DEBUG   opendrift.models.basemodel.environment:312: Added reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:39:03 DEBUG   opendrift.models.basemodel.environment:312: Added reader constant_reader
environment:constant:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:sea_surface_height [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_surface_height [0] float min: None, max: None [None] Fallback value for s...
environment:constant:x_wind         [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:x_wind         [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:y_wind         [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:y_wind         [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:fallback:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:constant:sea_floor_depth_below_sea_level [None] float min: -20, max: 12000 [None] Depth of seafloor...
environment:fallback:sea_floor_depth_below_sea_level [10000] float min: -20, max: 12000 [None] Depth of seafloor...
environment:constant:ocean_vertical_diffusivity [None] float min: 0, max: 1 [None] Use constant value f...
environment:fallback:ocean_vertical_diffusivity [0.0001] float min: 0, max: 1 [None] Fallback value for o...
environment:constant:sea_water_temperature [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_temperature [10] float min: None, max: None [None] Fallback value for s...
environment:constant:sea_water_salinity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_salinity [34] float min: None, max: None [None] Fallback value for s...
environment:constant:upward_sea_water_velocity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:upward_sea_water_velocity [0] float min: None, max: None [None] Fallback value for u...
environment:constant:spm            [None] float min: None, max: None [None] Use constant value f...
environment:fallback:spm            [1] float min: None, max: None [None] Fallback value for s...
environment:constant:ocean_mixed_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:ocean_mixed_layer_thickness [50] float min: None, max: None [None] Fallback value for o...
environment:constant:active_sediment_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:active_sediment_layer_thickness [0.03] float min: None, max: None [None] Fallback value for a...
environment:constant:doc            [None] float min: None, max: None [None] Use constant value f...
environment:fallback:doc            [0.0] float min: None, max: None [None] Fallback value for d...
environment:constant:sea_water_ph_reported_on_total_scale [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_ph_reported_on_total_scale [8.1] float min: None, max: None [None] Fallback value for s...
environment:constant:pH_sediment    [None] float min: None, max: None [None] Use constant value f...
environment:fallback:pH_sediment    [6.9] float min: None, max: None [None] Fallback value for p...
general:use_auto_landmask           [True] bool   A built-in GSHHG glo...
drift:current_uncertainty           [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:current_uncertainty_uniform   [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:max_speed                     [2.0] float min: 0, max: inf [seconds] Typical maximum spee...
readers:max_number_of_fails         [1] int   min: 0, max: 1000000.0 [number] Readers are discarde...
general:simulation_name             [] str   min length 0, max length 64 Name of simulation...
general:coastline_action            [previous] enum  ['none', 'stranding', 'previous'] None means that obje...
general:coastline_approximation_precision [0.001] float min: 0.0001, max: 0.005 [degrees] The precision of the...
general:time_step_minutes           [60] float min: 0.01, max: 1440 [minutes] Calculation time ste...
general:time_step_output_minutes    [None] float min: 1, max: 1440 [minutes] Output time step, i....
seed:ocean_only                     [True] bool   If True, elements se...
seed:number                         [1] int   min: 1, max: 100000000 [1] The number of elemen...
drift:max_age_seconds               [None] float min: 0, max: inf [seconds] Elements will be dea...
drift:advection_scheme              [euler] enum  ['euler', 'runge-kutta', 'runge-kutta4'] Numerical advection ...
drift:horizontal_diffusivity        [0] float min: 0, max: 100000 [m2/s] Add horizontal diffu...
drift:profiles_depth                [50] float min: 0, max: None [meters] Environment profiles...
drift:wind_uncertainty              [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:relative_wind                 [False] bool   If True, wind drift ...
drift:deactivate_north_of           [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_south_of           [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_east_of            [None] float min: -360, max: 360 [degrees] Elements are deactiv...
drift:deactivate_west_of            [None] float min: -360, max: 360 [degrees] Elements are deactiv...
seed:origin_marker                  [0] float min: None, max: None [None] An integer kept cons...
seed:z                              [0] float min: -10000, max: 0 [m] Depth below sea leve...
seed:wind_drift_factor              [0.02] float min: None, max: None [1] Elements at surface ...
seed:current_drift_factor           [1] float min: None, max: None [1] Elements are moved w...
seed:terminal_velocity              [0.0] float min: None, max: None [m/s] Terminal rise/sinkin...
seed:diameter                       [0.0] float min: None, max: None [m] Seeding value of dia...
seed:density                        [2650.0] float min: None, max: None [kg/m^3] Seeding value of den...
seed:specie                         [0] float min: None, max: None [] Seeding value of spe...
seed:mass                           [1000.0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded                  [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_water            [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_sediment         [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_volatilized               [0] float min: None, max: None [ug] Seeding value of mas...
drift:vertical_advection            [True] bool   Advect elements with...
drift:vertical_advection_at_surface [True] bool   If vertical advectio...
drift:vertical_mixing               [True] bool   Activate vertical mi...
drift:vertical_mixing_at_surface    [True] bool   If vertical mixing i...
vertical_mixing:timestep            [60] float min: 0.1, max: 3600 [seconds] Time step used for i...
vertical_mixing:diffusivitymodel    [windspeed_Large1994] enum  ['environment', 'stepfunction', 'windspeed_Sundby1983', 'windspeed_Large1994', 'gls_tke', 'constant'] Algorithm/source use...
vertical_mixing:background_diffusivity [1.2e-05] float min: 0, max: 1 [m2s-1] Background diffusivi...
vertical_mixing:TSprofiles          [False] bool   Update T and S profi...
drift:wind_drift_depth              [0.1] float min: 0, max: 10 [meters] The direct wind drif...
drift:stokes_drift                  [True] bool   Advection elements w...
drift:stokes_drift_profile          [Phillips] enum  ['monochromatic', 'exponential', 'Phillips', 'windsea_swell'] Algorithm to calcula...
drift:use_tabularised_stokes_drift  [False] bool   If True, Stokes drif...
drift:tabularised_stokes_drift_fetch [25000] enum  ['5000', '25000', '50000'] The fetch length whe...
general:seafloor_action             [lift_to_seafloor] enum  ['none', 'lift_to_seafloor', 'deactivate', 'previous'] "deactivate": elemen...
drift:truncate_ocean_model_below_m  [None] float min: 0, max: 10000 [m] Ocean model data are...
seed:seafloor                       [False] bool   Elements are seeded ...
chemical:transfer_setup             [organics] enum  ['Sandnesfj_Al', 'metals', '137Cs_rev', 'custom', 'organics'] ...
chemical:dynamic_partitioning       [True] bool   Toggle dynamic parti...
chemical:slowly_fraction            [False] bool   ...
chemical:irreversible_fraction      [False] bool   ...
chemical:dissolved_diameter         [0] float min: 0, max: 0.0001 [m] ...
chemical:particle_diameter          [3e-05] float min: 0, max: 0.0001 [m] ...
chemical:particle_concentration_half_depth [20] float min: 0, max: 100 [m] ...
chemical:doc_concentration_half_depth [1000] float min: 0, max: 1000 [m] ...
chemical:particle_diameter_uncertainty [5e-06] float min: 0, max: 0.0001 [m] ...
seed:LMM_fraction                   [0.9] float min: 0, max: 1 [] ...
seed:particle_fraction              [0.1] float min: 0, max: 1 [] ...
chemical:species:LMM                [True] bool   Toggle LMM species...
chemical:species:LMMcation          [False] bool   ...
chemical:species:LMManion           [False] bool   ...
chemical:species:Colloid            [False] bool   ...
chemical:species:Humic_colloid      [False] bool   ...
chemical:species:Polymer            [False] bool   ...
chemical:species:Particle_reversible [True] bool   ...
chemical:species:Particle_slowly_reversible [False] bool   ...
chemical:species:Particle_irreversible [False] bool   ...
chemical:species:Sediment_reversible [True] bool   ...
chemical:species:Sediment_slowly_reversible [False] bool   ...
chemical:species:Sediment_irreversible [False] bool   ...
chemical:transformations:Kd         [2.0] float min: 0, max: 1000000000.0 [m3/kg] ...
chemical:transformations:S0         [0.0] float min: 0, max: 100 [PSU] parameter controllin...
chemical:transformations:Dc         [1.16e-05] float min: 0, max: 1000000.0 [] ...
chemical:transformations:slow_coeff [0] float min: 0, max: 1000000.0 [] ...
chemical:transformations:volatilization [True] bool   Chemical is evaporat...
chemical:transformations:degradation [True] bool   Chemical mass is deg...
chemical:transformations:degradation_mode [OverallRateConstants] enum  ['OverallRateConstants'] ...
chemical:transformations:dissociation [nondiss] enum  ['nondiss', 'acid', 'base', 'amphoter'] ...
chemical:transformations:LogKOW     [4.505] float min: -3, max: 10 [Log L/Kg] ...
chemical:transformations:TrefKOW    [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_KOC_Sed [-24900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:DeltaH_KOC_DOM [-25900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:Setchenow  [0.3026] float min: 0, max: 1 [L/mol] ...
chemical:transformations:pKa_acid   [-1] float min: -1, max: 14 [] ...
chemical:transformations:pKa_base   [-1] float min: -1, max: 14 [] ...
chemical:transformations:KOC_DOM    [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:KOC_sed    [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:fOC_SPM    [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:fOC_sed    [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:aggregation_rate [0] float min: 0, max: 1 [s-1] ...
chemical:transformations:t12_W_tot  [6.0] float min: 1, max: None [hours] half life in water, ...
chemical:transformations:Tref_kWt   [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kWt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:t12_S_tot  [12.0] float min: 1, max: None [hours] half life in sedimen...
chemical:transformations:Tref_kSt   [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kSt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:MolWt      [178.226] float min: 50, max: 1000 [amu] molecular weight...
chemical:transformations:Henry      [4.294e-05] float min: None, max: None [atm m3 mol-1] Henry constant...
chemical:transformations:Vpress     [0.0222] float min: None, max: None [Pa] Vapour pressure...
chemical:transformations:Tref_Vpress [25.0] float min: None, max: None [C] Vapour pressure ref ...
chemical:transformations:DeltaH_Vpress [71733.0] float min: -100000.0, max: 115000.0 [J/mol] Enthalpy of volatili...
chemical:transformations:Solub      [1.09] float min: None, max: None [g/m3] Solubility...
chemical:transformations:Tref_Solub [25.0] float min: None, max: None [C] Solubility ref temp...
chemical:transformations:DeltaH_Solub [34800.0] float min: -100000.0, max: 100000.0 [J/mol] Enthalpy of solubili...
chemical:sediment:mixing_depth      [0.03] float min: 0, max: 100 [m] ...
chemical:sediment:density           [2600] float min: 0, max: 10000 [kg/m3] ...
chemical:sediment:effective_fraction [0.9] float min: 0, max: 1 [] ...
chemical:sediment:corr_factor       [0.1] float min: 0, max: 10 [] ...
chemical:sediment:porosity          [0.6] float min: 0, max: 1 [] ...
chemical:sediment:layer_thickness   [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth  [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth [1] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_critvel [0.15] float min: 0, max: 1 [m/s] ...
chemical:sediment:burial_rate       [3e-05] float min: 0, max: 10 [m/year] ...
chemical:sediment:buried_leaking_rate [0] float min: 0, max: 10 [s-1] ...
chemical:compound                   [Phenanthrene] enum  ['Naphthalene', 'Phenanthrene', 'Fluoranthene', 'Benzo-a-anthracene', 'Benzo-a-pyrene', 'Dibenzo-ah-anthracene', 'C1-Naphthalene', 'Acenaphthene', 'Acenaphthylene', 'Fluorene', 'Dibenzothiophene', 'C2-Naphthalene', 'Anthracene', 'C3-Naphthalene', 'C1-Dibenzothiophene', 'Pyrene', 'C1-Phenanthrene', 'C2-Dibenzothiophene', 'C2-Phenanthrene', 'Benzo-b-fluoranthene', 'Chrysene', 'C3-Dibenzothiophene', 'C3-Phenanthrene', 'Benzo-k-fluoranthene', 'Benzo-ghi-perylene', 'Indeno-123cd-pyrene', 'Copper', 'Cadmium', 'Chromium', 'Lead', 'Vanadium', 'Zinc', 'Nickel', None] ...

Seeding 500 lagrangian elements each representign 2mg og target chemical

td=datetime.today()
time = td - timedelta(days=10)

latseed= 57.6;   lonseed= 10.6 # Skagen

ntraj=500
iniz=np.random.rand(ntraj) * -10. # seeding the chemicals in the upper 10m

o.seed_elements(lonseed, latseed, z=iniz, radius=2000,number=ntraj,time=time, mass=2e3)

39:03 DEBUG   opendrift.models.chemicaldrift:891: Partitioning coefficients (Tref,freshwater)
39:03 DEBUG   opendrift.models.chemicaldrift:892: KOC_sed: 12953.922406542462 L/KgOC
39:03 DEBUG   opendrift.models.chemicaldrift:893: KOC_SPM: 12953.922406542462 L/KgOC
39:03 DEBUG   opendrift.models.chemicaldrift:894: KOC_DOM: 3004.29439651874 L/KgOC
39:03 DEBUG   opendrift.models.chemicaldrift:906: Kd_sed: 647.6961203271231 L/Kg
39:03 DEBUG   opendrift.models.chemicaldrift:907: Kd_SPM: 647.6961203271231 L/Kg
39:03 DEBUG   opendrift.models.chemicaldrift:908: Kd_DOM: 1580.2588525688573 L/Kg
39:03 DEBUG   opendrift.models.chemicaldrift:1125: nspecies: 5
39:03 DEBUG   opendrift.models.chemicaldrift:1126: Transfer rates:
 [[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
00000000e+00]
 [4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
16887646e-11]
 [0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]]
39:03 DEBUG   opendrift.models.chemicaldrift:530: Initial partitioning:
39:03 DEBUG   opendrift.models.chemicaldrift:532:       449   0 LMM
39:03 DEBUG   opendrift.models.chemicaldrift:532:         0   1 Humic colloid
39:03 DEBUG   opendrift.models.chemicaldrift:532:        51   2 Particle reversible
39:03 DEBUG   opendrift.models.chemicaldrift:532:         0   3 Sediment reversible
39:03 DEBUG   opendrift.models.chemicaldrift:532:         0   4 Sediment slowly reversible
39:03 INFO    opendrift.models.basemodel.environment:206: Adding a global landmask from GSHHG
39:03 DEBUG   opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
39:07 DEBUG   opendrift.models.basemodel.environment:312: Added reader global_landmask
39:07 INFO    opendrift.models.basemodel.environment:229: Fallback values will be used for the following variables which have no readers:
39:07 INFO    opendrift.models.basemodel.environment:232:    ocean_vertical_diffusivity: 0.000100
39:07 INFO    opendrift.models.basemodel.environment:232:    spm: 1.000000
39:07 INFO    opendrift.models.basemodel.environment:232:    active_sediment_layer_thickness: 0.030000
39:07 INFO    opendrift.models.basemodel.environment:232:    doc: 0.000000
39:07 INFO    opendrift.models.basemodel.environment:232:    sea_water_ph_reported_on_total_scale: 8.100000
39:07 INFO    opendrift.models.basemodel.environment:232:    pH_sediment: 6.900000
39:07 DEBUG   opendrift:100: Changed mode from Mode.Config to Mode.Ready

Running model

o.run(steps=48*2, time_step=1800, time_step_output=1800)

39:07 DEBUG   opendrift:100: Changed mode from Mode.Ready to Mode.Run
39:07 DEBUG   opendrift:1813:
------------------------------------------------------
Software and hardware:
  OpenDrift version 1.14.2
  Platform: Linux, 6.8.0-1024-aws
0 GB memory
processors (x86_64)
  NumPy version 2.2.6
  SciPy version 1.15.2
  Matplotlib version 3.10.3
  NetCDF4 version 1.7.2
  Xarray version 2025.4.0
  ADIOS (adios_db) version 1.2.5
  Copernicusmarine version 2.1.1
  Python version 3.13.3 | packaged by conda-forge | (main, Apr 14 2025, 20:44:03) [GCC 13.3.0]
------------------------------------------------------

39:07 DEBUG   opendrift:1827: No output file is specified, neglecting export_buffer_length
39:07 DEBUG   opendrift:1945: Finalizing environment and preparing readers for simulation coverage ([np.float64(4.69639997080836), np.float64(54.43270917325407), np.float64(16.516793922624256), np.float64(60.761642023034995)]) and time (2025-05-18 09:39:03.420424 to 2025-05-20 09:39:03.420424)
39:07 DEBUG   opendrift.models.basemodel.environment:168:    Preparing https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be for extent [np.float64(4.69639997080836), np.float64(54.43270917325407), np.float64(16.516793922624256), np.float64(60.761642023034995)]
39:07 DEBUG   opendrift.readers.basereader.structured:153: Clearing cache for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be before starting new simulation
39:07 DEBUG   opendrift.readers.basereader.variables:612: Setting buffer size 11 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 2 m/s and time span of 1:00:00
39:07 DEBUG   opendrift.readers.basereader.variables:553: Nothing more to prepare for https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:07 DEBUG   opendrift.models.basemodel.environment:168:    Preparing constant_reader for extent [np.float64(4.69639997080836), np.float64(54.43270917325407), np.float64(16.516793922624256), np.float64(60.761642023034995)]
39:07 DEBUG   opendrift.readers.basereader.variables:553: Nothing more to prepare for constant_reader
39:07 DEBUG   opendrift.models.basemodel.environment:168:    Preparing global_landmask for extent [np.float64(4.69639997080836), np.float64(54.43270917325407), np.float64(16.516793922624256), np.float64(60.761642023034995)]
39:07 DEBUG   opendrift.readers.basereader.variables:553: Nothing more to prepare for global_landmask
39:07 DEBUG   opendrift:2032: Initial self.result, size Frozen({'trajectory': 500, 'time': 97})
39:07 INFO    opendrift:911: Using existing reader for land_binary_mask
39:07 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:07 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:07 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:07 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:07 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:07 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:07 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:07 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:07 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:07 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:07 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:07 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:07 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:07 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:07 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:07 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:07 INFO    opendrift:940: All points are in ocean
39:07 INFO    opendrift.models.chemicaldrift:352: Number of species: 5
39:07 INFO    opendrift.models.chemicaldrift:354:   0 LMM
39:07 INFO    opendrift.models.chemicaldrift:354:   1 Humic colloid
39:07 INFO    opendrift.models.chemicaldrift:354:   2 Particle reversible
39:07 INFO    opendrift.models.chemicaldrift:354:   3 Sediment reversible
39:07 INFO    opendrift.models.chemicaldrift:354:   4 Sediment slowly reversible
39:07 INFO    opendrift.models.chemicaldrift:357: transfer setup: organics
39:07 INFO    opendrift.models.chemicaldrift:359: nspecies: 5
39:07 INFO    opendrift.models.chemicaldrift:360: Transfer rates:
 [[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
00000000e+00]
 [4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
16887646e-11]
 [0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]]
39:07 DEBUG   opendrift:872: to be seeded: 500, already seeded 0
39:07 DEBUG   opendrift:890: Released 500 new elements.
39:07 DEBUG   opendrift:2101: ======================================================================
39:07 INFO    opendrift:2102: 2025-05-18 09:39:03.420424 - step 1 of 96 - 500 active elements (0 deactivated)
39:07 DEBUG   opendrift:2108: 0 elements scheduled.
39:07 DEBUG   opendrift:2110: ======================================================================
39:07 DEBUG   opendrift:2121:                57.54622268676758 <- latitude -> 57.648128509521484
39:07 DEBUG   opendrift:2121:                10.507113456726074 <- longitude -> 10.706080436706543
39:07 DEBUG   opendrift:2121:                -9.988470077514648 <- z -> -0.04695476219058037
39:07 DEBUG   opendrift:2122: ---------------------------------
39:07 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:07 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:07 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:07 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:07 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:07 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:07 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:07 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 09:00:00 (before)
                2025-05-18 10:00:00 (after)
39:10 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:10 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:10 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:10 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:10 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:10 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:10 DEBUG   opendrift.readers.basereader.structured:292: Fetched env-block (size 37x35x7) for time before (2025-05-18 09:00:00)
39:12 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:12 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:12 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:12 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:12 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:12 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:12 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 37x35x7) for time after (2025-05-18 10:00:00)
39:12 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 09:00:00) in space  (linearNDFast)
39:12 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:12 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 10:00:00) in space  (linearNDFast)
39:12 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:12 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 09:00:00, weight 0.35) and
                      after (2025-05-18 10:00:00, weight 0.65) in time
39:12 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:12 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4929004930107 and -59.29392585004879 degrees.
39:12 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4929004930107 and -59.29392585004879 degrees.
39:12 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:12 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:12 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:12 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:12 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:12 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:12 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:12 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:12 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:12 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:12 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:12 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:12 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:12 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:12 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:12 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:12 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:12 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:12 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:12 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:12 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:12 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:12 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:12 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:12 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:12 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:12 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:12 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:12 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:12 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.301186 (min) 0.0305092 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.069881 (min) 0.0617981 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.214382 (min) -0.189187 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -4.52219 (min) -3.88383 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -8.72462 (min) -8.40149 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.53077 (min) 23.882 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 11.9494 (min) 12.3222 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.298 (min) 27.4293 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000308189 (min) -1.70238e-05 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:12 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:12 DEBUG   opendrift:699: No elements hit coastline.
39:12 DEBUG   opendrift:730: No elements hit seafloor.
39:12 DEBUG   opendrift:1745: No elements to deactivate
39:12 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:12 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:12 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:12 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
39:12 DEBUG   opendrift.models.chemicaldrift:1473: old species: [2]
39:12 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0]
39:12 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[0. 0. 0. 0. 0.]
 [0. 0. 0. 0. 0.]
 [1. 0. 0. 0. 0.]
 [0. 0. 0. 0. 0.]
 [0. 0. 0. 0. 0.]]
39:12 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:12 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:12 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:12 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:12 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.06846013791748638
39:12 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:12 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:12 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:12 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:12 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:12 DEBUG   opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 43 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 42 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 41 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 38 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 39 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:12 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:12 DEBUG   opendrift.models.oceandrift:524: 40 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 47 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 39 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 49 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 59 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 49 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 38 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
39:12 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:12 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:12 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:12 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:12 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:12 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:12 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(450), np.int64(0), np.int64(47), np.int64(3), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:12 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:12 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:12 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:12 DEBUG   opendrift:2101: ======================================================================
39:12 INFO    opendrift:2102: 2025-05-18 10:09:03.420424 - step 2 of 96 - 500 active elements (0 deactivated)
39:12 DEBUG   opendrift:2108: 0 elements scheduled.
39:12 DEBUG   opendrift:2110: ======================================================================
39:12 DEBUG   opendrift:2121:                57.54523580964203 <- latitude -> 57.64846712316199
39:12 DEBUG   opendrift:2121:                10.506563008717427 <- longitude -> 10.697604875182726
39:12 DEBUG   opendrift:2121:                -20.43519401550293 <- z -> -0.25029508296091296
39:12 DEBUG   opendrift:2122: ---------------------------------
39:12 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:12 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:12 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:12 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:12 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:12 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:12 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:12 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 10:00:00 (before)
                2025-05-18 11:00:00 (after)
39:14 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:14 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:14 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:14 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:14 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:14 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:14 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 38x34x7) for time after (2025-05-18 11:00:00)
39:14 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 10:00:00) in space  (linearNDFast)
39:14 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:14 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 11:00:00) in space  (linearNDFast)
39:14 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:14 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 10:00:00, weight 0.85) and
                      after (2025-05-18 11:00:00, weight 0.15) in time
39:14 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:14 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49344807765356 and -59.302406192754866 degrees.
39:14 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49344807765356 and -59.302406192754866 degrees.
39:14 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:14 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:14 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:14 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:14 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:14 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:14 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:14 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:14 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:14 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:14 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:14 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:14 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:14 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:14 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:14 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:14 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:14 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:14 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.266992 (min) 0.23897 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.115844 (min) 0.0885246 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.244025 (min) -0.220015 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -4.11085 (min) -3.27604 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -8.61181 (min) -8.05202 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.51481 (min) 23.5352 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 10.0638 (min) 12.3323 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.389 (min) 30.7444 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000350779 (min) 2.39535e-05 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:14 DEBUG   opendrift:699: No elements hit coastline.
39:14 DEBUG   opendrift:735: Lifting 16 elements to seafloor.
39:14 DEBUG   opendrift:1745: No elements to deactivate
39:14 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:14 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:14 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:14 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 37
39:14 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
39:14 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
39:14 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[ 0.  0.  0. 37.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 1.  0.  0.  3.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
39:14 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:14 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:14 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:14 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:14 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.06433443096429303
39:14 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:14 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:14 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:14 DEBUG   opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:544: 37 elements reached seafloor, interacting with bottom
39:14 DEBUG   opendrift:735: Lifting 37 elements to seafloor.
39:14 DEBUG   opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:14 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:14 DEBUG   opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 40 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 38 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 42 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 46 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 39 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 38 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 42 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 41 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:14 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:14 DEBUG   opendrift.models.oceandrift:524: 50 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 43 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 39 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 36 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 40 elements penetrated seafloor, lifting up
39:14 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:14 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:14 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:14 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:14 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(413), np.int64(0), np.int64(45), np.int64(42), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:14 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:14 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:14 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:14 DEBUG   opendrift:2101: ======================================================================
39:14 INFO    opendrift:2102: 2025-05-18 10:39:03.420424 - step 3 of 96 - 500 active elements (0 deactivated)
39:14 DEBUG   opendrift:2108: 0 elements scheduled.
39:14 DEBUG   opendrift:2110: ======================================================================
39:14 DEBUG   opendrift:2121:                57.54452689110829 <- latitude -> 57.64885825762942
39:14 DEBUG   opendrift:2121:                10.505937979246333 <- longitude -> 10.696258073651391
39:14 DEBUG   opendrift:2121:                -21.91277835757762 <- z -> -0.3879361440498994
39:14 DEBUG   opendrift:2122: ---------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:14 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:14 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:14 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 10:00:00 (before)
                2025-05-18 11:00:00 (after)
39:14 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 10:00:00) in space  (linearNDFast)
39:14 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:14 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 11:00:00) in space  (linearNDFast)
39:14 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:14 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 10:00:00, weight 0.35) and
                      after (2025-05-18 11:00:00, weight 0.65) in time
39:14 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:14 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.30375298972925 degrees.
39:14 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.30375298972925 degrees.
39:14 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:14 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:14 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:14 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:14 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:14 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:14 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:14 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:14 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:14 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:14 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:14 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:14 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:14 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:14 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:14 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:14 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:14 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:14 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.235329 (min) 0.22526 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.14847 (min) 0.12892 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.278998 (min) -0.256709 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -4.09911 (min) -3.59835 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -7.81039 (min) -7.28022 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 23.6395 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.94533 (min) 12.3526 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.2634 (min) 31.034 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000343387 (min) 7.65591e-05 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:14 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:14 DEBUG   opendrift:699: No elements hit coastline.
39:14 DEBUG   opendrift:735: Lifting 57 elements to seafloor.
39:14 DEBUG   opendrift:1745: No elements to deactivate
39:14 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:14 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:14 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:14 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 35
39:14 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
39:14 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
39:14 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[ 0.  0.  0. 72.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 1.  0.  0.  5.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
39:14 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:14 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:14 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:14 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:14 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.054606247797935416
39:14 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:14 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:14 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:14 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:544: 35 elements reached seafloor, interacting with bottom
39:14 DEBUG   opendrift:735: Lifting 35 elements to seafloor.
39:14 DEBUG   opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:14 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:14 DEBUG   opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 42 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 39 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 41 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 40 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:14 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:14 DEBUG   opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 41 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
39:14 DEBUG   opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
39:14 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:14 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:14 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:14 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:14 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(378), np.int64(0), np.int64(43), np.int64(79), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:14 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:14 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:14 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:14 DEBUG   opendrift:2101: ======================================================================
39:14 INFO    opendrift:2102: 2025-05-18 11:09:03.420424 - step 4 of 96 - 500 active elements (0 deactivated)
39:14 DEBUG   opendrift:2108: 0 elements scheduled.
39:14 DEBUG   opendrift:2110: ======================================================================
39:14 DEBUG   opendrift:2121:                57.54434309835209 <- latitude -> 57.650394826040475
39:14 DEBUG   opendrift:2121:                10.50593797924633 <- longitude -> 10.690764868355409
39:14 DEBUG   opendrift:2121:                -22.033451080322266 <- z -> -0.2518034546014618
39:14 DEBUG   opendrift:2122: ---------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:14 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:14 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:14 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:14 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 11:00:00 (before)
                2025-05-18 12:00:00 (after)
39:16 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:16 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:16 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:16 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:16 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:16 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:16 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 38x35x7) for time after (2025-05-18 12:00:00)
39:16 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 11:00:00) in space  (linearNDFast)
39:16 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:16 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 12:00:00) in space  (linearNDFast)
39:16 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:16 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 11:00:00, weight 0.85) and
                      after (2025-05-18 12:00:00, weight 0.15) in time
39:16 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:16 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.309246197747356 degrees.
39:16 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.309246197747356 degrees.
39:16 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:16 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:16 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:16 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:16 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:16 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:16 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:16 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:16 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:16 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:16 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:16 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:16 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:16 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:16 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:16 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:16 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:16 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:16 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:16 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:16 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:16 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:16 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:16 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:16 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:16 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:16 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:16 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:16 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:16 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.215987 (min) 0.21041 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.168809 (min) 0.147502 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.315209 (min) -0.293643 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -4.2095 (min) -3.8755 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -7.23016 (min) -6.41396 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 23.9813 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.94482 (min) 12.3685 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.1918 (min) 30.9212 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000324969 (min) 0.000127868 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:16 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:16 DEBUG   opendrift:699: No elements hit coastline.
39:16 DEBUG   opendrift:735: Lifting 88 elements to seafloor.
39:16 DEBUG   opendrift:1745: No elements to deactivate
39:16 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:16 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:16 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:16 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 24
39:16 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
39:16 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
39:16 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[ 0.  0.  0. 96.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 1.  0.  0.  7.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
39:16 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:16 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:16 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:16 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:16 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04996043029056683
39:16 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:16 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:16 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:16 DEBUG   opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:544: 25 elements reached seafloor, interacting with bottom
39:16 DEBUG   opendrift:735: Lifting 25 elements to seafloor.
39:16 DEBUG   opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:16 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:16 DEBUG   opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:16 DEBUG   opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
39:16 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:16 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:16 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:16 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:16 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(354), np.int64(0), np.int64(41), np.int64(105), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:16 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:16 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:16 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:16 DEBUG   opendrift:2101: ======================================================================
39:16 INFO    opendrift:2102: 2025-05-18 11:39:03.420424 - step 5 of 96 - 500 active elements (0 deactivated)
39:16 DEBUG   opendrift:2108: 0 elements scheduled.
39:16 DEBUG   opendrift:2110: ======================================================================
39:16 DEBUG   opendrift:2121:                57.542606145913226 <- latitude -> 57.65202703466698
39:16 DEBUG   opendrift:2121:                10.50593797924633 <- longitude -> 10.684693744688838
39:16 DEBUG   opendrift:2121:                -21.997474670410156 <- z -> -0.06332280748769481
39:16 DEBUG   opendrift:2122: ---------------------------------
39:16 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:16 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:16 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:16 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:16 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:16 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:16 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:16 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 11:00:00 (before)
                2025-05-18 12:00:00 (after)
39:16 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 11:00:00) in space  (linearNDFast)
39:16 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:16 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 12:00:00) in space  (linearNDFast)
39:16 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:16 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 11:00:00, weight 0.35) and
                      after (2025-05-18 12:00:00, weight 0.65) in time
39:16 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:16 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.315317313240804 degrees.
39:16 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.315317313240804 degrees.
39:17 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:17 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:17 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:17 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:17 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:17 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:17 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:17 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:17 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:17 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:17 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:17 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:17 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:17 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:17 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:17 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:17 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:17 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:17 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:17 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:17 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:17 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:17 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:17 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:17 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:17 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.152183 (min) 0.194597 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.185687 (min) 0.181999 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.35561 (min) -0.332652 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -4.94099 (min) -4.18023 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -7.15655 (min) -5.91384 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 23.7715 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.98319 (min) 12.3811 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.1906 (min) 30.9248 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000284466 (min) 0.000127556 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:17 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:17 DEBUG   opendrift:699: No elements hit coastline.
39:17 DEBUG   opendrift:735: Lifting 118 elements to seafloor.
39:17 DEBUG   opendrift:1745: No elements to deactivate
39:17 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:17 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:17 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:17 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 23
39:17 DEBUG   opendrift.models.chemicaldrift:1473: old species: [2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
39:17 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
39:17 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 118.   0.]
 [  0.   0.   0.   0.   0.]
 [  2.   0.   0.   9.   0.]
 [  0.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:17 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:17 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:17 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:17 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:17 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.05398070012549161
39:17 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:17 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:17 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:17 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:544: 22 elements reached seafloor, interacting with bottom
39:17 DEBUG   opendrift:735: Lifting 22 elements to seafloor.
39:17 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:17 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:17 DEBUG   opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:17 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:17 DEBUG   opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
39:17 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:17 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:17 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:17 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:17 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:17 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:17 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(333), np.int64(0), np.int64(37), np.int64(130), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:17 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:17 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:17 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:17 DEBUG   opendrift:2101: ======================================================================
39:17 INFO    opendrift:2102: 2025-05-18 12:09:03.420424 - step 6 of 96 - 500 active elements (0 deactivated)
39:17 DEBUG   opendrift:2108: 0 elements scheduled.
39:17 DEBUG   opendrift:2110: ======================================================================
39:17 DEBUG   opendrift:2121:                57.54192136321192 <- latitude -> 57.65360169974821
39:17 DEBUG   opendrift:2121:                10.50593797924633 <- longitude -> 10.680810965620008
39:17 DEBUG   opendrift:2121:                -21.959287643432617 <- z -> -0.10808632611134628
39:17 DEBUG   opendrift:2122: ---------------------------------
39:17 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:17 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:17 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:17 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:17 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:17 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:17 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 12:00:00 (before)
                2025-05-18 13:00:00 (after)
39:19 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:19 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:19 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:19 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:19 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:19 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:19 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 37x36x7) for time after (2025-05-18 13:00:00)
39:19 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 12:00:00) in space  (linearNDFast)
39:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:19 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 13:00:00) in space  (linearNDFast)
39:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:19 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 12:00:00, weight 0.85) and
                      after (2025-05-18 13:00:00, weight 0.15) in time
39:19 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.31920009661168 degrees.
39:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.31920009661168 degrees.
39:19 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:19 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:19 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:19 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:19 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:19 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:19 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:19 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:19 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:19 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:19 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:19 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:19 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:19 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:19 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:19 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:19 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.151536 (min) 0.16128 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.189258 (min) 0.214056 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.39435 (min) -0.369893 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -5.02573 (min) -4.05762 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -6.76378 (min) -5.34699 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 24.0272 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.90822 (min) 12.392 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.0496 (min) 31.0728 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000227041 (min) 0.000158645 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:19 DEBUG   opendrift:699: No elements hit coastline.
39:19 DEBUG   opendrift:735: Lifting 136 elements to seafloor.
39:19 DEBUG   opendrift:1745: No elements to deactivate
39:19 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:19 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:19 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:19 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 14
39:19 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0 2 0 0 0 2 0 0]
39:19 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3 0 3 3 3 0 3 3]
39:19 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 130.   0.]
 [  0.   0.   0.   0.   0.]
 [  4.   0.   0.  12.   0.]
 [  0.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:19 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:19 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:19 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:19 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:19 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.051111475995587935
39:19 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:19 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:19 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:19 DEBUG   opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:544: 12 elements reached seafloor, interacting with bottom
39:19 DEBUG   opendrift:735: Lifting 12 elements to seafloor.
39:19 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:19 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:19 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:19 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:19 DEBUG   opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
39:19 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:19 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:19 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:19 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:19 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(323), np.int64(0), np.int64(33), np.int64(144), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:19 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:19 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:19 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:19 DEBUG   opendrift:2101: ======================================================================
39:19 INFO    opendrift:2102: 2025-05-18 12:39:03.420424 - step 7 of 96 - 500 active elements (0 deactivated)
39:19 DEBUG   opendrift:2108: 0 elements scheduled.
39:19 DEBUG   opendrift:2110: ======================================================================
39:19 DEBUG   opendrift:2121:                57.540398871110575 <- latitude -> 57.65587825956407
39:19 DEBUG   opendrift:2121:                10.50593797924633 <- longitude -> 10.681947203074229
39:19 DEBUG   opendrift:2121:                -22.1978974148941 <- z -> -0.2343764299652067
39:19 DEBUG   opendrift:2122: ---------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:19 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:19 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 12:00:00 (before)
                2025-05-18 13:00:00 (after)
39:19 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 12:00:00) in space  (linearNDFast)
39:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:19 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 13:00:00) in space  (linearNDFast)
39:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:19 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 12:00:00, weight 0.35) and
                      after (2025-05-18 13:00:00, weight 0.65) in time
39:19 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.31806386057179 degrees.
39:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.31806386057179 degrees.
39:19 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:19 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:19 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:19 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:19 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:19 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:19 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:19 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:19 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:19 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:19 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:19 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:19 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:19 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:19 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:19 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:19 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.0970635 (min) 0.125924 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.181156 (min) 0.242938 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.427308 (min) -0.402471 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -3.68051 (min) -2.84669 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -5.63118 (min) -4.7376 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 24.1321 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.80015 (min) 12.4156 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8669 (min) 31.3267 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000178445 (min) 0.000212669 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:19 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:19 DEBUG   opendrift:699: No elements hit coastline.
39:19 DEBUG   opendrift:735: Lifting 148 elements to seafloor.
39:19 DEBUG   opendrift:1745: No elements to deactivate
39:19 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:19 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:19 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:19 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 15
39:19 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
39:19 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
39:19 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 145.   0.]
 [  0.   0.   0.   0.   0.]
 [  4.   0.   0.  14.   0.]
 [  0.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:19 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:19 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:19 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:19 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:19 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.03270706954297079
39:19 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:19 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:19 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:19 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:544: 16 elements reached seafloor, interacting with bottom
39:19 DEBUG   opendrift:735: Lifting 16 elements to seafloor.
39:19 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:19 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:19 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:19 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:19 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:19 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:19 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:19 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:19 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(308), np.int64(0), np.int64(31), np.int64(161), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:19 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:19 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:19 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:19 DEBUG   opendrift:2101: ======================================================================
39:19 INFO    opendrift:2102: 2025-05-18 13:09:03.420424 - step 8 of 96 - 500 active elements (0 deactivated)
39:19 DEBUG   opendrift:2108: 0 elements scheduled.
39:19 DEBUG   opendrift:2110: ======================================================================
39:19 DEBUG   opendrift:2121:                57.54230781201538 <- latitude -> 57.65607820436384
39:19 DEBUG   opendrift:2121:                10.505937979246333 <- longitude -> 10.681367230719292
39:19 DEBUG   opendrift:2121:                -21.891597747802734 <- z -> -0.1533318082538887
39:19 DEBUG   opendrift:2122: ---------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:19 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:19 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:19 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 13:00:00 (before)
                2025-05-18 14:00:00 (after)
39:21 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:21 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:21 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:21 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:21 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:21 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:21 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 37x35x7) for time after (2025-05-18 14:00:00)
39:21 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 13:00:00) in space  (linearNDFast)
39:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:21 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 14:00:00) in space  (linearNDFast)
39:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:21 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 13:00:00, weight 0.85) and
                      after (2025-05-18 14:00:00, weight 0.15) in time
39:21 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.318643852082396 degrees.
39:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.318643852082396 degrees.
39:21 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:21 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:21 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:21 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:21 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:21 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:21 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:21 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:21 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:21 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:21 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:21 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:21 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:21 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:21 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:21 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:21 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.112136 (min) 0.0859277 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.164535 (min) 0.251409 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.452204 (min) -0.42865 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -2.32697 (min) -1.56734 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -4.86855 (min) -4.22152 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 23.9209 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.77252 (min) 12.4657 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.9643 (min) 31.4258 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000119116 (min) 0.000302763 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:21 DEBUG   opendrift:699: No elements hit coastline.
39:21 DEBUG   opendrift:735: Lifting 164 elements to seafloor.
39:21 DEBUG   opendrift:1745: No elements to deactivate
39:21 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:21 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:21 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:21 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 9
39:21 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 2 0 0 3 0]
39:21 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 0 3 3 0 3]
39:21 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 152.   0.]
 [  0.   0.   0.   0.   0.]
 [  5.   0.   0.  16.   0.]
 [  1.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:21 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:21 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:21 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:21 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:21 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.02044354821978879
39:21 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:21 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:21 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:21 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:544: 7 elements reached seafloor, interacting with bottom
39:21 DEBUG   opendrift:735: Lifting 7 elements to seafloor.
39:21 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:21 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:21 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:21 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:21 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:21 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:21 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:21 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(303), np.int64(0), np.int64(29), np.int64(168), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:21 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:21 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:21 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:21 DEBUG   opendrift:2101: ======================================================================
39:21 INFO    opendrift:2102: 2025-05-18 13:39:03.420424 - step 9 of 96 - 500 active elements (0 deactivated)
39:21 DEBUG   opendrift:2108: 0 elements scheduled.
39:21 DEBUG   opendrift:2110: ======================================================================
39:21 DEBUG   opendrift:2121:                57.5448863973376 <- latitude -> 57.658710105783264
39:21 DEBUG   opendrift:2121:                10.505937979246333 <- longitude -> 10.682285292276285
39:21 DEBUG   opendrift:2121:                -21.867324829101562 <- z -> -0.13360774233115386
39:21 DEBUG   opendrift:2122: ---------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:21 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:21 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 13:00:00 (before)
                2025-05-18 14:00:00 (after)
39:21 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 13:00:00) in space  (linearNDFast)
39:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:21 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 14:00:00) in space  (linearNDFast)
39:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:21 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 13:00:00, weight 0.35) and
                      after (2025-05-18 14:00:00, weight 0.65) in time
39:21 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.31772577410949 degrees.
39:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.31772577410949 degrees.
39:21 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:21 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:21 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:21 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:21 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:21 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:21 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:21 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:21 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:21 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:21 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:21 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:21 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:21 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:21 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:21 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:21 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.132806 (min) 0.0806473 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.132853 (min) 0.248624 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.459303 (min) -0.437248 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -1.43984 (min) -0.174182 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -5.08274 (min) -4.49929 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 23.831 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.62127 (min) 12.4971 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.9965 (min) 31.6561 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000100579 (min) 0.000350331 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:21 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:21 DEBUG   opendrift:699: No elements hit coastline.
39:21 DEBUG   opendrift:735: Lifting 171 elements to seafloor.
39:21 DEBUG   opendrift:1745: No elements to deactivate
39:21 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:21 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:21 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:21 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 8
39:21 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0 0]
39:21 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3 3]
39:21 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 160.   0.]
 [  0.   0.   0.   0.   0.]
 [  5.   0.   0.  17.   0.]
 [  1.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:21 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:21 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:21 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:21 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:21 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.018716305344842452
39:21 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:21 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:21 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:21 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:544: 8 elements reached seafloor, interacting with bottom
39:21 DEBUG   opendrift:735: Lifting 8 elements to seafloor.
39:21 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:21 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:21 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:21 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:21 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:21 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:21 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(295), np.int64(0), np.int64(29), np.int64(176), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:21 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:21 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:21 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:21 DEBUG   opendrift:2101: ======================================================================
39:21 INFO    opendrift:2102: 2025-05-18 14:09:03.420424 - step 10 of 96 - 500 active elements (0 deactivated)
39:21 DEBUG   opendrift:2108: 0 elements scheduled.
39:21 DEBUG   opendrift:2110: ======================================================================
39:21 DEBUG   opendrift:2121:                57.54799908057317 <- latitude -> 57.6614976019903
39:21 DEBUG   opendrift:2121:                10.50593797924633 <- longitude -> 10.678369005886056
39:21 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> 0.0
39:21 DEBUG   opendrift:2122: ---------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:21 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:21 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:21 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 14:00:00 (before)
                2025-05-18 15:00:00 (after)
39:24 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:24 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:24 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:24 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:24 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:24 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:24 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 38x36x7) for time after (2025-05-18 15:00:00)
39:24 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 14:00:00) in space  (linearNDFast)
39:24 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:24 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 15:00:00) in space  (linearNDFast)
39:24 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:24 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 14:00:00, weight 0.85) and
                      after (2025-05-18 15:00:00, weight 0.15) in time
39:24 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:24 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.321642066444426 degrees.
39:24 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.321642066444426 degrees.
39:24 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:24 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:24 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:24 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:24 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:24 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:24 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:24 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:24 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:24 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:24 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:24 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:24 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:24 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:24 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:24 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:24 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:24 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:24 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:24 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:24 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:24 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:24 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.182416 (min) 0.108257 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0890261 (min) 0.247831 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.457546 (min) -0.436507 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -0.58795 (min) 0.930036 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -5.49558 (min) -4.79344 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 23.6396 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.41286 (min) 12.5483 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8125 (min) 32.1754 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -8.13295e-05 (min) 0.000434472 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:24 DEBUG   opendrift:699: No elements hit coastline.
39:24 DEBUG   opendrift:735: Lifting 13 elements to seafloor.
39:24 DEBUG   opendrift:1745: No elements to deactivate
39:24 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:24 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:24 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:24 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 11
39:24 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 2 0 0 0 0 0 0 2 0]
39:24 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 0 3 3 3 3 3 3 0 3]
39:24 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 169.   0.]
 [  0.   0.   0.   0.   0.]
 [  7.   0.   0.  17.   0.]
 [  1.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:24 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:24 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:24 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:24 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:24 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.02221520601743319
39:24 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:24 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:24 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:24 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:544: 9 elements reached seafloor, interacting with bottom
39:24 DEBUG   opendrift:735: Lifting 9 elements to seafloor.
39:24 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:24 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:24 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:24 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:24 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:24 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:24 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:24 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(288), np.int64(0), np.int64(26), np.int64(186), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:24 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:24 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:24 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:24 DEBUG   opendrift:2101: ======================================================================
39:24 INFO    opendrift:2102: 2025-05-18 14:39:03.420424 - step 11 of 96 - 500 active elements (0 deactivated)
39:24 DEBUG   opendrift:2108: 0 elements scheduled.
39:24 DEBUG   opendrift:2110: ======================================================================
39:24 DEBUG   opendrift:2121:                57.54697239184762 <- latitude -> 57.66436422968351
39:24 DEBUG   opendrift:2121:                10.50593797924633 <- longitude -> 10.67865431563345
39:24 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> -0.01524021747849047
39:24 DEBUG   opendrift:2122: ---------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:24 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:24 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:24 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:24 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 14:00:00 (before)
                2025-05-18 15:00:00 (after)
39:24 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 14:00:00) in space  (linearNDFast)
39:24 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:24 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 15:00:00) in space  (linearNDFast)
39:24 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:24 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 14:00:00, weight 0.35) and
                      after (2025-05-18 15:00:00, weight 0.65) in time
39:24 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:24 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.321356741597654 degrees.
39:24 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.321356741597654 degrees.
39:24 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:24 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:24 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:24 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:24 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:24 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:24 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:24 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:24 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:24 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:24 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:24 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:24 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:24 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:24 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:24 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:24 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:24 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:24 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:24 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:24 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:24 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:24 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.216891 (min) 0.134099 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0449838 (min) 0.224704 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.436067 (min) -0.417672 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 0.18246 (min) 1.19465 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -5.88973 (min) -5.04693 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 23.392 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.16158 (min) 12.5665 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.9275 (min) 32.7428 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -5.37525e-05 (min) 0.000438058 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:24 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:24 DEBUG   opendrift:699: No elements hit coastline.
39:24 DEBUG   opendrift:730: No elements hit seafloor.
39:24 DEBUG   opendrift:1745: No elements to deactivate
39:24 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:24 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:24 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:24 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 8
39:24 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 2 3 0 0]
39:24 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 0 0 3 3]
39:24 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 175.   0.]
 [  0.   0.   0.   0.   0.]
 [  8.   0.   0.  18.   0.]
 [  2.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:24 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:24 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:24 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:24 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:24 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.026060223933695607
39:24 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:24 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:24 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:24 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:544: 6 elements reached seafloor, interacting with bottom
39:24 DEBUG   opendrift:735: Lifting 6 elements to seafloor.
39:24 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:24 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:24 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:24 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:24 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:24 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:24 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:24 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:24 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:24 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:24 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:24 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:24 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:24 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:24 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(284), np.int64(0), np.int64(21), np.int64(195), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:24 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:24 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:24 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:24 DEBUG   opendrift:2101: ======================================================================
39:24 INFO    opendrift:2102: 2025-05-18 15:09:03.420424 - step 12 of 96 - 500 active elements (0 deactivated)
39:24 DEBUG   opendrift:2108: 0 elements scheduled.
39:24 DEBUG   opendrift:2110: ======================================================================
39:24 DEBUG   opendrift:2121:                57.54709200514362 <- latitude -> 57.66708914590072
39:24 DEBUG   opendrift:2121:                10.50593797924633 <- longitude -> 10.682493403314002
39:24 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> 0.0
39:24 DEBUG   opendrift:2122: ---------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:24 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:24 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:24 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:24 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:24 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 15:00:00 (before)
                2025-05-18 16:00:00 (after)
39:26 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:26 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:26 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:26 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:26 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:26 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:26 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 37x36x7) for time after (2025-05-18 16:00:00)
39:26 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 15:00:00) in space  (linearNDFast)
39:26 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:26 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 16:00:00) in space  (linearNDFast)
39:26 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:26 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 15:00:00, weight 0.85) and
                      after (2025-05-18 16:00:00, weight 0.15) in time
39:26 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:26 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.31751765122031 degrees.
39:26 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311316302 and -59.31751765122031 degrees.
39:26 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:26 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:26 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:26 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:26 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:26 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:26 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:26 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:26 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:26 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:26 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:26 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:26 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:26 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:26 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:26 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:26 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:26 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:26 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:26 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:26 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:26 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:26 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.250934 (min) 0.159033 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0242084 (min) 0.213772 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.410557 (min) -0.39389 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 0.823078 (min) 1.47511 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -6.26676 (min) -5.27738 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 23.0147 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.07821 (min) 12.6436 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.6104 (min) 32.9372 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -1.60647e-05 (min) 0.000478917 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:26 DEBUG   opendrift:699: No elements hit coastline.
39:26 DEBUG   opendrift:730: No elements hit seafloor.
39:26 DEBUG   opendrift:1745: No elements to deactivate
39:26 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:26 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:26 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:26 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 9
39:26 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0 0 2]
39:26 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3 3 0]
39:26 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 183.   0.]
 [  0.   0.   0.   0.   0.]
 [  9.   0.   0.  22.   0.]
 [  2.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:26 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:26 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:26 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:26 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:26 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.02995524372191643
39:26 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:26 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:26 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:26 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:544: 8 elements reached seafloor, interacting with bottom
39:26 DEBUG   opendrift:735: Lifting 8 elements to seafloor.
39:26 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:26 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:26 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:26 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:26 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:26 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(277), np.int64(0), np.int64(20), np.int64(203), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:26 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:26 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:26 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:26 DEBUG   opendrift:2101: ======================================================================
39:26 INFO    opendrift:2102: 2025-05-18 15:39:03.420424 - step 13 of 96 - 500 active elements (0 deactivated)
39:26 DEBUG   opendrift:2108: 0 elements scheduled.
39:26 DEBUG   opendrift:2110: ======================================================================
39:26 DEBUG   opendrift:2121:                57.547640674328775 <- latitude -> 57.669662953816186
39:26 DEBUG   opendrift:2121:                10.505937979246333 <- longitude -> 10.685102872725531
39:26 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> 0.0
39:26 DEBUG   opendrift:2122: ---------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:26 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:26 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:26 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:26 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 15:00:00 (before)
                2025-05-18 16:00:00 (after)
39:26 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 15:00:00) in space  (linearNDFast)
39:26 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:26 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 16:00:00) in space  (linearNDFast)
39:26 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:26 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 15:00:00, weight 0.35) and
                      after (2025-05-18 16:00:00, weight 0.65) in time
39:26 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:26 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.494073116696384 and -59.31490818085913 degrees.
39:26 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.494073116696384 and -59.31490818085913 degrees.
39:26 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:26 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:26 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:26 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:26 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:26 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:26 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:26 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:26 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:26 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:26 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:26 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:26 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:26 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:26 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:26 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:26 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:26 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:26 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:26 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:26 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:26 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:26 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.246324 (min) 0.18677 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0237677 (min) 0.197146 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.373557 (min) -0.358181 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 1.06549 (min) 1.74633 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -6.50346 (min) -5.64947 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 22.9709 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.01522 (min) 12.6869 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.5411 (min) 33.1332 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -2.0762e-06 (min) 0.000483925 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:26 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:26 DEBUG   opendrift:699: No elements hit coastline.
39:26 DEBUG   opendrift:730: No elements hit seafloor.
39:26 DEBUG   opendrift:1745: No elements to deactivate
39:26 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:26 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:26 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:26 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 6
39:26 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0]
39:26 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3]
39:26 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 189.   0.]
 [  0.   0.   0.   0.   0.]
 [  9.   0.   0.  22.   0.]
 [  2.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:26 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:26 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:26 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:26 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:26 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.0326868082464115
39:26 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:26 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:26 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:26 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:544: 6 elements reached seafloor, interacting with bottom
39:26 DEBUG   opendrift:735: Lifting 6 elements to seafloor.
39:26 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:26 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:26 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:26 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:26 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:26 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:26 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:26 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:26 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(271), np.int64(0), np.int64(19), np.int64(210), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:26 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:26 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:26 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:26 DEBUG   opendrift:2101: ======================================================================
39:26 INFO    opendrift:2102: 2025-05-18 16:09:03.420424 - step 14 of 96 - 500 active elements (0 deactivated)
39:26 DEBUG   opendrift:2108: 0 elements scheduled.
39:26 DEBUG   opendrift:2110: ======================================================================
39:26 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.672008755859444
39:26 DEBUG   opendrift:2121:                10.505937979246337 <- longitude -> 10.680543031008318
39:26 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> 0.0
39:26 DEBUG   opendrift:2122: ---------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:26 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:26 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:26 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:26 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:26 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 16:00:00 (before)
                2025-05-18 17:00:00 (after)
39:28 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:28 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:28 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:28 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:28 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:28 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:28 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 38x35x7) for time after (2025-05-18 17:00:00)
39:28 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 16:00:00) in space  (linearNDFast)
39:28 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:28 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 17:00:00) in space  (linearNDFast)
39:28 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:28 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 16:00:00, weight 0.85) and
                      after (2025-05-18 17:00:00, weight 0.15) in time
39:28 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.494073116696384 and -59.31946801438548 degrees.
39:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.494073116696384 and -59.31946801438548 degrees.
39:29 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:29 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:29 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:29 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:29 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:29 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:29 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:29 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:29 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:29 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:29 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:29 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:29 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:29 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:29 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:29 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:29 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.238782 (min) 0.202832 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0277666 (min) 0.187612 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.336172 (min) -0.321644 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 1.02727 (min) 1.99017 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -6.73109 (min) -5.76471 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 23.0657 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.99179 (min) 12.6863 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8119 (min) 33.2158 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: 6.52733e-06 (min) 0.000536536 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:29 DEBUG   opendrift:699: No elements hit coastline.
39:29 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:29 DEBUG   opendrift:1745: No elements to deactivate
39:29 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:29 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:29 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:29 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 7
39:29 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0]
39:29 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3]
39:29 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 196.   0.]
 [  0.   0.   0.   0.   0.]
 [  9.   0.   0.  23.   0.]
 [  2.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:29 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:29 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:29 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:29 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:29 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.03475808186454745
39:29 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:29 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:29 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:29 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:544: 7 elements reached seafloor, interacting with bottom
39:29 DEBUG   opendrift:735: Lifting 7 elements to seafloor.
39:29 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:29 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:29 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:29 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:29 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:29 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:29 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:29 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(264), np.int64(0), np.int64(18), np.int64(218), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:29 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:29 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:29 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:29 DEBUG   opendrift:2101: ======================================================================
39:29 INFO    opendrift:2102: 2025-05-18 16:39:03.420424 - step 15 of 96 - 500 active elements (0 deactivated)
39:29 DEBUG   opendrift:2108: 0 elements scheduled.
39:29 DEBUG   opendrift:2110: ======================================================================
39:29 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.67408408277675
39:29 DEBUG   opendrift:2121:                10.505937979246337 <- longitude -> 10.686656849831904
39:29 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> 0.0
39:29 DEBUG   opendrift:2122: ---------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:29 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:29 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 16:00:00 (before)
                2025-05-18 17:00:00 (after)
39:29 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 16:00:00) in space  (linearNDFast)
39:29 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:29 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 17:00:00) in space  (linearNDFast)
39:29 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:29 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 16:00:00, weight 0.35) and
                      after (2025-05-18 17:00:00, weight 0.65) in time
39:29 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4940731103639 and -59.313354209836874 degrees.
39:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4940731103639 and -59.313354209836874 degrees.
39:29 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:29 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:29 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:29 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:29 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:29 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:29 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:29 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:29 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:29 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:29 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:29 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:29 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:29 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:29 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:29 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:29 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.214473 (min) 0.183264 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0317708 (min) 0.213398 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.297783 (min) -0.284018 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 0.553095 (min) 1.86251 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -7.15177 (min) -5.83651 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 22.876 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.9839 (min) 12.7129 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.6386 (min) 33.2701 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: 5.5886e-06 (min) 0.000425824 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:29 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:29 DEBUG   opendrift:699: No elements hit coastline.
39:29 DEBUG   opendrift:730: No elements hit seafloor.
39:29 DEBUG   opendrift:1745: No elements to deactivate
39:29 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:29 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:29 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:29 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 8
39:29 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0 0]
39:29 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3 3]
39:29 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 204.   0.]
 [  0.   0.   0.   0.   0.]
 [  9.   0.   0.  24.   0.]
 [  2.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:29 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:29 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:29 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:29 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:29 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.037962014564167174
39:29 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:29 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:29 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:29 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:544: 8 elements reached seafloor, interacting with bottom
39:29 DEBUG   opendrift:735: Lifting 8 elements to seafloor.
39:29 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:29 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:29 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:29 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:29 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:29 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:29 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:29 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:29 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:29 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:29 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(256), np.int64(0), np.int64(16), np.int64(228), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:29 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:29 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:29 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:29 DEBUG   opendrift:2101: ======================================================================
39:29 INFO    opendrift:2102: 2025-05-18 17:09:03.420424 - step 16 of 96 - 500 active elements (0 deactivated)
39:29 DEBUG   opendrift:2108: 0 elements scheduled.
39:29 DEBUG   opendrift:2110: ======================================================================
39:29 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.676026365405214
39:29 DEBUG   opendrift:2121:                10.505523501194013 <- longitude -> 10.691976380076678
39:29 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> 0.0
39:29 DEBUG   opendrift:2122: ---------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:29 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:29 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:29 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 17:00:00 (before)
                2025-05-18 18:00:00 (after)
39:31 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:31 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:31 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:31 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:31 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:31 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:31 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 39x35x7) for time after (2025-05-18 18:00:00)
39:31 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 17:00:00) in space  (linearNDFast)
39:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:31 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 18:00:00) in space  (linearNDFast)
39:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:31 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 17:00:00, weight 0.85) and
                      after (2025-05-18 18:00:00, weight 0.15) in time
39:31 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4944875886583 and -59.30803466909448 degrees.
39:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4944875886583 and -59.30803466909448 degrees.
39:31 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:31 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:31 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:31 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:31 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:31 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:31 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:31 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:31 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:31 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:31 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:31 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:31 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:31 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:31 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:31 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:31 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.188879 (min) 0.171481 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0571785 (min) 0.232777 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.261641 (min) -0.248676 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -0.178106 (min) 1.28103 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -7.48106 (min) -6.01664 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 22.966 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.97885 (min) 12.6826 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8865 (min) 33.3111 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: 5.30695e-06 (min) 0.000421167 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:31 DEBUG   opendrift:699: No elements hit coastline.
39:31 DEBUG   opendrift:730: No elements hit seafloor.
39:31 DEBUG   opendrift:1745: No elements to deactivate
39:31 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:31 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:31 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:31 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 5
39:31 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0]
39:31 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3]
39:31 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 209.   0.]
 [  0.   0.   0.   0.   0.]
 [  9.   0.   0.  26.   0.]
 [  2.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:31 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:31 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:31 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:31 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:31 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04055937933176873
39:31 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:31 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:31 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:31 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:544: 5 elements reached seafloor, interacting with bottom
39:31 DEBUG   opendrift:735: Lifting 5 elements to seafloor.
39:31 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:31 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:31 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:31 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:31 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:31 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(251), np.int64(0), np.int64(16), np.int64(233), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:31 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:31 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:31 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:31 DEBUG   opendrift:2101: ======================================================================
39:31 INFO    opendrift:2102: 2025-05-18 17:39:03.420424 - step 17 of 96 - 500 active elements (0 deactivated)
39:31 DEBUG   opendrift:2108: 0 elements scheduled.
39:31 DEBUG   opendrift:2110: ======================================================================
39:31 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.67779750671347
39:31 DEBUG   opendrift:2121:                10.504614791537904 <- longitude -> 10.686962730781941
39:31 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> 0.0
39:31 DEBUG   opendrift:2122: ---------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:31 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:31 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:31 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 17:00:00 (before)
                2025-05-18 18:00:00 (after)
39:31 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 17:00:00) in space  (linearNDFast)
39:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:31 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 18:00:00) in space  (linearNDFast)
39:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:31 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 17:00:00, weight 0.35) and
                      after (2025-05-18 18:00:00, weight 0.65) in time
39:31 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49539629696806 and -59.31304832271891 degrees.
39:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49539629696806 and -59.31304832271891 degrees.
39:31 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:31 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:31 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:31 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:31 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:31 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:31 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:31 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:31 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:31 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:31 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:31 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:31 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:31 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:31 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:31 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:31 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.154711 (min) 0.129373 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.119335 (min) 0.238659 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.230631 (min) -0.219839 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -1.43302 (min) -0.349887 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -7.6433 (min) -6.55009 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.4752 (min) 23.2605 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.95844 (min) 12.6636 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.0572 (min) 33.3679 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: 5.8521e-06 (min) 0.000315074 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:31 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:31 DEBUG   opendrift:699: No elements hit coastline.
39:31 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:31 DEBUG   opendrift:1745: No elements to deactivate
39:31 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:31 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:31 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:31 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 14
39:31 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 2 0 0 0 0 0 0 0]
39:31 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 0 3 3 3 3 3 3 3]
39:31 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 222.   0.]
 [  0.   0.   0.   0.   0.]
 [ 10.   0.   0.  26.   0.]
 [  2.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:31 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:31 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:31 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:31 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:31 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04266935029640868
39:31 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:31 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:31 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:31 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:544: 13 elements reached seafloor, interacting with bottom
39:31 DEBUG   opendrift:735: Lifting 13 elements to seafloor.
39:31 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
39:31 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:31 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:31 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:31 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:31 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:31 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(239), np.int64(0), np.int64(15), np.int64(246), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:31 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:31 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:31 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:31 DEBUG   opendrift:2101: ======================================================================
39:31 INFO    opendrift:2102: 2025-05-18 18:09:03.420424 - step 18 of 96 - 500 active elements (0 deactivated)
39:31 DEBUG   opendrift:2108: 0 elements scheduled.
39:31 DEBUG   opendrift:2110: ======================================================================
39:31 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.678309766587006
39:31 DEBUG   opendrift:2121:                10.503617029262289 <- longitude -> 10.69034735580295
39:31 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> 0.0
39:31 DEBUG   opendrift:2122: ---------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:31 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:31 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:31 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:31 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 18:00:00 (before)
                2025-05-18 19:00:00 (after)
39:34 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:34 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:34 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:34 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:34 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:34 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:34 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 39x35x7) for time after (2025-05-18 19:00:00)
39:34 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 18:00:00) in space  (linearNDFast)
39:34 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:34 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 19:00:00) in space  (linearNDFast)
39:34 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:35 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 18:00:00, weight 0.85) and
                      after (2025-05-18 19:00:00, weight 0.15) in time
39:35 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:35 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49639404982402 and -59.309663715460346 degrees.
39:35 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49639404982402 and -59.309663715460346 degrees.
39:35 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:35 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:35 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:35 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:35 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:35 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:35 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:35 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:35 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:35 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:35 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:35 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:35 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:35 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:35 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:35 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:35 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:35 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:35 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:35 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:35 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:35 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:35 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.130712 (min) 0.0985336 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.197701 (min) 0.238275 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.205027 (min) -0.19517 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -2.48495 (min) -1.68245 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -7.82581 (min) -6.66449 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.40185 (min) 23.5264 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.96283 (min) 12.705 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8937 (min) 33.369 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: 5.08342e-06 (min) 0.000291969 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:35 DEBUG   opendrift:699: No elements hit coastline.
39:35 DEBUG   opendrift:730: No elements hit seafloor.
39:35 DEBUG   opendrift:1745: No elements to deactivate
39:35 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:35 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:35 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:35 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 17
39:35 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0]
39:35 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 0 3 3 3 3 3 3 3 3 3 3 3 3 3]
39:35 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 238.   0.]
 [  0.   0.   0.   0.   0.]
 [ 11.   0.   0.  26.   0.]
 [  2.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:35 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:35 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:35 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:35 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:35 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04675430517673499
39:35 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:35 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:35 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:35 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:544: 16 elements reached seafloor, interacting with bottom
39:35 DEBUG   opendrift:735: Lifting 16 elements to seafloor.
39:35 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:35 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:35 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:35 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:35 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:35 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(224), np.int64(0), np.int64(14), np.int64(262), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:35 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:35 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:35 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:35 DEBUG   opendrift:2101: ======================================================================
39:35 INFO    opendrift:2102: 2025-05-18 18:39:03.420424 - step 19 of 96 - 500 active elements (0 deactivated)
39:35 DEBUG   opendrift:2108: 0 elements scheduled.
39:35 DEBUG   opendrift:2110: ======================================================================
39:35 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.679456776583606
39:35 DEBUG   opendrift:2121:                10.502448779866322 <- longitude -> 10.692851066185106
39:35 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> -0.07783510317464226
39:35 DEBUG   opendrift:2122: ---------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:35 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:35 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:35 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:35 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 18:00:00 (before)
                2025-05-18 19:00:00 (after)
39:35 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 18:00:00) in space  (linearNDFast)
39:35 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:35 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 19:00:00) in space  (linearNDFast)
39:35 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:35 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 18:00:00, weight 0.35) and
                      after (2025-05-18 19:00:00, weight 0.65) in time
39:35 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:35 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49756231471197 and -59.30716000448029 degrees.
39:35 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49756231471197 and -59.30716000448029 degrees.
39:35 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:35 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:35 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:35 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:35 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:35 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:35 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:35 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:35 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:35 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:35 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:35 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:35 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:35 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:35 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:35 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:35 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:35 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:35 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:35 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:35 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:35 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:35 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.115389 (min) 0.0504234 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.160631 (min) 0.232408 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.190027 (min) -0.178851 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -3.17451 (min) -2.6185 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -7.3966 (min) -6.40352 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.32654 (min) 23.7923 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.95722 (min) 12.6861 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.1874 (min) 33.3809 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -3.48618e-05 (min) 0.000215962 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:35 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:35 DEBUG   opendrift:699: No elements hit coastline.
39:35 DEBUG   opendrift:730: No elements hit seafloor.
39:35 DEBUG   opendrift:1745: No elements to deactivate
39:35 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:35 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:35 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:35 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 9
39:35 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0 0 0]
39:35 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3 3 3]
39:35 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 247.   0.]
 [  0.   0.   0.   0.   0.]
 [ 11.   0.   0.  26.   0.]
 [  2.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:35 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:35 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:35 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:35 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:35 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04467116215991768
39:35 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:35 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:35 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:35 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:544: 9 elements reached seafloor, interacting with bottom
39:35 DEBUG   opendrift:735: Lifting 9 elements to seafloor.
39:35 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:35 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:35 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:35 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:35 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:35 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:35 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:35 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:35 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:35 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:35 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(215), np.int64(0), np.int64(12), np.int64(273), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:35 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:35 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:35 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:35 DEBUG   opendrift:2101: ======================================================================
39:35 INFO    opendrift:2102: 2025-05-18 19:09:03.420424 - step 20 of 96 - 500 active elements (0 deactivated)
39:35 DEBUG   opendrift:2108: 0 elements scheduled.
39:35 DEBUG   opendrift:2110: ======================================================================
39:35 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.68209996877475
39:35 DEBUG   opendrift:2121:                10.501386968078847 <- longitude -> 10.690410802203834
39:35 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> -0.093192499323286
39:35 DEBUG   opendrift:2122: ---------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:35 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:35 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:35 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:35 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:35 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 19:00:00 (before)
                2025-05-18 20:00:00 (after)
39:37 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:37 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:37 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:37 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:37 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:37 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:37 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 40x35x7) for time after (2025-05-18 20:00:00)
39:37 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 19:00:00) in space  (linearNDFast)
39:37 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:37 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 20:00:00) in space  (linearNDFast)
39:37 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:37 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 19:00:00, weight 0.85) and
                      after (2025-05-18 20:00:00, weight 0.15) in time
39:37 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:37 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.498624110810006 and -59.309600268252815 degrees.
39:37 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.498624110810006 and -59.309600268252815 degrees.
39:37 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:37 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:37 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:37 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:37 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:37 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:37 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:37 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:37 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:37 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:37 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:37 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:37 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:37 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:37 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:37 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:37 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:37 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:37 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:37 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:37 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:37 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:37 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.0986725 (min) 0.0622124 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.194521 (min) 0.231106 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.179082 (min) -0.164569 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -3.87504 (min) -3.37794 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -6.99894 (min) -5.9602 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.25428 (min) 23.5587 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.97 (min) 12.6724 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.3121 (min) 33.357 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -7.57995e-05 (min) 0.000185171 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:37 DEBUG   opendrift:699: No elements hit coastline.
39:37 DEBUG   opendrift:730: No elements hit seafloor.
39:37 DEBUG   opendrift:1745: No elements to deactivate
39:37 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:37 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:37 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:37 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 8
39:37 DEBUG   opendrift.models.chemicaldrift:1473: old species: [2 0 0 0 0 0 0 0]
39:37 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0 3 3 3 3 3 3 3]
39:37 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 254.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  28.   0.]
 [  2.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:37 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:37 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:37 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:37 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:37 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.044386571967263096
39:37 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:37 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:37 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:37 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:544: 7 elements reached seafloor, interacting with bottom
39:37 DEBUG   opendrift:735: Lifting 7 elements to seafloor.
39:37 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:37 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:37 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:37 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:37 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:37 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(209), np.int64(0), np.int64(11), np.int64(280), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:37 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:37 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:37 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:37 DEBUG   opendrift:2101: ======================================================================
39:37 INFO    opendrift:2102: 2025-05-18 19:39:03.420424 - step 21 of 96 - 500 active elements (0 deactivated)
39:37 DEBUG   opendrift:2108: 0 elements scheduled.
39:37 DEBUG   opendrift:2110: ======================================================================
39:37 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.68321150986924
39:37 DEBUG   opendrift:2121:                10.500288967534217 <- longitude -> 10.68761728559304
39:37 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> 0.0
39:37 DEBUG   opendrift:2122: ---------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:37 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:37 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:37 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:37 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 19:00:00 (before)
                2025-05-18 20:00:00 (after)
39:37 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 19:00:00) in space  (linearNDFast)
39:37 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:37 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 20:00:00) in space  (linearNDFast)
39:37 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:37 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 19:00:00, weight 0.35) and
                      after (2025-05-18 20:00:00, weight 0.65) in time
39:37 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:37 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.499722130217386 and -59.31239378045274 degrees.
39:37 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.499722130217386 and -59.31239378045274 degrees.
39:37 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:37 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:37 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:37 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:37 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:37 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:37 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:37 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:37 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:37 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:37 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:37 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:37 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:37 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:37 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:37 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:37 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:37 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:37 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:37 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:37 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:37 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:37 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.0951405 (min) 0.0902745 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.167204 (min) 0.217076 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.176449 (min) -0.157711 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -4.3087 (min) -3.74882 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -6.4768 (min) -5.36113 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.1824 (min) 23.4918 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.96406 (min) 12.6542 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.4279 (min) 33.3577 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.00011649 (min) 0.000131954 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:37 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:37 DEBUG   opendrift:699: No elements hit coastline.
39:37 DEBUG   opendrift:730: No elements hit seafloor.
39:37 DEBUG   opendrift:1745: No elements to deactivate
39:37 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:37 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:37 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:37 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 13
39:37 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0]
39:37 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3]
39:37 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 267.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  28.   0.]
 [  2.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:37 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:37 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:37 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:37 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:37 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.043578104222101025
39:37 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:37 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:37 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:37 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:544: 13 elements reached seafloor, interacting with bottom
39:37 DEBUG   opendrift:735: Lifting 13 elements to seafloor.
39:37 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:37 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:37 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:37 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:37 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:37 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:37 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(196), np.int64(0), np.int64(11), np.int64(293), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:37 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:37 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:37 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:37 DEBUG   opendrift:2101: ======================================================================
39:37 INFO    opendrift:2102: 2025-05-18 20:09:03.420424 - step 22 of 96 - 500 active elements (0 deactivated)
39:37 DEBUG   opendrift:2108: 0 elements scheduled.
39:37 DEBUG   opendrift:2110: ======================================================================
39:37 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.68406081334779
39:37 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.687792579133173
39:37 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> -0.11470516765824623
39:37 DEBUG   opendrift:2122: ---------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:37 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:37 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:37 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:37 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:37 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 20:00:00 (before)
                2025-05-18 21:00:00 (after)
39:39 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:39 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:39 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:39 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:39 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:39 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:39 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 40x35x7) for time after (2025-05-18 21:00:00)
39:39 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 20:00:00) in space  (linearNDFast)
39:39 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:39 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 21:00:00) in space  (linearNDFast)
39:39 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:39 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 20:00:00, weight 0.85) and
                      after (2025-05-18 21:00:00, weight 0.15) in time
39:39 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:39 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.31221847752523 degrees.
39:39 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.31221847752523 degrees.
39:39 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:39 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:39 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:39 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:39 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:39 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:39 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:39 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:39 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:39 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:39 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:39 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:39 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:39 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:39 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:39 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:39 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:39 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:39 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:39 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:39 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:39 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:39 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:39 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:39 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:39 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:39 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:39 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:39 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:39 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.134657 (min) 0.126315 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.162131 (min) 0.222815 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.17651 (min) -0.153355 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -4.86897 (min) -3.95099 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -5.986 (min) -4.77783 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 23.3602 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.96918 (min) 12.6468 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.4334 (min) 33.3434 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000133609 (min) 0.000112147 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:39 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:39 DEBUG   opendrift:699: No elements hit coastline.
39:39 DEBUG   opendrift:735: Lifting 3 elements to seafloor.
39:39 DEBUG   opendrift:1745: No elements to deactivate
39:39 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:39 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:39 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:39 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 14
39:39 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0]
39:39 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3]
39:39 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 281.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  28.   0.]
 [  2.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:39 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:39 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:39 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:39 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:39 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04302807656964326
39:39 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:39 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:39 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:39 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:39 DEBUG   opendrift.models.oceandrift:544: 14 elements reached seafloor, interacting with bottom
39:39 DEBUG   opendrift:735: Lifting 14 elements to seafloor.
39:39 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:39 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:39 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:39 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:39 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:39 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:39 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:39 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:39 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:39 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:39 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:40 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:40 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:40 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:40 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:40 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:40 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:40 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(182), np.int64(0), np.int64(10), np.int64(308), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:40 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:40 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:40 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:40 DEBUG   opendrift:2101: ======================================================================
39:40 INFO    opendrift:2102: 2025-05-18 20:39:03.420424 - step 23 of 96 - 500 active elements (0 deactivated)
39:40 DEBUG   opendrift:2108: 0 elements scheduled.
39:40 DEBUG   opendrift:2110: ======================================================================
39:40 DEBUG   opendrift:2121:                57.54827571138428 <- latitude -> 57.68705999191246
39:40 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.690610940480507
39:40 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> -0.10200177242527397
39:40 DEBUG   opendrift:2122: ---------------------------------
39:40 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:40 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:40 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:40 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:40 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:40 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:40 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:40 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 20:00:00 (before)
                2025-05-18 21:00:00 (after)
39:40 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 20:00:00) in space  (linearNDFast)
39:40 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:40 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 21:00:00) in space  (linearNDFast)
39:40 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:40 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 20:00:00, weight 0.35) and
                      after (2025-05-18 21:00:00, weight 0.65) in time
39:40 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:40 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.309400113311746 degrees.
39:40 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.309400113311746 degrees.
39:40 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:40 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:40 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:40 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:40 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:40 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:40 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:40 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:40 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:40 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:40 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:40 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:40 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:40 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:40 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:40 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:40 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:40 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:40 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:40 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:40 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:40 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:40 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:40 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:40 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:40 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:40 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:40 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.19839 (min) 0.14568 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.190853 (min) 0.214504 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.183455 (min) -0.155855 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -4.8151 (min) -4.1043 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -5.41341 (min) -4.20656 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 23.2404 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.97775 (min) 12.6392 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.1314 (min) 33.3255 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000166485 (min) 8.09483e-05 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:40 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:40 DEBUG   opendrift:699: No elements hit coastline.
39:40 DEBUG   opendrift:735: Lifting 31 elements to seafloor.
39:40 DEBUG   opendrift:1745: No elements to deactivate
39:40 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:40 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:40 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:40 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 13
39:40 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0]
39:40 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3]
39:40 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 294.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  29.   0.]
 [  2.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:40 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:40 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:40 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:40 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:40 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.037934378141538466
39:40 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:40 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:40 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:40 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:544: 13 elements reached seafloor, interacting with bottom
39:40 DEBUG   opendrift:735: Lifting 13 elements to seafloor.
39:40 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:40 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:40 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:40 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:40 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:40 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:40 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:40 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:40 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(169), np.int64(0), np.int64(9), np.int64(322), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:40 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:40 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:40 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:40 DEBUG   opendrift:2101: ======================================================================
39:40 INFO    opendrift:2102: 2025-05-18 21:09:03.420424 - step 24 of 96 - 500 active elements (0 deactivated)
39:40 DEBUG   opendrift:2108: 0 elements scheduled.
39:40 DEBUG   opendrift:2110: ======================================================================
39:40 DEBUG   opendrift:2121:                57.54827571138428 <- latitude -> 57.688569223757234
39:40 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.69379558223068
39:40 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> -0.07096217093569779
39:40 DEBUG   opendrift:2122: ---------------------------------
39:40 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:40 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:40 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:40 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:40 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:40 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:40 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:40 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 21:00:00 (before)
                2025-05-18 22:00:00 (after)
39:42 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:42 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:42 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:42 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:42 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:42 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:42 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 41x35x7) for time after (2025-05-18 22:00:00)
39:42 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 21:00:00) in space  (linearNDFast)
39:42 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:42 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 22:00:00) in space  (linearNDFast)
39:42 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:42 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 21:00:00, weight 0.85) and
                      after (2025-05-18 22:00:00, weight 0.15) in time
39:42 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:42 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.30621547318202 degrees.
39:42 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.30621547318202 degrees.
39:42 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:42 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:42 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:42 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:42 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:42 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:42 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:42 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:42 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:42 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:42 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:42 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:42 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:42 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:42 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:42 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:42 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:42 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:42 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:42 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:42 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.189339 (min) 0.171876 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0727423 (min) 0.205289 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.193112 (min) -0.161827 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -4.75637 (min) -4.13344 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -4.96141 (min) -3.85068 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 23.0341 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.98607 (min) 12.6319 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.3937 (min) 33.3057 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000197503 (min) 6.61867e-05 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:42 DEBUG   opendrift:699: No elements hit coastline.
39:42 DEBUG   opendrift:735: Lifting 51 elements to seafloor.
39:42 DEBUG   opendrift:1745: No elements to deactivate
39:42 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:42 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:42 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:42 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 13
39:42 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0]
39:42 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3]
39:42 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 307.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  30.   0.]
 [  2.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:42 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:42 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:42 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:42 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:42 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.033649405182005536
39:42 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:42 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:42 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:42 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:544: 13 elements reached seafloor, interacting with bottom
39:42 DEBUG   opendrift:735: Lifting 13 elements to seafloor.
39:42 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:42 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:42 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:42 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:42 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:42 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(156), np.int64(0), np.int64(9), np.int64(335), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:42 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:42 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:42 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:42 DEBUG   opendrift:2101: ======================================================================
39:42 INFO    opendrift:2102: 2025-05-18 21:39:03.420424 - step 25 of 96 - 500 active elements (0 deactivated)
39:42 DEBUG   opendrift:2108: 0 elements scheduled.
39:42 DEBUG   opendrift:2110: ======================================================================
39:42 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.68976450572182
39:42 DEBUG   opendrift:2121:                10.499197072171345 <- longitude -> 10.698611801233385
39:42 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> -0.11024909927711024
39:42 DEBUG   opendrift:2122: ---------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:42 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:42 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:42 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:42 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 21:00:00 (before)
                2025-05-18 22:00:00 (after)
39:42 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 21:00:00) in space  (linearNDFast)
39:42 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:42 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 22:00:00) in space  (linearNDFast)
39:42 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:42 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 21:00:00, weight 0.35) and
                      after (2025-05-18 22:00:00, weight 0.65) in time
39:42 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:42 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.301399243392126 degrees.
39:42 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.301399243392126 degrees.
39:42 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:42 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:42 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:42 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:42 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:42 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:42 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:42 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:42 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:42 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:42 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:42 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:42 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:42 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:42 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:42 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:42 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:42 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:42 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:42 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:42 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.220491 (min) 0.188991 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0394551 (min) 0.212905 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.21 (min) -0.175827 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -4.4565 (min) -3.85789 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -4.78828 (min) -3.96787 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 22.8497 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.99382 (min) 12.6251 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.3462 (min) 33.3477 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000241356 (min) 2.32599e-05 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:42 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:42 DEBUG   opendrift:699: No elements hit coastline.
39:42 DEBUG   opendrift:735: Lifting 73 elements to seafloor.
39:42 DEBUG   opendrift:1745: No elements to deactivate
39:42 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:42 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:42 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:42 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 5
39:42 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0]
39:42 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3]
39:42 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 312.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  30.   0.]
 [  2.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:42 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:42 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:42 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:42 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:42 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.03040025085011051
39:42 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:42 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:42 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:42 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:544: 5 elements reached seafloor, interacting with bottom
39:42 DEBUG   opendrift:735: Lifting 5 elements to seafloor.
39:42 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:42 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:42 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:42 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:42 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:42 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:42 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(151), np.int64(0), np.int64(9), np.int64(340), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:42 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:42 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:42 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:42 DEBUG   opendrift:2101: ======================================================================
39:42 INFO    opendrift:2102: 2025-05-18 22:09:03.420424 - step 26 of 96 - 500 active elements (0 deactivated)
39:42 DEBUG   opendrift:2108: 0 elements scheduled.
39:42 DEBUG   opendrift:2110: ======================================================================
39:42 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.69162202123446
39:42 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.704004880268332
39:42 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> -0.4913022818296517
39:42 DEBUG   opendrift:2122: ---------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:42 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:42 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:42 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:42 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:42 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 22:00:00 (before)
                2025-05-18 23:00:00 (after)
39:44 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:44 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:44 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:44 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:44 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:44 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:44 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 41x35x7) for time after (2025-05-18 23:00:00)
39:44 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 22:00:00) in space  (linearNDFast)
39:44 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:44 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 23:00:00) in space  (linearNDFast)
39:44 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:44 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 22:00:00, weight 0.85) and
                      after (2025-05-18 23:00:00, weight 0.15) in time
39:44 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:44 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.29600616172495 degrees.
39:44 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.29600616172495 degrees.
39:44 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:44 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:44 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:44 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:44 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:44 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:44 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:44 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:44 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:44 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:44 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:44 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:44 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:44 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:44 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:44 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:44 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:44 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:44 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:44 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:44 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.237207 (min) 0.207119 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: 0.0051976 (min) 0.213123 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.232286 (min) -0.194983 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -4.10682 (min) -3.48126 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -4.83075 (min) -4.27384 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 22.5837 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.95371 (min) 12.6195 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.3846 (min) 33.3991 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000279565 (min) 5.83572e-05 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:44 DEBUG   opendrift:699: No elements hit coastline.
39:44 DEBUG   opendrift:735: Lifting 96 elements to seafloor.
39:44 DEBUG   opendrift:1745: No elements to deactivate
39:44 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:44 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:44 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:44 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 15
39:44 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 3 0 0 0 0 0 3 0 0 0 0 0 0]
39:44 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 0 3 3 3 3 3 0 3 3 3 3 3 3]
39:44 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 325.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  30.   0.]
 [  4.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:44 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:44 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:44 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:44 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:44 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.028590764198548554
39:44 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:44 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:44 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:44 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:544: 13 elements reached seafloor, interacting with bottom
39:44 DEBUG   opendrift:735: Lifting 13 elements to seafloor.
39:44 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:44 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:44 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:44 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:44 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:44 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:44 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:44 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(140), np.int64(0), np.int64(8), np.int64(352), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:44 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:44 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:44 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:44 DEBUG   opendrift:2101: ======================================================================
39:44 INFO    opendrift:2102: 2025-05-18 22:39:03.420424 - step 27 of 96 - 500 active elements (0 deactivated)
39:44 DEBUG   opendrift:2108: 0 elements scheduled.
39:44 DEBUG   opendrift:2110: ======================================================================
39:44 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.69439894350395
39:44 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.709834263860945
39:44 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> -0.00614008020958734
39:44 DEBUG   opendrift:2122: ---------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:44 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:44 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:44 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:44 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 22:00:00 (before)
                2025-05-18 23:00:00 (after)
39:44 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 22:00:00) in space  (linearNDFast)
39:44 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:44 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-18 23:00:00) in space  (linearNDFast)
39:44 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:44 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 22:00:00, weight 0.35) and
                      after (2025-05-18 23:00:00, weight 0.65) in time
39:44 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:44 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.29017678814413 degrees.
39:44 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.29017678814413 degrees.
39:44 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:44 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:44 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:44 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:44 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:44 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:44 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:44 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:44 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:44 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:44 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:44 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:44 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:44 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:44 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:44 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:44 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:44 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:44 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:44 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:44 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.238256 (min) 0.209176 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: 0.00907611 (min) 0.209503 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.266514 (min) -0.226061 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -3.75196 (min) -2.75202 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -5.53889 (min) -4.99015 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 22.3009 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.96014 (min) 12.6166 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.3792 (min) 33.3792 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000304723 (min) 1.15657e-05 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:44 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:44 DEBUG   opendrift:699: No elements hit coastline.
39:44 DEBUG   opendrift:735: Lifting 121 elements to seafloor.
39:44 DEBUG   opendrift:1745: No elements to deactivate
39:44 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:44 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:44 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:44 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 7
39:44 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0]
39:44 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3]
39:44 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 332.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  31.   0.]
 [  4.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:44 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:44 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:44 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:44 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:44 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.03153377136326538
39:44 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:44 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:44 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:44 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:544: 7 elements reached seafloor, interacting with bottom
39:44 DEBUG   opendrift:735: Lifting 7 elements to seafloor.
39:44 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:44 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:44 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:44 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:44 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:44 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:44 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:44 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:44 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(133), np.int64(0), np.int64(7), np.int64(360), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:44 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:44 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:44 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:44 DEBUG   opendrift:2101: ======================================================================
39:44 INFO    opendrift:2102: 2025-05-18 23:09:03.420424 - step 28 of 96 - 500 active elements (0 deactivated)
39:44 DEBUG   opendrift:2108: 0 elements scheduled.
39:44 DEBUG   opendrift:2110: ======================================================================
39:44 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.69751773410012
39:44 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.714697425396496
39:44 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> -0.07759507534677579
39:44 DEBUG   opendrift:2122: ---------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:44 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:44 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:44 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:44 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:44 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 23:00:00 (before)
                2025-05-19 00:00:00 (after)
39:47 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:47 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:47 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:47 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:47 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:47 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:47 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 42x35x7) for time after (2025-05-19 00:00:00)
39:47 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 23:00:00) in space  (linearNDFast)
39:47 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:47 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 00:00:00) in space  (linearNDFast)
39:47 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:47 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 23:00:00, weight 0.85) and
                      after (2025-05-19 00:00:00, weight 0.15) in time
39:47 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:47 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.285313623712085 degrees.
39:47 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.285313623712085 degrees.
39:47 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:47 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:47 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:47 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:47 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:47 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:47 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:47 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:47 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:47 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:47 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:47 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:47 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:47 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:47 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:47 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:47 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:47 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:47 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:47 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:47 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:47 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:47 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.186875 (min) 0.237755 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0101436 (min) 0.244742 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.303633 (min) -0.260674 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -3.82584 (min) -2.40238 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -5.96081 (min) -5.43834 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 22.3388 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.96994 (min) 12.614 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.378 (min) 33.351 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.00032033 (min) -8.534e-06 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:47 DEBUG   opendrift:699: No elements hit coastline.
39:47 DEBUG   opendrift:735: Lifting 136 elements to seafloor.
39:47 DEBUG   opendrift:1745: No elements to deactivate
39:47 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:47 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:47 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:47 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 6
39:47 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0]
39:47 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3]
39:47 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 338.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  32.   0.]
 [  4.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:47 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:47 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:47 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:47 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:47 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.035442987121771075
39:47 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:47 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:47 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:47 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:544: 6 elements reached seafloor, interacting with bottom
39:47 DEBUG   opendrift:735: Lifting 6 elements to seafloor.
39:47 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:47 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:47 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:47 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:47 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:47 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(127), np.int64(0), np.int64(7), np.int64(366), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:47 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:47 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:47 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:47 DEBUG   opendrift:2101: ======================================================================
39:47 INFO    opendrift:2102: 2025-05-18 23:39:03.420424 - step 29 of 96 - 500 active elements (0 deactivated)
39:47 DEBUG   opendrift:2108: 0 elements scheduled.
39:47 DEBUG   opendrift:2110: ======================================================================
39:47 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.700169955279286
39:47 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.714036952192693
39:47 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> -0.2755613200166988
39:47 DEBUG   opendrift:2122: ---------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:47 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:47 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:47 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:47 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-18 23:00:00 (before)
                2025-05-19 00:00:00 (after)
39:47 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-18 23:00:00) in space  (linearNDFast)
39:47 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:47 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 00:00:00) in space  (linearNDFast)
39:47 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:47 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-18 23:00:00, weight 0.35) and
                      after (2025-05-19 00:00:00, weight 0.65) in time
39:47 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:47 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.28597409010901 degrees.
39:47 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.28597409010901 degrees.
39:47 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:47 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:47 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:47 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:47 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:47 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:47 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:47 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:47 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:47 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:47 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:47 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:47 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:47 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:47 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:47 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:47 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:47 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:47 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:47 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:47 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:47 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:47 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.194891 (min) 0.264416 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.025402 (min) 0.248667 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.346908 (min) -0.302679 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -5.08183 (min) -3.26785 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -5.50117 (min) -5.25303 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 22.3182 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.98752 (min) 12.6118 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.4085 (min) 33.3038 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000318022 (min) -3.50073e-06 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:47 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:47 DEBUG   opendrift:699: No elements hit coastline.
39:47 DEBUG   opendrift:735: Lifting 152 elements to seafloor.
39:47 DEBUG   opendrift:1745: No elements to deactivate
39:47 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:47 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:47 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:47 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 8
39:47 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0 0]
39:47 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3 3]
39:47 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 346.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  32.   0.]
 [  4.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:47 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:47 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:47 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:47 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:47 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.03879191924829213
39:47 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:47 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:47 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:47 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:544: 8 elements reached seafloor, interacting with bottom
39:47 DEBUG   opendrift:735: Lifting 8 elements to seafloor.
39:47 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:47 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:47 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:47 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:47 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:47 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:47 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(119), np.int64(0), np.int64(7), np.int64(374), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:47 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:47 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:47 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:47 DEBUG   opendrift:2101: ======================================================================
39:47 INFO    opendrift:2102: 2025-05-19 00:09:03.420424 - step 30 of 96 - 500 active elements (0 deactivated)
39:47 DEBUG   opendrift:2108: 0 elements scheduled.
39:47 DEBUG   opendrift:2110: ======================================================================
39:47 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.70301704706009
39:47 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.72021423847612
39:47 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> -0.5351147339066974
39:47 DEBUG   opendrift:2122: ---------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:47 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:47 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:47 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:47 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:47 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 00:00:00 (before)
                2025-05-19 01:00:00 (after)
39:50 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:50 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:50 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:50 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:50 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:50 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:50 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 43x35x7) for time after (2025-05-19 01:00:00)
39:50 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 00:00:00) in space  (linearNDFast)
39:50 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:50 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 01:00:00) in space  (linearNDFast)
39:50 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:50 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 00:00:00, weight 0.85) and
                      after (2025-05-19 01:00:00, weight 0.15) in time
39:50 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:50 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.27979680648741 degrees.
39:50 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.27979680648741 degrees.
39:50 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:50 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:50 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:50 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:50 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:50 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:50 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:50 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:50 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:50 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:50 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:50 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:50 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:50 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:50 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:50 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:50 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:50 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:50 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:50 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:50 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:50 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:50 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.19814 (min) 0.26081 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0359693 (min) 0.291733 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.389629 (min) -0.343705 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -5.92667 (min) -4.23782 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -5.35704 (min) -4.93506 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 22.5781 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.00385 (min) 12.6088 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8808 (min) 33.2681 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000316729 (min) 4.73208e-05 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:50 DEBUG   opendrift:699: No elements hit coastline.
39:50 DEBUG   opendrift:735: Lifting 167 elements to seafloor.
39:50 DEBUG   opendrift:1745: No elements to deactivate
39:50 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:50 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:50 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:50 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 8
39:50 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 2 0]
39:50 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 0 3]
39:50 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 353.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  32.   0.]
 [  4.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:50 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:50 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:50 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:50 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:50 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.042985651059841375
39:50 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:50 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:50 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:50 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:544: 7 elements reached seafloor, interacting with bottom
39:50 DEBUG   opendrift:735: Lifting 7 elements to seafloor.
39:50 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:50 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:50 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:50 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:50 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:50 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:50 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:50 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(113), np.int64(0), np.int64(5), np.int64(382), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:50 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:50 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:50 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:50 DEBUG   opendrift:2101: ======================================================================
39:50 INFO    opendrift:2102: 2025-05-19 00:39:03.420424 - step 31 of 96 - 500 active elements (0 deactivated)
39:50 DEBUG   opendrift:2108: 0 elements scheduled.
39:50 DEBUG   opendrift:2110: ======================================================================
39:50 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.707107695827794
39:50 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.72642046173094
39:50 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> -0.5689350943628813
39:50 DEBUG   opendrift:2122: ---------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:50 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:50 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:50 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:50 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 00:00:00 (before)
                2025-05-19 01:00:00 (after)
39:50 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 00:00:00) in space  (linearNDFast)
39:50 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:50 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 01:00:00) in space  (linearNDFast)
39:50 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:50 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 00:00:00, weight 0.35) and
                      after (2025-05-19 01:00:00, weight 0.65) in time
39:50 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:50 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.273590567527684 degrees.
39:50 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.273590567527684 degrees.
39:50 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:50 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:50 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:50 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:50 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:50 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:50 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:50 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:50 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:50 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:50 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:50 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:50 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:50 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:50 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:50 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:50 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:50 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:50 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:50 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:50 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:50 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:50 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.166982 (min) 0.267299 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0395392 (min) 0.324988 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.430413 (min) -0.382479 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -5.69206 (min) -5.28819 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -5.47986 (min) -5.21312 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 22.8285 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.04502 (min) 12.6038 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8736 (min) 33.1507 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000307874 (min) 0.000111641 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:50 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:50 DEBUG   opendrift:699: No elements hit coastline.
39:50 DEBUG   opendrift:735: Lifting 182 elements to seafloor.
39:50 DEBUG   opendrift:1745: No elements to deactivate
39:50 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:50 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:50 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:50 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 5
39:50 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 3 0 3 0]
39:50 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 0 3 0 3]
39:50 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 356.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  33.   0.]
 [  6.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:50 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:50 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:50 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:50 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:50 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04467598476509279
39:50 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:50 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:50 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:50 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:544: 3 elements reached seafloor, interacting with bottom
39:50 DEBUG   opendrift:735: Lifting 3 elements to seafloor.
39:50 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:50 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:50 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:50 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:50 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:50 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:50 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(112), np.int64(0), np.int64(5), np.int64(383), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:50 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:50 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:50 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:50 DEBUG   opendrift:2101: ======================================================================
39:50 INFO    opendrift:2102: 2025-05-19 01:09:03.420424 - step 32 of 96 - 500 active elements (0 deactivated)
39:50 DEBUG   opendrift:2108: 0 elements scheduled.
39:50 DEBUG   opendrift:2110: ======================================================================
39:50 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.7122762778086
39:50 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.731050370361464
39:50 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> -0.611901865875331
39:50 DEBUG   opendrift:2122: ---------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:50 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:50 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:50 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:50 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:50 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 01:00:00 (before)
                2025-05-19 02:00:00 (after)
39:52 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:52 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:52 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:52 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:52 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:52 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:52 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 45x35x7) for time after (2025-05-19 02:00:00)
39:52 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 01:00:00) in space  (linearNDFast)
39:52 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:52 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 02:00:00) in space  (linearNDFast)
39:52 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:52 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 01:00:00, weight 0.85) and
                      after (2025-05-19 02:00:00, weight 0.15) in time
39:52 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:52 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.26896067090522 degrees.
39:52 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.26896067090522 degrees.
39:52 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:52 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:52 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:52 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:52 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:52 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:52 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:52 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:52 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:52 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:52 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:52 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:52 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:52 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:52 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:52 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:52 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:52 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:52 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.11194 (min) 0.328326 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0378835 (min) 0.358331 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.464416 (min) -0.416875 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -6.14359 (min) -4.88123 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -5.75553 (min) -5.25148 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 23.0268 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.08713 (min) 12.5989 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.2111 (min) 33.0451 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000291503 (min) 0.000166399 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:52 DEBUG   opendrift:699: No elements hit coastline.
39:52 DEBUG   opendrift:735: Lifting 204 elements to seafloor.
39:52 DEBUG   opendrift:1745: No elements to deactivate
39:52 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:52 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:52 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:52 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 9
39:52 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 3 0 3 0 3 0 0]
39:52 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 0 3 0 3 0 3 3]
39:52 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 362.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  33.   0.]
 [  9.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:52 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:52 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:52 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:52 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:52 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04838383380956252
39:52 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:52 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:52 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:52 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:544: 6 elements reached seafloor, interacting with bottom
39:52 DEBUG   opendrift:735: Lifting 6 elements to seafloor.
39:52 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:52 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:52 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:52 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:52 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:52 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(109), np.int64(0), np.int64(5), np.int64(386), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:52 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:52 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:52 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:52 DEBUG   opendrift:2101: ======================================================================
39:52 INFO    opendrift:2102: 2025-05-19 01:39:03.420424 - step 33 of 96 - 500 active elements (0 deactivated)
39:52 DEBUG   opendrift:2108: 0 elements scheduled.
39:52 DEBUG   opendrift:2110: ======================================================================
39:52 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.71799187903115
39:52 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.730136949200379
39:52 DEBUG   opendrift:2121:                -21.859811782836914 <- z -> -0.2440100183688797
39:52 DEBUG   opendrift:2122: ---------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:52 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:52 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:52 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 01:00:00 (before)
                2025-05-19 02:00:00 (after)
39:52 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 01:00:00) in space  (linearNDFast)
39:52 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:52 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 02:00:00) in space  (linearNDFast)
39:52 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:52 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 01:00:00, weight 0.35) and
                      after (2025-05-19 02:00:00, weight 0.65) in time
39:52 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:52 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.2698740926633 degrees.
39:52 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.2698740926633 degrees.
39:52 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:52 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:52 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:52 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:52 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:52 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:52 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:52 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:52 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:52 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:52 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:52 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:52 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:52 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:52 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:52 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:52 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:52 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:52 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.0992876 (min) 0.351309 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0374173 (min) 0.366869 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.482078 (min) -0.44115 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -5.01423 (min) -4.31286 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -5.8695 (min) -5.18006 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 23.0419 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.14631 (min) 12.6124 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8625 (min) 32.9089 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000479352 (min) 0.000199043 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:52 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:52 DEBUG   opendrift:699: No elements hit coastline.
39:52 DEBUG   opendrift:735: Lifting 387 elements to seafloor.
39:52 DEBUG   opendrift:1745: No elements to deactivate
39:52 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:52 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:52 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:52 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 5
39:52 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3 0 0 0 0]
39:52 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0 3 3 3 3]
39:52 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 366.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  33.   0.]
 [ 10.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:52 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:52 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:52 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:52 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:52 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.03972421426571777
39:52 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:52 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:52 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:52 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:544: 4 elements reached seafloor, interacting with bottom
39:52 DEBUG   opendrift:735: Lifting 4 elements to seafloor.
39:52 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:52 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:52 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:52 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:52 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:52 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:52 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(106), np.int64(0), np.int64(5), np.int64(389), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:52 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:52 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:52 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:52 DEBUG   opendrift:2101: ======================================================================
39:52 INFO    opendrift:2102: 2025-05-19 02:09:03.420424 - step 34 of 96 - 500 active elements (0 deactivated)
39:52 DEBUG   opendrift:2108: 0 elements scheduled.
39:52 DEBUG   opendrift:2110: ======================================================================
39:52 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.72392084081173
39:52 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.732236026892057
39:52 DEBUG   opendrift:2121:                -21.857187271118164 <- z -> -0.2991029020566698
39:52 DEBUG   opendrift:2122: ---------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:52 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:52 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:52 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:52 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 02:00:00 (before)
                2025-05-19 03:00:00 (after)
39:55 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:55 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:55 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:55 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:55 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:55 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:55 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 47x35x7) for time after (2025-05-19 03:00:00)
39:55 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 02:00:00) in space  (linearNDFast)
39:55 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:55 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
39:55 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
39:55 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
39:55 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
39:55 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
39:55 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
39:55 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
39:55 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 03:00:00) in space  (linearNDFast)
39:55 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:55 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
39:55 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
39:55 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
39:55 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
39:55 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
39:55 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
39:55 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
39:55 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 02:00:00, weight 0.85) and
                      after (2025-05-19 03:00:00, weight 0.15) in time
39:55 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:55 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.26777502111247 degrees.
39:55 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.26777502111247 degrees.
39:55 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:55 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:55 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:55 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:55 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:55 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:55 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:55 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:55 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:55 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:55 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:55 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:55 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:55 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:55 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:55 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:55 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:55 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:55 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:55 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:55 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:55 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:55 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.0908037 (min) 0.355308 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0261617 (min) 0.402868 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.488555 (min) -0.456669 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -4.01972 (min) -3.74979 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -6.01975 (min) -5.12656 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 23.1847 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.12888 (min) 12.6217 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.6675 (min) 32.9812 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000473114 (min) 0.00024161 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:55 DEBUG   opendrift:699: No elements hit coastline.
39:55 DEBUG   opendrift:735: Lifting 391 elements to seafloor.
39:55 DEBUG   opendrift:1745: No elements to deactivate
39:55 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:55 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:55 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:55 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 7
39:55 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0]
39:55 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3]
39:55 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 373.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  33.   0.]
 [ 10.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:55 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:55 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:55 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:55 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:55 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.03635051950911014
39:55 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:55 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:55 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:55 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:544: 7 elements reached seafloor, interacting with bottom
39:55 DEBUG   opendrift:735: Lifting 7 elements to seafloor.
39:55 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:55 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:55 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:55 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:55 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:55 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(99), np.int64(0), np.int64(5), np.int64(396), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:55 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:55 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:55 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:55 DEBUG   opendrift:2101: ======================================================================
39:55 INFO    opendrift:2102: 2025-05-19 02:39:03.420424 - step 35 of 96 - 500 active elements (0 deactivated)
39:55 DEBUG   opendrift:2108: 0 elements scheduled.
39:55 DEBUG   opendrift:2110: ======================================================================
39:55 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.730431656982795
39:55 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.736342299808294
39:55 DEBUG   opendrift:2121:                -21.842363357543945 <- z -> -0.3419440320507998
39:55 DEBUG   opendrift:2122: ---------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:55 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:55 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:55 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:55 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 02:00:00 (before)
                2025-05-19 03:00:00 (after)
39:55 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 02:00:00) in space  (linearNDFast)
39:55 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:55 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 03:00:00) in space  (linearNDFast)
39:55 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:55 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 02:00:00, weight 0.35) and
                      after (2025-05-19 03:00:00, weight 0.65) in time
39:55 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:55 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.26366874356917 degrees.
39:55 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.26366874356917 degrees.
39:55 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:55 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:55 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:55 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:55 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:55 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:55 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:55 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:55 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:55 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:55 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:55 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:55 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:55 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:55 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:55 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:55 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:55 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:55 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:55 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:55 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:55 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:55 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.126915 (min) 0.272078 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0292927 (min) 0.375078 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.478053 (min) -0.451944 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -3.60123 (min) -3.1352 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -6.10013 (min) -5.11638 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 23.3518 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.18709 (min) 12.6216 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.5636 (min) 32.9208 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000206938 (min) 0.000277752 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:55 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:55 DEBUG   opendrift:699: No elements hit coastline.
39:55 DEBUG   opendrift:730: No elements hit seafloor.
39:55 DEBUG   opendrift:1745: No elements to deactivate
39:55 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:55 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:55 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:55 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 5
39:55 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0]
39:55 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3]
39:55 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 378.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  33.   0.]
 [ 10.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:55 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:55 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:55 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:55 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:55 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.03616619431423983
39:55 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:55 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:55 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:55 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:544: 5 elements reached seafloor, interacting with bottom
39:55 DEBUG   opendrift:735: Lifting 5 elements to seafloor.
39:55 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
39:55 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
39:55 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:55 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:55 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:55 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:55 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:55 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:55 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(94), np.int64(0), np.int64(4), np.int64(402), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:55 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:55 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:55 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:55 DEBUG   opendrift:2101: ======================================================================
39:55 INFO    opendrift:2102: 2025-05-19 03:09:03.420424 - step 36 of 96 - 500 active elements (0 deactivated)
39:55 DEBUG   opendrift:2108: 0 elements scheduled.
39:55 DEBUG   opendrift:2110: ======================================================================
39:55 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.736493449876924
39:55 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.739865699534262
39:55 DEBUG   opendrift:2121:                -21.842363357543945 <- z -> 0.0
39:55 DEBUG   opendrift:2122: ---------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:55 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:55 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:55 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:55 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:55 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 03:00:00 (before)
                2025-05-19 04:00:00 (after)
39:57 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:57 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:57 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:57 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:57 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:57 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:57 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 49x35x7) for time after (2025-05-19 04:00:00)
39:57 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 03:00:00) in space  (linearNDFast)
39:57 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:57 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 04:00:00) in space  (linearNDFast)
39:57 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:57 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 03:00:00, weight 0.85) and
                      after (2025-05-19 04:00:00, weight 0.15) in time
39:57 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:57 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.26014534440323 degrees.
39:57 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.26014534440323 degrees.
39:57 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:57 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:57 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:57 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:57 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:57 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:57 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:57 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:57 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:57 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:57 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:57 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:57 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:57 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:57 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:57 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:57 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:57 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:57 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.15021 (min) 0.244427 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0245246 (min) 0.456386 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.463128 (min) -0.438431 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -3.45687 (min) -2.67676 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -6.26905 (min) -5.17633 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 23.5679 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.26066 (min) 12.6025 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8627 (min) 32.7229 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000179691 (min) 0.000312351 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:57 DEBUG   opendrift:699: No elements hit coastline.
39:57 DEBUG   opendrift:730: No elements hit seafloor.
39:57 DEBUG   opendrift:1745: No elements to deactivate
39:57 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:57 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:57 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:57 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 4
39:57 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0]
39:57 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3]
39:57 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 382.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  34.   0.]
 [ 10.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:57 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:57 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:57 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:57 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:57 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.03695457728572602
39:57 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:57 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:57 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:57 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:544: 4 elements reached seafloor, interacting with bottom
39:57 DEBUG   opendrift:735: Lifting 4 elements to seafloor.
39:57 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:57 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:57 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:57 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:57 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:57 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(90), np.int64(0), np.int64(4), np.int64(406), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:57 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:57 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:57 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:57 DEBUG   opendrift:2101: ======================================================================
39:57 INFO    opendrift:2102: 2025-05-19 03:39:03.420424 - step 37 of 96 - 500 active elements (0 deactivated)
39:57 DEBUG   opendrift:2108: 0 elements scheduled.
39:57 DEBUG   opendrift:2110: ======================================================================
39:57 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.74386948293511
39:57 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.744695879329727
39:57 DEBUG   opendrift:2121:                -21.842363357543945 <- z -> -0.01487418642254501
39:57 DEBUG   opendrift:2122: ---------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:57 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:57 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:57 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 03:00:00 (before)
                2025-05-19 04:00:00 (after)
39:57 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 03:00:00) in space  (linearNDFast)
39:57 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:57 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 04:00:00) in space  (linearNDFast)
39:57 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:57 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 03:00:00, weight 0.35) and
                      after (2025-05-19 04:00:00, weight 0.65) in time
39:57 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:57 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.25531515664315 degrees.
39:57 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.25531515664315 degrees.
39:57 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:57 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:57 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:57 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:57 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:57 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:57 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:57 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:57 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:57 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:57 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:57 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:57 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:57 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:57 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:57 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:57 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:57 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:57 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.156944 (min) 0.217848 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0267239 (min) 0.471207 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.426914 (min) -0.405082 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -3.36048 (min) -2.73531 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -6.64272 (min) -5.39846 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 23.8318 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.19712 (min) 12.5703 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8846 (min) 32.9121 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000148903 (min) 0.000335079 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:57 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:57 DEBUG   opendrift:699: No elements hit coastline.
39:57 DEBUG   opendrift:730: No elements hit seafloor.
39:57 DEBUG   opendrift:1745: No elements to deactivate
39:57 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:57 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:57 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:57 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
39:57 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3]
39:57 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0]
39:57 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 382.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  34.   0.]
 [ 11.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:57 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:57 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:57 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:57 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:57 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04003201368708481
39:57 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:57 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:57 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:57 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
39:57 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:57 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:57 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:57 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:57 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:57 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(91), np.int64(0), np.int64(4), np.int64(405), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:57 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:57 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:57 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:57 DEBUG   opendrift:2101: ======================================================================
39:57 INFO    opendrift:2102: 2025-05-19 04:09:03.420424 - step 38 of 96 - 500 active elements (0 deactivated)
39:57 DEBUG   opendrift:2108: 0 elements scheduled.
39:57 DEBUG   opendrift:2110: ======================================================================
39:57 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.751485069943
39:57 DEBUG   opendrift:2121:                10.499197072171349 <- longitude -> 10.750548524784667
39:57 DEBUG   opendrift:2121:                -21.842363357543945 <- z -> 0.0
39:57 DEBUG   opendrift:2122: ---------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:57 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:57 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:57 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:57 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 04:00:00 (before)
                2025-05-19 05:00:00 (after)
39:59 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
39:59 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
39:59 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
39:59 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
39:59 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
39:59 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
39:59 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 51x35x7) for time after (2025-05-19 05:00:00)
39:59 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 04:00:00) in space  (linearNDFast)
39:59 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:59 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 05:00:00) in space  (linearNDFast)
39:59 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
39:59 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 04:00:00, weight 0.85) and
                      after (2025-05-19 05:00:00, weight 0.15) in time
39:59 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
39:59 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.24946249835473 degrees.
39:59 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.24946249835473 degrees.
39:59 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:59 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:59 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
39:59 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:59 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
39:59 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:59 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:59 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
39:59 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:59 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:59 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:59 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:59 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
39:59 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:59 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
39:59 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:59 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:59 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
39:59 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
39:59 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
39:59 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
39:59 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
39:59 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
39:59 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
39:59 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
39:59 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
39:59 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
39:59 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
39:59 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
39:59 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.157276 (min) 0.222993 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0385179 (min) 0.47224 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.388791 (min) -0.368156 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -3.39109 (min) -2.78326 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -6.96243 (min) -5.59037 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 25.7644 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.12142 (min) 12.5652 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8983 (min) 33.0764 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000105718 (min) 0.000529308 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
39:59 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
39:59 DEBUG   opendrift:699: No elements hit coastline.
39:59 DEBUG   opendrift:730: No elements hit seafloor.
39:59 DEBUG   opendrift:1745: No elements to deactivate
39:59 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
39:59 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
39:59 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
39:59 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 4
39:59 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 3]
39:59 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 0]
39:59 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 385.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  34.   0.]
 [ 12.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
39:59 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:59 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:59 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
39:59 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
39:59 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04334310636831531
39:59 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
39:59 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
39:59 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
39:59 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:544: 3 elements reached seafloor, interacting with bottom
39:59 DEBUG   opendrift:735: Lifting 3 elements to seafloor.
39:59 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
39:59 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
39:59 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
39:59 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
39:59 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
39:59 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(89), np.int64(0), np.int64(4), np.int64(407), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
39:59 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
39:59 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
39:59 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
39:59 DEBUG   opendrift:2101: ======================================================================
39:59 INFO    opendrift:2102: 2025-05-19 04:39:03.420424 - step 39 of 96 - 500 active elements (0 deactivated)
39:59 DEBUG   opendrift:2108: 0 elements scheduled.
39:59 DEBUG   opendrift:2110: ======================================================================
39:59 DEBUG   opendrift:2121:                57.54827571138428 <- latitude -> 57.759117324450166
39:59 DEBUG   opendrift:2121:                10.49919707217135 <- longitude -> 10.757277394166945
39:59 DEBUG   opendrift:2121:                -21.842363357543945 <- z -> -0.010941786743900117
39:59 DEBUG   opendrift:2122: ---------------------------------
39:59 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
39:59 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
39:59 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
39:59 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
39:59 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
39:59 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
39:59 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
39:59 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 04:00:00 (before)
                2025-05-19 05:00:00 (after)
39:59 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 04:00:00) in space  (linearNDFast)
39:59 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:00 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 05:00:00) in space  (linearNDFast)
40:00 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:00 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 04:00:00, weight 0.35) and
                      after (2025-05-19 05:00:00, weight 0.65) in time
40:00 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:00 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.24273362928937 degrees.
40:00 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.24273362928937 degrees.
40:00 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:00 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:00 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:00 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:00 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:00 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:00 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:00 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:00 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:00 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:00 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:00 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:00 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:00 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:00 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:00 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:00 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:00 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:00 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:00 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:00 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:00 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:00 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:00 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:00 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:00 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:00 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:00 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.150619 (min) 0.200327 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.207072 (min) 0.407902 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.346258 (min) -0.325616 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -3.69771 (min) -2.46942 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -7.15738 (min) -5.71241 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 31.3858 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 9.07799 (min) 12.5645 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.5716 (min) 33.1782 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -4.02133e-05 (min) 0.000465696 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:00 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:00 DEBUG   opendrift:699: No elements hit coastline.
40:00 DEBUG   opendrift:730: No elements hit seafloor.
40:00 DEBUG   opendrift:1745: No elements to deactivate
40:00 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:00 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:00 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:00 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 3
40:00 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 3]
40:00 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 0]
40:00 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 387.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  34.   0.]
 [ 13.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:00 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:00 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:00 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:00 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:00 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04690287036588147
40:00 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:00 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:00 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:00 DEBUG   opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
40:00 DEBUG   opendrift:735: Lifting 2 elements to seafloor.
40:00 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:00 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
40:00 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:00 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:00 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:00 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:00 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(88), np.int64(0), np.int64(4), np.int64(408), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:00 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:00 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:00 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:00 DEBUG   opendrift:2101: ======================================================================
40:00 INFO    opendrift:2102: 2025-05-19 05:09:03.420424 - step 40 of 96 - 500 active elements (0 deactivated)
40:00 DEBUG   opendrift:2108: 0 elements scheduled.
40:00 DEBUG   opendrift:2110: ======================================================================
40:00 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.76570972984339
40:00 DEBUG   opendrift:2121:                10.49919707217135 <- longitude -> 10.758227207193336
40:00 DEBUG   opendrift:2121:                -23.509148329683164 <- z -> -0.009497883294165899
40:00 DEBUG   opendrift:2122: ---------------------------------
40:00 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:00 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:00 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:00 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:00 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:00 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:00 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:00 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 05:00:00 (before)
                2025-05-19 06:00:00 (after)
40:02 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:02 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:02 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:02 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:02 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:02 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:02 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 52x35x7) for time after (2025-05-19 06:00:00)
40:02 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 05:00:00) in space  (linearNDFast)
40:02 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:02 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 06:00:00) in space  (linearNDFast)
40:02 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:02 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 05:00:00, weight 0.85) and
                      after (2025-05-19 06:00:00, weight 0.15) in time
40:02 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:02 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.24178381847034 degrees.
40:02 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.24178381847034 degrees.
40:02 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:02 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:02 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:02 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:02 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:02 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:02 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:02 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:02 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:02 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:02 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:02 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:02 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:02 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:02 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:02 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:02 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:02 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:02 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.14224 (min) 0.219403 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.269746 (min) 0.361946 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.306159 (min) -0.286712 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -3.60085 (min) -1.94754 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -7.32101 (min) -5.82185 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 37.4727 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.43655 (min) 12.5648 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.3366 (min) 34.3714 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -1.54167e-05 (min) 0.00103459 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:02 DEBUG   opendrift:699: No elements hit coastline.
40:02 DEBUG   opendrift:730: No elements hit seafloor.
40:02 DEBUG   opendrift:1745: No elements to deactivate
40:02 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:02 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:02 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:02 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
40:02 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0]
40:02 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3]
40:02 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 388.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  34.   0.]
 [ 13.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:02 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:02 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:02 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:02 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:02 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04810403091750637
40:02 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:02 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:02 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:02 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:02 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:02 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:02 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:02 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:02 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:02 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(87), np.int64(0), np.int64(4), np.int64(409), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:02 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:02 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:02 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:02 DEBUG   opendrift:2101: ======================================================================
40:02 INFO    opendrift:2102: 2025-05-19 05:39:03.420424 - step 41 of 96 - 500 active elements (0 deactivated)
40:02 DEBUG   opendrift:2108: 0 elements scheduled.
40:02 DEBUG   opendrift:2110: ======================================================================
40:02 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.77155938692638
40:02 DEBUG   opendrift:2121:                10.49919707217135 <- longitude -> 10.761962360396089
40:02 DEBUG   opendrift:2121:                -21.842363357543945 <- z -> 0.0
40:02 DEBUG   opendrift:2122: ---------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:02 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:02 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:02 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 05:00:00 (before)
                2025-05-19 06:00:00 (after)
40:02 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 05:00:00) in space  (linearNDFast)
40:02 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:02 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 06:00:00) in space  (linearNDFast)
40:02 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:02 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 05:00:00, weight 0.35) and
                      after (2025-05-19 06:00:00, weight 0.65) in time
40:02 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:02 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.2380486850398 degrees.
40:02 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.2380486850398 degrees.
40:02 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:02 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:02 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:02 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:02 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:02 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:02 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:02 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:02 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:02 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:02 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:02 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:02 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:02 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:02 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:02 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:02 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:02 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:02 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.163433 (min) 0.250513 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.349867 (min) 0.316188 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.274522 (min) -0.254724 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -2.6279 (min) -1.36188 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -7.41225 (min) -6.02866 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 43.7492 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.63347 (min) 12.5673 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.3495 (min) 34.1007 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -2.07232e-05 (min) 0.000688863 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:02 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:02 DEBUG   opendrift:699: No elements hit coastline.
40:02 DEBUG   opendrift:730: No elements hit seafloor.
40:02 DEBUG   opendrift:1745: No elements to deactivate
40:02 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:02 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:02 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:02 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
40:02 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0]
40:02 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3]
40:02 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 390.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  34.   0.]
 [ 13.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:02 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:02 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:02 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:02 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:02 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04448231797923174
40:02 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:02 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:02 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
40:02 DEBUG   opendrift:735: Lifting 2 elements to seafloor.
40:02 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:02 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:02 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:02 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:02 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:02 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:02 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(85), np.int64(0), np.int64(4), np.int64(411), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:02 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:02 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:02 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:02 DEBUG   opendrift:2101: ======================================================================
40:02 INFO    opendrift:2102: 2025-05-19 06:09:03.420424 - step 42 of 96 - 500 active elements (0 deactivated)
40:02 DEBUG   opendrift:2108: 0 elements scheduled.
40:02 DEBUG   opendrift:2110: ======================================================================
40:02 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.77666951206759
40:02 DEBUG   opendrift:2121:                10.49919707217135 <- longitude -> 10.769521128504834
40:02 DEBUG   opendrift:2121:                -24.305995372057154 <- z -> 0.0
40:02 DEBUG   opendrift:2122: ---------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:02 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:02 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:02 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:02 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 06:00:00 (before)
                2025-05-19 07:00:00 (after)
40:05 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:05 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:05 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:05 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:05 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:05 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:05 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 54x36x7) for time after (2025-05-19 07:00:00)
40:05 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 06:00:00) in space  (linearNDFast)
40:05 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:05 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 07:00:00) in space  (linearNDFast)
40:05 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:05 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 06:00:00, weight 0.85) and
                      after (2025-05-19 07:00:00, weight 0.15) in time
40:05 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:05 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:05 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:05 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:05 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:05 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:05 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:05 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:05 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:05 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:05 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:05 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:05 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:05 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:05 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:05 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:05 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:05 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:05 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:05 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:05 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:05 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:05 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:05 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.202231 (min) 0.178362 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.345243 (min) 0.232097 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.248936 (min) -0.226475 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -1.87036 (min) -1.04379 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -7.3533 (min) -5.86456 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 49.8673 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.58076 (min) 12.5736 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.3636 (min) 34.185 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -4.14796e-05 (min) 0.000600532 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:05 DEBUG   opendrift:699: No elements hit coastline.
40:05 DEBUG   opendrift:730: No elements hit seafloor.
40:05 DEBUG   opendrift:1745: No elements to deactivate
40:05 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:05 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:05 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:05 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
40:05 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0]
40:05 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3]
40:05 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 392.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  34.   0.]
 [ 13.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:05 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:05 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:05 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:05 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:05 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.041201491911592954
40:05 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:05 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:05 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:05 DEBUG   opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
40:05 DEBUG   opendrift:735: Lifting 2 elements to seafloor.
40:05 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:05 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:05 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:05 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:05 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:05 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(83), np.int64(0), np.int64(4), np.int64(413), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:05 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:05 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:05 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:05 DEBUG   opendrift:2101: ======================================================================
40:05 INFO    opendrift:2102: 2025-05-19 06:39:03.420424 - step 43 of 96 - 500 active elements (0 deactivated)
40:05 DEBUG   opendrift:2108: 0 elements scheduled.
40:05 DEBUG   opendrift:2110: ======================================================================
40:05 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.77945829527634
40:05 DEBUG   opendrift:2121:                10.49919707217135 <- longitude -> 10.769521128504834
40:05 DEBUG   opendrift:2121:                -24.684011459350586 <- z -> 0.0
40:05 DEBUG   opendrift:2122: ---------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:05 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:05 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:05 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:05 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 06:00:00 (before)
                2025-05-19 07:00:00 (after)
40:05 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 06:00:00) in space  (linearNDFast)
40:05 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:05 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 07:00:00) in space  (linearNDFast)
40:05 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:05 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 06:00:00, weight 0.35) and
                      after (2025-05-19 07:00:00, weight 0.65) in time
40:05 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:05 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:05 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:05 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:05 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:05 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:05 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:05 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:05 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:05 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:05 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:05 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:05 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:05 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:05 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:05 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:05 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:05 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:05 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:05 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:05 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:05 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:05 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:05 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.195137 (min) 0.202798 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.328143 (min) 0.280281 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.231774 (min) -0.206569 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -1.56233 (min) -0.751307 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -6.94708 (min) -4.99464 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 53.3396 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.68686 (min) 12.5886 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.0953 (min) 33.9926 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -6.96468e-05 (min) 0.000398797 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:05 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:05 DEBUG   opendrift:699: No elements hit coastline.
40:05 DEBUG   opendrift:730: No elements hit seafloor.
40:05 DEBUG   opendrift:1745: No elements to deactivate
40:05 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:05 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:05 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:05 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
40:05 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0]
40:05 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3]
40:05 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 394.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  34.   0.]
 [ 13.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:05 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:05 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:05 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:05 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:05 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.03618812198681864
40:05 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:05 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:05 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:05 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
40:05 DEBUG   opendrift:735: Lifting 2 elements to seafloor.
40:05 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:05 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:05 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:05 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:05 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:05 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:05 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(81), np.int64(0), np.int64(4), np.int64(415), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:05 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:05 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:05 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:05 DEBUG   opendrift:2101: ======================================================================
40:05 INFO    opendrift:2102: 2025-05-19 07:09:03.420424 - step 44 of 96 - 500 active elements (0 deactivated)
40:05 DEBUG   opendrift:2108: 0 elements scheduled.
40:05 DEBUG   opendrift:2110: ======================================================================
40:05 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.77932308431803
40:05 DEBUG   opendrift:2121:                10.49919707217135 <- longitude -> 10.769521128504834
40:05 DEBUG   opendrift:2121:                -24.684011459350586 <- z -> -0.20713273281465672
40:05 DEBUG   opendrift:2122: ---------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:05 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:05 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:05 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:05 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:05 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 07:00:00 (before)
                2025-05-19 08:00:00 (after)
40:08 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:08 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:08 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:08 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:08 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:08 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:08 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 53x37x7) for time after (2025-05-19 08:00:00)
40:08 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 07:00:00) in space  (linearNDFast)
40:08 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:08 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 08:00:00) in space  (linearNDFast)
40:08 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:08 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 07:00:00, weight 0.85) and
                      after (2025-05-19 08:00:00, weight 0.15) in time
40:08 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:08 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:08 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:08 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:08 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:08 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:08 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:08 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:08 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:08 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:08 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:08 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:08 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:08 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:08 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:08 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:08 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:08 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:08 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:08 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:08 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:08 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.209391 (min) 0.212072 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.33144 (min) 0.294952 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.218206 (min) -0.188578 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -1.67893 (min) -0.36313 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -6.40819 (min) -4.34186 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 53.5635 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.26732 (min) 12.6079 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.1821 (min) 34.5959 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -9.29026e-05 (min) 0.000461949 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:08 DEBUG   opendrift:699: No elements hit coastline.
40:08 DEBUG   opendrift:730: No elements hit seafloor.
40:08 DEBUG   opendrift:1745: No elements to deactivate
40:08 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:08 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:08 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:08 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
40:08 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0]
40:08 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3]
40:08 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 395.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  34.   0.]
 [ 13.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:08 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:08 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:08 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:08 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:08 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.030638147209642034
40:08 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:08 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:08 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:08 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:08 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:08 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:08 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:08 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:08 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:08 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:08 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(80), np.int64(0), np.int64(4), np.int64(416), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:08 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:08 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:08 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:08 DEBUG   opendrift:2101: ======================================================================
40:08 INFO    opendrift:2102: 2025-05-19 07:39:03.420424 - step 45 of 96 - 500 active elements (0 deactivated)
40:08 DEBUG   opendrift:2108: 0 elements scheduled.
40:08 DEBUG   opendrift:2110: ======================================================================
40:08 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.77867354960978
40:08 DEBUG   opendrift:2121:                10.49919707217135 <- longitude -> 10.769521128504831
40:08 DEBUG   opendrift:2121:                -24.684011459350586 <- z -> 0.0
40:08 DEBUG   opendrift:2122: ---------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:08 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:08 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:08 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 07:00:00 (before)
                2025-05-19 08:00:00 (after)
40:08 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 07:00:00) in space  (linearNDFast)
40:08 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:08 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 08:00:00) in space  (linearNDFast)
40:08 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:08 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 07:00:00, weight 0.35) and
                      after (2025-05-19 08:00:00, weight 0.65) in time
40:08 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:08 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:08 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:08 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:08 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:08 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:08 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:08 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:08 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:08 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:08 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:08 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:08 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:08 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:08 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:08 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:08 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:08 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:08 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:08 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:08 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:08 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.222215 (min) 0.243908 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.307515 (min) 0.28051 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.211558 (min) -0.176957 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -1.68058 (min) -0.139332 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -5.51399 (min) -4.03082 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 52.9965 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.21559 (min) 12.6372 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8469 (min) 34.6608 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000109661 (min) 0.000373578 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:08 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:08 DEBUG   opendrift:699: No elements hit coastline.
40:08 DEBUG   opendrift:730: No elements hit seafloor.
40:08 DEBUG   opendrift:1745: No elements to deactivate
40:08 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:08 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:08 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:08 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
40:08 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0]
40:08 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3]
40:08 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 397.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  34.   0.]
 [ 13.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:08 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:08 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:08 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:08 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:08 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.022521466159256785
40:08 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:08 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:08 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
40:08 DEBUG   opendrift:735: Lifting 2 elements to seafloor.
40:08 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:08 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:08 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:08 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:08 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:08 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:08 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(78), np.int64(0), np.int64(4), np.int64(418), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:08 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:08 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:08 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:08 DEBUG   opendrift:2101: ======================================================================
40:08 INFO    opendrift:2102: 2025-05-19 08:09:03.420424 - step 46 of 96 - 500 active elements (0 deactivated)
40:08 DEBUG   opendrift:2108: 0 elements scheduled.
40:08 DEBUG   opendrift:2110: ======================================================================
40:08 DEBUG   opendrift:2121:                57.54827571138428 <- latitude -> 57.778076019992916
40:08 DEBUG   opendrift:2121:                10.49919707217135 <- longitude -> 10.769521128504834
40:08 DEBUG   opendrift:2121:                -24.684011459350586 <- z -> 0.0
40:08 DEBUG   opendrift:2122: ---------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:08 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:08 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:08 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:08 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 08:00:00 (before)
                2025-05-19 09:00:00 (after)
40:11 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:11 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:11 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:11 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:11 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:11 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:11 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 53x37x7) for time after (2025-05-19 09:00:00)
40:11 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 08:00:00) in space  (linearNDFast)
40:11 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:11 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 09:00:00) in space  (linearNDFast)
40:11 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:11 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 08:00:00, weight 0.85) and
                      after (2025-05-19 09:00:00, weight 0.15) in time
40:11 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:11 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:11 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:11 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:11 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:11 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:11 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:11 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:11 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:11 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:11 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:11 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:11 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:11 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:11 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:11 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:11 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:11 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:11 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:11 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:11 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:11 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:11 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:11 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.249131 (min) 0.242323 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.250278 (min) 0.155298 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.208129 (min) -0.167382 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -1.61759 (min) 0.387056 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -4.72829 (min) -3.14985 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 52.4888 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.27232 (min) 12.6682 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8108 (min) 34.5934 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000130155 (min) 0.000333357 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:11 DEBUG   opendrift:699: No elements hit coastline.
40:11 DEBUG   opendrift:730: No elements hit seafloor.
40:11 DEBUG   opendrift:1745: No elements to deactivate
40:11 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:11 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:11 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:11 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 9
40:11 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 0 0 0 0 0]
40:11 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 3 3 3 3 3]
40:11 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 406.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  34.   0.]
 [ 13.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:11 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:11 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:11 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:11 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:11 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.016444505261595622
40:11 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:11 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:11 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:544: 9 elements reached seafloor, interacting with bottom
40:11 DEBUG   opendrift:735: Lifting 9 elements to seafloor.
40:11 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:11 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:11 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:11 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:11 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(69), np.int64(0), np.int64(4), np.int64(427), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:11 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:11 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:11 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:11 DEBUG   opendrift:2101: ======================================================================
40:11 INFO    opendrift:2102: 2025-05-19 08:39:03.420424 - step 47 of 96 - 500 active elements (0 deactivated)
40:11 DEBUG   opendrift:2108: 0 elements scheduled.
40:11 DEBUG   opendrift:2110: ======================================================================
40:11 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.77761444228534
40:11 DEBUG   opendrift:2121:                10.49919707217135 <- longitude -> 10.76952112850484
40:11 DEBUG   opendrift:2121:                -24.684011459350586 <- z -> -0.05232391775821332
40:11 DEBUG   opendrift:2122: ---------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:11 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:11 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:11 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:11 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 08:00:00 (before)
                2025-05-19 09:00:00 (after)
40:11 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 08:00:00) in space  (linearNDFast)
40:11 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:11 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 09:00:00) in space  (linearNDFast)
40:11 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:11 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 08:00:00, weight 0.35) and
                      after (2025-05-19 09:00:00, weight 0.65) in time
40:11 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:11 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:11 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:11 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:11 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:11 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:11 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:11 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:11 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:11 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:11 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:11 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:11 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:11 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:11 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:11 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:11 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:11 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:11 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:11 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:11 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:11 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:11 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:11 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.222703 (min) 0.30736 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.213115 (min) 0.132265 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.211829 (min) -0.163302 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -1.15062 (min) 0.958103 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -4.19493 (min) -2.55857 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 52.1661 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.18372 (min) 12.7032 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8107 (min) 34.6987 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000144492 (min) 0.000254363 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:11 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:11 DEBUG   opendrift:699: No elements hit coastline.
40:11 DEBUG   opendrift:735: Lifting 5 elements to seafloor.
40:11 DEBUG   opendrift:1745: No elements to deactivate
40:11 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:11 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:11 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:11 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
40:11 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3 0]
40:11 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0 3]
40:11 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 407.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  34.   0.]
 [ 14.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:11 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:11 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:11 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:11 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:11 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.013086487502264786
40:11 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:11 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:11 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:11 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:11 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:11 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:11 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:11 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:11 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:11 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:11 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(69), np.int64(0), np.int64(4), np.int64(427), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:11 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:11 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:11 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:11 DEBUG   opendrift:2101: ======================================================================
40:11 INFO    opendrift:2102: 2025-05-19 09:09:03.420424 - step 48 of 96 - 500 active elements (0 deactivated)
40:11 DEBUG   opendrift:2108: 0 elements scheduled.
40:11 DEBUG   opendrift:2110: ======================================================================
40:11 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.77723775898189
40:11 DEBUG   opendrift:2121:                10.499197072171356 <- longitude -> 10.76952112850484
40:11 DEBUG   opendrift:2121:                -24.684011459350586 <- z -> -0.1934285005544013
40:11 DEBUG   opendrift:2122: ---------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:11 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:11 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:11 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:11 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:11 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 09:00:00 (before)
                2025-05-19 10:00:00 (after)
40:14 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:14 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:14 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:14 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:14 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:14 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:14 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 53x38x7) for time after (2025-05-19 10:00:00)
40:14 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 09:00:00) in space  (linearNDFast)
40:14 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:14 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 10:00:00) in space  (linearNDFast)
40:14 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:14 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 09:00:00, weight 0.85) and
                      after (2025-05-19 10:00:00, weight 0.15) in time
40:14 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:14 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:14 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:14 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:14 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:14 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:14 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:14 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:14 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:14 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:14 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:14 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:14 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:14 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:14 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:14 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:14 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:14 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:14 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:14 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:14 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:14 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.195378 (min) 0.235375 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.172565 (min) 0.255231 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.218523 (min) -0.162172 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -0.643719 (min) 1.45273 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -4.37263 (min) -2.31274 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 51.994 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.4161 (min) 12.7404 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.1689 (min) 34.4214 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000159578 (min) 0.000212245 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:14 DEBUG   opendrift:699: No elements hit coastline.
40:14 DEBUG   opendrift:735: Lifting 8 elements to seafloor.
40:14 DEBUG   opendrift:1745: No elements to deactivate
40:14 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:14 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:14 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:14 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 0
40:14 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:14 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.014491148046971825
40:14 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:14 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:14 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:14 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:14 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:14 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:14 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(69), np.int64(0), np.int64(4), np.int64(427), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:14 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:14 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:14 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:14 DEBUG   opendrift:2101: ======================================================================
40:14 INFO    opendrift:2102: 2025-05-19 09:39:03.420424 - step 49 of 96 - 500 active elements (0 deactivated)
40:14 DEBUG   opendrift:2108: 0 elements scheduled.
40:14 DEBUG   opendrift:2110: ======================================================================
40:14 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.777083274041274
40:14 DEBUG   opendrift:2121:                10.499197072171356 <- longitude -> 10.769521128504838
40:14 DEBUG   opendrift:2121:                -24.684011459350586 <- z -> -0.32730019788382947
40:14 DEBUG   opendrift:2122: ---------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:14 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:14 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:14 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 09:00:00 (before)
                2025-05-19 10:00:00 (after)
40:14 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 09:00:00) in space  (linearNDFast)
40:14 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:14 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 10:00:00) in space  (linearNDFast)
40:14 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:14 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 09:00:00, weight 0.35) and
                      after (2025-05-19 10:00:00, weight 0.65) in time
40:14 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:14 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:14 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:14 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:14 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:14 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:14 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:14 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:14 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:14 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:14 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:14 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:14 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:14 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:14 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:14 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:14 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:14 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:14 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:14 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:14 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:14 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.182316 (min) 0.280475 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.147401 (min) 0.232293 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.232623 (min) -0.168549 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -0.0444765 (min) 1.42239 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -4.78981 (min) -2.51662 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 52.2348 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.5566 (min) 12.7826 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.9222 (min) 34.2065 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000162882 (min) 0.000259198 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:14 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:14 DEBUG   opendrift:699: No elements hit coastline.
40:14 DEBUG   opendrift:735: Lifting 12 elements to seafloor.
40:14 DEBUG   opendrift:1745: No elements to deactivate
40:14 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:14 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:14 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:14 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
40:14 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0]
40:14 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3]
40:14 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 408.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  34.   0.]
 [ 14.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:14 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:14 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:14 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:14 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:14 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.018044457485305625
40:14 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:14 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:14 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:14 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:14 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:14 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:14 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:14 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:14 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:14 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:14 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(68), np.int64(0), np.int64(4), np.int64(428), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:14 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:14 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:14 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:14 DEBUG   opendrift:2101: ======================================================================
40:14 INFO    opendrift:2102: 2025-05-19 10:09:03.420424 - step 50 of 96 - 500 active elements (0 deactivated)
40:14 DEBUG   opendrift:2108: 0 elements scheduled.
40:14 DEBUG   opendrift:2110: ======================================================================
40:14 DEBUG   opendrift:2121:                57.548275711384285 <- latitude -> 57.77751663698746
40:14 DEBUG   opendrift:2121:                10.499197072171356 <- longitude -> 10.769521128504834
40:14 DEBUG   opendrift:2121:                -24.684011459350586 <- z -> -0.0016780843088400887
40:14 DEBUG   opendrift:2122: ---------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:14 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:14 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:14 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:14 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 10:00:00 (before)
                2025-05-19 11:00:00 (after)
40:17 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:17 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:17 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:17 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:17 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:17 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:17 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 53x38x7) for time after (2025-05-19 11:00:00)
40:17 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 10:00:00) in space  (linearNDFast)
40:17 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:17 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 11:00:00) in space  (linearNDFast)
40:17 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:17 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 10:00:00, weight 0.85) and
                      after (2025-05-19 11:00:00, weight 0.15) in time
40:17 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:17 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:17 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:17 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:17 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:17 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:17 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:17 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:17 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:17 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:17 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:17 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:17 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:17 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:17 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:17 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:17 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:17 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:17 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:17 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:17 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:17 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.17129 (min) 0.274116 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0805998 (min) 0.173314 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.250071 (min) -0.179491 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 0.0694202 (min) 1.46204 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -5.15227 (min) -2.65465 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 53.2995 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.47107 (min) 12.8677 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.6102 (min) 34.3622 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000159646 (min) 0.000212321 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:17 DEBUG   opendrift:699: No elements hit coastline.
40:17 DEBUG   opendrift:735: Lifting 14 elements to seafloor.
40:17 DEBUG   opendrift:1745: No elements to deactivate
40:17 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:17 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:17 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:17 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
40:17 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0]
40:17 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3]
40:17 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 409.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  34.   0.]
 [ 14.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:17 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:17 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:17 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:17 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:17 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.020731176371267084
40:17 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:17 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:17 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:17 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:17 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:17 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:17 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:17 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:17 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(67), np.int64(0), np.int64(4), np.int64(429), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:17 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:17 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:17 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:17 DEBUG   opendrift:2101: ======================================================================
40:17 INFO    opendrift:2102: 2025-05-19 10:39:03.420424 - step 51 of 96 - 500 active elements (0 deactivated)
40:17 DEBUG   opendrift:2108: 0 elements scheduled.
40:17 DEBUG   opendrift:2110: ======================================================================
40:17 DEBUG   opendrift:2121:                57.54827571138429 <- latitude -> 57.77769629063845
40:17 DEBUG   opendrift:2121:                10.499197072171354 <- longitude -> 10.76952112850483
40:17 DEBUG   opendrift:2121:                -24.684011459350586 <- z -> -0.2630750695597424
40:17 DEBUG   opendrift:2122: ---------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:17 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:17 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:17 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 10:00:00 (before)
                2025-05-19 11:00:00 (after)
40:17 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 10:00:00) in space  (linearNDFast)
40:17 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:17 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 11:00:00) in space  (linearNDFast)
40:17 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:17 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 10:00:00, weight 0.35) and
                      after (2025-05-19 11:00:00, weight 0.65) in time
40:17 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:17 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:17 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:17 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:17 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:17 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:17 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:17 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:17 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:17 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:17 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:17 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:17 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:17 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:17 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:17 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:17 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:17 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:17 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:17 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:17 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:17 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.217762 (min) 0.2593 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0469612 (min) 0.190941 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.274538 (min) -0.20099 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: -0.0112394 (min) 1.64861 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -4.90739 (min) -3.68178 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 54.006 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.45656 (min) 12.9375 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.6053 (min) 34.3662 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000145056 (min) 0.000190071 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:17 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:17 DEBUG   opendrift:699: No elements hit coastline.
40:17 DEBUG   opendrift:735: Lifting 18 elements to seafloor.
40:17 DEBUG   opendrift:1745: No elements to deactivate
40:17 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:17 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:17 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:17 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 3
40:17 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 2 0]
40:17 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 0 3]
40:17 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 411.   0.]
 [  0.   0.   0.   0.   0.]
 [ 14.   0.   0.  34.   0.]
 [ 14.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:17 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:17 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:17 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:17 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:17 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.01878972474251575
40:17 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:17 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:17 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:17 DEBUG   opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
40:17 DEBUG   opendrift:735: Lifting 2 elements to seafloor.
40:17 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:17 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:17 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:17 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:17 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:17 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(66), np.int64(0), np.int64(3), np.int64(431), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:17 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:17 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:17 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:17 DEBUG   opendrift:2101: ======================================================================
40:17 INFO    opendrift:2102: 2025-05-19 11:09:03.420424 - step 52 of 96 - 500 active elements (0 deactivated)
40:17 DEBUG   opendrift:2108: 0 elements scheduled.
40:17 DEBUG   opendrift:2110: ======================================================================
40:17 DEBUG   opendrift:2121:                57.54827571138429 <- latitude -> 57.77936161253278
40:17 DEBUG   opendrift:2121:                10.499197072171354 <- longitude -> 10.76952112850483
40:17 DEBUG   opendrift:2121:                -24.6818790435791 <- z -> -0.032976145135938606
40:17 DEBUG   opendrift:2122: ---------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:17 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:17 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:17 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:17 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 11:00:00 (before)
                2025-05-19 12:00:00 (after)
40:19 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:19 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:19 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:19 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:19 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:19 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:19 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 52x39x7) for time after (2025-05-19 12:00:00)
40:19 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 11:00:00) in space  (linearNDFast)
40:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:19 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 12:00:00) in space  (linearNDFast)
40:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:19 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 11:00:00, weight 0.85) and
                      after (2025-05-19 12:00:00, weight 0.15) in time
40:19 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:19 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:19 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:19 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:19 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:19 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:19 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:19 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:19 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:19 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:19 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:19 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:19 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:19 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:19 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:19 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:19 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:19 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.234559 (min) 0.290007 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0143803 (min) 0.231949 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.301386 (min) -0.225811 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 0.0398995 (min) 1.95197 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -4.67648 (min) -4.07279 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 56.8982 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.48423 (min) 12.9752 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.6047 (min) 34.3301 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000160354 (min) 0.000167903 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:19 DEBUG   opendrift:699: No elements hit coastline.
40:19 DEBUG   opendrift:735: Lifting 21 elements to seafloor.
40:19 DEBUG   opendrift:1745: No elements to deactivate
40:19 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:19 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:19 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:19 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 3
40:19 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0]
40:19 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3]
40:19 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 414.   0.]
 [  0.   0.   0.   0.   0.]
 [ 14.   0.   0.  34.   0.]
 [ 14.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:19 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:19 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:19 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:19 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:19 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.017734532728422174
40:19 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:19 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:19 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:19 DEBUG   opendrift.models.oceandrift:544: 3 elements reached seafloor, interacting with bottom
40:19 DEBUG   opendrift:735: Lifting 3 elements to seafloor.
40:19 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:19 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:19 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:19 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:19 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(63), np.int64(0), np.int64(3), np.int64(434), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:19 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:19 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:19 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:19 DEBUG   opendrift:2101: ======================================================================
40:19 INFO    opendrift:2102: 2025-05-19 11:39:03.420424 - step 53 of 96 - 500 active elements (0 deactivated)
40:19 DEBUG   opendrift:2108: 0 elements scheduled.
40:19 DEBUG   opendrift:2110: ======================================================================
40:19 DEBUG   opendrift:2121:                57.54827571138429 <- latitude -> 57.78087827856462
40:19 DEBUG   opendrift:2121:                10.499197072171354 <- longitude -> 10.769521128504833
40:19 DEBUG   opendrift:2121:                -24.657665252685547 <- z -> -0.6120779645108885
40:19 DEBUG   opendrift:2122: ---------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:19 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:19 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 11:00:00 (before)
                2025-05-19 12:00:00 (after)
40:19 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 11:00:00) in space  (linearNDFast)
40:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:19 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 12:00:00) in space  (linearNDFast)
40:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:19 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 11:00:00, weight 0.35) and
                      after (2025-05-19 12:00:00, weight 0.65) in time
40:19 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:19 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:19 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:19 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:19 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:19 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:19 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:19 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:19 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:19 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:19 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:19 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:19 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:19 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:19 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:19 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:19 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:19 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.237401 (min) 0.330705 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0120265 (min) 0.302063 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.333053 (min) -0.258311 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 0.874916 (min) 2.53965 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -4.53875 (min) -3.76205 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 59.6729 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.4941 (min) 13.0239 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.9654 (min) 34.314 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000788736 (min) 0.000132497 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:19 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:19 DEBUG   opendrift:699: No elements hit coastline.
40:19 DEBUG   opendrift:735: Lifting 26 elements to seafloor.
40:19 DEBUG   opendrift:1745: No elements to deactivate
40:19 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:19 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:19 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:19 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
40:19 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3 0]
40:19 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0 3]
40:19 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 415.   0.]
 [  0.   0.   0.   0.   0.]
 [ 14.   0.   0.  34.   0.]
 [ 15.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:19 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:19 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:19 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:19 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:19 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.01868769804635492
40:19 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:19 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:19 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:19 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:19 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:19 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:19 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:19 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:19 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:19 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(63), np.int64(0), np.int64(3), np.int64(434), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:19 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:19 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:19 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:19 DEBUG   opendrift:2101: ======================================================================
40:19 INFO    opendrift:2102: 2025-05-19 12:09:03.420424 - step 54 of 96 - 500 active elements (0 deactivated)
40:19 DEBUG   opendrift:2108: 0 elements scheduled.
40:19 DEBUG   opendrift:2110: ======================================================================
40:19 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.7819316674142
40:19 DEBUG   opendrift:2121:                10.499197072171354 <- longitude -> 10.76952112850483
40:19 DEBUG   opendrift:2121:                -24.625837326049805 <- z -> -0.06134585551417415
40:19 DEBUG   opendrift:2122: ---------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:19 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:19 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:19 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 12:00:00 (before)
                2025-05-19 13:00:00 (after)
40:21 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:21 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:21 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:21 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:21 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:21 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:21 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 53x40x7) for time after (2025-05-19 13:00:00)
40:21 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 12:00:00) in space  (linearNDFast)
40:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:21 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 13:00:00) in space  (linearNDFast)
40:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:21 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 12:00:00, weight 0.85) and
                      after (2025-05-19 13:00:00, weight 0.15) in time
40:21 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:21 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:21 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:21 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:21 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:21 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:21 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:21 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:21 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:21 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:21 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:21 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:21 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:21 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:21 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:21 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:21 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:21 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.227766 (min) 0.313088 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.00824361 (min) 0.296772 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.365077 (min) -0.29312 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 1.46786 (min) 3.08211 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -4.54529 (min) -3.58188 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 61.9273 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.52539 (min) 13.0988 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8396 (min) 34.2689 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000978973 (min) 0.00011543 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:21 DEBUG   opendrift:699: No elements hit coastline.
40:21 DEBUG   opendrift:735: Lifting 28 elements to seafloor.
40:21 DEBUG   opendrift:1745: No elements to deactivate
40:21 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:21 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:21 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:21 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 6
40:21 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 0 3 0]
40:21 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 3 0 3]
40:21 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 420.   0.]
 [  0.   0.   0.   0.   0.]
 [ 14.   0.   0.  34.   0.]
 [ 16.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:21 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:21 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:21 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:21 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:21 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.020623350898385802
40:21 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:21 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:21 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:21 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:544: 5 elements reached seafloor, interacting with bottom
40:21 DEBUG   opendrift:735: Lifting 5 elements to seafloor.
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:21 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:21 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:21 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:21 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:21 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(59), np.int64(0), np.int64(3), np.int64(438), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:21 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:21 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:21 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:21 DEBUG   opendrift:2101: ======================================================================
40:21 INFO    opendrift:2102: 2025-05-19 12:39:03.420424 - step 55 of 96 - 500 active elements (0 deactivated)
40:21 DEBUG   opendrift:2108: 0 elements scheduled.
40:21 DEBUG   opendrift:2110: ======================================================================
40:21 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.78290938024011
40:21 DEBUG   opendrift:2121:                10.499197072171354 <- longitude -> 10.769521128504833
40:21 DEBUG   opendrift:2121:                -24.59239387512207 <- z -> -0.4267793330879769
40:21 DEBUG   opendrift:2122: ---------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:21 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:21 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 12:00:00 (before)
                2025-05-19 13:00:00 (after)
40:21 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 12:00:00) in space  (linearNDFast)
40:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:21 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 13:00:00) in space  (linearNDFast)
40:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:21 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 12:00:00, weight 0.35) and
                      after (2025-05-19 13:00:00, weight 0.65) in time
40:21 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:21 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:21 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:21 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:21 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:21 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:21 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:21 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:21 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:21 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:21 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:21 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:21 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:21 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:21 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:21 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:21 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:21 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.197979 (min) 0.312376 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.00784735 (min) 0.335775 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.39951 (min) -0.333271 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 1.97554 (min) 3.47087 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -4.58403 (min) -3.36703 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 64.0713 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.56657 (min) 13.189 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.3046 (min) 34.2121 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000344939 (min) 0.000125421 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:21 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:21 DEBUG   opendrift:699: No elements hit coastline.
40:21 DEBUG   opendrift:735: Lifting 34 elements to seafloor.
40:21 DEBUG   opendrift:1745: No elements to deactivate
40:21 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:21 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:21 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:21 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
40:21 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0]
40:21 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3]
40:21 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 421.   0.]
 [  0.   0.   0.   0.   0.]
 [ 14.   0.   0.  34.   0.]
 [ 16.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:21 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:21 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:21 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:21 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:21 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.02329500532147594
40:21 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:21 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:21 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:21 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:21 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:21 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:21 DEBUG   opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
40:21 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:21 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:21 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:21 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:21 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(58), np.int64(0), np.int64(3), np.int64(439), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:21 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:21 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:21 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:21 DEBUG   opendrift:2101: ======================================================================
40:21 INFO    opendrift:2102: 2025-05-19 13:09:03.420424 - step 56 of 96 - 500 active elements (0 deactivated)
40:21 DEBUG   opendrift:2108: 0 elements scheduled.
40:21 DEBUG   opendrift:2110: ======================================================================
40:21 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.78356457815355
40:21 DEBUG   opendrift:2121:                10.499197072171354 <- longitude -> 10.76952112850483
40:21 DEBUG   opendrift:2121:                -24.555225372314453 <- z -> -0.3276592381032778
40:21 DEBUG   opendrift:2122: ---------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:21 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:21 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:21 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 13:00:00 (before)
                2025-05-19 14:00:00 (after)
40:23 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:23 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:23 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:23 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:23 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:23 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:23 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 52x41x7) for time after (2025-05-19 14:00:00)
40:23 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 13:00:00) in space  (linearNDFast)
40:23 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:23 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 14:00:00) in space  (linearNDFast)
40:23 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:23 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 13:00:00, weight 0.85) and
                      after (2025-05-19 14:00:00, weight 0.15) in time
40:23 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:23 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:24 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:24 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:24 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:24 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:24 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:24 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:24 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:24 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:24 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:24 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:24 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:24 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:24 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:24 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:24 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:24 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:24 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:24 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:24 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:24 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:24 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:24 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:24 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:24 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.184814 (min) 0.313365 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.00953714 (min) 0.405558 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.431237 (min) -0.370092 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 2.33881 (min) 3.8127 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -4.52024 (min) -2.8196 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 65.7044 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.42272 (min) 13.2797 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.3726 (min) 34.391 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000350756 (min) 0.000202818 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:24 DEBUG   opendrift:699: No elements hit coastline.
40:24 DEBUG   opendrift:735: Lifting 38 elements to seafloor.
40:24 DEBUG   opendrift:1745: No elements to deactivate
40:24 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:24 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:24 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:24 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 7
40:24 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 3 0 3 0]
40:24 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 0 3 0 3]
40:24 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 426.   0.]
 [  0.   0.   0.   0.   0.]
 [ 14.   0.   0.  34.   0.]
 [ 18.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:24 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:24 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:24 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:24 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:24 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.024601507669012358
40:24 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:24 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:24 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:544: 5 elements reached seafloor, interacting with bottom
40:24 DEBUG   opendrift:735: Lifting 5 elements to seafloor.
40:24 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:24 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:24 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:24 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:24 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:24 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:24 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:24 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(55), np.int64(0), np.int64(2), np.int64(443), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:24 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:24 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:24 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:24 DEBUG   opendrift:2101: ======================================================================
40:24 INFO    opendrift:2102: 2025-05-19 13:39:03.420424 - step 57 of 96 - 500 active elements (0 deactivated)
40:24 DEBUG   opendrift:2108: 0 elements scheduled.
40:24 DEBUG   opendrift:2110: ======================================================================
40:24 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.784085270708424
40:24 DEBUG   opendrift:2121:                10.499197072171354 <- longitude -> 10.769521128504833
40:24 DEBUG   opendrift:2121:                -24.521575927734375 <- z -> -0.4501245227605948
40:24 DEBUG   opendrift:2122: ---------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:24 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:24 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:24 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:24 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 13:00:00 (before)
                2025-05-19 14:00:00 (after)
40:24 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 13:00:00) in space  (linearNDFast)
40:24 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 14:00:00) in space  (linearNDFast)
40:24 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:24 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 13:00:00, weight 0.35) and
                      after (2025-05-19 14:00:00, weight 0.65) in time
40:24 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:24 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048990456011 degrees.
40:24 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048990456011 degrees.
40:24 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:24 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:24 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:24 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:24 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:24 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:24 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:24 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:24 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:24 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:24 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:24 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:24 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:24 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:24 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:24 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:24 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:24 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:24 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:24 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:24 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:24 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:24 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.276 (min) 0.413256 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.00808647 (min) 0.42481 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.45499 (min) -0.399216 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 2.42407 (min) 4.17105 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -4.07645 (min) -2.1048 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 67.144 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.39079 (min) 13.367 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.5557 (min) 34.4063 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000540852 (min) 0.000362968 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:24 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:24 DEBUG   opendrift:699: No elements hit coastline.
40:24 DEBUG   opendrift:735: Lifting 44 elements to seafloor.
40:24 DEBUG   opendrift:1745: No elements to deactivate
40:24 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:24 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:24 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:24 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 0
40:24 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:24 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.02234235898082046
40:24 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:24 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:24 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:24 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:24 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:24 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:24 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:24 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:24 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:24 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(55), np.int64(0), np.int64(2), np.int64(443), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:24 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:24 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:24 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:24 DEBUG   opendrift:2101: ======================================================================
40:24 INFO    opendrift:2102: 2025-05-19 14:09:03.420424 - step 58 of 96 - 500 active elements (0 deactivated)
40:24 DEBUG   opendrift:2108: 0 elements scheduled.
40:24 DEBUG   opendrift:2110: ======================================================================
40:24 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.7849585671611
40:24 DEBUG   opendrift:2121:                10.499197072171354 <- longitude -> 10.76952112850483
40:24 DEBUG   opendrift:2121:                -24.496078491210938 <- z -> -0.2268884459656141
40:24 DEBUG   opendrift:2122: ---------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:24 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:24 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:24 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:24 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:24 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 14:00:00 (before)
                2025-05-19 15:00:00 (after)
40:26 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:26 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:26 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:26 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:26 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:26 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:26 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 52x42x7) for time after (2025-05-19 15:00:00)
40:26 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 14:00:00) in space  (linearNDFast)
40:26 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:26 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 15:00:00) in space  (linearNDFast)
40:26 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:26 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:26 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:26 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:26 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:26 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:26 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:26 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
40:26 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
40:26 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
40:26 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
40:26 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
40:26 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
40:26 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
40:26 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
40:26 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 14:00:00, weight 0.85) and
                      after (2025-05-19 15:00:00, weight 0.15) in time
40:26 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:26 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:26 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:26 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:26 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:26 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:26 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:26 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:26 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:26 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:26 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:26 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:26 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:26 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:26 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:26 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:26 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:26 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:26 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:26 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:26 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:26 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:26 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:26 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:26 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:26 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.36587 (min) 0.399258 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.00462794 (min) 0.421668 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.473368 (min) -0.421208 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 2.47997 (min) 4.46874 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -3.55417 (min) -1.35744 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 69.3258 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.68403 (min) 13.442 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.5595 (min) 34.0365 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000788335 (min) 0.00026443 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:26 DEBUG   opendrift:699: No elements hit coastline.
40:26 DEBUG   opendrift:735: Lifting 45 elements to seafloor.
40:26 DEBUG   opendrift:1745: No elements to deactivate
40:26 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:26 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:26 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:26 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
40:26 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0]
40:26 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3]
40:26 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 428.   0.]
 [  0.   0.   0.   0.   0.]
 [ 14.   0.   0.  35.   0.]
 [ 18.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:26 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:26 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:26 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:26 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:26 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.020439505845758404
40:26 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:26 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:26 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:26 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
40:26 DEBUG   opendrift:735: Lifting 2 elements to seafloor.
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:26 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:26 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:26 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:26 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:26 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(53), np.int64(0), np.int64(2), np.int64(445), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:26 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:26 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:26 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:26 DEBUG   opendrift:2101: ======================================================================
40:26 INFO    opendrift:2102: 2025-05-19 14:39:03.420424 - step 59 of 96 - 500 active elements (0 deactivated)
40:26 DEBUG   opendrift:2108: 0 elements scheduled.
40:26 DEBUG   opendrift:2110: ======================================================================
40:26 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.78584953780787
40:26 DEBUG   opendrift:2121:                10.499197072171354 <- longitude -> 10.769521128504834
40:26 DEBUG   opendrift:2121:                -24.477670669555664 <- z -> -0.28001223651532303
40:26 DEBUG   opendrift:2122: ---------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:26 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:26 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:26 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:26 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 14:00:00 (before)
                2025-05-19 15:00:00 (after)
40:26 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 14:00:00) in space  (linearNDFast)
40:26 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:26 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 15:00:00) in space  (linearNDFast)
40:26 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:26 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 14:00:00, weight 0.35) and
                      after (2025-05-19 15:00:00, weight 0.65) in time
40:26 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:26 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:26 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:26 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:26 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:26 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:26 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:26 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:26 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:26 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:26 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:26 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:26 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:26 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:26 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:26 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:26 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:26 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:26 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:26 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:26 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:26 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:26 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:26 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:26 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:26 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.341977 (min) 0.362588 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: 0.00347348 (min) 0.478728 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.47679 (min) -0.426708 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 2.47708 (min) 4.62471 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -3.03894 (min) -0.573246 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 71.3745 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.36907 (min) 13.4888 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.3644 (min) 34.4541 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000611092 (min) 0.000351224 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:26 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:26 DEBUG   opendrift:699: No elements hit coastline.
40:26 DEBUG   opendrift:735: Lifting 42 elements to seafloor.
40:26 DEBUG   opendrift:1745: No elements to deactivate
40:26 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:26 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:26 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:26 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 6
40:26 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0 2 0 3]
40:26 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3 0 3 0]
40:26 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 432.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  35.   0.]
 [ 19.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:26 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:26 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:26 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:26 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:26 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.018184599002455157
40:26 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:26 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:26 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:544: 4 elements reached seafloor, interacting with bottom
40:26 DEBUG   opendrift:735: Lifting 4 elements to seafloor.
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:26 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:26 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:26 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:26 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:26 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(51), np.int64(0), np.int64(1), np.int64(448), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:26 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:26 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:26 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:26 DEBUG   opendrift:2101: ======================================================================
40:26 INFO    opendrift:2102: 2025-05-19 15:09:03.420424 - step 60 of 96 - 500 active elements (0 deactivated)
40:26 DEBUG   opendrift:2108: 0 elements scheduled.
40:26 DEBUG   opendrift:2110: ======================================================================
40:26 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.78695331919914
40:26 DEBUG   opendrift:2121:                10.499197072171354 <- longitude -> 10.769521128504834
40:26 DEBUG   opendrift:2121:                -24.47567367553711 <- z -> -0.3484668229878102
40:26 DEBUG   opendrift:2122: ---------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:26 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:26 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:26 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:26 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:26 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 15:00:00 (before)
                2025-05-19 16:00:00 (after)
40:29 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:29 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:29 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:29 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:29 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:29 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:29 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 52x43x7) for time after (2025-05-19 16:00:00)
40:29 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 15:00:00) in space  (linearNDFast)
40:29 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:29 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 16:00:00) in space  (linearNDFast)
40:29 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:29 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
40:29 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
40:29 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
40:29 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
40:29 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
40:29 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
40:29 DEBUG   opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
40:29 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 15:00:00, weight 0.85) and
                      after (2025-05-19 16:00:00, weight 0.15) in time
40:29 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:29 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:29 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:29 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:29 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:29 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:29 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:29 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:29 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:29 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:29 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:29 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:29 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:29 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:29 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:29 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:29 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:29 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.279748 (min) 0.364754 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: 0.0110694 (min) 0.38259 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.468372 (min) -0.424895 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 2.60418 (min) 4.95569 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -2.7081 (min) -0.0676442 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 74.1916 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.40464 (min) 13.5298 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 24.8817 (min) 34.4149 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.00065199 (min) 0.000433447 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:29 DEBUG   opendrift:699: No elements hit coastline.
40:29 DEBUG   opendrift:730: No elements hit seafloor.
40:29 DEBUG   opendrift:1745: No elements to deactivate
40:29 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:29 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:29 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:29 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
40:29 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0]
40:29 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3]
40:29 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 433.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  35.   0.]
 [ 19.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:29 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:29 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:29 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:29 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:29 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.017753996141548396
40:29 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:29 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:29 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:29 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:29 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:29 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:29 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:29 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:29 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:29 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(50), np.int64(0), np.int64(1), np.int64(449), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:29 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:29 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:29 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:29 DEBUG   opendrift:2101: ======================================================================
40:29 INFO    opendrift:2102: 2025-05-19 15:39:03.420424 - step 61 of 96 - 500 active elements (0 deactivated)
40:29 DEBUG   opendrift:2108: 0 elements scheduled.
40:29 DEBUG   opendrift:2110: ======================================================================
40:29 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.78775905700935
40:29 DEBUG   opendrift:2121:                10.499197072171354 <- longitude -> 10.769521128504834
40:29 DEBUG   opendrift:2121:                -24.47567367553711 <- z -> -0.5953819229853031
40:29 DEBUG   opendrift:2122: ---------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:29 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:29 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 15:00:00 (before)
                2025-05-19 16:00:00 (after)
40:29 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 15:00:00) in space  (linearNDFast)
40:29 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:29 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 16:00:00) in space  (linearNDFast)
40:29 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:29 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 15:00:00, weight 0.35) and
                      after (2025-05-19 16:00:00, weight 0.65) in time
40:29 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:29 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:29 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:29 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:29 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:29 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:29 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:29 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:29 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:29 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:29 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:29 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:29 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:29 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:29 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:29 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:29 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:29 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.36319 (min) 0.282514 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: 0.0133163 (min) 0.442473 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.438148 (min) -0.405968 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 2.97644 (min) 5.74504 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -2.34518 (min) -0.0222982 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 75.92 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.51494 (min) 13.5593 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 24.8936 (min) 34.2493 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000421641 (min) 0.000649995 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:29 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:29 DEBUG   opendrift:699: No elements hit coastline.
40:29 DEBUG   opendrift:730: No elements hit seafloor.
40:29 DEBUG   opendrift:1745: No elements to deactivate
40:29 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:29 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:29 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:29 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
40:29 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3]
40:29 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0]
40:29 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 433.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  35.   0.]
 [ 20.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:29 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:29 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:29 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:29 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:29 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.02388689361050864
40:29 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:29 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:29 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:29 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:29 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:29 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:29 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:29 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:29 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(51), np.int64(0), np.int64(1), np.int64(448), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:29 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:29 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:29 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:29 DEBUG   opendrift:2101: ======================================================================
40:29 INFO    opendrift:2102: 2025-05-19 16:09:03.420424 - step 62 of 96 - 500 active elements (0 deactivated)
40:29 DEBUG   opendrift:2108: 0 elements scheduled.
40:29 DEBUG   opendrift:2110: ======================================================================
40:29 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.78852729416541
40:29 DEBUG   opendrift:2121:                10.499197072171354 <- longitude -> 10.769521128504834
40:29 DEBUG   opendrift:2121:                -28.51165480872495 <- z -> -0.23208373349463368
40:29 DEBUG   opendrift:2122: ---------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:29 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:29 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:29 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 16:00:00 (before)
                2025-05-19 17:00:00 (after)
40:31 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:31 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:31 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:31 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:31 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:31 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:31 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 53x44x7) for time after (2025-05-19 17:00:00)
40:31 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 16:00:00) in space  (linearNDFast)
40:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:31 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 17:00:00) in space  (linearNDFast)
40:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:31 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 16:00:00, weight 0.85) and
                      after (2025-05-19 17:00:00, weight 0.15) in time
40:31 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23048989927688 degrees.
40:31 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:31 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:31 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:31 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:31 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:31 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:31 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:31 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:31 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:31 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:31 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:31 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:31 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:31 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:31 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:31 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:31 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.348682 (min) 0.319131 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.00570961 (min) 0.411107 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.41149 (min) -0.381665 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 3.73564 (min) 6.49336 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -2.18717 (min) -0.211283 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 77.5759 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.32879 (min) 13.5955 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 24.9013 (min) 34.5265 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000258231 (min) 0.000573499 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:31 DEBUG   opendrift:699: No elements hit coastline.
40:31 DEBUG   opendrift:730: No elements hit seafloor.
40:31 DEBUG   opendrift:1745: No elements to deactivate
40:31 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:31 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:31 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:31 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 0
40:31 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:31 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.03059218418125635
40:31 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:31 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:31 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:31 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:31 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:31 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:31 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:31 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(51), np.int64(0), np.int64(1), np.int64(448), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:31 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:31 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:31 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:31 DEBUG   opendrift:2101: ======================================================================
40:31 INFO    opendrift:2102: 2025-05-19 16:39:03.420424 - step 63 of 96 - 500 active elements (0 deactivated)
40:31 DEBUG   opendrift:2108: 0 elements scheduled.
40:31 DEBUG   opendrift:2110: ======================================================================
40:31 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.790929774290944
40:31 DEBUG   opendrift:2121:                10.499197072171354 <- longitude -> 10.769930216413432
40:31 DEBUG   opendrift:2121:                -27.195031970162553 <- z -> -0.4829722418866139
40:31 DEBUG   opendrift:2122: ---------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:31 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:31 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:31 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 16:00:00 (before)
                2025-05-19 17:00:00 (after)
40:31 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 16:00:00) in space  (linearNDFast)
40:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:31 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 17:00:00) in space  (linearNDFast)
40:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:31 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 16:00:00, weight 0.35) and
                      after (2025-05-19 17:00:00, weight 0.65) in time
40:31 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23008079500643 degrees.
40:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.23008079500643 degrees.
40:31 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:31 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:31 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:31 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:31 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:31 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:31 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:31 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:31 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:31 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:31 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:31 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:31 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:31 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:31 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:31 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:31 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:31 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.267886 (min) 0.327513 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0187864 (min) 0.437731 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.376046 (min) -0.347496 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 5.49617 (min) 6.90809 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -2.82433 (min) -0.644874 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 81.2303 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.31158 (min) 13.6476 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 24.9161 (min) 34.5461 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000258666 (min) 0.00070002 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:31 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:31 DEBUG   opendrift:699: No elements hit coastline.
40:31 DEBUG   opendrift:730: No elements hit seafloor.
40:31 DEBUG   opendrift:1745: No elements to deactivate
40:31 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:31 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:31 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:31 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 0
40:31 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:31 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.034812140232366916
40:31 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:31 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:31 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:31 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:31 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:31 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:31 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:31 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:31 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:31 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(51), np.int64(0), np.int64(1), np.int64(448), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:31 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:31 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:31 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:31 DEBUG   opendrift:2101: ======================================================================
40:31 INFO    opendrift:2102: 2025-05-19 17:09:03.420424 - step 64 of 96 - 500 active elements (0 deactivated)
40:31 DEBUG   opendrift:2108: 0 elements scheduled.
40:31 DEBUG   opendrift:2110: ======================================================================
40:31 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.79161003221264
40:31 DEBUG   opendrift:2121:                10.499197072171354 <- longitude -> 10.77285405281071
40:32 DEBUG   opendrift:2121:                -27.96643710968753 <- z -> 0.0
40:32 DEBUG   opendrift:2122: ---------------------------------
40:32 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:32 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:32 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:32 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:32 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:32 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:32 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:32 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 17:00:00 (before)
                2025-05-19 18:00:00 (after)
40:34 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:34 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:34 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:34 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:34 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:34 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:34 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 54x45x7) for time after (2025-05-19 18:00:00)
40:34 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 17:00:00) in space  (linearNDFast)
40:34 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:34 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 18:00:00) in space  (linearNDFast)
40:34 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:34 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 17:00:00, weight 0.85) and
                      after (2025-05-19 18:00:00, weight 0.15) in time
40:34 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:34 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.227156972648146 degrees.
40:34 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.227156972648146 degrees.
40:34 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:34 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:34 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:34 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:34 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:34 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:34 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:34 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:34 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:34 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:34 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:34 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:34 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:34 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:34 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:34 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:34 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:34 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:34 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:34 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:34 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:34 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:34 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.302218 (min) 0.293069 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0416543 (min) 0.476396 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.342436 (min) -0.312398 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 6.67406 (min) 7.3449 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -3.14912 (min) -0.709025 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 82.4066 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.22902 (min) 13.687 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.7579 (min) 34.6852 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000122248 (min) 0.000730839 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:34 DEBUG   opendrift:699: No elements hit coastline.
40:34 DEBUG   opendrift:730: No elements hit seafloor.
40:34 DEBUG   opendrift:1745: No elements to deactivate
40:34 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:34 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:34 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:34 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 0
40:34 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:34 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.041468405102701555
40:34 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:34 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:34 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:34 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:34 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:34 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:34 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(51), np.int64(0), np.int64(1), np.int64(448), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:34 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:34 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:34 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:34 DEBUG   opendrift:2101: ======================================================================
40:34 INFO    opendrift:2102: 2025-05-19 17:39:03.420424 - step 65 of 96 - 500 active elements (0 deactivated)
40:34 DEBUG   opendrift:2108: 0 elements scheduled.
40:34 DEBUG   opendrift:2110: ======================================================================
40:34 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.79523415250796
40:34 DEBUG   opendrift:2121:                10.499197072171354 <- longitude -> 10.777127351527795
40:34 DEBUG   opendrift:2121:                -34.285191577845175 <- z -> -0.6022725041936072
40:34 DEBUG   opendrift:2122: ---------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:34 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:34 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:34 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:34 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 17:00:00 (before)
                2025-05-19 18:00:00 (after)
40:34 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 17:00:00) in space  (linearNDFast)
40:34 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:34 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 18:00:00) in space  (linearNDFast)
40:34 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:34 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 17:00:00, weight 0.35) and
                      after (2025-05-19 18:00:00, weight 0.65) in time
40:34 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:34 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.222883678113526 degrees.
40:34 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.222883678113526 degrees.
40:34 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:34 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:34 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:34 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:34 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:34 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:34 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:34 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:34 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:34 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:34 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:34 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:34 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:34 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:34 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:34 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:34 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:34 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:34 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:34 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:34 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:34 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:34 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.206155 (min) 0.287076 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0728785 (min) 0.463238 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.306947 (min) -0.275213 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 6.50465 (min) 7.69757 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -2.49315 (min) -0.528655 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 82.0089 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.02192 (min) 13.697 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.9552 (min) 34.938 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -4.04968e-05 (min) 0.000927611 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:34 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:34 DEBUG   opendrift:699: No elements hit coastline.
40:34 DEBUG   opendrift:730: No elements hit seafloor.
40:34 DEBUG   opendrift:1745: No elements to deactivate
40:34 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:34 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:34 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:34 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
40:34 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3]
40:34 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0]
40:34 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 433.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  35.   0.]
 [ 21.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:34 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:34 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:34 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:34 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:34 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04446307698493863
40:34 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:34 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:34 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:34 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:34 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:34 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:34 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:34 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:34 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:34 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(52), np.int64(0), np.int64(1), np.int64(447), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:34 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:34 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:34 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:34 DEBUG   opendrift:2101: ======================================================================
40:34 INFO    opendrift:2102: 2025-05-19 18:09:03.420424 - step 66 of 96 - 500 active elements (0 deactivated)
40:34 DEBUG   opendrift:2108: 0 elements scheduled.
40:34 DEBUG   opendrift:2110: ======================================================================
40:34 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.79992940051798
40:34 DEBUG   opendrift:2121:                10.499197072171356 <- longitude -> 10.780994442778441
40:34 DEBUG   opendrift:2121:                -30.52287693642587 <- z -> -0.16250406383832927
40:34 DEBUG   opendrift:2122: ---------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:34 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:34 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:34 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:34 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:34 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 18:00:00 (before)
                2025-05-19 19:00:00 (after)
40:36 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:36 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:36 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:36 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:36 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:36 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:36 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 54x45x7) for time after (2025-05-19 19:00:00)
40:36 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 18:00:00) in space  (linearNDFast)
40:36 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:36 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 19:00:00) in space  (linearNDFast)
40:36 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:36 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 18:00:00, weight 0.85) and
                      after (2025-05-19 19:00:00, weight 0.15) in time
40:36 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:36 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.21901657748836 degrees.
40:36 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50081402368052 and -59.21901657748836 degrees.
40:36 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:36 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:36 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:36 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:36 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:36 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:36 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:36 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:36 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:36 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:36 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:36 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:36 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:36 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:36 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:36 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:36 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:36 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:36 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:36 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:36 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:36 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:36 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:36 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:36 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:36 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:36 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:36 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:36 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:36 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.131373 (min) 0.279967 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0890538 (min) 0.411427 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.275253 (min) -0.239959 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 6.40046 (min) 7.92206 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -1.8233 (min) -0.0397335 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.11053 (min) 85.9945 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.04205 (min) 13.6934 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8642 (min) 34.9125 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: 4.39357e-06 (min) 0.000889252 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:36 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:36 DEBUG   opendrift:699: No elements hit coastline.
40:36 DEBUG   opendrift:730: No elements hit seafloor.
40:37 DEBUG   opendrift:1745: No elements to deactivate
40:37 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:37 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:37 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:37 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
40:37 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3]
40:37 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0]
40:37 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 433.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  35.   0.]
 [ 22.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:37 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:37 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:37 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:37 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:37 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04651931085340694
40:37 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:37 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:37 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:37 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:37 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:37 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:37 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:37 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:37 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:37 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(53), np.int64(0), np.int64(0), np.int64(447), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:37 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:37 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:37 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:37 DEBUG   opendrift:2101: ======================================================================
40:37 INFO    opendrift:2102: 2025-05-19 18:39:03.420424 - step 67 of 96 - 500 active elements (0 deactivated)
40:37 DEBUG   opendrift:2108: 0 elements scheduled.
40:37 DEBUG   opendrift:2110: ======================================================================
40:37 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.8027763803319
40:37 DEBUG   opendrift:2121:                10.500538835077487 <- longitude -> 10.780984294908805
40:37 DEBUG   opendrift:2121:                -26.34066244243041 <- z -> -0.7783032117465134
40:37 DEBUG   opendrift:2122: ---------------------------------
40:37 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:37 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:37 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:37 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:37 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:37 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:37 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:37 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 18:00:00 (before)
                2025-05-19 19:00:00 (after)
40:37 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 18:00:00) in space  (linearNDFast)
40:37 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:37 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 19:00:00) in space  (linearNDFast)
40:37 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:37 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 18:00:00, weight 0.35) and
                      after (2025-05-19 19:00:00, weight 0.65) in time
40:37 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:37 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49947225558898 and -59.21902672114726 degrees.
40:37 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49947225558898 and -59.21902672114726 degrees.
40:37 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:37 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:37 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:37 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:37 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:37 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:37 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:37 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:37 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:37 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:37 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:37 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:37 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:37 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:37 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:37 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:37 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:37 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:37 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:37 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:37 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:37 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:37 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:37 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:37 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:37 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:37 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:37 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:37 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:37 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.126643 (min) 0.264993 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0849584 (min) 0.454707 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.248727 (min) -0.21193 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 6.44708 (min) 7.81598 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -1.1219 (min) 0.561123 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.13081 (min) 88.2599 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.06789 (min) 13.65 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.4588 (min) 34.8785 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -3.08479e-05 (min) 0.000790909 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:37 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:37 DEBUG   opendrift:699: No elements hit coastline.
40:37 DEBUG   opendrift:730: No elements hit seafloor.
40:37 DEBUG   opendrift:1745: No elements to deactivate
40:37 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:37 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:37 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:37 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 3
40:37 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 3]
40:37 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 0]
40:37 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 435.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 23.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:37 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:37 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:37 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:37 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:37 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.044440880997577016
40:37 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:37 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:37 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:37 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
40:37 DEBUG   opendrift:735: Lifting 2 elements to seafloor.
40:37 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:37 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:37 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:37 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:37 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:37 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(52), np.int64(0), np.int64(0), np.int64(448), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:37 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:37 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:37 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:37 DEBUG   opendrift:2101: ======================================================================
40:37 INFO    opendrift:2102: 2025-05-19 19:09:03.420424 - step 68 of 96 - 500 active elements (0 deactivated)
40:37 DEBUG   opendrift:2108: 0 elements scheduled.
40:37 DEBUG   opendrift:2110: ======================================================================
40:37 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.80503866789115
40:37 DEBUG   opendrift:2121:                10.502222011988017 <- longitude -> 10.780984294908809
40:37 DEBUG   opendrift:2121:                -26.669214248657227 <- z -> -1.5128816791034088
40:37 DEBUG   opendrift:2122: ---------------------------------
40:37 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:37 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:37 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:37 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:37 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:37 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:37 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:37 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 19:00:00 (before)
                2025-05-19 20:00:00 (after)
40:39 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:39 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:39 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:39 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:39 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:39 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:39 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 55x45x7) for time after (2025-05-19 20:00:00)
40:39 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 19:00:00) in space  (linearNDFast)
40:39 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:39 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 20:00:00) in space  (linearNDFast)
40:39 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:39 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 19:00:00, weight 0.85) and
                      after (2025-05-19 20:00:00, weight 0.15) in time
40:39 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:39 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49778908335169 and -59.21902672114726 degrees.
40:39 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49778908335169 and -59.21902672114726 degrees.
40:39 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:39 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:39 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:39 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:39 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:39 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:39 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:39 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:39 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:39 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:39 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:39 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:39 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:39 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:39 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:39 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:39 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:39 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:39 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:39 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:39 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:39 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:39 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.130366 (min) 0.279222 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.129453 (min) 0.395658 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.226613 (min) -0.186758 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 6.30684 (min) 7.64993 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -0.585797 (min) 1.06765 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.17386 (min) 89.6655 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.07592 (min) 13.602 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.288 (min) 34.868 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000115488 (min) 0.000598537 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:39 DEBUG   opendrift:699: No elements hit coastline.
40:39 DEBUG   opendrift:730: No elements hit seafloor.
40:39 DEBUG   opendrift:1745: No elements to deactivate
40:39 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:39 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:39 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:39 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
40:39 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0]
40:39 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3]
40:39 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 436.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 23.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:39 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:39 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:39 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:39 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:39 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04240694903020037
40:39 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:39 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:39 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:39 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:39 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:39 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:39 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:39 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:39 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:39 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(51), np.int64(0), np.int64(0), np.int64(449), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:39 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:39 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:39 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:39 DEBUG   opendrift:2101: ======================================================================
40:39 INFO    opendrift:2102: 2025-05-19 19:39:03.420424 - step 69 of 96 - 500 active elements (0 deactivated)
40:39 DEBUG   opendrift:2108: 0 elements scheduled.
40:39 DEBUG   opendrift:2110: ======================================================================
40:39 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.80437938946757
40:39 DEBUG   opendrift:2121:                10.504175188028206 <- longitude -> 10.780984294908809
40:39 DEBUG   opendrift:2121:                -29.507317164079964 <- z -> 0.0
40:39 DEBUG   opendrift:2122: ---------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:39 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:39 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:39 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:39 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 19:00:00 (before)
                2025-05-19 20:00:00 (after)
40:39 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 19:00:00) in space  (linearNDFast)
40:39 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:39 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 20:00:00) in space  (linearNDFast)
40:39 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:39 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 19:00:00, weight 0.35) and
                      after (2025-05-19 20:00:00, weight 0.65) in time
40:39 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:39 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49583589521496 and -59.21902672114726 degrees.
40:39 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49583589521496 and -59.21902672114726 degrees.
40:39 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:39 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:39 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:39 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:39 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:39 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:39 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:39 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:39 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:39 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:39 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:39 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:39 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:39 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:39 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:39 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:39 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:39 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:39 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:39 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:39 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:39 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:39 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.12746 (min) 0.25127 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.145194 (min) 0.368297 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.212538 (min) -0.169063 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 5.81845 (min) 7.24237 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -0.135086 (min) 1.57499 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.24309 (min) 89.3105 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.14754 (min) 13.5541 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8022 (min) 34.7449 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -2.17943e-05 (min) 0.000615676 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:39 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:39 DEBUG   opendrift:699: No elements hit coastline.
40:39 DEBUG   opendrift:730: No elements hit seafloor.
40:39 DEBUG   opendrift:1745: No elements to deactivate
40:39 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:39 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:39 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:39 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
40:39 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3]
40:39 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0]
40:39 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 436.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 24.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:39 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:39 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:39 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:39 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:39 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.03847157258037138
40:39 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:39 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:39 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:39 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:39 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:39 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:39 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:39 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:39 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(52), np.int64(0), np.int64(0), np.int64(448), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:39 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:39 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:39 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:39 DEBUG   opendrift:2101: ======================================================================
40:39 INFO    opendrift:2102: 2025-05-19 20:09:03.420424 - step 70 of 96 - 500 active elements (0 deactivated)
40:39 DEBUG   opendrift:2108: 0 elements scheduled.
40:39 DEBUG   opendrift:2110: ======================================================================
40:39 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.80468885774412
40:39 DEBUG   opendrift:2121:                10.505937979246333 <- longitude -> 10.780984294908805
40:39 DEBUG   opendrift:2121:                -26.669214248657227 <- z -> -0.31680531938711576
40:39 DEBUG   opendrift:2122: ---------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:39 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:39 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:39 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:39 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:39 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 20:00:00 (before)
                2025-05-19 21:00:00 (after)
40:42 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:42 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:42 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:42 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:42 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:42 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:42 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 55x46x7) for time after (2025-05-19 21:00:00)
40:42 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 20:00:00) in space  (linearNDFast)
40:42 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:42 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 21:00:00) in space  (linearNDFast)
40:42 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:42 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 20:00:00, weight 0.85) and
                      after (2025-05-19 21:00:00, weight 0.15) in time
40:42 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:42 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672114726 degrees.
40:42 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672114726 degrees.
40:42 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:42 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:42 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:42 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:42 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:42 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:42 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:42 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:42 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:42 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:42 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:42 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:42 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:42 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:42 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:42 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:42 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:42 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:42 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:42 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:42 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.122027 (min) 0.278493 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.185266 (min) 0.365116 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.201904 (min) -0.15342 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 5.35377 (min) 6.87825 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 0.115165 (min) 1.94242 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.32429 (min) 89.413 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.0666 (min) 13.512 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.5955 (min) 34.8308 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: 4.99221e-06 (min) 0.000507622 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:42 DEBUG   opendrift:699: No elements hit coastline.
40:42 DEBUG   opendrift:730: No elements hit seafloor.
40:42 DEBUG   opendrift:1745: No elements to deactivate
40:42 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:42 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:42 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:42 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
40:42 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0]
40:42 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3]
40:42 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 438.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 24.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:42 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:42 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:42 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:42 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:42 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.035015551081392926
40:42 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:42 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:42 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
40:42 DEBUG   opendrift:735: Lifting 2 elements to seafloor.
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:42 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:42 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:42 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:42 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(50), np.int64(0), np.int64(0), np.int64(450), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:42 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:42 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:42 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:42 DEBUG   opendrift:2101: ======================================================================
40:42 INFO    opendrift:2102: 2025-05-19 20:39:03.420424 - step 71 of 96 - 500 active elements (0 deactivated)
40:42 DEBUG   opendrift:2108: 0 elements scheduled.
40:42 DEBUG   opendrift:2110: ======================================================================
40:42 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.80393594929466
40:42 DEBUG   opendrift:2121:                10.505937979246333 <- longitude -> 10.780984294908805
40:42 DEBUG   opendrift:2121:                -30.44046727853227 <- z -> -0.38815425714985197
40:42 DEBUG   opendrift:2122: ---------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:42 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:42 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:42 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:42 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 20:00:00 (before)
                2025-05-19 21:00:00 (after)
40:42 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 20:00:00) in space  (linearNDFast)
40:42 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:42 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 21:00:00) in space  (linearNDFast)
40:42 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:42 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 20:00:00, weight 0.35) and
                      after (2025-05-19 21:00:00, weight 0.65) in time
40:42 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:42 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672114726 degrees.
40:42 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672114726 degrees.
40:42 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:42 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:42 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:42 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:42 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:42 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:42 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:42 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:42 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:42 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:42 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:42 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:42 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:42 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:42 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:42 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:42 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:42 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:42 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:42 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:42 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.114349 (min) 0.302796 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.201223 (min) 0.385713 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.197898 (min) -0.142921 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 4.93588 (min) 6.3747 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 0.491254 (min) 2.22774 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.40815 (min) 89.0141 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.05327 (min) 13.4733 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.6065 (min) 34.8482 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -4.59899e-05 (min) 0.000420743 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:42 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:42 DEBUG   opendrift:699: No elements hit coastline.
40:42 DEBUG   opendrift:730: No elements hit seafloor.
40:42 DEBUG   opendrift:1745: No elements to deactivate
40:42 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:42 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:42 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:42 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 0
40:42 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:42 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.030236776538230124
40:42 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:42 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:42 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:42 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:42 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:42 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:42 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:42 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(50), np.int64(0), np.int64(0), np.int64(450), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:42 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:42 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:42 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:42 DEBUG   opendrift:2101: ======================================================================
40:42 INFO    opendrift:2102: 2025-05-19 21:09:03.420424 - step 72 of 96 - 500 active elements (0 deactivated)
40:42 DEBUG   opendrift:2108: 0 elements scheduled.
40:42 DEBUG   opendrift:2110: ======================================================================
40:42 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.8032577176965
40:42 DEBUG   opendrift:2121:                10.505937979246333 <- longitude -> 10.780984294908805
40:42 DEBUG   opendrift:2121:                -32.29587524293464 <- z -> -0.22381182783260511
40:42 DEBUG   opendrift:2122: ---------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:42 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:42 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:42 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:42 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:42 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 21:00:00 (before)
                2025-05-19 22:00:00 (after)
40:44 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:44 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:44 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:44 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:44 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:44 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:44 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 55x47x7) for time after (2025-05-19 22:00:00)
40:44 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 21:00:00) in space  (linearNDFast)
40:44 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:44 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 22:00:00) in space  (linearNDFast)
40:44 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:44 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 21:00:00, weight 0.85) and
                      after (2025-05-19 22:00:00, weight 0.15) in time
40:44 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:44 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672114726 degrees.
40:44 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672114726 degrees.
40:44 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:44 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:44 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:44 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:44 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:44 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:44 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:44 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:44 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:44 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:44 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:44 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:44 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:44 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:44 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:44 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:44 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:44 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:44 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:44 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:44 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.120725 (min) 0.364647 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.154203 (min) 0.295402 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.196725 (min) -0.135355 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 4.53974 (min) 5.89492 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 0.834067 (min) 2.6572 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 88.6802 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.05446 (min) 13.4367 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8873 (min) 34.8465 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000136569 (min) 0.000327626 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:44 DEBUG   opendrift:699: No elements hit coastline.
40:44 DEBUG   opendrift:730: No elements hit seafloor.
40:44 DEBUG   opendrift:1745: No elements to deactivate
40:44 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:44 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:44 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:44 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
40:44 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0]
40:44 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3]
40:44 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 439.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 24.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:44 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:44 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:44 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:44 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:44 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.026813420598829095
40:44 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:44 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:44 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:44 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:44 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:44 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:44 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:44 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:44 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:44 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(49), np.int64(0), np.int64(0), np.int64(451), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:44 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:44 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:44 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:44 DEBUG   opendrift:2101: ======================================================================
40:44 INFO    opendrift:2102: 2025-05-19 21:39:03.420424 - step 73 of 96 - 500 active elements (0 deactivated)
40:44 DEBUG   opendrift:2108: 0 elements scheduled.
40:44 DEBUG   opendrift:2110: ======================================================================
40:44 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.80266894794799
40:44 DEBUG   opendrift:2121:                10.505937979246333 <- longitude -> 10.780984294908809
40:44 DEBUG   opendrift:2121:                -28.235102853686097 <- z -> -0.10677228868552657
40:44 DEBUG   opendrift:2122: ---------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:44 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:44 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:44 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:44 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 21:00:00 (before)
                2025-05-19 22:00:00 (after)
40:44 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 21:00:00) in space  (linearNDFast)
40:44 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:44 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 22:00:00) in space  (linearNDFast)
40:44 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:44 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 21:00:00, weight 0.35) and
                      after (2025-05-19 22:00:00, weight 0.65) in time
40:44 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:44 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672114726 degrees.
40:44 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672114726 degrees.
40:44 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:44 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:44 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:44 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:44 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:44 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:44 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:44 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:44 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:44 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:44 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:44 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:44 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:44 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:44 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:44 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:44 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:44 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:44 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:44 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:44 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.16559 (min) 0.365828 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.162387 (min) 0.263043 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.203989 (min) -0.134897 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 4.2083 (min) 5.53903 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 1.12318 (min) 3.13325 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 88.4281 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.07295 (min) 13.4047 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8918 (min) 34.822 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000235939 (min) 0.000279117 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:44 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:44 DEBUG   opendrift:699: No elements hit coastline.
40:44 DEBUG   opendrift:735: Lifting 2 elements to seafloor.
40:44 DEBUG   opendrift:1745: No elements to deactivate
40:44 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:44 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:44 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:44 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 4
40:44 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3 0 3 3]
40:44 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0 3 0 0]
40:44 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 440.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 27.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:44 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:44 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:44 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:44 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:44 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.026197961209172917
40:44 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:44 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:44 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:44 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:44 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:44 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:44 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:44 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:44 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:44 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:44 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(51), np.int64(0), np.int64(0), np.int64(449), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:44 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:44 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:44 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:44 DEBUG   opendrift:2101: ======================================================================
40:44 INFO    opendrift:2102: 2025-05-19 22:09:03.420424 - step 74 of 96 - 500 active elements (0 deactivated)
40:44 DEBUG   opendrift:2108: 0 elements scheduled.
40:44 DEBUG   opendrift:2110: ======================================================================
40:44 DEBUG   opendrift:2121:                57.54827571138429 <- latitude -> 57.80192241844385
40:44 DEBUG   opendrift:2121:                10.505937979246337 <- longitude -> 10.78098429490881
40:44 DEBUG   opendrift:2121:                -27.77287764780526 <- z -> -0.14989648093033947
40:44 DEBUG   opendrift:2122: ---------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:44 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:44 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:44 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:44 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:44 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 22:00:00 (before)
                2025-05-19 23:00:00 (after)
40:46 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:46 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:46 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:46 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:46 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:46 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:46 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 56x47x7) for time after (2025-05-19 23:00:00)
40:46 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 22:00:00) in space  (linearNDFast)
40:46 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:46 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 23:00:00) in space  (linearNDFast)
40:46 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:46 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 22:00:00, weight 0.85) and
                      after (2025-05-19 23:00:00, weight 0.15) in time
40:46 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:46 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672864492 degrees.
40:46 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672864492 degrees.
40:46 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:46 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:46 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:46 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:46 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:46 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:46 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:46 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:46 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:46 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:46 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:46 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:46 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:46 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:46 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:46 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:46 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:46 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:46 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:46 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:46 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.1683 (min) 0.375838 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.053077 (min) 0.206073 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.216544 (min) -0.13968 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 3.82894 (min) 5.35542 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 1.15487 (min) 3.51446 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 88.1163 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.08072 (min) 13.3738 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.8974 (min) 34.8211 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000316635 (min) 0.000218576 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:46 DEBUG   opendrift:699: No elements hit coastline.
40:46 DEBUG   opendrift:735: Lifting 4 elements to seafloor.
40:46 DEBUG   opendrift:1745: No elements to deactivate
40:46 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:46 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:46 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:46 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
40:46 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 3]
40:46 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 0]
40:46 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 441.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 28.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:46 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:46 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:46 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:46 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:46 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.025870497138592553
40:46 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:46 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:46 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:46 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:46 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:46 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:46 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:46 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(51), np.int64(0), np.int64(0), np.int64(449), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:46 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:46 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:46 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:46 DEBUG   opendrift:2101: ======================================================================
40:46 INFO    opendrift:2102: 2025-05-19 22:39:03.420424 - step 75 of 96 - 500 active elements (0 deactivated)
40:46 DEBUG   opendrift:2108: 0 elements scheduled.
40:46 DEBUG   opendrift:2110: ======================================================================
40:46 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.8012015037257
40:46 DEBUG   opendrift:2121:                10.505937979246337 <- longitude -> 10.78098429490881
40:46 DEBUG   opendrift:2121:                -28.245352746451232 <- z -> -0.27308565340965285
40:46 DEBUG   opendrift:2122: ---------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:46 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:46 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:46 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:46 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 22:00:00 (before)
                2025-05-19 23:00:00 (after)
40:46 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 22:00:00) in space  (linearNDFast)
40:46 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:46 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-19 23:00:00) in space  (linearNDFast)
40:46 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:46 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 22:00:00, weight 0.35) and
                      after (2025-05-19 23:00:00, weight 0.65) in time
40:46 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:46 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672864492 degrees.
40:46 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672864492 degrees.
40:46 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:46 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:46 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:46 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:46 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:46 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:46 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:46 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:46 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:46 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:46 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:46 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:46 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:46 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:46 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:46 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:46 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:46 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:46 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:46 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:46 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.180849 (min) 0.414504 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.125343 (min) 0.237166 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.240479 (min) -0.15668 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 3.87103 (min) 5.30457 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 1.2924 (min) 3.5038 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 87.8233 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.03479 (min) 13.3451 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.9004 (min) 34.8767 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000542597 (min) 0.000144477 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:46 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:46 DEBUG   opendrift:699: No elements hit coastline.
40:46 DEBUG   opendrift:735: Lifting 6 elements to seafloor.
40:46 DEBUG   opendrift:1745: No elements to deactivate
40:46 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:46 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:46 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:46 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
40:46 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0]
40:46 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3]
40:46 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 443.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 28.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:46 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:46 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:46 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:46 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:46 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.025463894328915986
40:46 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:46 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:46 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:46 DEBUG   opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
40:46 DEBUG   opendrift:735: Lifting 2 elements to seafloor.
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:46 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:46 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:46 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:46 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:46 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:46 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(49), np.int64(0), np.int64(0), np.int64(451), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:46 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:46 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:46 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:46 DEBUG   opendrift:2101: ======================================================================
40:46 INFO    opendrift:2102: 2025-05-19 23:09:03.420424 - step 76 of 96 - 500 active elements (0 deactivated)
40:46 DEBUG   opendrift:2108: 0 elements scheduled.
40:46 DEBUG   opendrift:2110: ======================================================================
40:46 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.800162292461266
40:46 DEBUG   opendrift:2121:                10.505937979246333 <- longitude -> 10.780984294908814
40:46 DEBUG   opendrift:2121:                -27.45331175030297 <- z -> -2.3213538342492797
40:46 DEBUG   opendrift:2122: ---------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:46 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:46 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:46 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:46 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:46 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 23:00:00 (before)
                2025-05-20 00:00:00 (after)
40:49 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:49 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:49 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:49 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:49 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:49 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:49 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 55x47x7) for time after (2025-05-20 00:00:00)
40:49 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 23:00:00) in space  (linearNDFast)
40:49 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:49 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 00:00:00) in space  (linearNDFast)
40:49 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:49 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 23:00:00, weight 0.85) and
                      after (2025-05-20 00:00:00, weight 0.15) in time
40:49 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:49 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672864492 degrees.
40:49 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672864492 degrees.
40:49 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:49 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:49 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:49 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:49 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:49 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:49 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:49 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:49 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:49 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:49 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:49 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:49 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:49 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:49 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:49 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:49 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:49 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:49 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:49 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:49 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.209762 (min) 0.439634 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.248417 (min) 0.245264 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.267749 (min) -0.178964 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 3.68151 (min) 5.26068 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 1.47023 (min) 3.4897 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 87.4535 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.1071 (min) 13.3176 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.2876 (min) 34.7891 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000871079 (min) 0.000129136 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:49 DEBUG   opendrift:699: No elements hit coastline.
40:49 DEBUG   opendrift:735: Lifting 9 elements to seafloor.
40:49 DEBUG   opendrift:1745: No elements to deactivate
40:49 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:49 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:49 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:49 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
40:49 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3]
40:49 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0]
40:49 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 443.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 29.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:49 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:49 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:49 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:49 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:49 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.024783989964979734
40:49 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:49 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:49 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:49 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:49 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:49 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:49 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:49 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(50), np.int64(0), np.int64(0), np.int64(450), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:49 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:49 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:49 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:49 DEBUG   opendrift:2101: ======================================================================
40:49 INFO    opendrift:2102: 2025-05-19 23:39:03.420424 - step 77 of 96 - 500 active elements (0 deactivated)
40:49 DEBUG   opendrift:2108: 0 elements scheduled.
40:49 DEBUG   opendrift:2110: ======================================================================
40:49 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.79614736485718
40:49 DEBUG   opendrift:2121:                10.505937979246337 <- longitude -> 10.780984294908814
40:49 DEBUG   opendrift:2121:                -31.37665488931457 <- z -> -0.6361019682209347
40:49 DEBUG   opendrift:2122: ---------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:49 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:49 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:49 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:49 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-19 23:00:00 (before)
                2025-05-20 00:00:00 (after)
40:49 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-19 23:00:00) in space  (linearNDFast)
40:49 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:49 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 00:00:00) in space  (linearNDFast)
40:49 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:49 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-19 23:00:00, weight 0.35) and
                      after (2025-05-20 00:00:00, weight 0.65) in time
40:49 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:49 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672864492 degrees.
40:49 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672864492 degrees.
40:49 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:49 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:49 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:49 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:49 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:49 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:49 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:49 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:49 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:49 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:49 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:49 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:49 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:49 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:49 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:49 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:49 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:49 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:49 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:49 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:49 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.238648 (min) 0.43804 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.20385 (min) 0.303029 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.302564 (min) -0.213464 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 3.35087 (min) 4.73017 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 1.62361 (min) 3.46675 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 85.0576 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.11327 (min) 13.2926 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.5067 (min) 34.7701 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000820494 (min) 0.000104238 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:49 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:49 DEBUG   opendrift:699: No elements hit coastline.
40:49 DEBUG   opendrift:735: Lifting 11 elements to seafloor.
40:49 DEBUG   opendrift:1745: No elements to deactivate
40:49 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:49 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:49 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:49 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 3
40:49 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 0]
40:49 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 3]
40:49 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 446.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 29.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:49 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:49 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:49 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:49 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:49 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.022730820533767643
40:49 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:49 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:49 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:49 DEBUG   opendrift.models.oceandrift:544: 3 elements reached seafloor, interacting with bottom
40:49 DEBUG   opendrift:735: Lifting 3 elements to seafloor.
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:49 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:49 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:49 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:49 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:49 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:49 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(47), np.int64(0), np.int64(0), np.int64(453), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:49 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:49 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:49 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:49 DEBUG   opendrift:2101: ======================================================================
40:49 INFO    opendrift:2102: 2025-05-20 00:09:03.420424 - step 78 of 96 - 500 active elements (0 deactivated)
40:49 DEBUG   opendrift:2108: 0 elements scheduled.
40:49 DEBUG   opendrift:2110: ======================================================================
40:49 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.79578537340246
40:49 DEBUG   opendrift:2121:                10.505937979246335 <- longitude -> 10.780984294908814
40:49 DEBUG   opendrift:2121:                -34.95416541034448 <- z -> -1.340057189348621
40:49 DEBUG   opendrift:2122: ---------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:49 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:49 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:49 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:49 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:49 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 00:00:00 (before)
                2025-05-20 01:00:00 (after)
40:52 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:52 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:52 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:52 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:52 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:52 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:52 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 55x48x7) for time after (2025-05-20 01:00:00)
40:52 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 00:00:00) in space  (linearNDFast)
40:52 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:52 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 01:00:00) in space  (linearNDFast)
40:52 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:52 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 00:00:00, weight 0.85) and
                      after (2025-05-20 01:00:00, weight 0.15) in time
40:52 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:52 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672864492 degrees.
40:52 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672864492 degrees.
40:52 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:52 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:52 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:52 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:52 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:52 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:52 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:52 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:52 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:52 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:52 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:52 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:52 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:52 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:52 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:52 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:52 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:52 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:52 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.229305 (min) 0.394431 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.124588 (min) 0.32184 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.337213 (min) -0.250877 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 2.90397 (min) 4.39239 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 1.72773 (min) 3.4183 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 84.2103 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.1237 (min) 13.2661 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.9962 (min) 34.8132 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000971405 (min) 0.000103711 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:52 DEBUG   opendrift:699: No elements hit coastline.
40:52 DEBUG   opendrift:735: Lifting 14 elements to seafloor.
40:52 DEBUG   opendrift:1745: No elements to deactivate
40:52 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:52 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:52 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:52 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
40:52 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3 3]
40:52 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0 0]
40:52 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 446.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 31.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:52 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:52 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:52 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:52 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:52 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.020916866088026252
40:52 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:52 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:52 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:52 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:52 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:52 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:52 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:52 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(49), np.int64(0), np.int64(0), np.int64(451), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:52 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:52 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:52 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:52 DEBUG   opendrift:2101: ======================================================================
40:52 INFO    opendrift:2102: 2025-05-20 00:39:03.420424 - step 79 of 96 - 500 active elements (0 deactivated)
40:52 DEBUG   opendrift:2108: 0 elements scheduled.
40:52 DEBUG   opendrift:2110: ======================================================================
40:52 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.79473440367793
40:52 DEBUG   opendrift:2121:                10.505937979246335 <- longitude -> 10.780984294908814
40:52 DEBUG   opendrift:2121:                -38.116060608488574 <- z -> -0.6460795843218194
40:52 DEBUG   opendrift:2122: ---------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:52 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:52 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:52 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 00:00:00 (before)
                2025-05-20 01:00:00 (after)
40:52 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 00:00:00) in space  (linearNDFast)
40:52 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:52 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 01:00:00) in space  (linearNDFast)
40:52 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:52 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 00:00:00, weight 0.35) and
                      after (2025-05-20 01:00:00, weight 0.65) in time
40:52 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:52 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672864492 degrees.
40:52 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.49407311139636 and -59.21902672864492 degrees.
40:52 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:52 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:52 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:52 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:52 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:52 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:52 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:52 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:52 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:52 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:52 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:52 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:52 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:52 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:52 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:52 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:52 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:52 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:52 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.316852 (min) 0.306246 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.169541 (min) 0.322521 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.373769 (min) -0.295027 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 2.77542 (min) 4.43113 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 1.72593 (min) 3.26933 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 84.5537 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.12577 (min) 13.2361 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.999 (min) 34.763 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000685429 (min) 9.3142e-05 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:52 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:52 DEBUG   opendrift:699: No elements hit coastline.
40:52 DEBUG   opendrift:735: Lifting 14 elements to seafloor.
40:52 DEBUG   opendrift:1745: No elements to deactivate
40:52 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:52 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:52 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:52 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 3
40:52 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 3]
40:52 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 0]
40:52 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 448.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 32.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:52 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:52 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:52 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:52 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:52 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.01920853764003869
40:52 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:52 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:52 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
40:52 DEBUG   opendrift:735: Lifting 2 elements to seafloor.
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:52 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:52 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:52 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:52 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:52 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(48), np.int64(0), np.int64(0), np.int64(452), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:52 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:52 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:52 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:52 DEBUG   opendrift:2101: ======================================================================
40:52 INFO    opendrift:2102: 2025-05-20 01:09:03.420424 - step 80 of 96 - 500 active elements (0 deactivated)
40:52 DEBUG   opendrift:2108: 0 elements scheduled.
40:52 DEBUG   opendrift:2110: ======================================================================
40:52 DEBUG   opendrift:2121:                57.54827571138429 <- latitude -> 57.79566336831143
40:52 DEBUG   opendrift:2121:                10.503524349317042 <- longitude -> 10.780984294908817
40:52 DEBUG   opendrift:2121:                -39.48415130578276 <- z -> -0.7216753437878767
40:52 DEBUG   opendrift:2122: ---------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:52 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:52 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:52 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:52 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 01:00:00 (before)
                2025-05-20 02:00:00 (after)
40:54 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:54 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:54 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:54 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:54 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:54 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:54 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 55x48x7) for time after (2025-05-20 02:00:00)
40:54 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 01:00:00) in space  (linearNDFast)
40:54 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:54 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 02:00:00) in space  (linearNDFast)
40:54 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:54 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 01:00:00, weight 0.85) and
                      after (2025-05-20 02:00:00, weight 0.15) in time
40:54 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:54 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4964866913764 and -59.21902672864492 degrees.
40:54 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4964866913764 and -59.21902672864492 degrees.
40:54 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:54 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:54 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:54 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:54 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:54 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:54 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:54 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:54 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:54 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:54 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:54 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:54 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:54 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:54 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:54 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:54 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:54 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:54 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:54 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:54 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:54 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:54 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.398985 (min) 0.199625 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.271325 (min) 0.373696 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.40895 (min) -0.337743 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 2.63384 (min) 4.47669 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 1.63049 (min) 3.31614 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 85.1157 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.1185 (min) 13.2106 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.2136 (min) 34.768 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.00102633 (min) 0.000221895 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:54 DEBUG   opendrift:699: No elements hit coastline.
40:54 DEBUG   opendrift:735: Lifting 16 elements to seafloor.
40:54 DEBUG   opendrift:1745: No elements to deactivate
40:54 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:54 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:54 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:54 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
40:54 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3 0]
40:54 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0 3]
40:54 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 449.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 33.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:54 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:54 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:54 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:54 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:54 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.018763218066340952
40:54 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:54 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:54 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:54 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:54 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:54 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:54 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:54 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:54 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(48), np.int64(0), np.int64(0), np.int64(452), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:54 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:54 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:54 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:54 DEBUG   opendrift:2101: ======================================================================
40:54 INFO    opendrift:2102: 2025-05-20 01:39:03.420424 - step 81 of 96 - 500 active elements (0 deactivated)
40:54 DEBUG   opendrift:2108: 0 elements scheduled.
40:54 DEBUG   opendrift:2110: ======================================================================
40:54 DEBUG   opendrift:2121:                57.54827571138429 <- latitude -> 57.7964827377733
40:54 DEBUG   opendrift:2121:                10.498870774293536 <- longitude -> 10.780984294908817
40:54 DEBUG   opendrift:2121:                -38.57295002067197 <- z -> -0.460689250203833
40:54 DEBUG   opendrift:2122: ---------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:54 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:54 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:54 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:54 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 01:00:00 (before)
                2025-05-20 02:00:00 (after)
40:54 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 01:00:00) in space  (linearNDFast)
40:54 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:54 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 02:00:00) in space  (linearNDFast)
40:54 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:54 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 01:00:00, weight 0.35) and
                      after (2025-05-20 02:00:00, weight 0.65) in time
40:54 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:54 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50114025219585 and -59.21902672864492 degrees.
40:54 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50114025219585 and -59.21902672864492 degrees.
40:54 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:54 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:54 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:54 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:54 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:54 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:54 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:54 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:54 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:54 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:54 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:54 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:54 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:54 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:54 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:54 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:54 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:54 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:54 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:54 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:54 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:54 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:54 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.508606 (min) 0.238346 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.118246 (min) 0.422773 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.440259 (min) -0.377141 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 2.60853 (min) 4.53685 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 1.97888 (min) 3.7472 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 83.3997 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.13524 (min) 13.1956 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.0831 (min) 34.7446 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000894995 (min) 0.000246637 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:54 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:54 DEBUG   opendrift:699: No elements hit coastline.
40:54 DEBUG   opendrift:735: Lifting 17 elements to seafloor.
40:54 DEBUG   opendrift:1745: No elements to deactivate
40:54 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:54 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:54 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:54 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
40:54 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3 0]
40:54 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0 3]
40:54 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 450.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 34.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:54 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:54 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:54 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:54 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:54 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.021243128037770505
40:54 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:54 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:54 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:54 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:54 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:54 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:54 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:54 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:54 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:54 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(48), np.int64(0), np.int64(0), np.int64(452), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:54 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:54 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:54 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:54 DEBUG   opendrift:2101: ======================================================================
40:54 INFO    opendrift:2102: 2025-05-20 02:09:03.420424 - step 82 of 96 - 500 active elements (0 deactivated)
40:54 DEBUG   opendrift:2108: 0 elements scheduled.
40:54 DEBUG   opendrift:2110: ======================================================================
40:54 DEBUG   opendrift:2121:                57.54827571138429 <- latitude -> 57.79724631687276
40:54 DEBUG   opendrift:2121:                10.494436707077163 <- longitude -> 10.780984294908817
40:54 DEBUG   opendrift:2121:                -38.344391551159084 <- z -> -0.24657271754636023
40:54 DEBUG   opendrift:2122: ---------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:54 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:54 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:54 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:54 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:54 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 02:00:00 (before)
                2025-05-20 03:00:00 (after)
40:56 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:56 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:56 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:56 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:56 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:56 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:56 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 55x49x7) for time after (2025-05-20 03:00:00)
40:56 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 02:00:00) in space  (linearNDFast)
40:56 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:56 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 03:00:00) in space  (linearNDFast)
40:56 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:56 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 02:00:00, weight 0.85) and
                      after (2025-05-20 03:00:00, weight 0.15) in time
40:56 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:56 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50557432262096 and -59.21902672864492 degrees.
40:56 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.50557432262096 and -59.21902672864492 degrees.
40:56 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:56 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:56 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:56 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:56 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:56 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:56 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:56 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:56 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:56 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:56 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:56 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:56 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:56 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:56 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:56 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:56 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:56 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:56 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:56 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:56 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:56 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:56 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:56 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:56 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:56 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:56 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:56 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:56 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:56 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.610547 (min) 0.270087 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.160977 (min) 0.406322 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.464881 (min) -0.410985 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 2.59305 (min) 4.67575 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 2.09013 (min) 3.98512 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 84.1855 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.10351 (min) 13.1806 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.0161 (min) 34.7892 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.00116048 (min) 0.000380712 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:56 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:56 DEBUG   opendrift:699: No elements hit coastline.
40:56 DEBUG   opendrift:735: Lifting 20 elements to seafloor.
40:57 DEBUG   opendrift:1745: No elements to deactivate
40:57 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:57 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:57 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:57 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
40:57 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3]
40:57 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0]
40:57 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 450.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 35.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:57 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:57 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:57 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:57 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:57 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.024080867546186855
40:57 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:57 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:57 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:57 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:57 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:57 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:57 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(49), np.int64(0), np.int64(0), np.int64(451), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:57 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:57 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:57 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:57 DEBUG   opendrift:2101: ======================================================================
40:57 INFO    opendrift:2102: 2025-05-20 02:39:03.420424 - step 83 of 96 - 500 active elements (0 deactivated)
40:57 DEBUG   opendrift:2108: 0 elements scheduled.
40:57 DEBUG   opendrift:2110: ======================================================================
40:57 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.79790893785215
40:57 DEBUG   opendrift:2121:                10.488078540376849 <- longitude -> 10.780984294908817
40:57 DEBUG   opendrift:2121:                -39.34981421319092 <- z -> -0.12995767535000508
40:57 DEBUG   opendrift:2122: ---------------------------------
40:57 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:57 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:57 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:57 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:57 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:57 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:57 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 02:00:00 (before)
                2025-05-20 03:00:00 (after)
40:57 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 02:00:00) in space  (linearNDFast)
40:57 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:57 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 03:00:00) in space  (linearNDFast)
40:57 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:57 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 02:00:00, weight 0.35) and
                      after (2025-05-20 03:00:00, weight 0.65) in time
40:57 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:57 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.511932490777305 and -59.21902672864492 degrees.
40:57 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.511932490777305 and -59.21902672864492 degrees.
40:57 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:57 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:57 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:57 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:57 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:57 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:57 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:57 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:57 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:57 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:57 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:57 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:57 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:57 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:57 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:57 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:57 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:57 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:57 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:57 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:57 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:57 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:57 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:57 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:57 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:57 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.619722 (min) 0.2892 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0517096 (min) 0.385962 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.479206 (min) -0.429391 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 2.78632 (min) 5.02311 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 2.106 (min) 3.77651 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 84.2359 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.06572 (min) 13.1656 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.2262 (min) 34.8413 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.00140415 (min) 0.000628093 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:57 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:57 DEBUG   opendrift:699: No elements hit coastline.
40:57 DEBUG   opendrift:735: Lifting 66 elements to seafloor.
40:57 DEBUG   opendrift:1745: No elements to deactivate
40:57 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:57 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:57 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:57 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
40:57 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3 0]
40:57 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0 3]
40:57 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 451.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 36.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:57 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:57 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:57 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:57 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:57 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.02778642532362975
40:57 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:57 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:57 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
40:57 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:57 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:57 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:57 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:57 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:57 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:57 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(49), np.int64(0), np.int64(0), np.int64(451), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:57 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:57 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:57 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:57 DEBUG   opendrift:2101: ======================================================================
40:57 INFO    opendrift:2102: 2025-05-20 03:09:03.420424 - step 84 of 96 - 500 active elements (0 deactivated)
40:57 DEBUG   opendrift:2108: 0 elements scheduled.
40:57 DEBUG   opendrift:2110: ======================================================================
40:57 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.79834523495896
40:57 DEBUG   opendrift:2121:                10.48450756898188 <- longitude -> 10.780984294908817
40:57 DEBUG   opendrift:2121:                -38.16572253961403 <- z -> 0.0
40:57 DEBUG   opendrift:2122: ---------------------------------
40:57 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:57 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:57 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:57 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:57 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:57 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:57 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 03:00:00 (before)
                2025-05-20 04:00:00 (after)
40:59 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
40:59 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
40:59 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
40:59 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
40:59 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
40:59 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
40:59 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 56x49x7) for time after (2025-05-20 04:00:00)
40:59 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 03:00:00) in space  (linearNDFast)
40:59 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:59 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 04:00:00) in space  (linearNDFast)
40:59 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:59 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 03:00:00, weight 0.85) and
                      after (2025-05-20 04:00:00, weight 0.15) in time
40:59 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:59 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.5155034702866 and -59.21902672864492 degrees.
40:59 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.5155034702866 and -59.21902672864492 degrees.
40:59 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:59 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:59 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:59 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:59 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:59 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:59 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:59 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:59 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:59 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:59 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:59 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:59 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:59 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:59 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:59 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:59 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:59 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:59 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:59 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:59 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:59 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:59 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.638963 (min) 0.349044 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0545033 (min) 0.369983 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.484138 (min) -0.438908 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 3.06954 (min) 5.42025 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 1.95965 (min) 3.54848 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 84.9692 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.05553 (min) 13.1521 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.2605 (min) 34.8538 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.00137441 (min) 0.000719922 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:59 DEBUG   opendrift:699: No elements hit coastline.
40:59 DEBUG   opendrift:735: Lifting 70 elements to seafloor.
40:59 DEBUG   opendrift:1745: No elements to deactivate
40:59 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:59 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:59 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:59 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 3
40:59 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0 3]
40:59 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3 0]
40:59 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 453.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 37.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:59 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:59 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:59 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:59 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:59 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.02982665033180043
40:59 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:59 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:59 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
40:59 DEBUG   opendrift:735: Lifting 2 elements to seafloor.
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:59 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:59 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:59 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:59 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:59 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(48), np.int64(0), np.int64(0), np.int64(452), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:59 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:59 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:59 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:59 DEBUG   opendrift:2101: ======================================================================
40:59 INFO    opendrift:2102: 2025-05-20 03:39:03.420424 - step 85 of 96 - 500 active elements (0 deactivated)
40:59 DEBUG   opendrift:2108: 0 elements scheduled.
40:59 DEBUG   opendrift:2110: ======================================================================
40:59 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.798267003414686
40:59 DEBUG   opendrift:2121:                10.472190716514763 <- longitude -> 10.78098429490882
40:59 DEBUG   opendrift:2121:                -37.74466212699128 <- z -> -0.7980646760655933
40:59 DEBUG   opendrift:2122: ---------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:59 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:59 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:59 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:59 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 03:00:00 (before)
                2025-05-20 04:00:00 (after)
40:59 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 03:00:00) in space  (linearNDFast)
40:59 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:59 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 04:00:00) in space  (linearNDFast)
40:59 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
40:59 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 03:00:00, weight 0.35) and
                      after (2025-05-20 04:00:00, weight 0.65) in time
40:59 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
40:59 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.52782033298543 and -59.21902672114724 degrees.
40:59 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.52782033298543 and -59.21902672114724 degrees.
40:59 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:59 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
40:59 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
40:59 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:59 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
40:59 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:59 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:59 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:59 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
40:59 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
40:59 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:59 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
40:59 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
40:59 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
40:59 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
40:59 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
40:59 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
40:59 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
40:59 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
40:59 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
40:59 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
40:59 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
40:59 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.554186 (min) 0.345317 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0675469 (min) 0.3196 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.471379 (min) -0.426702 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 3.22422 (min) 5.90205 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 1.43817 (min) 3.28897 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 85.3121 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.04823 (min) 13.1421 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.9728 (min) 34.8605 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.00116462 (min) 0.000801324 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
40:59 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
40:59 DEBUG   opendrift:699: No elements hit coastline.
40:59 DEBUG   opendrift:730: No elements hit seafloor.
40:59 DEBUG   opendrift:1745: No elements to deactivate
40:59 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
40:59 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
40:59 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
40:59 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
40:59 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3 3]
40:59 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0 0]
40:59 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 453.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 39.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
40:59 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:59 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:59 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
40:59 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
40:59 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.02678864737736951
40:59 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
40:59 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
40:59 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
40:59 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
40:59 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
40:59 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
40:59 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
40:59 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(50), np.int64(0), np.int64(0), np.int64(450), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
40:59 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
40:59 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
40:59 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
40:59 DEBUG   opendrift:2101: ======================================================================
40:59 INFO    opendrift:2102: 2025-05-20 04:09:03.420424 - step 86 of 96 - 500 active elements (0 deactivated)
40:59 DEBUG   opendrift:2108: 0 elements scheduled.
40:59 DEBUG   opendrift:2110: ======================================================================
40:59 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.798211122326386
40:59 DEBUG   opendrift:2121:                10.459926698199116 <- longitude -> 10.78098429490882
40:59 DEBUG   opendrift:2121:                -36.13536832880667 <- z -> -0.3786068482952629
40:59 DEBUG   opendrift:2122: ---------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
40:59 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
40:59 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
40:59 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
40:59 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
40:59 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 04:00:00 (before)
                2025-05-20 05:00:00 (after)
41:02 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
41:02 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
41:02 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
41:02 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
41:02 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
41:02 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
41:02 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 56x51x7) for time after (2025-05-20 05:00:00)
41:02 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 04:00:00) in space  (linearNDFast)
41:02 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:02 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 05:00:00) in space  (linearNDFast)
41:02 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:02 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 04:00:00, weight 0.85) and
                      after (2025-05-20 05:00:00, weight 0.15) in time
41:02 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
41:02 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.540084333083904 and -59.21902672114724 degrees.
41:02 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.540084333083904 and -59.21902672114724 degrees.
41:02 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:02 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
41:02 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
41:02 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
41:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:02 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:02 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:02 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
41:02 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
41:02 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
41:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:02 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
41:02 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:02 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:02 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
41:02 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
41:02 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
41:02 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
41:02 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
41:02 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
41:02 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.509807 (min) 0.359998 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0821801 (min) 0.329325 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.459992 (min) -0.409024 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 3.25228 (min) 6.25348 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 1.0759 (min) 3.17588 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 86.2632 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 8.00807 (min) 13.1336 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 26.0731 (min) 34.9278 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000915901 (min) 0.000927409 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
41:02 DEBUG   opendrift:699: No elements hit coastline.
41:02 DEBUG   opendrift:730: No elements hit seafloor.
41:02 DEBUG   opendrift:1745: No elements to deactivate
41:02 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
41:02 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
41:02 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
41:02 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
41:02 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3]
41:02 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0]
41:02 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 453.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 40.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
41:02 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:02 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:02 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
41:02 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
41:02 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.029099229538104374
41:02 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
41:02 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
41:02 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
41:02 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
41:02 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:02 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:02 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(51), np.int64(0), np.int64(0), np.int64(449), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
41:02 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
41:02 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
41:02 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
41:02 DEBUG   opendrift:2101: ======================================================================
41:02 INFO    opendrift:2102: 2025-05-20 04:39:03.420424 - step 87 of 96 - 500 active elements (0 deactivated)
41:02 DEBUG   opendrift:2108: 0 elements scheduled.
41:02 DEBUG   opendrift:2110: ======================================================================
41:02 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.800370415839474
41:02 DEBUG   opendrift:2121:                10.450855340568253 <- longitude -> 10.78098429490882
41:02 DEBUG   opendrift:2121:                -33.79429734591257 <- z -> -0.5219206385374139
41:02 DEBUG   opendrift:2122: ---------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
41:02 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
41:02 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
41:02 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 04:00:00 (before)
                2025-05-20 05:00:00 (after)
41:02 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 04:00:00) in space  (linearNDFast)
41:02 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:02 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 05:00:00) in space  (linearNDFast)
41:02 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:02 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 04:00:00, weight 0.35) and
                      after (2025-05-20 05:00:00, weight 0.65) in time
41:02 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
41:02 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.54915569608671 and -59.21902672114724 degrees.
41:02 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.54915569608671 and -59.21902672114724 degrees.
41:02 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:02 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
41:02 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
41:02 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
41:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:02 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:02 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:02 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
41:02 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
41:02 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
41:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:02 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
41:02 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:02 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:02 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
41:02 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
41:02 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
41:02 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
41:02 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
41:02 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
41:02 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.347903 (min) 0.345508 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.0925521 (min) 0.368974 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.430961 (min) -0.378694 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 3.70322 (min) 6.24717 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 1.06861 (min) 2.95085 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 86.7157 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 7.9696 (min) 13.1286 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.3222 (min) 34.9782 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000698773 (min) 0.00102825 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
41:02 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
41:02 DEBUG   opendrift:699: No elements hit coastline.
41:02 DEBUG   opendrift:730: No elements hit seafloor.
41:02 DEBUG   opendrift:1745: No elements to deactivate
41:02 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
41:02 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
41:02 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
41:02 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
41:02 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3 3]
41:02 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0 0]
41:02 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 453.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 42.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
41:02 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:02 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:02 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
41:02 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
41:02 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.02931994139493467
41:02 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
41:02 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
41:02 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:02 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:02 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
41:02 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
41:02 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:02 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:02 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(53), np.int64(0), np.int64(0), np.int64(447), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
41:02 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
41:02 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
41:02 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
41:02 DEBUG   opendrift:2101: ======================================================================
41:02 INFO    opendrift:2102: 2025-05-20 05:09:03.420424 - step 88 of 96 - 500 active elements (0 deactivated)
41:02 DEBUG   opendrift:2108: 0 elements scheduled.
41:02 DEBUG   opendrift:2110: ======================================================================
41:02 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.80349091344538
41:02 DEBUG   opendrift:2121:                10.440445809910747 <- longitude -> 10.78098429490882
41:02 DEBUG   opendrift:2121:                -32.111564940879084 <- z -> -0.07325149240669604
41:02 DEBUG   opendrift:2122: ---------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
41:02 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
41:02 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:02 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
41:02 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 05:00:00 (before)
                2025-05-20 06:00:00 (after)
41:04 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
41:04 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
41:04 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
41:04 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
41:04 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
41:04 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
41:04 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 57x52x7) for time after (2025-05-20 06:00:00)
41:04 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 05:00:00) in space  (linearNDFast)
41:04 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:04 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 06:00:00) in space  (linearNDFast)
41:04 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:04 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 05:00:00, weight 0.85) and
                      after (2025-05-20 06:00:00, weight 0.15) in time
41:04 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
41:04 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.55956522576924 and -59.21902672160231 degrees.
41:04 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.55956522576924 and -59.21902672160231 degrees.
41:04 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:04 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
41:04 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
41:04 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:04 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
41:04 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:04 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:04 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:04 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
41:04 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
41:04 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:04 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
41:04 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:04 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
41:04 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:04 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:04 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
41:04 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
41:04 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
41:04 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
41:04 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
41:04 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
41:04 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.320844 (min) 0.320349 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.15682 (min) 0.45771 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.398016 (min) -0.346165 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 4.03855 (min) 6.21685 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 0.998848 (min) 2.72357 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 89.0921 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 7.96401 (min) 13.1282 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.4011 (min) 34.9858 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000610403 (min) 0.00106712 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
41:04 DEBUG   opendrift:699: No elements hit coastline.
41:04 DEBUG   opendrift:730: No elements hit seafloor.
41:04 DEBUG   opendrift:1745: No elements to deactivate
41:04 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
41:04 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
41:04 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
41:04 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
41:04 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 0]
41:04 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 3]
41:04 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 455.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 42.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
41:04 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:04 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:04 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
41:04 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
41:04 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.02946763632626587
41:04 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
41:04 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
41:04 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
41:04 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
41:04 DEBUG   opendrift:735: Lifting 2 elements to seafloor.
41:04 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
41:04 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
41:04 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:04 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:04 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(51), np.int64(0), np.int64(0), np.int64(449), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
41:04 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
41:04 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
41:04 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
41:04 DEBUG   opendrift:2101: ======================================================================
41:04 INFO    opendrift:2102: 2025-05-20 05:39:03.420424 - step 89 of 96 - 500 active elements (0 deactivated)
41:04 DEBUG   opendrift:2108: 0 elements scheduled.
41:04 DEBUG   opendrift:2110: ======================================================================
41:04 DEBUG   opendrift:2121:                57.5482757113843 <- latitude -> 57.80964897690449
41:04 DEBUG   opendrift:2121:                10.431724880096075 <- longitude -> 10.780984294908823
41:04 DEBUG   opendrift:2121:                -35.09254859230448 <- z -> 0.0
41:04 DEBUG   opendrift:2122: ---------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
41:04 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
41:04 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:04 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
41:04 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 05:00:00 (before)
                2025-05-20 06:00:00 (after)
41:04 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 05:00:00) in space  (linearNDFast)
41:04 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:04 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 06:00:00) in space  (linearNDFast)
41:04 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:04 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 05:00:00, weight 0.35) and
                      after (2025-05-20 06:00:00, weight 0.65) in time
41:04 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
41:04 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.56828616211814 and -59.21902672160231 degrees.
41:04 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.56828616211814 and -59.21902672160231 degrees.
41:04 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:04 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
41:04 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
41:04 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:04 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
41:04 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:04 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:04 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:04 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
41:04 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
41:04 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:04 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
41:04 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:04 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
41:04 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:04 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:04 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
41:04 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
41:04 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
41:04 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
41:04 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
41:04 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
41:04 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.221136 (min) 0.271812 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.189549 (min) 0.47201 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.357099 (min) -0.308552 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 4.00121 (min) 6.08211 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: 0.291262 (min) 2.34968 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 90.8454 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 7.95811 (min) 13.1382 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 24.9286 (min) 34.9955 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.00035284 (min) 0.00109475 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
41:04 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
41:04 DEBUG   opendrift:699: No elements hit coastline.
41:04 DEBUG   opendrift:730: No elements hit seafloor.
41:04 DEBUG   opendrift:1745: No elements to deactivate
41:04 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
41:04 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
41:04 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
41:04 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 0
41:04 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
41:04 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.030005460951792608
41:04 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
41:04 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
41:04 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
41:04 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:04 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:04 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
41:04 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
41:04 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:04 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:04 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(51), np.int64(0), np.int64(0), np.int64(449), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
41:04 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
41:04 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
41:04 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
41:04 DEBUG   opendrift:2101: ======================================================================
41:04 INFO    opendrift:2102: 2025-05-20 06:09:03.420424 - step 90 of 96 - 500 active elements (0 deactivated)
41:04 DEBUG   opendrift:2108: 0 elements scheduled.
41:04 DEBUG   opendrift:2110: ======================================================================
41:04 DEBUG   opendrift:2121:                57.54827571138429 <- latitude -> 57.812196889905174
41:04 DEBUG   opendrift:2121:                10.429313422923798 <- longitude -> 10.780984294908828
41:04 DEBUG   opendrift:2121:                -33.586383862603974 <- z -> -0.3870729779739963
41:04 DEBUG   opendrift:2122: ---------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
41:04 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
41:04 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:04 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:04 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
41:04 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 06:00:00 (before)
                2025-05-20 07:00:00 (after)
41:06 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
41:06 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
41:06 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
41:06 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
41:06 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
41:06 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
41:06 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 57x53x7) for time after (2025-05-20 07:00:00)
41:06 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 06:00:00) in space  (linearNDFast)
41:06 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:06 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 07:00:00) in space  (linearNDFast)
41:06 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:06 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 06:00:00, weight 0.85) and
                      after (2025-05-20 07:00:00, weight 0.15) in time
41:06 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
41:06 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.570697610337035 and -59.21902672160231 degrees.
41:06 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.570697610337035 and -59.21902672160231 degrees.
41:06 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:06 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
41:06 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
41:06 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:06 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
41:06 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:06 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:06 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:06 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
41:06 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
41:06 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:06 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
41:06 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:06 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
41:06 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:06 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:06 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
41:06 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
41:06 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
41:06 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
41:06 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
41:06 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
41:06 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.17316 (min) 0.257684 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.260207 (min) 0.462119 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.320252 (min) -0.272616 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 3.88882 (min) 6.3422 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -0.300246 (min) 2.09416 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 92.5999 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 7.95134 (min) 13.1512 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.9759 (min) 35.0067 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000249868 (min) 0.00120001 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
41:06 DEBUG   opendrift:699: No elements hit coastline.
41:06 DEBUG   opendrift:730: No elements hit seafloor.
41:06 DEBUG   opendrift:1745: No elements to deactivate
41:06 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
41:06 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
41:06 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
41:06 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
41:06 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3]
41:06 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0]
41:06 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 455.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 43.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
41:06 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:06 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:06 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
41:06 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
41:06 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.029749742841950692
41:06 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
41:06 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
41:06 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
41:06 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
41:06 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
41:06 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:06 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:06 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(52), np.int64(0), np.int64(0), np.int64(448), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
41:06 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
41:06 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
41:06 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
41:06 DEBUG   opendrift:2101: ======================================================================
41:06 INFO    opendrift:2102: 2025-05-20 06:39:03.420424 - step 91 of 96 - 500 active elements (0 deactivated)
41:06 DEBUG   opendrift:2108: 0 elements scheduled.
41:06 DEBUG   opendrift:2110: ======================================================================
41:06 DEBUG   opendrift:2121:                57.54827571138429 <- latitude -> 57.8117572664374
41:06 DEBUG   opendrift:2121:                10.431151582944603 <- longitude -> 10.780984294908828
41:06 DEBUG   opendrift:2121:                -36.12028281372208 <- z -> -0.32172712604052134
41:06 DEBUG   opendrift:2122: ---------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
41:06 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
41:06 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:06 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
41:06 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 06:00:00 (before)
                2025-05-20 07:00:00 (after)
41:06 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 06:00:00) in space  (linearNDFast)
41:06 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:06 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 07:00:00) in space  (linearNDFast)
41:06 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:06 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 06:00:00, weight 0.35) and
                      after (2025-05-20 07:00:00, weight 0.65) in time
41:06 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
41:06 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.568859457838585 and -59.21902672160231 degrees.
41:06 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.568859457838585 and -59.21902672160231 degrees.
41:06 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:06 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
41:06 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
41:06 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:06 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
41:06 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:06 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:06 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:06 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
41:06 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
41:06 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:06 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
41:06 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:06 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
41:06 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:06 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:06 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
41:06 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
41:06 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
41:06 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
41:06 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
41:06 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
41:06 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.166704 (min) 0.190843 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.335944 (min) 0.434185 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.283938 (min) -0.23883 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 3.51383 (min) 5.71219 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -0.507064 (min) 1.81771 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 92.4843 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 7.95517 (min) 13.1712 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.9586 (min) 35.0048 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000141934 (min) 0.00118233 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
41:06 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
41:06 DEBUG   opendrift:699: No elements hit coastline.
41:06 DEBUG   opendrift:730: No elements hit seafloor.
41:06 DEBUG   opendrift:1745: No elements to deactivate
41:06 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
41:06 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
41:06 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
41:06 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
41:06 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3]
41:06 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0]
41:06 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 455.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 44.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
41:06 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:06 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:06 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
41:06 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
41:06 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.024220638365281197
41:06 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
41:06 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
41:06 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:06 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
41:06 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
41:06 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:06 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:06 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(53), np.int64(0), np.int64(0), np.int64(447), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
41:06 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
41:06 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
41:06 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
41:06 DEBUG   opendrift:2101: ======================================================================
41:06 INFO    opendrift:2102: 2025-05-20 07:09:03.420424 - step 92 of 96 - 500 active elements (0 deactivated)
41:06 DEBUG   opendrift:2108: 0 elements scheduled.
41:06 DEBUG   opendrift:2110: ======================================================================
41:06 DEBUG   opendrift:2121:                57.54827571138429 <- latitude -> 57.810949403392385
41:06 DEBUG   opendrift:2121:                10.433089480807434 <- longitude -> 10.780984294908833
41:06 DEBUG   opendrift:2121:                -35.42489187696559 <- z -> -0.0014805405965795382
41:06 DEBUG   opendrift:2122: ---------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
41:06 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
41:06 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:06 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:06 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
41:06 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 07:00:00 (before)
                2025-05-20 08:00:00 (after)
41:08 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
41:08 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
41:08 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
41:08 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
41:08 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
41:08 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
41:08 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 57x53x7) for time after (2025-05-20 08:00:00)
41:08 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 07:00:00) in space  (linearNDFast)
41:08 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:08 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 08:00:00) in space  (linearNDFast)
41:08 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:08 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 07:00:00, weight 0.85) and
                      after (2025-05-20 08:00:00, weight 0.15) in time
41:08 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
41:08 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.5669215682812 and -59.21902672160231 degrees.
41:08 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.5669215682812 and -59.21902672160231 degrees.
41:08 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:08 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
41:08 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
41:08 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
41:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:08 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:08 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:08 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
41:08 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
41:08 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
41:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:08 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
41:08 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:08 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:08 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
41:08 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
41:08 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
41:08 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
41:08 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
41:08 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
41:08 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.156668 (min) 0.211304 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.38622 (min) 0.406028 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.250305 (min) -0.206138 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 2.59593 (min) 5.06034 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -0.622758 (min) 1.46271 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49322 (min) 92.1603 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 7.94982 (min) 13.1942 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 24.9778 (min) 35.0135 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000104787 (min) 0.00114346 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
41:08 DEBUG   opendrift:699: No elements hit coastline.
41:08 DEBUG   opendrift:730: No elements hit seafloor.
41:08 DEBUG   opendrift:1745: No elements to deactivate
41:08 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
41:08 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
41:08 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
41:08 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
41:08 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3 0]
41:08 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0 3]
41:08 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 456.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 45.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
41:08 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:08 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:08 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
41:08 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
41:08 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.019078184316774965
41:08 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
41:08 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
41:08 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
41:08 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
41:08 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
41:08 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:08 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:08 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(53), np.int64(0), np.int64(0), np.int64(447), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
41:08 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
41:08 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
41:08 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
41:08 DEBUG   opendrift:2101: ======================================================================
41:08 INFO    opendrift:2102: 2025-05-20 07:39:03.420424 - step 93 of 96 - 500 active elements (0 deactivated)
41:08 DEBUG   opendrift:2108: 0 elements scheduled.
41:08 DEBUG   opendrift:2110: ======================================================================
41:08 DEBUG   opendrift:2121:                57.54827571138429 <- latitude -> 57.81222826587315
41:08 DEBUG   opendrift:2121:                10.435055902240086 <- longitude -> 10.78098429490883
41:08 DEBUG   opendrift:2121:                -34.25742013286933 <- z -> -0.45818421359810113
41:08 DEBUG   opendrift:2122: ---------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
41:08 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
41:08 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
41:08 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 07:00:00 (before)
                2025-05-20 08:00:00 (after)
41:08 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 07:00:00) in space  (linearNDFast)
41:08 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:08 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 08:00:00) in space  (linearNDFast)
41:08 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:08 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 07:00:00, weight 0.35) and
                      after (2025-05-20 08:00:00, weight 0.65) in time
41:08 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
41:08 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.56495512496683 and -59.21902672160231 degrees.
41:08 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.56495512496683 and -59.21902672160231 degrees.
41:08 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:08 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
41:08 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
41:08 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
41:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:08 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:08 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:08 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
41:08 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
41:08 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
41:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:08 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
41:08 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:08 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:08 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
41:08 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
41:08 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
41:08 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
41:08 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
41:08 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
41:08 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.141499 (min) 0.177045 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.374092 (min) 0.326366 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.223132 (min) -0.177595 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 1.96309 (min) 4.38042 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -0.676296 (min) 1.19702 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 92.3626 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 7.95115 (min) 13.2242 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 24.9885 (min) 35.0121 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000236112 (min) 0.0010556 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
41:08 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
41:08 DEBUG   opendrift:699: No elements hit coastline.
41:08 DEBUG   opendrift:730: No elements hit seafloor.
41:08 DEBUG   opendrift:1745: No elements to deactivate
41:08 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
41:08 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
41:08 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
41:08 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 0
41:08 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
41:08 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.014137442084541796
41:08 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
41:08 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
41:08 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:08 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:08 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
41:08 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
41:08 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:08 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:08 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(53), np.int64(0), np.int64(0), np.int64(447), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
41:08 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
41:08 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
41:08 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
41:08 DEBUG   opendrift:2101: ======================================================================
41:08 INFO    opendrift:2102: 2025-05-20 08:09:03.420424 - step 94 of 96 - 500 active elements (0 deactivated)
41:08 DEBUG   opendrift:2108: 0 elements scheduled.
41:08 DEBUG   opendrift:2110: ======================================================================
41:08 DEBUG   opendrift:2121:                57.54827571138429 <- latitude -> 57.81333945612646
41:08 DEBUG   opendrift:2121:                10.437190151296956 <- longitude -> 10.780984294908832
41:08 DEBUG   opendrift:2121:                -31.85694694519043 <- z -> -0.09245790424348743
41:08 DEBUG   opendrift:2122: ---------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
41:08 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
41:08 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:08 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
41:08 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 08:00:00 (before)
                2025-05-20 09:00:00 (after)
41:11 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
41:11 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
41:11 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
41:11 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
41:11 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
41:11 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
41:11 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 58x52x7) for time after (2025-05-20 09:00:00)
41:11 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 08:00:00) in space  (linearNDFast)
41:11 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:11 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 09:00:00) in space  (linearNDFast)
41:11 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:11 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 08:00:00, weight 0.85) and
                      after (2025-05-20 09:00:00, weight 0.15) in time
41:11 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
41:11 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.562820880508376 and -59.21902672160231 degrees.
41:11 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.562820880508376 and -59.21902672160231 degrees.
41:11 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:11 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
41:11 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
41:11 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:11 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
41:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:11 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:11 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:11 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
41:11 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
41:11 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:11 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
41:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:11 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
41:11 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:11 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:11 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
41:11 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
41:11 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
41:11 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
41:11 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
41:11 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
41:11 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.12937 (min) 0.185291 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.395587 (min) 0.301265 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.199562 (min) -0.151565 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 1.60084 (min) 4.45866 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -0.928669 (min) 0.770186 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 93.0089 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 7.95314 (min) 13.255 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 24.9978 (min) 35.0098 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000305173 (min) 0.000956925 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
41:11 DEBUG   opendrift:699: No elements hit coastline.
41:11 DEBUG   opendrift:730: No elements hit seafloor.
41:11 DEBUG   opendrift:1745: No elements to deactivate
41:11 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
41:11 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
41:11 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
41:11 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 1
41:11 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0]
41:11 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3]
41:11 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 457.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 45.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
41:11 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:11 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:11 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
41:11 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
41:11 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.01452315694142292
41:11 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
41:11 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
41:11 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
41:11 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
41:11 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
41:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:11 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
41:11 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
41:11 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:11 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:11 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(52), np.int64(0), np.int64(0), np.int64(448), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
41:11 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
41:11 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
41:11 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
41:11 DEBUG   opendrift:2101: ======================================================================
41:11 INFO    opendrift:2102: 2025-05-20 08:39:03.420424 - step 95 of 96 - 500 active elements (0 deactivated)
41:11 DEBUG   opendrift:2108: 0 elements scheduled.
41:11 DEBUG   opendrift:2110: ======================================================================
41:11 DEBUG   opendrift:2121:                57.54827571138429 <- latitude -> 57.81237894920516
41:11 DEBUG   opendrift:2121:                10.43921047870279 <- longitude -> 10.780984294908832
41:11 DEBUG   opendrift:2121:                -34.45434251472276 <- z -> -1.0974160891491902
41:11 DEBUG   opendrift:2122: ---------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
41:11 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
41:11 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:11 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
41:11 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 08:00:00 (before)
                2025-05-20 09:00:00 (after)
41:11 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 08:00:00) in space  (linearNDFast)
41:11 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:11 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 09:00:00) in space  (linearNDFast)
41:11 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:11 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 08:00:00, weight 0.35) and
                      after (2025-05-20 09:00:00, weight 0.65) in time
41:11 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
41:11 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.56080056922908 and -59.21902672160231 degrees.
41:11 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.56080056922908 and -59.21902672160231 degrees.
41:11 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:11 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
41:11 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
41:11 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:11 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
41:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:11 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:11 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:11 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
41:11 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
41:11 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:11 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
41:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:11 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
41:11 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:11 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:11 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
41:11 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
41:11 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
41:11 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
41:11 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
41:11 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
41:11 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.153449 (min) 0.194203 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.363032 (min) 0.209225 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.184381 (min) -0.131977 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 1.3045 (min) 5.17515 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -1.75402 (min) 0.0874688 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 92.2922 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 7.95519 (min) 13.2878 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.0099 (min) 35.0068 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000286006 (min) 0.000833274 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
41:11 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
41:11 DEBUG   opendrift:699: No elements hit coastline.
41:11 DEBUG   opendrift:730: No elements hit seafloor.
41:11 DEBUG   opendrift:1745: No elements to deactivate
41:11 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
41:11 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
41:11 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
41:11 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 2
41:11 DEBUG   opendrift.models.chemicaldrift:1473: old species: [3 0]
41:11 DEBUG   opendrift.models.chemicaldrift:1474: new species: [0 3]
41:11 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 458.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 46.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
41:11 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:11 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:11 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
41:11 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
41:11 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.019527955797592634
41:11 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
41:11 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
41:11 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
41:11 DEBUG   opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
41:11 DEBUG   opendrift:735: Lifting 1 elements to seafloor.
41:11 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:11 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:11 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
41:11 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
41:11 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:11 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:11 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(52), np.int64(0), np.int64(0), np.int64(448), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
41:11 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
41:11 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
41:11 DEBUG   opendrift:872: to be seeded: 0, already seeded 500
41:11 DEBUG   opendrift:2101: ======================================================================
41:11 INFO    opendrift:2102: 2025-05-20 09:09:03.420424 - step 96 of 96 - 500 active elements (0 deactivated)
41:11 DEBUG   opendrift:2108: 0 elements scheduled.
41:11 DEBUG   opendrift:2110: ======================================================================
41:11 DEBUG   opendrift:2121:                57.54827571138429 <- latitude -> 57.81273848997892
41:11 DEBUG   opendrift:2121:                10.441408691058948 <- longitude -> 10.780984294908832
41:11 DEBUG   opendrift:2121:                -35.34362381057692 <- z -> -0.2837210353494648
41:11 DEBUG   opendrift:2122: ---------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
41:11 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
41:11 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:11 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:11 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
41:11 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-05-20 09:00:00 (before)
                2025-05-20 10:00:00 (after)
41:13 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
41:13 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
41:13 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
41:13 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
41:13 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
41:13 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'upward_sea_water_velocity']
41:13 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 58x52x7) for time after (2025-05-20 10:00:00)
41:13 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-05-20 09:00:00) in space  (linearNDFast)
41:13 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:13 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-05-20 10:00:00) in space  (linearNDFast)
41:13 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
41:13 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-05-20 09:00:00, weight 0.85) and
                      after (2025-05-20 10:00:00, weight 0.15) in time
41:13 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
41:13 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.55860233884884 and -59.21902672160231 degrees.
41:13 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.55860233884884 and -59.21902672160231 degrees.
41:13 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:13 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:13 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
41:13 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:13 DEBUG   opendrift.models.basemodel.environment:597: Calling reader constant_reader
41:13 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:13 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:13 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
41:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:13 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:13 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:13 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:13 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
41:13 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:13 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
41:13 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:13 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:13 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
41:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:13 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
41:13 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:13 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:13 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
41:13 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
41:13 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
41:13 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 10 for sea_water_temperature for 0 profiles
41:13 DEBUG   opendrift.models.basemodel.environment:798:       Using fallback value 34 for sea_water_salinity for 0 profiles
41:13 DEBUG   opendrift.models.basemodel.environment:787:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
41:13 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
41:13 DEBUG   opendrift.models.basemodel.environment:889:     x_sea_water_velocity: -0.189587 (min) 0.223138 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     y_sea_water_velocity: -0.364477 (min) 0.15544 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     sea_surface_height: -0.173031 (min) -0.115822 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     x_wind: 0.122154 (min) 5.51165 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     y_wind: -2.4896 (min) -0.276068 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     sea_floor_depth_below_sea_level: 9.49467 (min) 91.4107 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_temperature: 7.9562 (min) 13.3278 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_salinity: 25.017 (min) 35.0043 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     upward_sea_water_velocity: -0.000270312 (min) 0.000697668 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     spm: 1 (min) 1 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     doc: 0 (min) 0 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:889:     pH_sediment: 6.9 (min) 6.9 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
41:13 DEBUG   opendrift:699: No elements hit coastline.
41:13 DEBUG   opendrift:730: No elements hit seafloor.
41:13 DEBUG   opendrift:1745: No elements to deactivate
41:13 DEBUG   opendrift:2157: Calling ChemicalDrift.update()
41:13 DEBUG   opendrift.models.chemicaldrift:1688: Calculating overall degradation using overall rate constants
41:13 DEBUG   opendrift.models.chemicaldrift:1745: Calculating: volatilization
41:13 INFO    opendrift.models.chemicaldrift:1456: Number of transformations: 3
41:13 DEBUG   opendrift.models.chemicaldrift:1473: old species: [0 3 0]
41:13 DEBUG   opendrift.models.chemicaldrift:1474: new species: [3 0 3]
41:13 DEBUG   opendrift.models.chemicaldrift:1481: Number of transformations total:
 [[  0.   0.   0. 460.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  36.   0.]
 [ 47.   0.   0.   0.   0.]
 [  0.   0.   0.   0.   0.]]
41:13 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:13 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:13 DEBUG   opendrift.models.chemicaldrift:1525: Adding uncertainty for desorption from sediments: 0.5 m
41:13 DEBUG   opendrift.models.oceandrift:436: Using functional expression for diffusivity
41:13 DEBUG   opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.02255252359536623
41:13 DEBUG   opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
41:13 DEBUG   opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
41:13 DEBUG   opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
41:13 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:13 DEBUG   opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
41:13 DEBUG   opendrift:735: Lifting 2 elements to seafloor.
41:13 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:13 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:13 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:13 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:13 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:13 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:13 DEBUG   opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
41:13 DEBUG   opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
41:13 INFO    opendrift.models.chemicaldrift:1654: Number of resuspended particles: 0
41:13 DEBUG   opendrift.models.chemicaldrift:1659: Adding uncertainty for resuspension from sediments: 0.5 m
41:13 DEBUG   opendrift.models.chemicaldrift:1560: Updated particle diameter for 0 elements
41:13 DEBUG   opendrift.models.chemicaldrift:1564: Adding uncertainty for particle diameter: 5e-06 m
41:13 INFO    opendrift.models.chemicaldrift:1884: partitioning: [np.int64(51), np.int64(0), np.int64(0), np.int64(449), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
41:13 DEBUG   opendrift.models.oceandrift:310: Vertical advection, including elements at surface
41:13 DEBUG   opendrift:1696: Horizontal diffusivity is 0, no random walk.
41:13 DEBUG   opendrift:2195: Cleaning up
41:13 DEBUG   opendrift.models.basemodel.environment:591: ----------------------------------------
41:13 DEBUG   opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
41:13 DEBUG   opendrift.models.basemodel.environment:593: ----------------------------------------
41:13 DEBUG   opendrift.models.basemodel.environment:597: Calling reader global_landmask
41:13 DEBUG   opendrift.models.basemodel.environment:598: ----------------------------------------
41:13 DEBUG   opendrift.models.basemodel.environment:614: Data needed for 500 elements
41:13 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
41:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:13 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
41:13 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
41:13 DEBUG   opendrift.models.basemodel.environment:748: Obtained data for all elements.
41:13 DEBUG   opendrift.models.basemodel.environment:761: ---------------------------------------
41:13 DEBUG   opendrift.models.basemodel.environment:762: Finished processing all variable groups
41:13 DEBUG   opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
41:13 DEBUG   opendrift.models.basemodel.environment:889:     land_binary_mask: 0 (min) 0 (max)
41:13 DEBUG   opendrift.models.basemodel.environment:891: ---------------------------------
41:13 DEBUG   opendrift:699: No elements hit coastline.
41:13 DEBUG   opendrift:2281: Updating minval and maxval
41:13 DEBUG   opendrift:2361: Writing to file
41:13 DEBUG   opendrift:1745: No elements to deactivate
41:13 DEBUG   opendrift:100: Changed mode from Mode.Run to Mode.Result

Print and plot results

print('Final speciation:')
for isp,sp in enumerate(o.name_species):
    print ('{:32}: {:>6}'.format(sp,sum(o.elements.specie==isp)))

print('Number of transformations:')
for isp in range(o.nspecies):
    print('{}'.format(['{:>9}'.format(np.int32(item)) for item in o.ntransformations[isp,:]]) )

m_pre = o.result.mass.isel(time=-1).sum()
m_deg = o.result.mass_degraded.isel(time=-1).sum()
m_vol = o.result.mass_volatilized.isel(time=-1).sum()
m_tot = m_pre + m_deg + m_vol

print('Mass budget for target chemical:')
print('mass preserved       : {:.3f}'.format(m_pre * 1e-6),' g   {:.3f}'.format(m_pre/m_tot*100),'%')
print('mass degraded        : {:.3f}'.format(m_deg * 1e-6),' g   {:.3f}'.format(m_deg/m_tot*100),'%')
print('mass volatilized     : {:.3f}'.format(m_vol * 1e-6),' g   {:.3f}'.format(m_vol/m_tot*100),'%')

legend=['dissolved', '', 'SPM', 'sediment', '']

o.animation_profile(color='specie',
            markersize='mass',
            markersize_scaling=30,
            alpha=.5,
            vmin=0,vmax=o.nspecies-1,
            legend = legend,
            legend_loc = 3,
            fps = 10
            )

Final speciation:
LMM                             :     51
Humic colloid                   :      0
Particle reversible             :      0
Sediment reversible             :    449
Sediment slowly reversible      :      0
Number of transformations:
['        0', '        0', '        0', '      460', '        0']
['        0', '        0', '        0', '        0', '        0']
['       15', '        0', '        0', '       36', '        0']
['       47', '        0', '        0', '        0', '        0']
['        0', '        0', '        0', '        0', '        0']
Mass budget for target chemical:
mass preserved       : 0.301  g   30.140 %
mass degraded        : 0.697  g   69.663 %
mass volatilized     : 0.002  g   0.197 %
09:41:13 DEBUG   opendrift:3069: Saving animation..
09:41:13 INFO    opendrift:4609: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_0.gif...
09:41:30 DEBUG   opendrift:4647: MPLBACKEND = agg
09:41:30 DEBUG   opendrift:4648: DISPLAY = None
09:41:30 DEBUG   opendrift:4649: Time to save animation: 0:00:16.291926
09:41:30 INFO    opendrift:3272: Time to make animation: 0:00:16.419994

o.animation(color='specie',
            markersize='mass',
            markersize_scaling=100,
            alpha=.5,
            vmin=0,vmax=o.nspecies-1,
            colorbar=False,
            fast = True,
            legend = legend,
            legend_loc = 3,
            fps=10
            )

41:30 DEBUG   opendrift:2428: Setting up map: corners=None, fast=True, lscale=None
41:30 WARNING opendrift:2459: Plotting fast. This will make your plots less accurate.
41:31 DEBUG   opendrift:3069: Saving animation..
41:31 INFO    opendrift:4609: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_1.gif...
43:07 DEBUG   opendrift:4647: MPLBACKEND = agg
43:07 DEBUG   opendrift:4648: DISPLAY = None
43:07 DEBUG   opendrift:4649: Time to save animation: 0:01:35.963634
43:07 INFO    opendrift:3062: Time to make animation: 0:01:37.604705

o.plot_mass(legend = legend,
            time_unit = 'hours',
            title = 'Chemical mass budget')

dissolved : 0.01808049902319908g (5.998755938243051%)
SPM : 0.0g (0.0%)
sediment : 0.28332364559173584g (94.00124406175695%)
/root/project/opendrift/models/chemicaldrift.py:3366: UserWarning: set_ticklabels() should only be used with a fixed number of ticks, i.e. after set_ticks() or using a FixedLocator.
  ax.axes.get_xaxis().set_ticklabels(np.round(ax.axes.get_xticks() * time_conversion_factor))

Total running time of the script: (4 minutes 15.830 seconds)

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