ChemicalDrift - Transport and fate of organic compounds

from opendrift.readers import reader_netCDF_CF_generic
from opendrift.models.chemicaldrift import ChemicalDrift
from opendrift.readers.reader_constant import Reader as ConstantReader
from datetime import timedelta, datetime
import matplotlib.pyplot as plt
import numpy as np


o = ChemicalDrift(loglevel=0, seed=0)

# Norkyst
reader_norkyst = reader_netCDF_CF_generic.Reader('https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be')
mixed_layer = ConstantReader({'ocean_mixed_layer_thickness': 40})
o.add_reader([reader_norkyst,mixed_layer])

o.set_config('drift:vertical_mixing', True)
o.set_config('vertical_mixing:diffusivitymodel', 'windspeed_Large1994')
o.set_config('chemical:particle_diameter',30.e-6)  # m
o.set_config('chemical:particle_diameter_uncertainty',5.e-6) # m
o.set_config('chemical:sediment:resuspension_critvel',0.15) # m/s
o.set_config('chemical:transformations:volatilization', True)
o.set_config('chemical:transformations:degradation', True)
o.set_config('chemical:transformations:degradation_mode', 'OverallRateConstants')
o.set_config('seed:LMM_fraction',.9)
o.set_config('seed:particle_fraction',.1)
o.set_config('general:coastline_action', 'previous')

o.init_chemical_compound("Phenanthrene")

# Modify half-life times with unrealistic values for this demo
o.set_config('chemical:transformations:t12_W_tot', 6.) # hours
o.set_config('chemical:transformations:t12_S_tot', 12.) # hours

o.list_configspec()

14:22:41 DEBUG   opendrift.config:168: Adding 18 config items from __init__
14:22:41 DEBUG   opendrift.config:178:   Overwriting config item readers:max_number_of_fails
14:22:41 DEBUG   opendrift.config:168: Adding 13 config items from __init__
14:22:41 INFO    opendrift:509: OpenDriftSimulation initialised (version 1.13.0 / v1.13.0-75-gd4c13d2)
14:22:41 DEBUG   opendrift.config:168: Adding 15 config items from oceandrift
14:22:41 DEBUG   opendrift.config:178:   Overwriting config item seed:z
14:22:41 DEBUG   opendrift.config:168: Adding 71 config items from chemicaldrift
14:22:41 INFO    opendrift.readers:58: Opening file with xr.open_dataset
14:22:43 DEBUG   opendrift.readers.reader_netCDF_CF_generic:128: Finding coordinate variables.
14:22:43 DEBUG   opendrift.readers.reader_netCDF_CF_generic:143: Parsing CF grid mapping dictionary: {'grid_mapping_name': 'polar_stereographic', 'straight_vertical_longitude_from_pole': 70.0, 'latitude_of_projection_origin': 90.0, 'standard_parallel': 60.0, 'false_easting': 3192800.0, 'false_northing': 1784000.0, 'semi_major_axis': 6378137.0, 'semi_minor_axis': 6356752.3142, 'proj4': '+proj=stere +lat_0=90 +lat_ts=60 +lon_0=70 +x_0=3192800 +y_0=1784000 +a=6378137 +b=6356752.3142 +units=m +no_defs +type=crs'}
14:22:43 INFO    opendrift.readers.reader_netCDF_CF_generic:338: Detected dimensions: {'x': 'X', 'y': 'Y', 'z': 'depth', 'time': 'time'}
14:22:43 DEBUG   opendrift.readers.reader_netCDF_CF_generic:374: Skipped variables without standard_name: ['angle', 'tke', 'ubar', 'vbar']
14:22:43 DEBUG   opendrift.readers.basereader.variables:612: Setting buffer size 25 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 5 m/s and time span of 1:00:00
14:22:43 DEBUG   opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
14:22:43 DEBUG   opendrift.readers.basereader.variables:567: Adding variable mapping: ['x_wind', 'y_wind'] -> wind_speed
14:22:43 DEBUG   opendrift.readers.basereader.variables:567: Adding variable mapping: ['x_sea_water_velocity', 'y_sea_water_velocity'] -> sea_water_speed
14:22:43 DEBUG   opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
14:22:43 DEBUG   opendrift.models.basemodel.environment:316: Added reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:22:43 DEBUG   opendrift.models.basemodel.environment:316: Added reader constant_reader
environment:constant:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:sea_surface_height [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_surface_height [0] float min: None, max: None [None] Fallback value for s...
environment:constant:x_wind         [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:x_wind         [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:y_wind         [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:y_wind         [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:fallback:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:constant:sea_floor_depth_below_sea_level [None] float min: -20, max: 12000 [None] Depth of seafloor...
environment:fallback:sea_floor_depth_below_sea_level [10000] float min: -20, max: 12000 [None] Depth of seafloor...
environment:constant:ocean_vertical_diffusivity [None] float min: 0, max: 1 [None] Use constant value f...
environment:fallback:ocean_vertical_diffusivity [0.0001] float min: 0, max: 1 [None] Fallback value for o...
environment:constant:sea_water_temperature [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_temperature [10] float min: None, max: None [None] Fallback value for s...
environment:constant:sea_water_salinity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_salinity [34] float min: None, max: None [None] Fallback value for s...
environment:constant:upward_sea_water_velocity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:upward_sea_water_velocity [0] float min: None, max: None [None] Fallback value for u...
environment:constant:spm            [None] float min: None, max: None [None] Use constant value f...
environment:fallback:spm            [1] float min: None, max: None [None] Fallback value for s...
environment:constant:ocean_mixed_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:ocean_mixed_layer_thickness [50] float min: None, max: None [None] Fallback value for o...
environment:constant:active_sediment_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:active_sediment_layer_thickness [0.03] float min: None, max: None [None] Fallback value for a...
environment:constant:doc            [None] float min: None, max: None [None] Use constant value f...
environment:fallback:doc            [0.0] float min: None, max: None [None] Fallback value for d...
environment:constant:sea_water_ph_reported_on_total_scale [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_ph_reported_on_total_scale [8.1] float min: None, max: None [None] Fallback value for s...
environment:constant:pH_sediment    [None] float min: None, max: None [None] Use constant value f...
environment:fallback:pH_sediment    [6.9] float min: None, max: None [None] Fallback value for p...
general:use_auto_landmask           [True] bool   A built-in GSHHG glo...
drift:current_uncertainty           [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:current_uncertainty_uniform   [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:max_speed                     [2.0] float min: 0, max: inf [seconds] Typical maximum spee...
readers:max_number_of_fails         [1] int   min: 0, max: 1000000.0 [number] Readers are discarde...
general:simulation_name             [] str   min length 0, max length 64 Name of simulation...
general:coastline_action            [previous] enum  ['none', 'stranding', 'previous'] None means that obje...
general:coastline_approximation_precision [0.001] float min: 0.0001, max: 0.005 [degrees] The precision of the...
general:time_step_minutes           [60] float min: 0.01, max: 1440 [minutes] Calculation time ste...
general:time_step_output_minutes    [None] float min: 1, max: 1440 [minutes] Output time step, i....
seed:ocean_only                     [True] bool   If True, elements se...
seed:number                         [1] int   min: 1, max: 100000000 [1] The number of elemen...
drift:max_age_seconds               [None] float min: 0, max: inf [seconds] Elements will be dea...
drift:advection_scheme              [euler] enum  ['euler', 'runge-kutta', 'runge-kutta4'] Numerical advection ...
drift:horizontal_diffusivity        [0] float min: 0, max: 100000 [m2/s] Add horizontal diffu...
drift:profiles_depth                [50] float min: 0, max: None [meters] Environment profiles...
drift:wind_uncertainty              [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:relative_wind                 [False] bool   If True, wind drift ...
drift:deactivate_north_of           [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_south_of           [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_east_of            [None] float min: -360, max: 360 [degrees] Elements are deactiv...
drift:deactivate_west_of            [None] float min: -360, max: 360 [degrees] Elements are deactiv...
seed:origin_marker                  [0] float min: None, max: None [None] An integer kept cons...
seed:z                              [0] float min: -10000, max: 0 [m] Depth below sea leve...
seed:wind_drift_factor              [0.02] float min: None, max: None [1] Elements at surface ...
seed:current_drift_factor           [1] float min: None, max: None [1] Elements are moved w...
seed:terminal_velocity              [0.0] float min: None, max: None [m/s] Terminal rise/sinkin...
seed:diameter                       [0.0] float min: None, max: None [m] Seeding value of dia...
seed:density                        [2650.0] float min: None, max: None [kg/m^3] Seeding value of den...
seed:specie                         [0] float min: None, max: None [] Seeding value of spe...
seed:mass                           [1000.0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded                  [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_water            [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_sediment         [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_volatilized               [0] float min: None, max: None [ug] Seeding value of mas...
drift:vertical_advection            [True] bool   Advect elements with...
drift:vertical_mixing               [True] bool   Activate vertical mi...
vertical_mixing:timestep            [60] float min: 0.1, max: 3600 [seconds] Time step used for i...
vertical_mixing:diffusivitymodel    [windspeed_Large1994] enum  ['environment', 'stepfunction', 'windspeed_Sundby1983', 'windspeed_Large1994', 'gls_tke', 'constant'] Algorithm/source use...
vertical_mixing:background_diffusivity [1.2e-05] float min: 0, max: 1 [m2s-1] Background diffusivi...
vertical_mixing:TSprofiles          [False] bool   Update T and S profi...
drift:wind_drift_depth              [0.1] float min: 0, max: 10 [meters] The direct wind drif...
drift:stokes_drift                  [True] bool   Advection elements w...
drift:stokes_drift_profile          [Phillips] enum  ['monochromatic', 'exponential', 'Phillips', 'windsea_swell'] Algorithm to calcula...
drift:use_tabularised_stokes_drift  [False] bool   If True, Stokes drif...
drift:tabularised_stokes_drift_fetch [25000] enum  ['5000', '25000', '50000'] The fetch length whe...
general:seafloor_action             [lift_to_seafloor] enum  ['none', 'lift_to_seafloor', 'deactivate', 'previous'] "deactivate": elemen...
drift:truncate_ocean_model_below_m  [None] float min: 0, max: 10000 [m] Ocean model data are...
seed:seafloor                       [False] bool   Elements are seeded ...
chemical:transfer_setup             [organics] enum  ['Sandnesfj_Al', 'metals', '137Cs_rev', 'custom', 'organics'] ...
chemical:dynamic_partitioning       [True] bool   Toggle dynamic parti...
chemical:slowly_fraction            [False] bool   ...
chemical:irreversible_fraction      [False] bool   ...
chemical:dissolved_diameter         [0] float min: 0, max: 0.0001 [m] ...
chemical:particle_diameter          [3e-05] float min: 0, max: 0.0001 [m] ...
chemical:particle_concentration_half_depth [20] float min: 0, max: 100 [m] ...
chemical:doc_concentration_half_depth [1000] float min: 0, max: 1000 [m] ...
chemical:particle_diameter_uncertainty [5e-06] float min: 0, max: 0.0001 [m] ...
seed:LMM_fraction                   [0.9] float min: 0, max: 1 [] ...
seed:particle_fraction              [0.1] float min: 0, max: 1 [] ...
chemical:species:LMM                [True] bool   Toggle LMM species...
chemical:species:LMMcation          [False] bool   ...
chemical:species:LMManion           [False] bool   ...
chemical:species:Colloid            [False] bool   ...
chemical:species:Humic_colloid      [False] bool   ...
chemical:species:Polymer            [False] bool   ...
chemical:species:Particle_reversible [True] bool   ...
chemical:species:Particle_slowly_reversible [False] bool   ...
chemical:species:Particle_irreversible [False] bool   ...
chemical:species:Sediment_reversible [True] bool   ...
chemical:species:Sediment_slowly_reversible [False] bool   ...
chemical:species:Sediment_irreversible [False] bool   ...
chemical:transformations:Kd         [2.0] float min: 0, max: 1000000000.0 [m3/kg] ...
chemical:transformations:S0         [0.0] float min: 0, max: 100 [PSU] parameter controllin...
chemical:transformations:Dc         [1.16e-05] float min: 0, max: 1000000.0 [] ...
chemical:transformations:slow_coeff [0] float min: 0, max: 1000000.0 [] ...
chemical:transformations:volatilization [True] bool   Chemical is evaporat...
chemical:transformations:degradation [True] bool   Chemical mass is deg...
chemical:transformations:degradation_mode [OverallRateConstants] enum  ['OverallRateConstants'] ...
chemical:transformations:dissociation [nondiss] enum  ['nondiss', 'acid', 'base', 'amphoter'] ...
chemical:transformations:LogKOW     [4.505] float min: -3, max: 10 [Log L/Kg] ...
chemical:transformations:TrefKOW    [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_KOC_Sed [-24900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:DeltaH_KOC_DOM [-25900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:Setchenow  [0.3026] float min: 0, max: 1 [L/mol] ...
chemical:transformations:pKa_acid   [-1] float min: -1, max: 14 [] ...
chemical:transformations:pKa_base   [-1] float min: -1, max: 14 [] ...
chemical:transformations:KOC_DOM    [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:KOC_sed    [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:fOC_SPM    [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:fOC_sed    [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:aggregation_rate [0] float min: 0, max: 1 [s-1] ...
chemical:transformations:t12_W_tot  [6.0] float min: 1, max: None [hours] half life in water, ...
chemical:transformations:Tref_kWt   [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kWt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:t12_S_tot  [12.0] float min: 1, max: None [hours] half life in sedimen...
chemical:transformations:Tref_kSt   [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kSt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:MolWt      [178.226] float min: 50, max: 1000 [amu] molecular weight...
chemical:transformations:Henry      [4.294e-05] float min: None, max: None [atm m3 mol-1] Henry constant...
chemical:transformations:Vpress     [0.0222] float min: None, max: None [Pa] Vapour pressure...
chemical:transformations:Tref_Vpress [25.0] float min: None, max: None [C] Vapour pressure ref ...
chemical:transformations:DeltaH_Vpress [71733.0] float min: -100000.0, max: 115000.0 [J/mol] Enthalpy of volatili...
chemical:transformations:Solub      [1.09] float min: None, max: None [g/m3] Solubility...
chemical:transformations:Tref_Solub [25.0] float min: None, max: None [C] Solubility ref temp...
chemical:transformations:DeltaH_Solub [34800.0] float min: -100000.0, max: 100000.0 [J/mol] Enthalpy of solubili...
chemical:sediment:mixing_depth      [0.03] float min: 0, max: 100 [m] ...
chemical:sediment:density           [2600] float min: 0, max: 10000 [kg/m3] ...
chemical:sediment:effective_fraction [0.9] float min: 0, max: 1 [] ...
chemical:sediment:corr_factor       [0.1] float min: 0, max: 10 [] ...
chemical:sediment:porosity          [0.6] float min: 0, max: 1 [] ...
chemical:sediment:layer_thickness   [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth  [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth [1] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_critvel [0.15] float min: 0, max: 1 [m/s] ...
chemical:sediment:burial_rate       [3e-05] float min: 0, max: 10 [m/year] ...
chemical:sediment:buried_leaking_rate [0] float min: 0, max: 10 [s-1] ...
chemical:compound                   [Phenanthrene] enum  ['Naphthalene', 'Phenanthrene', 'Fluoranthene', 'Benzo-a-anthracene', 'Benzo-a-pyrene', 'Dibenzo-ah-anthracene', 'C1-Naphthalene', 'Acenaphthene', 'Acenaphthylene', 'Fluorene', 'Dibenzothiophene', 'C2-Naphthalene', 'Anthracene', 'C3-Naphthalene', 'C1-Dibenzothiophene', 'Pyrene', 'C1-Phenanthrene', 'C2-Dibenzothiophene', 'C2-Phenanthrene', 'Benzo-b-fluoranthene', 'Chrysene', 'C3-Dibenzothiophene', 'C3-Phenanthrene', 'Benzo-k-fluoranthene', 'Benzo-ghi-perylene', 'Indeno-123cd-pyrene', 'Copper', 'Cadmium', 'Chromium', 'Lead', 'Vanadium', 'Zinc', 'Nickel', None] ...

Seeding 500 lagrangian elements each representign 2mg og target chemical

td=datetime.today()
time = td - timedelta(days=10)

latseed= 57.6;   lonseed= 10.6 # Skagen

ntraj=500
iniz=np.random.rand(ntraj) * -10. # seeding the chemicals in the upper 10m

o.seed_elements(lonseed, latseed, z=iniz, radius=2000,number=ntraj,time=time, mass=2e3)

22:43 DEBUG   opendrift.models.chemicaldrift:870: Partitioning coefficients (Tref,freshwater)
22:43 DEBUG   opendrift.models.chemicaldrift:871: KOC_sed: 12953.922406542462 L/KgOC
22:43 DEBUG   opendrift.models.chemicaldrift:872: KOC_SPM: 12953.922406542462 L/KgOC
22:43 DEBUG   opendrift.models.chemicaldrift:873: KOC_DOM: 3004.29439651874 L/KgOC
22:43 DEBUG   opendrift.models.chemicaldrift:885: Kd_sed: 647.6961203271231 L/Kg
22:43 DEBUG   opendrift.models.chemicaldrift:886: Kd_SPM: 647.6961203271231 L/Kg
22:43 DEBUG   opendrift.models.chemicaldrift:887: Kd_DOM: 1580.2588525688573 L/Kg
22:43 DEBUG   opendrift.models.chemicaldrift:1104: nspecies: 5
22:43 DEBUG   opendrift.models.chemicaldrift:1105: Transfer rates:
 [[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
00000000e+00]
 [4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
16887646e-11]
 [0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]]
22:43 DEBUG   opendrift.models.chemicaldrift:509: Initial partitioning:
22:43 DEBUG   opendrift.models.chemicaldrift:511:       449   0 LMM
22:43 DEBUG   opendrift.models.chemicaldrift:511:         0   1 Humic colloid
22:43 DEBUG   opendrift.models.chemicaldrift:511:        51   2 Particle reversible
22:43 DEBUG   opendrift.models.chemicaldrift:511:         0   3 Sediment reversible
22:43 DEBUG   opendrift.models.chemicaldrift:511:         0   4 Sediment slowly reversible
22:43 INFO    opendrift.models.basemodel.environment:206: Adding a dynamical landmask with max. priority based on assumed maximum speed of 2.0 m/s. Adding a customised landmask may be faster...
22:43 DEBUG   opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
22:47 DEBUG   opendrift.models.basemodel.environment:316: Added reader global_landmask
22:47 INFO    opendrift.models.basemodel.environment:233: Fallback values will be used for the following variables which have no readers:
22:47 INFO    opendrift.models.basemodel.environment:236:    ocean_vertical_diffusivity: 0.000100
22:47 INFO    opendrift.models.basemodel.environment:236:    spm: 1.000000
22:47 INFO    opendrift.models.basemodel.environment:236:    active_sediment_layer_thickness: 0.030000
22:47 INFO    opendrift.models.basemodel.environment:236:    doc: 0.000000
22:47 INFO    opendrift.models.basemodel.environment:236:    sea_water_ph_reported_on_total_scale: 8.100000
22:47 INFO    opendrift.models.basemodel.environment:236:    pH_sediment: 6.900000
22:47 DEBUG   opendrift:100: Changed mode from Mode.Config to Mode.Ready

Running model

o.run(steps=48*2, time_step=1800, time_step_output=1800)

22:47 DEBUG   opendrift:100: Changed mode from Mode.Ready to Mode.Run
22:47 DEBUG   opendrift:1763:
------------------------------------------------------
Software and hardware:
  OpenDrift version 1.13.0
  Platform: Linux, 5.15.0-1077-aws
56758880615234 GB memory
processors (x86_64)
  NumPy version 1.26.4
  SciPy version 1.15.2
  Matplotlib version 3.9.1
  NetCDF4 version 1.6.1
  Xarray version 2025.1.2
  ADIOS (adios_db) version 1.2.5
  Copernicusmarine version 2.0.1
  Python version 3.11.6 | packaged by conda-forge | (main, Oct  3 2023, 10:40:35) [GCC 12.3.0]
------------------------------------------------------

22:47 DEBUG   opendrift:1777: No output file is specified, neglecting export_buffer_length
22:47 DEBUG   opendrift:1895: Finalizing environment and preparing readers for simulation coverage ([4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]) and time (2025-03-03 14:22:43.574110 to 2025-03-05 14:22:43.574110)
22:47 DEBUG   opendrift.models.basemodel.environment:168:    Preparing https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]
22:47 DEBUG   opendrift.readers.basereader.structured:153: Clearing cache for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be before starting new simulation
22:47 DEBUG   opendrift.readers.basereader.variables:612: Setting buffer size 11 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 2 m/s and time span of 1:00:00
22:47 DEBUG   opendrift.readers.basereader.variables:553: Nothing more to prepare for https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
22:47 DEBUG   opendrift.models.basemodel.environment:168:    Preparing constant_reader for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]
22:47 DEBUG   opendrift.readers.basereader.variables:553: Nothing more to prepare for constant_reader
22:47 DEBUG   opendrift.models.basemodel.environment:168:    Preparing global_landmask for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]
22:47 DEBUG   opendrift.readers.basereader.variables:553: Nothing more to prepare for global_landmask
22:47 DEBUG   opendrift:1982: Initial self.result, size Frozen({'trajectory': 500, 'time': 97})
22:47 INFO    opendrift:919: Using existing reader for land_binary_mask
22:47 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:47 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
22:47 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:47 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
22:47 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:47 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:47 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
22:47 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:47 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
22:47 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:47 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:47 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
22:47 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
22:47 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
22:47 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
22:47 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
22:47 INFO    opendrift:930: All points are in ocean
22:47 INFO    opendrift.models.chemicaldrift:352: Number of species: 5
22:47 INFO    opendrift.models.chemicaldrift:354:   0 LMM
22:47 INFO    opendrift.models.chemicaldrift:354:   1 Humic colloid
22:47 INFO    opendrift.models.chemicaldrift:354:   2 Particle reversible
22:47 INFO    opendrift.models.chemicaldrift:354:   3 Sediment reversible
22:47 INFO    opendrift.models.chemicaldrift:354:   4 Sediment slowly reversible
22:47 INFO    opendrift.models.chemicaldrift:357: transfer setup: organics
22:47 INFO    opendrift.models.chemicaldrift:359: nspecies: 5
22:47 INFO    opendrift.models.chemicaldrift:360: Transfer rates:
 [[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
00000000e+00]
 [4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
16887646e-11]
 [0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]]
22:47 DEBUG   opendrift:874: to be seeded: 500, already seeded 0
22:47 DEBUG   opendrift:892: Released 500 new elements.
22:47 WARNING opendrift:713: Seafloor check not being run because environment is missing. This will happen the first time the function is run but if it happens subsequently there is probably a problem.
22:47 DEBUG   opendrift:2055: ======================================================================
22:47 INFO    opendrift:2056: 2025-03-03 14:22:43.574110 - step 1 of 96 - 500 active elements (0 deactivated)
22:47 DEBUG   opendrift:2062: 0 elements scheduled.
22:47 DEBUG   opendrift:2064: ======================================================================
22:47 DEBUG   opendrift:2075:                57.546223 <- latitude  -> 57.64813
22:47 DEBUG   opendrift:2080:                10.507113 <- longitude -> 10.70608
22:47 DEBUG   opendrift:2085:                -9.98847   <- z ->   -0.046954762
22:47 DEBUG   opendrift:2086: ---------------------------------
22:47 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:47 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
22:47 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:47 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
22:47 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:47 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:47 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
22:47 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 14:00:00 (before)
                2025-03-03 15:00:00 (after)
22:50 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
22:50 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
22:50 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
22:50 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
22:50 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
22:50 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
22:50 DEBUG   opendrift.readers.basereader.structured:292: Fetched env-block (size 37x35x7) for time before (2025-03-03 14:00:00)
22:52 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
22:52 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
22:52 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
22:52 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
22:52 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
22:52 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
22:52 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 37x35x7) for time after (2025-03-03 15:00:00)
22:52 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 14:00:00) in space  (linearNDFast)
22:52 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:52 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 15:00:00) in space  (linearNDFast)
22:52 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:52 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 14:00:00, weight 0.62) and
                      after (2025-03-03 15:00:00, weight 0.38) in time
22:52 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
22:52 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4929004930107 and -59.29392585710053 degrees.
22:52 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4929004930107 and -59.29392585710053 degrees.
22:52 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:52 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
22:52 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
22:52 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
22:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:52 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:52 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:52 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
22:52 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
22:52 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
22:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:52 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
22:52 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:52 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:52 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
22:52 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
22:52 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
22:52 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
22:52 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
22:52 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
22:52 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.198344 (min) 0.312558 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.147485 (min) 0.329667 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.281427 (min) -0.219735 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.67121 (min) 11.5459 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.92277 (min) 3.69023 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 9.53077 (min) 23.882 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 4.71639 (min) 7.52011 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 25.6229 (min) 33.6661 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: 3.85501e-05 (min) 0.000214484 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
22:52 DEBUG   opendrift:694: No elements hit coastline.
22:52 DEBUG   opendrift:733: No elements hit seafloor.
22:52 DEBUG   opendrift:1695: No elements to deactivate
22:52 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
22:52 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
22:52 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
22:52 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 1
22:52 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2]
22:52 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0]
22:52 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[0. 0. 0. 0. 0.]
 [0. 0. 0. 0. 0.]
 [1. 0. 0. 0. 0.]
 [0. 0. 0. 0. 0.]
 [0. 0. 0. 0. 0.]]
22:52 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
22:52 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:52 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
22:52 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
22:52 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.10259942350037578
22:52 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
22:52 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
22:52 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
22:52 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 59 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 63 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 64 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
22:52 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
22:52 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
22:52 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
22:52 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:52 INFO    opendrift.models.chemicaldrift:1861: partitioning: [450, 0, 50, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
22:52 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
22:52 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
22:52 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
22:52 DEBUG   opendrift:733: No elements hit seafloor.
22:52 DEBUG   opendrift:2055: ======================================================================
22:52 INFO    opendrift:2056: 2025-03-03 14:52:43.574110 - step 2 of 96 - 500 active elements (0 deactivated)
22:52 DEBUG   opendrift:2062: 0 elements scheduled.
22:52 DEBUG   opendrift:2064: ======================================================================
22:52 DEBUG   opendrift:2075:                57.54921602437821 <- latitude  -> 57.65278488782377
22:52 DEBUG   opendrift:2080:                10.509698686543112 <- longitude -> 10.709916409270948
22:52 DEBUG   opendrift:2085:                -19.860134968348905   <- z ->   0.0
22:52 DEBUG   opendrift:2086: ---------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
22:52 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
22:52 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
22:52 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 14:00:00 (before)
                2025-03-03 15:00:00 (after)
22:52 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 14:00:00) in space  (linearNDFast)
22:52 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:52 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 15:00:00) in space  (linearNDFast)
22:52 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:52 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 14:00:00, weight 0.12) and
                      after (2025-03-03 15:00:00, weight 0.88) in time
22:52 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
22:52 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.490312403943356 and -59.29009465868821 degrees.
22:52 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.490312403943356 and -59.29009465868821 degrees.
22:52 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:52 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
22:52 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
22:52 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
22:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:52 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:52 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:52 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
22:52 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
22:52 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
22:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:52 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
22:52 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:52 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:52 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
22:52 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
22:52 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
22:52 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
22:52 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
22:52 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
22:52 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.24154 (min) 0.320824 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.102761 (min) 0.29473 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.206986 (min) -0.148198 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.45029 (min) 11.5261 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.99344 (min) 3.53328 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 9.55905 (min) 23.8735 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 4.79913 (min) 7.6 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 26.1414 (min) 33.9143 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: 4.18637e-05 (min) 0.000217661 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
22:52 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
22:52 DEBUG   opendrift:694: No elements hit coastline.
22:52 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:52 DEBUG   opendrift:1695: No elements to deactivate
22:52 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
22:52 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
22:52 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
22:52 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 22
22:52 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0]
22:52 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 0 3 3 3 3 3 3 3 3 3]
22:52 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[ 0.  0.  0. 21.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 2.  0.  0.  4.  0.]
 [ 0.  0.  4.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
22:52 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
22:52 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:52 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
22:52 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
22:52 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.10254259725374425
22:52 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
22:52 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
22:52 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
22:52 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
22:52 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:52 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:52 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 21
22:52 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
22:52 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 21 elements
22:52 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:52 INFO    opendrift.models.chemicaldrift:1861: partitioning: [430, 0, 70, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
22:52 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
22:52 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
22:52 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
22:52 DEBUG   opendrift:733: No elements hit seafloor.
22:52 DEBUG   opendrift:2055: ======================================================================
22:52 INFO    opendrift:2056: 2025-03-03 15:22:43.574110 - step 3 of 96 - 500 active elements (0 deactivated)
22:52 DEBUG   opendrift:2062: 0 elements scheduled.
22:52 DEBUG   opendrift:2064: ======================================================================
22:52 DEBUG   opendrift:2075:                57.55275803029653 <- latitude  -> 57.6575479758438
22:52 DEBUG   opendrift:2080:                10.513226786595565 <- longitude -> 10.706559263957425
22:52 DEBUG   opendrift:2085:                -22.158370691453307   <- z ->   -0.00016882868718559596
22:52 DEBUG   opendrift:2086: ---------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
22:52 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
22:52 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:52 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:52 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
22:52 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 15:00:00 (before)
                2025-03-03 16:00:00 (after)
22:54 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
22:54 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
22:54 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
22:54 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
22:54 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
22:54 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
22:54 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 38x34x7) for time after (2025-03-03 16:00:00)
22:54 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 15:00:00) in space  (linearNDFast)
22:54 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:54 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 16:00:00) in space  (linearNDFast)
22:54 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:54 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 15:00:00, weight 0.62) and
                      after (2025-03-03 16:00:00, weight 0.38) in time
22:54 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
22:54 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.48678429565324 and -59.29345179522678 degrees.
22:54 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.48678429565324 and -59.29345179522678 degrees.
22:54 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:54 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
22:54 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
22:54 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:54 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
22:54 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:54 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:54 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:54 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
22:54 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
22:54 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:54 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
22:54 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:54 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
22:54 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:54 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:54 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
22:54 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
22:54 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
22:54 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
22:54 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
22:54 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
22:54 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.224625 (min) 0.323276 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.080474 (min) 0.263544 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.133327 (min) -0.0766129 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.75367 (min) 11.8777 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.14876 (min) 3.50569 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 9.63577 (min) 23.544 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 4.86637 (min) 7.6 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 26.2511 (min) 33.9155 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: 3.99993e-05 (min) 0.000218548 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
22:54 DEBUG   opendrift:694: No elements hit coastline.
22:54 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
22:54 DEBUG   opendrift:1695: No elements to deactivate
22:54 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
22:54 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
22:54 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
22:54 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 27
22:54 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
22:54 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
22:54 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[ 0.  0.  0. 48.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 2.  0.  0.  4.  0.]
 [ 0.  0. 25.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
22:54 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
22:54 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:54 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
22:54 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
22:54 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.10960956379510853
22:54 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
22:54 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
22:54 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
22:54 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 58 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
22:54 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 24
22:54 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
22:54 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 24 elements
22:54 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:54 INFO    opendrift.models.chemicaldrift:1861: partitioning: [403, 0, 91, 6, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
22:54 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
22:54 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
22:54 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
22:54 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
22:54 DEBUG   opendrift:2055: ======================================================================
22:54 INFO    opendrift:2056: 2025-03-03 15:52:43.574110 - step 4 of 96 - 500 active elements (0 deactivated)
22:54 DEBUG   opendrift:2062: 0 elements scheduled.
22:54 DEBUG   opendrift:2064: ======================================================================
22:54 DEBUG   opendrift:2075:                57.556889077590114 <- latitude  -> 57.66106039821706
22:54 DEBUG   opendrift:2080:                10.513952537379426 <- longitude -> 10.703606033471047
22:54 DEBUG   opendrift:2085:                -21.839143753581375   <- z ->   0.0
22:54 DEBUG   opendrift:2086: ---------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
22:54 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
22:54 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:54 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
22:54 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 15:00:00 (before)
                2025-03-03 16:00:00 (after)
22:54 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 15:00:00) in space  (linearNDFast)
22:54 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:54 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 16:00:00) in space  (linearNDFast)
22:54 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:54 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 15:00:00, weight 0.12) and
                      after (2025-03-03 16:00:00, weight 0.88) in time
22:54 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
22:54 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.486058545937595 and -59.296405024983 degrees.
22:54 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.486058545937595 and -59.296405024983 degrees.
22:54 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:54 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
22:54 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
22:54 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:54 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
22:54 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:54 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:54 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:54 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
22:54 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
22:54 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:54 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
22:54 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:54 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
22:54 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:54 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:54 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
22:54 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
22:54 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
22:54 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
22:54 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
22:54 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
22:54 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
22:54 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.211518 (min) 0.313381 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0667731 (min) 0.24387 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0603753 (min) -0.00469352 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.1943 (min) 12.3863 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.11329 (min) 3.59727 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 9.80832 (min) 23.2074 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 4.80591 (min) 7.59596 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 25.9373 (min) 33.9149 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: 3.52043e-05 (min) 0.000217461 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
22:54 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
22:54 DEBUG   opendrift:694: No elements hit coastline.
22:54 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
22:54 DEBUG   opendrift:1695: No elements to deactivate
22:54 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
22:54 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
22:54 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
22:54 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 14
22:54 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 2 0 0 0 0 0 0 0 0]
22:54 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 0 3 3 3 3 3 3 3 3]
22:54 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[ 0.  0.  0. 61.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 3.  0.  0.  7.  0.]
 [ 0.  0. 49.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
22:54 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
22:54 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:54 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
22:54 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
22:54 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12022010718562909
22:54 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
22:54 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
22:54 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
22:54 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 59 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 57 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
22:54 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
22:54 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
22:54 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
22:55 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
22:55 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:55 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
22:55 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
22:55 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
22:55 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
22:55 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
22:55 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
22:55 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
22:55 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
22:55 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12
22:55 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
22:55 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements
22:55 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:55 INFO    opendrift.models.chemicaldrift:1861: partitioning: [391, 0, 97, 12, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
22:55 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
22:55 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
22:55 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
22:55 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
22:55 DEBUG   opendrift:2055: ======================================================================
22:55 INFO    opendrift:2056: 2025-03-03 16:22:43.574110 - step 5 of 96 - 500 active elements (0 deactivated)
22:55 DEBUG   opendrift:2062: 0 elements scheduled.
22:55 DEBUG   opendrift:2064: ======================================================================
22:55 DEBUG   opendrift:2075:                57.558959826677 <- latitude  -> 57.664156054709885
22:55 DEBUG   opendrift:2080:                10.515660983630923 <- longitude -> 10.707720884820352
22:55 DEBUG   opendrift:2085:                -22.613718032836914   <- z ->   0.0
22:55 DEBUG   opendrift:2086: ---------------------------------
22:55 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:55 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
22:55 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:55 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
22:55 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:55 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:55 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
22:55 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 16:00:00 (before)
                2025-03-03 17:00:00 (after)
22:56 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
22:56 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
22:56 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
22:56 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
22:56 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
22:56 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
22:56 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 39x34x7) for time after (2025-03-03 17:00:00)
22:56 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 16:00:00) in space  (linearNDFast)
22:56 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:56 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 17:00:00) in space  (linearNDFast)
22:56 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:56 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 16:00:00, weight 0.62) and
                      after (2025-03-03 17:00:00, weight 0.38) in time
22:56 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
22:56 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.484350101028426 and -59.292290166656684 degrees.
22:56 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.484350101028426 and -59.292290166656684 degrees.
22:56 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:56 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:56 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
22:56 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:56 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
22:56 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:56 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:56 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
22:56 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:56 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:56 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:56 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:56 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
22:56 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:56 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
22:56 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:56 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:56 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
22:56 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:56 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
22:56 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:56 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:56 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
22:56 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
22:56 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
22:56 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
22:56 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
22:56 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
22:56 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
22:56 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.218467 (min) 0.345519 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0512239 (min) 0.230559 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.01034 (min) 0.046428 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.6851 (min) 12.753 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.13911 (min) 3.43453 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 9.93206 (min) 23.2717 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 4.82582 (min) 7.58843 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 26.047 (min) 33.9119 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: 2.5974e-05 (min) 0.000215757 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
22:56 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
22:56 DEBUG   opendrift:694: No elements hit coastline.
22:56 DEBUG   opendrift:733: No elements hit seafloor.
22:56 DEBUG   opendrift:1695: No elements to deactivate
22:56 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
22:56 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
22:56 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
22:56 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 20
22:56 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
22:56 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
22:56 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[ 0.  0.  0. 80.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 4.  0.  0. 12.  0.]
 [ 0.  0. 61.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
22:56 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
22:56 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:56 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
22:56 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
22:56 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12592329323424387
22:56 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
22:56 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
22:56 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
22:56 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
22:56 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:56 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:56 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
22:56 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:56 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 55 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:57 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 10
22:57 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
22:57 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements
22:57 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:57 INFO    opendrift.models.chemicaldrift:1861: partitioning: [373, 0, 104, 23, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
22:57 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
22:57 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
22:57 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
22:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:57 DEBUG   opendrift:2055: ======================================================================
22:57 INFO    opendrift:2056: 2025-03-03 16:52:43.574110 - step 6 of 96 - 500 active elements (0 deactivated)
22:57 DEBUG   opendrift:2062: 0 elements scheduled.
22:57 DEBUG   opendrift:2064: ======================================================================
22:57 DEBUG   opendrift:2075:                57.560820625700636 <- latitude  -> 57.66717196114479
22:57 DEBUG   opendrift:2080:                10.518911003999548 <- longitude -> 10.705562088328495
22:57 DEBUG   opendrift:2085:                -22.613718032836914   <- z ->   0.0
22:57 DEBUG   opendrift:2086: ---------------------------------
22:57 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:57 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
22:57 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:57 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
22:57 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:57 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
22:57 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 16:00:00 (before)
                2025-03-03 17:00:00 (after)
22:57 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 16:00:00) in space  (linearNDFast)
22:57 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:57 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 17:00:00) in space  (linearNDFast)
22:57 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:57 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 16:00:00, weight 0.12) and
                      after (2025-03-03 17:00:00, weight 0.88) in time
22:57 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
22:57 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.48110007918218 and -59.294448969632796 degrees.
22:57 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.48110007918218 and -59.294448969632796 degrees.
22:57 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:57 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:57 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
22:57 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:57 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
22:57 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:57 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
22:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:57 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:57 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:57 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:57 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
22:57 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:57 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
22:57 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:57 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
22:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:57 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
22:57 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:57 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:57 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
22:57 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
22:57 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
22:57 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
22:57 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
22:57 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
22:57 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
22:57 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.224265 (min) 0.349657 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0424425 (min) 0.27252 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.0322953 (min) 0.089514 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 11.286 (min) 13.0871 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.85808 (min) 3.26672 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 10.0455 (min) 23.2321 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 4.85775 (min) 7.58391 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 26.0948 (min) 33.9186 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: 1.43919e-05 (min) 0.000219756 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
22:57 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
22:57 DEBUG   opendrift:694: No elements hit coastline.
22:57 DEBUG   opendrift:733: No elements hit seafloor.
22:57 DEBUG   opendrift:1695: No elements to deactivate
22:57 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
22:57 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
22:57 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
22:57 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 23
22:57 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
22:57 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
22:57 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 103.   0.]
 [  0.   0.   0.   0.   0.]
 [  4.   0.   0.  13.   0.]
 [  0.   0.  70.   0.   0.]
 [  0.   0.   0.   0.   0.]]
22:57 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
22:57 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:57 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
22:57 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
22:57 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.13034259304714638
22:57 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
22:57 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
22:57 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
22:57 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 57 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:57 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
22:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:57 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 20
22:57 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
22:57 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 19 elements
22:57 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:57 INFO    opendrift.models.chemicaldrift:1861: partitioning: [350, 0, 123, 27, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
22:57 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
22:57 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
22:57 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
22:57 DEBUG   opendrift:733: No elements hit seafloor.
22:57 DEBUG   opendrift:2055: ======================================================================
22:57 INFO    opendrift:2056: 2025-03-03 17:22:43.574110 - step 7 of 96 - 500 active elements (0 deactivated)
22:57 DEBUG   opendrift:2062: 0 elements scheduled.
22:57 DEBUG   opendrift:2064: ======================================================================
22:57 DEBUG   opendrift:2075:                57.56243824918588 <- latitude  -> 57.67006780702504
22:57 DEBUG   opendrift:2080:                10.519148440462608 <- longitude -> 10.704702319015984
22:57 DEBUG   opendrift:2085:                -22.613718032836914   <- z ->   0.0
22:57 DEBUG   opendrift:2086: ---------------------------------
22:57 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:57 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
22:57 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:57 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
22:57 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:57 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
22:57 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 17:00:00 (before)
                2025-03-03 18:00:00 (after)
22:59 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
22:59 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
22:59 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
22:59 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
22:59 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
22:59 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
22:59 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 39x34x7) for time after (2025-03-03 18:00:00)
22:59 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 17:00:00) in space  (linearNDFast)
22:59 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:59 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 18:00:00) in space  (linearNDFast)
22:59 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:59 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 17:00:00, weight 0.62) and
                      after (2025-03-03 18:00:00, weight 0.38) in time
22:59 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
22:59 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.480862659649674 and -59.29530874313707 degrees.
22:59 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.480862659649674 and -59.29530874313707 degrees.
22:59 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:59 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
22:59 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
22:59 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:59 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
22:59 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:59 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:59 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:59 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
22:59 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
22:59 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:59 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
22:59 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:59 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
22:59 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:59 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:59 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
22:59 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
22:59 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
22:59 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
22:59 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
22:59 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
22:59 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.203263 (min) 0.323948 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.000634854 (min) 0.241667 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.0452096 (min) 0.103658 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 11.7091 (min) 13.5824 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.81455 (min) 3.25961 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 10.2096 (min) 23.4635 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 4.8778 (min) 7.58901 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 26.2347 (min) 33.9132 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: 1.13418e-06 (min) 0.00022256 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
22:59 DEBUG   opendrift:694: No elements hit coastline.
22:59 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:59 DEBUG   opendrift:1695: No elements to deactivate
22:59 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
22:59 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
22:59 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
22:59 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 16
22:59 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
22:59 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
22:59 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 118.   0.]
 [  0.   0.   0.   0.   0.]
 [  5.   0.   0.  13.   0.]
 [  0.   0.  89.   0.   0.]
 [  0.   0.   0.   0.   0.]]
22:59 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
22:59 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:59 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
22:59 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
22:59 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.13987851454979497
22:59 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
22:59 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
22:59 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
22:59 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 58 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:59 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:59 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:59 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:59 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:59 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:59 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:59 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:59 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:59 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:59 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:59 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:59 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:59 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 26
22:59 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
22:59 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 23 elements
22:59 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:59 INFO    opendrift.models.chemicaldrift:1861: partitioning: [336, 0, 145, 19, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
22:59 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
22:59 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
22:59 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
22:59 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:59 DEBUG   opendrift:2055: ======================================================================
22:59 INFO    opendrift:2056: 2025-03-03 17:52:43.574110 - step 8 of 96 - 500 active elements (0 deactivated)
22:59 DEBUG   opendrift:2062: 0 elements scheduled.
22:59 DEBUG   opendrift:2064: ======================================================================
22:59 DEBUG   opendrift:2075:                57.564452634730834 <- latitude  -> 57.67308933988692
22:59 DEBUG   opendrift:2080:                10.520638140192638 <- longitude -> 10.712059086513095
22:59 DEBUG   opendrift:2085:                -22.613718032836914   <- z ->   0.0
22:59 DEBUG   opendrift:2086: ---------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
22:59 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
22:59 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:59 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
22:59 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 17:00:00 (before)
                2025-03-03 18:00:00 (after)
22:59 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 17:00:00) in space  (linearNDFast)
22:59 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:59 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 18:00:00) in space  (linearNDFast)
22:59 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
22:59 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 17:00:00, weight 0.12) and
                      after (2025-03-03 18:00:00, weight 0.88) in time
22:59 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
22:59 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.47937295144182 and -59.287951978719526 degrees.
22:59 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.47937295144182 and -59.287951978719526 degrees.
22:59 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:59 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
22:59 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
22:59 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:59 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
22:59 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:59 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:59 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:59 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
22:59 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
22:59 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:59 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
22:59 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
22:59 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
22:59 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
22:59 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
22:59 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
22:59 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
22:59 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
22:59 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
22:59 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
22:59 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
22:59 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.20228 (min) 0.337798 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0195498 (min) 0.305552 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.0502607 (min) 0.110726 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 12.0122 (min) 14.1282 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.52472 (min) 3.30792 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 10.1621 (min) 23.2724 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 4.98495 (min) 7.58 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 26.7561 (min) 33.9196 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -6.00631e-06 (min) 0.00023502 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
22:59 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
22:59 DEBUG   opendrift:694: No elements hit coastline.
22:59 DEBUG   opendrift:733: No elements hit seafloor.
22:59 DEBUG   opendrift:1695: No elements to deactivate
22:59 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
22:59 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
22:59 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
22:59 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 15
22:59 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 0 0 0 0 0 0 0 0 2 0 0]
22:59 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3 3 3 3 3 3 3 3 0 3 3]
22:59 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 131.   0.]
 [  0.   0.   0.   0.   0.]
 [  7.   0.   0.  13.   0.]
 [  0.   0. 112.   0.   0.]
 [  0.   0.   0.   0.   0.]]
22:59 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
22:59 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:59 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
22:59 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
22:59 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.15132021946737048
22:59 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
22:59 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
22:59 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
22:59 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 55 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:59 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:59 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 58 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:59 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:59 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
22:59 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
22:59 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:59 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:59 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:59 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:59 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:59 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:59 DEBUG   opendrift.models.oceandrift:516: 55 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:59 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:59 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
22:59 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
22:59 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
22:59 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 28
22:59 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
22:59 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 25 elements
22:59 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
22:59 INFO    opendrift.models.chemicaldrift:1861: partitioning: [325, 0, 168, 7, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
22:59 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
22:59 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
22:59 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
22:59 DEBUG   opendrift:733: No elements hit seafloor.
22:59 DEBUG   opendrift:2055: ======================================================================
22:59 INFO    opendrift:2056: 2025-03-03 18:22:43.574110 - step 9 of 96 - 500 active elements (0 deactivated)
22:59 DEBUG   opendrift:2062: 0 elements scheduled.
22:59 DEBUG   opendrift:2064: ======================================================================
22:59 DEBUG   opendrift:2075:                57.568217448112 <- latitude  -> 57.675998122577084
22:59 DEBUG   opendrift:2080:                10.519855151127016 <- longitude -> 10.710904087278609
22:59 DEBUG   opendrift:2085:                -22.613718032836914   <- z ->   0.0
22:59 DEBUG   opendrift:2086: ---------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
22:59 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
22:59 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
22:59 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
22:59 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
22:59 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 18:00:00 (before)
                2025-03-03 19:00:00 (after)
23:01 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:01 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:01 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:01 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:01 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:01 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:01 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 39x34x7) for time after (2025-03-03 19:00:00)
23:01 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 18:00:00) in space  (linearNDFast)
23:01 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:01 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 19:00:00) in space  (linearNDFast)
23:01 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:01 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 18:00:00, weight 0.62) and
                      after (2025-03-03 19:00:00, weight 0.38) in time
23:01 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:01 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4801559475991 and -59.28910696753357 degrees.
23:01 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4801559475991 and -59.28910696753357 degrees.
23:01 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:01 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:01 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:01 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:01 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:01 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:01 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:01 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:01 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:01 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:01 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:01 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:01 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:01 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:01 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:01 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:01 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:01 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:01 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:01 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:01 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:01 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:01 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.210961 (min) 0.348513 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.041659 (min) 0.271922 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.0345231 (min) 0.0930919 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 11.4119 (min) 13.6323 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.65123 (min) 3.57551 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 10.2566 (min) 23.0563 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.0014 (min) 7.58044 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 26.7426 (min) 33.922 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -1.08259e-05 (min) 0.000223694 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:01 DEBUG   opendrift:694: No elements hit coastline.
23:01 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:01 DEBUG   opendrift:1695: No elements to deactivate
23:01 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:01 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:01 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:01 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 16
23:01 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
23:01 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
23:01 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 147.   0.]
 [  0.   0.   0.   0.   0.]
 [  7.   0.   0.  13.   0.]
 [  0.   0. 137.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:01 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:01 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:01 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:01 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:01 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.14168907446048815
23:01 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:01 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:01 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:01 DEBUG   opendrift.models.oceandrift:516: 59 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 55 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 57 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 57 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 65 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 57 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 55 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:01 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 24
23:01 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:01 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 21 elements
23:01 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:01 INFO    opendrift.models.chemicaldrift:1861: partitioning: [309, 0, 189, 2, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:01 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:01 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:01 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:01 DEBUG   opendrift:733: No elements hit seafloor.
23:01 DEBUG   opendrift:2055: ======================================================================
23:01 INFO    opendrift:2056: 2025-03-03 18:52:43.574110 - step 10 of 96 - 500 active elements (0 deactivated)
23:01 DEBUG   opendrift:2062: 0 elements scheduled.
23:01 DEBUG   opendrift:2064: ======================================================================
23:01 DEBUG   opendrift:2075:                57.569667011693774 <- latitude  -> 57.679012242134235
23:01 DEBUG   opendrift:2080:                10.521727708414463 <- longitude -> 10.716367866156064
23:01 DEBUG   opendrift:2085:                -22.613718032836914   <- z ->   0.0
23:01 DEBUG   opendrift:2086: ---------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:01 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:01 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:01 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:01 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 18:00:00 (before)
                2025-03-03 19:00:00 (after)
23:01 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 18:00:00) in space  (linearNDFast)
23:01 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:01 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 19:00:00) in space  (linearNDFast)
23:01 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:01 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 18:00:00, weight 0.12) and
                      after (2025-03-03 19:00:00, weight 0.88) in time
23:01 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:01 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.478283378010076 and -59.283643185354144 degrees.
23:01 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.478283378010076 and -59.283643185354144 degrees.
23:01 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:01 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:01 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:01 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:01 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:01 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:01 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:01 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:01 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:01 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:01 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:01 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:01 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:01 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:01 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:01 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:01 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:01 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:01 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:01 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:01 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:01 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:01 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.204974 (min) 0.362323 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0358989 (min) 0.28713 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.0138813 (min) 0.0704321 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.4727 (min) 12.8366 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.90461 (min) 3.97866 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 10.3568 (min) 22.9713 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 4.93831 (min) 7.57887 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 26.4886 (min) 33.9097 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -1.43365e-05 (min) 0.000230079 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:01 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:01 DEBUG   opendrift:694: No elements hit coastline.
23:01 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:01 DEBUG   opendrift:1695: No elements to deactivate
23:01 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:01 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:01 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:01 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 20
23:01 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 0 0 2 0 2 0 0 0 0 0 0 0 2 0 0 0]
23:01 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3 3 0 3 0 3 3 3 3 3 3 3 0 3 3 3]
23:01 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 163.   0.]
 [  0.   0.   0.   0.   0.]
 [ 11.   0.   0.  13.   0.]
 [  0.   0. 158.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:01 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:01 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:01 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:01 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:01 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12667602917465162
23:01 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:01 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:01 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:01 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 58 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 73 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:01 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:01 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:01 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 20
23:01 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:01 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 17 elements
23:01 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:01 INFO    opendrift.models.chemicaldrift:1861: partitioning: [297, 0, 202, 1, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:01 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:01 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:01 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:01 DEBUG   opendrift:733: No elements hit seafloor.
23:01 DEBUG   opendrift:2055: ======================================================================
23:01 INFO    opendrift:2056: 2025-03-03 19:22:43.574110 - step 11 of 96 - 500 active elements (0 deactivated)
23:01 DEBUG   opendrift:2062: 0 elements scheduled.
23:01 DEBUG   opendrift:2064: ======================================================================
23:01 DEBUG   opendrift:2075:                57.57223386753622 <- latitude  -> 57.68228743921578
23:01 DEBUG   opendrift:2080:                10.522559242525553 <- longitude -> 10.714777519738472
23:01 DEBUG   opendrift:2085:                -22.295438084895967   <- z ->   0.0
23:01 DEBUG   opendrift:2086: ---------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:01 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:01 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:01 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:01 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:01 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 19:00:00 (before)
                2025-03-03 20:00:00 (after)
23:03 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:03 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:03 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:03 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:03 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:03 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:03 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 39x34x7) for time after (2025-03-03 20:00:00)
23:03 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 19:00:00) in space  (linearNDFast)
23:03 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:03 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 20:00:00) in space  (linearNDFast)
23:03 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:03 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 19:00:00, weight 0.62) and
                      after (2025-03-03 20:00:00, weight 0.38) in time
23:03 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:03 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.477451837628884 and -59.285233535439964 degrees.
23:03 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.477451837628884 and -59.285233535439964 degrees.
23:03 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:03 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:03 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:03 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:03 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:03 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:03 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:03 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:03 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:03 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:03 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:03 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:03 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:03 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:03 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:03 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:03 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:03 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:03 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:03 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:03 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:03 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:03 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:03 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:03 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:03 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:03 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:03 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:03 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:03 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.155521 (min) 0.366512 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0655448 (min) 0.303719 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0161437 (min) 0.0406697 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.89672 (min) 12.5626 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.89982 (min) 4.02557 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 10.2502 (min) 23.1005 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 4.9911 (min) 7.56667 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 26.7088 (min) 33.9052 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -2.4477e-05 (min) 0.000207276 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:03 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:03 DEBUG   opendrift:694: No elements hit coastline.
23:03 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:03 DEBUG   opendrift:1695: No elements to deactivate
23:03 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:03 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:03 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:03 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 15
23:03 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 0 0 0 0 0 0 0 0 2 0 0]
23:03 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3 3 3 3 3 3 3 3 0 3 3]
23:03 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 176.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  13.   0.]
 [  0.   0. 175.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:03 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:03 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:03 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:03 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:03 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12107875685609065
23:03 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:03 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:03 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:03 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 57 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:03 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:03 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:03 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:03 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 17
23:03 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:03 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 17 elements
23:03 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:03 INFO    opendrift.models.chemicaldrift:1861: partitioning: [286, 0, 214, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:03 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:03 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:03 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:03 DEBUG   opendrift:733: No elements hit seafloor.
23:03 DEBUG   opendrift:2055: ======================================================================
23:04 INFO    opendrift:2056: 2025-03-03 19:52:43.574110 - step 12 of 96 - 500 active elements (0 deactivated)
23:04 DEBUG   opendrift:2062: 0 elements scheduled.
23:04 DEBUG   opendrift:2064: ======================================================================
23:04 DEBUG   opendrift:2075:                57.57404648532151 <- latitude  -> 57.68525836208832
23:04 DEBUG   opendrift:2080:                10.518875859570384 <- longitude -> 10.717562094520199
23:04 DEBUG   opendrift:2085:                -21.732666132793046   <- z ->   0.0
23:04 DEBUG   opendrift:2086: ---------------------------------
23:04 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:04 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:04 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:04 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:04 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:04 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:04 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:04 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 19:00:00 (before)
                2025-03-03 20:00:00 (after)
23:04 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 19:00:00) in space  (linearNDFast)
23:04 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:04 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 20:00:00) in space  (linearNDFast)
23:04 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:04 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 19:00:00, weight 0.12) and
                      after (2025-03-03 20:00:00, weight 0.88) in time
23:04 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:04 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.48113522496734 and -59.28244896348026 degrees.
23:04 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.48113522496734 and -59.28244896348026 degrees.
23:04 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:04 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:04 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:04 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:04 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:04 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:04 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:04 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:04 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:04 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:04 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:04 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:04 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:04 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:04 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:04 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:04 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:04 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:04 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:04 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:04 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:04 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:04 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:04 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:04 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:04 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:04 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:04 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:04 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:04 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.140623 (min) 0.375649 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0698074 (min) 0.313252 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0485496 (min) 0.0102253 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.43112 (min) 12.4625 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.78366 (min) 4.01682 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 10.2679 (min) 23.1728 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 4.97211 (min) 7.55877 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 26.6133 (min) 33.9034 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -4.52011e-05 (min) 0.000192974 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:04 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:04 DEBUG   opendrift:694: No elements hit coastline.
23:04 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:04 DEBUG   opendrift:1695: No elements to deactivate
23:04 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:04 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:04 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:04 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 15
23:04 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
23:04 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
23:04 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 191.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  16.   0.]
 [  0.   0. 192.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:04 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:04 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:04 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:04 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:04 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.11827113921250161
23:04 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:04 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:04 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:04 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
23:04 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:04 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
23:04 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
23:04 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 31
23:04 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:04 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 31 elements
23:04 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:04 INFO    opendrift.models.chemicaldrift:1861: partitioning: [271, 0, 229, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:04 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:04 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:04 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:04 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:04 DEBUG   opendrift:2055: ======================================================================
23:04 INFO    opendrift:2056: 2025-03-03 20:22:43.574110 - step 13 of 96 - 500 active elements (0 deactivated)
23:04 DEBUG   opendrift:2062: 0 elements scheduled.
23:04 DEBUG   opendrift:2064: ======================================================================
23:04 DEBUG   opendrift:2075:                57.57588291916671 <- latitude  -> 57.68860190158993
23:04 DEBUG   opendrift:2080:                10.523754854866148 <- longitude -> 10.721054978974873
23:04 DEBUG   opendrift:2085:                -22.02772660668704   <- z ->   0.0
23:04 DEBUG   opendrift:2086: ---------------------------------
23:04 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:04 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:04 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:04 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:04 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:04 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:04 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:04 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 20:00:00 (before)
                2025-03-03 21:00:00 (after)
23:06 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:06 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:06 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:06 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:06 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:06 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:06 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 39x35x7) for time after (2025-03-03 21:00:00)
23:06 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 20:00:00) in space  (linearNDFast)
23:06 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:06 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 21:00:00) in space  (linearNDFast)
23:06 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:06 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 20:00:00, weight 0.62) and
                      after (2025-03-03 21:00:00, weight 0.38) in time
23:06 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:06 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4762562304074 and -59.27895606385739 degrees.
23:06 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4762562304074 and -59.27895606385739 degrees.
23:06 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:06 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:06 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:06 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:06 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:06 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:06 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:06 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:06 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:06 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:06 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:06 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:06 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:06 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:06 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:06 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:06 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:06 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:06 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:06 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:06 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:06 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:06 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.155298 (min) 0.381638 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0826505 (min) 0.326116 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0839958 (min) -0.0233028 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.3762 (min) 12.5703 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.85909 (min) 4.06184 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 10.3051 (min) 23.2934 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 4.97027 (min) 7.55217 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 26.619 (min) 33.8974 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -5.70469e-05 (min) 0.000184232 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:06 DEBUG   opendrift:694: No elements hit coastline.
23:06 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:06 DEBUG   opendrift:1695: No elements to deactivate
23:06 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:06 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:06 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:06 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 14
23:06 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 2 0 0 0 0 2 0 0 2 0 0]
23:06 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 0 3 3 3 3 0 3 3 0 3 3]
23:06 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 201.   0.]
 [  0.   0.   0.   0.   0.]
 [ 17.   0.   0.  32.   0.]
 [  0.   0. 223.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:06 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:06 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:06 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:06 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:06 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12063468176872104
23:06 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:06 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:06 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:06 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 58 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:06 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 23
23:06 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:06 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 23 elements
23:06 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:06 INFO    opendrift.models.chemicaldrift:1861: partitioning: [265, 0, 235, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:06 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:06 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:06 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:06 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:06 DEBUG   opendrift:2055: ======================================================================
23:06 INFO    opendrift:2056: 2025-03-03 20:52:43.574110 - step 14 of 96 - 500 active elements (0 deactivated)
23:06 DEBUG   opendrift:2062: 0 elements scheduled.
23:06 DEBUG   opendrift:2064: ======================================================================
23:06 DEBUG   opendrift:2075:                57.57802539469324 <- latitude  -> 57.691929624491365
23:06 DEBUG   opendrift:2080:                10.527130098980146 <- longitude -> 10.72061453888767
23:06 DEBUG   opendrift:2085:                -22.99608824622821   <- z ->   0.0
23:06 DEBUG   opendrift:2086: ---------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:06 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:06 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:06 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:06 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 20:00:00 (before)
                2025-03-03 21:00:00 (after)
23:06 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 20:00:00) in space  (linearNDFast)
23:06 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:06 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 21:00:00) in space  (linearNDFast)
23:06 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:06 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 20:00:00, weight 0.12) and
                      after (2025-03-03 21:00:00, weight 0.88) in time
23:06 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:06 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4728809822285 and -59.279396506005966 degrees.
23:06 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.4728809822285 and -59.279396506005966 degrees.
23:06 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:06 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:06 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:06 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:06 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:06 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:06 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:06 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:06 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:06 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:06 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:06 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:06 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:06 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:06 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:06 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:06 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:06 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:06 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:06 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:06 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:06 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:06 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0935822 (min) 0.390448 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.117066 (min) 0.350439 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.118423 (min) -0.0580513 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.45956 (min) 12.6901 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.9417 (min) 4.09873 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 10.3367 (min) 23.3875 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.10064 (min) 7.56075 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 27.205 (min) 33.9089 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -7.71174e-05 (min) 0.000178812 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:06 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:06 DEBUG   opendrift:694: No elements hit coastline.
23:06 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:06 DEBUG   opendrift:1695: No elements to deactivate
23:06 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:06 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:06 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:06 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 13
23:06 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 0 0 0 0 0 0 0 0 0]
23:06 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3 3 3 3 3 3 3 3 3]
23:06 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 213.   0.]
 [  0.   0.   0.   0.   0.]
 [ 18.   0.   0.  45.   0.]
 [  0.   0. 246.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:06 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:06 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:06 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:06 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:06 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12385756596510505
23:06 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:06 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:06 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:06 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
23:06 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:06 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
23:06 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
23:06 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 27
23:06 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:06 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 27 elements
23:06 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:06 INFO    opendrift.models.chemicaldrift:1861: partitioning: [254, 0, 246, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:06 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:06 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:06 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:06 DEBUG   opendrift:733: No elements hit seafloor.
23:06 DEBUG   opendrift:2055: ======================================================================
23:06 INFO    opendrift:2056: 2025-03-03 21:22:43.574110 - step 15 of 96 - 500 active elements (0 deactivated)
23:06 DEBUG   opendrift:2062: 0 elements scheduled.
23:06 DEBUG   opendrift:2064: ======================================================================
23:06 DEBUG   opendrift:2075:                57.58165570414712 <- latitude  -> 57.695412828265475
23:06 DEBUG   opendrift:2080:                10.525064468185787 <- longitude -> 10.720709287859588
23:06 DEBUG   opendrift:2085:                -21.645100058666046   <- z ->   0.0
23:06 DEBUG   opendrift:2086: ---------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:06 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:06 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:06 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:06 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:06 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 21:00:00 (before)
                2025-03-03 22:00:00 (after)
23:08 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:08 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:08 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:08 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:08 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:08 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:08 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 40x35x7) for time after (2025-03-03 22:00:00)
23:08 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 21:00:00) in space  (linearNDFast)
23:08 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:08 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 22:00:00) in space  (linearNDFast)
23:08 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:08 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 21:00:00, weight 0.62) and
                      after (2025-03-03 22:00:00, weight 0.38) in time
23:08 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:08 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.47494661047445 and -59.27930175484042 degrees.
23:08 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.47494661047445 and -59.27930175484042 degrees.
23:08 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:08 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:08 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:08 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:08 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:08 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:08 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:08 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:08 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:08 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:08 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:08 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:08 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:08 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:08 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:08 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:08 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:08 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:08 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.116895 (min) 0.387097 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.132216 (min) 0.349584 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.15575 (min) -0.0971207 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.41892 (min) 12.5984 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.16398 (min) 4.2716 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 10.5655 (min) 23.2014 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.20336 (min) 7.54286 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 27.5641 (min) 33.8811 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -9.37159e-05 (min) 0.000151625 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:08 DEBUG   opendrift:694: No elements hit coastline.
23:08 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:08 DEBUG   opendrift:1695: No elements to deactivate
23:08 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:08 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:08 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:08 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
23:08 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 0 0 0]
23:08 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 3 3 3]
23:08 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 220.   0.]
 [  0.   0.   0.   0.   0.]
 [ 19.   0.   0.  60.   0.]
 [  0.   0. 273.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:08 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:08 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:08 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:08 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:08 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12330098225275696
23:08 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:08 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:08 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:08 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 58 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:08 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 19
23:08 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:08 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 19 elements
23:08 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:08 INFO    opendrift.models.chemicaldrift:1861: partitioning: [248, 0, 252, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:08 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:08 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:08 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:08 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:08 DEBUG   opendrift:2055: ======================================================================
23:08 INFO    opendrift:2056: 2025-03-03 21:52:43.574110 - step 16 of 96 - 500 active elements (0 deactivated)
23:08 DEBUG   opendrift:2062: 0 elements scheduled.
23:08 DEBUG   opendrift:2064: ======================================================================
23:08 DEBUG   opendrift:2075:                57.58590482894251 <- latitude  -> 57.698773875558906
23:08 DEBUG   opendrift:2080:                10.530347194256592 <- longitude -> 10.721319049064743
23:08 DEBUG   opendrift:2085:                -21.84411594920617   <- z ->   -0.1255001786658404
23:08 DEBUG   opendrift:2086: ---------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:08 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:08 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:08 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 21:00:00 (before)
                2025-03-03 22:00:00 (after)
23:08 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 21:00:00) in space  (linearNDFast)
23:08 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:08 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 22:00:00) in space  (linearNDFast)
23:08 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:08 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 21:00:00, weight 0.12) and
                      after (2025-03-03 22:00:00, weight 0.88) in time
23:08 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:08 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.46966388634435 and -59.278691993689954 degrees.
23:08 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.46966388634435 and -59.278691993689954 degrees.
23:08 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:08 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:08 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:08 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:08 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:08 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:08 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:08 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:08 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:08 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:08 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:08 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:08 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:08 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:08 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:08 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:08 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:08 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:08 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.107172 (min) 0.396863 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.149652 (min) 0.341375 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.195893 (min) -0.137104 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.3279 (min) 12.4582 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.41324 (min) 4.48495 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 10.4087 (min) 23.0254 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.07118 (min) 7.55085 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 27.0425 (min) 33.8941 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -9.83439e-05 (min) 0.000146363 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:08 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:08 DEBUG   opendrift:694: No elements hit coastline.
23:08 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:08 DEBUG   opendrift:1695: No elements to deactivate
23:08 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:08 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:08 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:08 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 14
23:08 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 2 0 0 0 0 0 0 2 0 2 0]
23:08 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 0 3 3 3 3 3 3 0 3 0 3]
23:08 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 229.   0.]
 [  0.   0.   0.   0.   0.]
 [ 24.   0.   0.  72.   0.]
 [  0.   0. 292.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:08 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:08 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:08 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:08 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:08 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12187632960888785
23:08 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:08 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:08 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:08 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:08 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:08 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:08 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:08 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 25
23:08 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:08 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 25 elements
23:08 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:08 INFO    opendrift.models.chemicaldrift:1861: partitioning: [244, 0, 256, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:08 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:08 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:08 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:08 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:08 DEBUG   opendrift:2055: ======================================================================
23:08 INFO    opendrift:2056: 2025-03-03 22:22:43.574110 - step 17 of 96 - 500 active elements (0 deactivated)
23:08 DEBUG   opendrift:2062: 0 elements scheduled.
23:08 DEBUG   opendrift:2064: ======================================================================
23:08 DEBUG   opendrift:2075:                57.59018976060227 <- latitude  -> 57.702784429444606
23:08 DEBUG   opendrift:2080:                10.53140208352601 <- longitude -> 10.72266648823921
23:08 DEBUG   opendrift:2085:                -22.753449876123106   <- z ->   -0.1013908390450311
23:08 DEBUG   opendrift:2086: ---------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:08 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:08 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:08 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:08 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:08 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 22:00:00 (before)
                2025-03-03 23:00:00 (after)
23:10 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:10 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:10 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:10 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:10 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:10 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:10 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 40x34x7) for time after (2025-03-03 23:00:00)
23:10 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 22:00:00) in space  (linearNDFast)
23:10 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:10 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 23:00:00) in space  (linearNDFast)
23:10 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:10 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 22:00:00, weight 0.62) and
                      after (2025-03-03 23:00:00, weight 0.38) in time
23:10 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:10 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.46860900768204 and -59.2773445556821 degrees.
23:10 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.46860900768204 and -59.2773445556821 degrees.
23:10 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:10 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:10 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:10 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:10 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:10 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:10 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:10 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:10 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:10 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:10 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:10 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:10 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:10 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:10 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:10 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:10 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:10 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:10 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:10 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:10 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0975483 (min) 0.401165 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.14428 (min) 0.340567 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.237631 (min) -0.178255 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.35419 (min) 12.631 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.22818 (min) 4.33709 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 10.5568 (min) 22.8567 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.08015 (min) 7.5475 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 27.0673 (min) 33.8897 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000115025 (min) 0.00012077 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:10 DEBUG   opendrift:694: No elements hit coastline.
23:10 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:10 DEBUG   opendrift:1695: No elements to deactivate
23:10 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:10 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:10 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:10 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 18
23:10 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
23:10 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
23:10 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 245.   0.]
 [  0.   0.   0.   0.   0.]
 [ 26.   0.   0.  88.   0.]
 [  0.   0. 317.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:10 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:10 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:10 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.1245912515559338
23:10 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:10 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:10 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:10 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 58 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 58 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 57 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 58 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
23:10 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 27
23:10 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 27 elements
23:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:10 INFO    opendrift.models.chemicaldrift:1861: partitioning: [230, 0, 270, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:10 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:10 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:10 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:10 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:10 DEBUG   opendrift:2055: ======================================================================
23:10 INFO    opendrift:2056: 2025-03-03 22:52:43.574110 - step 18 of 96 - 500 active elements (0 deactivated)
23:10 DEBUG   opendrift:2062: 0 elements scheduled.
23:10 DEBUG   opendrift:2064: ======================================================================
23:10 DEBUG   opendrift:2075:                57.594276710697635 <- latitude  -> 57.706089109475876
23:10 DEBUG   opendrift:2080:                10.537397741901591 <- longitude -> 10.730104979225533
23:10 DEBUG   opendrift:2085:                -21.02344543107471   <- z ->   -0.009166992070395938
23:10 DEBUG   opendrift:2086: ---------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:10 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:10 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:10 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:10 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 22:00:00 (before)
                2025-03-03 23:00:00 (after)
23:10 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 22:00:00) in space  (linearNDFast)
23:10 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:10 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-03 23:00:00) in space  (linearNDFast)
23:10 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:10 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 22:00:00, weight 0.12) and
                      after (2025-03-03 23:00:00, weight 0.88) in time
23:10 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:10 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.46261333748202 and -59.26990606518557 degrees.
23:10 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.46261333748202 and -59.26990606518557 degrees.
23:10 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:10 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:10 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:10 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:10 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:10 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:10 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:10 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:10 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:10 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:10 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:10 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:10 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:10 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:10 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:10 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:10 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:10 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:10 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:10 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:10 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.094757 (min) 0.39847 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.158459 (min) 0.335511 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.28022 (min) -0.220012 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.3005 (min) 12.8956 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.90426 (min) 4.10578 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 10.6909 (min) 22.9648 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.18418 (min) 7.54101 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 27.5029 (min) 33.8823 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000141606 (min) 0.0001256 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:10 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:10 DEBUG   opendrift:694: No elements hit coastline.
23:10 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:10 DEBUG   opendrift:1695: No elements to deactivate
23:10 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:10 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:10 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:10 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 12
23:10 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0]
23:10 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3]
23:10 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 257.   0.]
 [  0.   0.   0.   0.   0.]
 [ 26.   0.   0.  99.   0.]
 [  0.   0. 344.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:10 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:10 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:10 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12859442338437024
23:10 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:10 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:10 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:10 DEBUG   opendrift.models.oceandrift:516: 60 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
23:10 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
23:10 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
23:10 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
23:10 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 27
23:10 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 27 elements
23:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:10 INFO    opendrift.models.chemicaldrift:1861: partitioning: [218, 0, 282, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:10 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:10 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:10 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:10 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:10 DEBUG   opendrift:2055: ======================================================================
23:10 INFO    opendrift:2056: 2025-03-03 23:22:43.574110 - step 19 of 96 - 500 active elements (0 deactivated)
23:10 DEBUG   opendrift:2062: 0 elements scheduled.
23:10 DEBUG   opendrift:2064: ======================================================================
23:10 DEBUG   opendrift:2075:                57.598039642814065 <- latitude  -> 57.70961565244101
23:10 DEBUG   opendrift:2080:                10.542866060310867 <- longitude -> 10.731830550346466
23:10 DEBUG   opendrift:2085:                -21.705758920007565   <- z ->   -0.08053058113608469
23:10 DEBUG   opendrift:2086: ---------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:10 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:10 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:10 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:10 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:10 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 23:00:00 (before)
                2025-03-04 00:00:00 (after)
23:13 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:13 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:13 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:13 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:13 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:13 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:13 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 40x34x7) for time after (2025-03-04 00:00:00)
23:13 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 23:00:00) in space  (linearNDFast)
23:13 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:13 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 00:00:00) in space  (linearNDFast)
23:13 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:13 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 23:00:00, weight 0.62) and
                      after (2025-03-04 00:00:00, weight 0.38) in time
23:13 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:13 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.457145018610746 and -59.2681804913539 degrees.
23:13 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.457145018610746 and -59.2681804913539 degrees.
23:13 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:13 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:13 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:13 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:13 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:13 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:13 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:13 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:13 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:13 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:13 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:13 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:13 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:13 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:13 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:13 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:13 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:13 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:13 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:13 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:13 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0967676 (min) 0.426935 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.149207 (min) 0.326061 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.318198 (min) -0.257243 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.2179 (min) 13.2814 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.60989 (min) 3.60963 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 10.7362 (min) 23.0487 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.3333 (min) 7.53749 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 27.9996 (min) 33.8791 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000147714 (min) 0.000126984 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:13 DEBUG   opendrift:694: No elements hit coastline.
23:13 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:13 DEBUG   opendrift:1695: No elements to deactivate
23:13 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:13 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:13 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:13 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 11
23:13 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 2 0 0 2 0 0]
23:13 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 0 3 3 0 3 3]
23:13 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 266.   0.]
 [  0.   0.   0.   0.   0.]
 [ 28.   0.   0. 114.   0.]
 [  0.   0. 371.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:13 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:13 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:13 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:13 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:13 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.13472437115594849
23:13 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:13 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:13 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:13 DEBUG   opendrift.models.oceandrift:516: 67 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 55 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 59 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 63 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 57 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:13 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 25
23:13 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:13 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 25 elements
23:13 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:13 INFO    opendrift.models.chemicaldrift:1861: partitioning: [211, 0, 289, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:13 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:13 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:13 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:13 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:13 DEBUG   opendrift:2055: ======================================================================
23:13 INFO    opendrift:2056: 2025-03-03 23:52:43.574110 - step 20 of 96 - 500 active elements (0 deactivated)
23:13 DEBUG   opendrift:2062: 0 elements scheduled.
23:13 DEBUG   opendrift:2064: ======================================================================
23:13 DEBUG   opendrift:2075:                57.602256001908366 <- latitude  -> 57.713728849374924
23:13 DEBUG   opendrift:2080:                10.540723792796536 <- longitude -> 10.734014440127781
23:13 DEBUG   opendrift:2085:                -20.260870299439464   <- z ->   -0.08074532949252756
23:13 DEBUG   opendrift:2086: ---------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:13 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:13 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:13 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:13 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-03 23:00:00 (before)
                2025-03-04 00:00:00 (after)
23:13 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-03 23:00:00) in space  (linearNDFast)
23:13 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:13 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 00:00:00) in space  (linearNDFast)
23:13 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:13 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-03 23:00:00, weight 0.12) and
                      after (2025-03-04 00:00:00, weight 0.88) in time
23:13 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:13 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.45928727697353 and -59.26599660490112 degrees.
23:13 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.45928727697353 and -59.26599660490112 degrees.
23:13 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:13 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:13 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:13 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:13 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:13 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:13 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:13 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:13 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:13 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:13 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:13 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:13 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:13 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:13 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:13 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:13 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:13 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:13 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:13 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:13 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.102915 (min) 0.430944 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.160614 (min) 0.325276 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.354801 (min) -0.29119 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 11.4932 (min) 13.9224 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.29122 (min) 3.06492 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 11.0057 (min) 23.1756 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.31603 (min) 7.52086 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 27.836 (min) 33.838 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000163374 (min) 0.000150684 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:13 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:13 DEBUG   opendrift:694: No elements hit coastline.
23:13 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:13 DEBUG   opendrift:1695: No elements to deactivate
23:13 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:13 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:13 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:13 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 16
23:13 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 2 2 0 2 0 0 2 0 0 2]
23:13 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 0 0 3 0 3 3 0 3 3 0]
23:13 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 277.   0.]
 [  0.   0.   0.   0.   0.]
 [ 33.   0.   0. 130.   0.]
 [  0.   0. 396.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:13 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:13 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:13 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:13 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:13 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.14638499269262986
23:13 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:13 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:13 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:13 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 63 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 66 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 69 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 61 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 57 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 55 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 63 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 61 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 57 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 55 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 57 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 61 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:13 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:13 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:13 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:13 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 21
23:13 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:13 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 21 elements
23:13 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:13 INFO    opendrift.models.chemicaldrift:1861: partitioning: [205, 0, 295, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:13 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:13 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:13 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:13 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:13 DEBUG   opendrift:2055: ======================================================================
23:13 INFO    opendrift:2056: 2025-03-04 00:22:43.574110 - step 21 of 96 - 500 active elements (0 deactivated)
23:13 DEBUG   opendrift:2062: 0 elements scheduled.
23:13 DEBUG   opendrift:2064: ======================================================================
23:13 DEBUG   opendrift:2075:                57.6064906133784 <- latitude  -> 57.71751252174497
23:13 DEBUG   opendrift:2080:                10.545864038272194 <- longitude -> 10.735959856041532
23:13 DEBUG   opendrift:2085:                -22.18632244011033   <- z ->   -0.08697847378248769
23:13 DEBUG   opendrift:2086: ---------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:13 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:13 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:13 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:13 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:13 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 00:00:00 (before)
                2025-03-04 01:00:00 (after)
23:15 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:15 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:15 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:15 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:15 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:15 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:15 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 42x33x7) for time after (2025-03-04 01:00:00)
23:15 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 00:00:00) in space  (linearNDFast)
23:15 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:15 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 01:00:00) in space  (linearNDFast)
23:15 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:15 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 00:00:00, weight 0.62) and
                      after (2025-03-04 01:00:00, weight 0.38) in time
23:15 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:15 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.454147042076194 and -59.26405119063802 degrees.
23:15 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.454147042076194 and -59.26405119063802 degrees.
23:15 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:15 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:15 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:15 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:15 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:15 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:15 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:15 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:15 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:15 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:15 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:15 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:15 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:15 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:15 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:15 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:15 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:15 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:15 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:15 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:15 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0943683 (min) 0.432326 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.150804 (min) 0.336134 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.373833 (min) -0.307705 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 12.2451 (min) 14.3224 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.10101 (min) 2.91069 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 11.2765 (min) 23.3001 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.30396 (min) 7.52527 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 27.7151 (min) 33.86 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000162667 (min) 0.000162913 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:15 DEBUG   opendrift:694: No elements hit coastline.
23:15 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:15 DEBUG   opendrift:1695: No elements to deactivate
23:15 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:15 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:15 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:15 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
23:15 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 2 0 2 0 2]
23:15 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 0 3 0 3 0]
23:15 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 283.   0.]
 [  0.   0.   0.   0.   0.]
 [ 36.   0.   0. 140.   0.]
 [  0.   0. 417.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:15 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:15 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:15 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.15382016478606853
23:15 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:15 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:15 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:15 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 69 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 58 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 66 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 67 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 59 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 62 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 68 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 58 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 58 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 55 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:15 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 19
23:15 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 19 elements
23:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:15 INFO    opendrift.models.chemicaldrift:1861: partitioning: [202, 0, 298, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:15 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:15 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:15 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:15 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:15 DEBUG   opendrift:2055: ======================================================================
23:15 INFO    opendrift:2056: 2025-03-04 00:52:43.574110 - step 22 of 96 - 500 active elements (0 deactivated)
23:15 DEBUG   opendrift:2062: 0 elements scheduled.
23:15 DEBUG   opendrift:2064: ======================================================================
23:15 DEBUG   opendrift:2075:                57.61058323521336 <- latitude  -> 57.72075299737398
23:15 DEBUG   opendrift:2080:                10.543021446605493 <- longitude -> 10.737716504059732
23:15 DEBUG   opendrift:2085:                -21.96636278661595   <- z ->   0.0
23:15 DEBUG   opendrift:2086: ---------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:15 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:15 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:15 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:15 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 00:00:00 (before)
                2025-03-04 01:00:00 (after)
23:15 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 00:00:00) in space  (linearNDFast)
23:15 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:15 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 01:00:00) in space  (linearNDFast)
23:15 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:15 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 00:00:00, weight 0.12) and
                      after (2025-03-04 01:00:00, weight 0.88) in time
23:15 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:15 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.45698963265373 and -59.26229452893444 degrees.
23:15 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.45698963265373 and -59.26229452893444 degrees.
23:15 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:15 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:15 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:15 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:15 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:15 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:15 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:15 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:15 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:15 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:15 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:15 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:15 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:15 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:15 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:15 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:15 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:15 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:15 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:15 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:15 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0721975 (min) 0.458648 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.123824 (min) 0.333025 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.387508 (min) -0.318534 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 12.7487 (min) 14.6804 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.01275 (min) 2.92562 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 11.027 (min) 23.5578 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.4283 (min) 7.51945 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 28.4849 (min) 33.8486 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.00018088 (min) 0.000174969 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:15 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:15 DEBUG   opendrift:694: No elements hit coastline.
23:15 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:15 DEBUG   opendrift:1695: No elements to deactivate
23:15 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:15 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:15 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:15 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
23:15 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 0 0 0 2 0 0]
23:15 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 3 3 3 0 3 3]
23:15 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 288.   0.]
 [  0.   0.   0.   0.   0.]
 [ 40.   0.   0. 153.   0.]
 [  0.   0. 436.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:15 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:15 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:15 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.16119184512879764
23:15 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:15 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:15 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:15 DEBUG   opendrift.models.oceandrift:516: 57 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 62 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 82 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 64 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 59 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 55 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 55 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 58 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:15 DEBUG   opendrift.models.oceandrift:516: 66 elements penetrated seafloor, lifting up
23:15 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:15 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:15 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 21
23:15 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 21 elements
23:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:15 INFO    opendrift.models.chemicaldrift:1861: partitioning: [201, 0, 299, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:15 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:15 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:15 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:15 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:15 DEBUG   opendrift:2055: ======================================================================
23:15 INFO    opendrift:2056: 2025-03-04 01:22:43.574110 - step 23 of 96 - 500 active elements (0 deactivated)
23:15 DEBUG   opendrift:2062: 0 elements scheduled.
23:15 DEBUG   opendrift:2064: ======================================================================
23:15 DEBUG   opendrift:2075:                57.61498334099647 <- latitude  -> 57.722753935785015
23:15 DEBUG   opendrift:2080:                10.548166338169695 <- longitude -> 10.748282978385733
23:15 DEBUG   opendrift:2085:                -22.454901913470575   <- z ->   -0.21836243594493032
23:15 DEBUG   opendrift:2086: ---------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:15 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:15 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:15 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:15 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:15 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 01:00:00 (before)
                2025-03-04 02:00:00 (after)
23:17 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:17 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:17 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:17 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:17 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:17 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:17 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 42x33x7) for time after (2025-03-04 02:00:00)
23:17 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 01:00:00) in space  (linearNDFast)
23:17 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:17 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 02:00:00) in space  (linearNDFast)
23:17 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:17 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 01:00:00, weight 0.62) and
                      after (2025-03-04 02:00:00, weight 0.38) in time
23:17 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:17 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.45184473488978 and -59.25172804939439 degrees.
23:17 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.45184473488978 and -59.25172804939439 degrees.
23:17 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:17 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:17 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:17 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:17 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:17 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:17 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:17 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:17 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:17 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:17 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:17 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:17 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:17 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:17 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:17 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:17 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:17 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:17 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0914158 (min) 0.443962 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0755777 (min) 0.332191 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.367856 (min) -0.297059 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 12.4849 (min) 14.4205 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.4255 (min) 3.40651 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 11.2985 (min) 24.4509 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.20749 (min) 7.51727 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 27.5022 (min) 33.8446 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.00019766 (min) 0.000171647 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:17 DEBUG   opendrift:694: No elements hit coastline.
23:17 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:17 DEBUG   opendrift:1695: No elements to deactivate
23:17 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:17 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:17 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:17 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
23:17 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2 2 0 0 0]
23:17 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0 0 3 3 3]
23:17 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 292.   0.]
 [  0.   0.   0.   0.   0.]
 [ 44.   0.   0. 169.   0.]
 [  0.   0. 457.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:17 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:17 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:17 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.1576343159109356
23:17 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:17 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:17 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:17 DEBUG   opendrift.models.oceandrift:516: 64 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 62 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 61 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 58 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 58 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 62 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:17 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 19
23:17 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 19 elements
23:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:17 INFO    opendrift.models.chemicaldrift:1861: partitioning: [201, 0, 299, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:17 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:17 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:17 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:17 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:17 DEBUG   opendrift:2055: ======================================================================
23:17 INFO    opendrift:2056: 2025-03-04 01:52:43.574110 - step 24 of 96 - 500 active elements (0 deactivated)
23:17 DEBUG   opendrift:2062: 0 elements scheduled.
23:17 DEBUG   opendrift:2064: ======================================================================
23:17 DEBUG   opendrift:2075:                57.61888963727082 <- latitude  -> 57.723975135751544
23:17 DEBUG   opendrift:2080:                10.547345080608762 <- longitude -> 10.753455748725415
23:17 DEBUG   opendrift:2085:                -22.299327114071733   <- z ->   0.0
23:17 DEBUG   opendrift:2086: ---------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:17 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:17 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:17 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 01:00:00 (before)
                2025-03-04 02:00:00 (after)
23:17 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 01:00:00) in space  (linearNDFast)
23:17 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:17 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 02:00:00) in space  (linearNDFast)
23:17 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:17 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 01:00:00, weight 0.12) and
                      after (2025-03-04 02:00:00, weight 0.88) in time
23:17 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:17 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.45266599841548 and -59.246555287400604 degrees.
23:17 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.45266599841548 and -59.246555287400604 degrees.
23:17 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:17 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:17 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:17 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:17 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:17 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:17 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:17 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:17 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:17 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:17 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:17 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:17 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:17 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:17 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:17 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:17 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:17 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:17 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.12184 (min) 0.46866 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0434436 (min) 0.320326 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.33666 (min) -0.265836 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 11.8359 (min) 13.9475 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.99174 (min) 4.03526 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 11.1096 (min) 24.9466 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.44902 (min) 7.49133 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 28.3734 (min) 33.81 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000264234 (min) 0.000206334 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:17 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:17 DEBUG   opendrift:694: No elements hit coastline.
23:17 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:17 DEBUG   opendrift:1695: No elements to deactivate
23:17 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:17 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:17 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:17 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
23:17 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 0]
23:17 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 3]
23:17 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 295.   0.]
 [  0.   0.   0.   0.   0.]
 [ 46.   0.   0. 184.   0.]
 [  0.   0. 476.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:17 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:17 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:17 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.15061674047235307
23:17 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:17 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:17 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:17 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 68 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 55 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 55 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 57 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 57 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 68 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:17 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:17 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:17 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:17 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 15
23:17 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 15 elements
23:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:17 INFO    opendrift.models.chemicaldrift:1861: partitioning: [200, 0, 299, 1, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:17 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:17 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:17 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:17 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:17 DEBUG   opendrift:2055: ======================================================================
23:17 INFO    opendrift:2056: 2025-03-04 02:22:43.574110 - step 25 of 96 - 500 active elements (0 deactivated)
23:17 DEBUG   opendrift:2062: 0 elements scheduled.
23:17 DEBUG   opendrift:2064: ======================================================================
23:17 DEBUG   opendrift:2075:                57.62313481072902 <- latitude  -> 57.72473006807036
23:17 DEBUG   opendrift:2080:                10.555204470039422 <- longitude -> 10.7611792966529
23:17 DEBUG   opendrift:2085:                -22.615972699578116   <- z ->   0.0
23:17 DEBUG   opendrift:2086: ---------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:17 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:17 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:17 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:17 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 02:00:00 (before)
                2025-03-04 03:00:00 (after)
23:19 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:19 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:19 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:19 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:19 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:19 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:19 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 42x33x7) for time after (2025-03-04 03:00:00)
23:19 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 02:00:00) in space  (linearNDFast)
23:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:19 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 03:00:00) in space  (linearNDFast)
23:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:19 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 02:00:00, weight 0.62) and
                      after (2025-03-04 03:00:00, weight 0.38) in time
23:19 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.44480660254287 and -59.238831734717905 degrees.
23:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.44480660254287 and -59.238831734717905 degrees.
23:19 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:19 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:19 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:19 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:19 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:19 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:19 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:19 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:19 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:19 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:19 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:19 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:19 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:19 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:19 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:19 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:19 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.118904 (min) 0.449182 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.0133214 (min) 0.299548 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.275202 (min) -0.210821 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 11.6636 (min) 13.6985 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.97747 (min) 3.76819 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 11.6576 (min) 25.4467 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.36659 (min) 7.51821 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 27.9769 (min) 33.8602 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000212163 (min) 0.000207309 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:19 DEBUG   opendrift:694: No elements hit coastline.
23:19 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:19 DEBUG   opendrift:1695: No elements to deactivate
23:19 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:19 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:19 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:19 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 2
23:19 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2]
23:19 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0]
23:19 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 296.   0.]
 [  0.   0.   0.   0.   0.]
 [ 47.   0.   0. 197.   0.]
 [  0.   0. 491.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:19 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:19 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:19 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.14478131760130847
23:19 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:19 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:19 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:19 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 57 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 51 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:19 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 18
23:19 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 18 elements
23:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:19 INFO    opendrift.models.chemicaldrift:1861: partitioning: [200, 0, 297, 3, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:19 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:19 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:19 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:19 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:19 DEBUG   opendrift:2055: ======================================================================
23:19 INFO    opendrift:2056: 2025-03-04 02:52:43.574110 - step 26 of 96 - 500 active elements (0 deactivated)
23:19 DEBUG   opendrift:2062: 0 elements scheduled.
23:19 DEBUG   opendrift:2064: ======================================================================
23:19 DEBUG   opendrift:2075:                57.62682535895837 <- latitude  -> 57.72451468366091
23:19 DEBUG   opendrift:2080:                10.552888067348599 <- longitude -> 10.771647412618625
23:19 DEBUG   opendrift:2085:                -23.13561474145408   <- z ->   -0.06261632925158805
23:19 DEBUG   opendrift:2086: ---------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:19 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:19 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 02:00:00 (before)
                2025-03-04 03:00:00 (after)
23:19 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 02:00:00) in space  (linearNDFast)
23:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:19 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 03:00:00) in space  (linearNDFast)
23:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:19 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 02:00:00, weight 0.12) and
                      after (2025-03-04 03:00:00, weight 0.88) in time
23:19 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.44712299844059 and -59.228363614354485 degrees.
23:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.44712299844059 and -59.228363614354485 degrees.
23:19 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:19 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:19 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:19 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:19 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:19 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:19 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:19 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:19 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:19 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:19 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:19 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:19 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:19 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:19 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:19 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:19 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.133174 (min) 0.478357 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.064972 (min) 0.272228 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.20816 (min) -0.146474 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 11.5874 (min) 13.5291 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.72722 (min) 3.58744 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 11.3435 (min) 26.6036 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.50118 (min) 7.47722 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 28.5964 (min) 33.7683 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000255488 (min) 0.000266302 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:19 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:19 DEBUG   opendrift:694: No elements hit coastline.
23:19 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:19 DEBUG   opendrift:1695: No elements to deactivate
23:19 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:19 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:19 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:19 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
23:19 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 0 0 2 0]
23:19 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 3 3 0 3]
23:19 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 303.   0.]
 [  0.   0.   0.   0.   0.]
 [ 49.   0.   0. 216.   0.]
 [  0.   0. 509.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:19 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:19 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:19 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.13946635479974825
23:19 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:19 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:19 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:19 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 52 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 33 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 33 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 34 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 34 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 34 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 34 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 34 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 34 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 34 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 34 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 35 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 35 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 35 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 35 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 36 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 36 elements to seafloor.
23:19 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:19 DEBUG   opendrift.models.oceandrift:534: 39 elements reached seafloor, interacting with bottom
23:19 DEBUG   opendrift:738: Lifting 39 elements to seafloor.
23:19 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 26
23:19 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 26 elements
23:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:19 INFO    opendrift.models.chemicaldrift:1861: partitioning: [195, 0, 292, 13, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:19 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:19 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:19 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:19 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:19 DEBUG   opendrift:2055: ======================================================================
23:19 INFO    opendrift:2056: 2025-03-04 03:22:43.574110 - step 27 of 96 - 500 active elements (0 deactivated)
23:19 DEBUG   opendrift:2062: 0 elements scheduled.
23:19 DEBUG   opendrift:2064: ======================================================================
23:19 DEBUG   opendrift:2075:                57.629971471475564 <- latitude  -> 57.72378166233994
23:19 DEBUG   opendrift:2080:                10.555592959316037 <- longitude -> 10.782188156184144
23:19 DEBUG   opendrift:2085:                -25.348698462233514   <- z ->   0.0
23:19 DEBUG   opendrift:2086: ---------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:19 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:19 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:19 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 03:00:00 (before)
                2025-03-04 04:00:00 (after)
23:21 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:21 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:21 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:21 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:21 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:21 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:21 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 41x34x7) for time after (2025-03-04 04:00:00)
23:21 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 03:00:00) in space  (linearNDFast)
23:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:21 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 04:00:00) in space  (linearNDFast)
23:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:21 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 03:00:00, weight 0.62) and
                      after (2025-03-04 04:00:00, weight 0.38) in time
23:21 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.444418103373685 and -59.2178228655277 degrees.
23:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.444418103373685 and -59.2178228655277 degrees.
23:21 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:21 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:21 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:21 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:21 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:21 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:21 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:21 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:21 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:21 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:21 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:21 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:21 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:21 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:21 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:21 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:21 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.125341 (min) 0.465479 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.082482 (min) 0.256197 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.134325 (min) -0.0762705 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 11.6363 (min) 13.5126 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.73127 (min) 3.56806 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 11.4803 (min) 27.4428 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.54195 (min) 7.48291 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 28.6519 (min) 33.8033 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000195837 (min) 0.000336164 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:21 DEBUG   opendrift:694: No elements hit coastline.
23:21 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:21 DEBUG   opendrift:1695: No elements to deactivate
23:21 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:21 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:21 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:21 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
23:21 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 2]
23:21 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 0]
23:21 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 306.   0.]
 [  0.   0.   0.   0.   0.]
 [ 50.   0.   0. 245.   0.]
 [  0.   0. 535.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:21 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:21 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:21 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.13919654310289384
23:21 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:21 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:21 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:21 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 53 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 56 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 54 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 50 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
23:21 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7
23:21 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 7 elements
23:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:21 INFO    opendrift.models.chemicaldrift:1861: partitioning: [193, 0, 288, 19, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:21 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:21 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:21 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:21 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:21 DEBUG   opendrift:2055: ======================================================================
23:21 INFO    opendrift:2056: 2025-03-04 03:52:43.574110 - step 28 of 96 - 500 active elements (0 deactivated)
23:21 DEBUG   opendrift:2062: 0 elements scheduled.
23:21 DEBUG   opendrift:2064: ======================================================================
23:21 DEBUG   opendrift:2075:                57.63398014964909 <- latitude  -> 57.723397353641346
23:21 DEBUG   opendrift:2080:                10.554832211346506 <- longitude -> 10.792266942997887
23:21 DEBUG   opendrift:2085:                -23.720243626997707   <- z ->   0.0
23:21 DEBUG   opendrift:2086: ---------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:21 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:21 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 03:00:00 (before)
                2025-03-04 04:00:00 (after)
23:21 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 03:00:00) in space  (linearNDFast)
23:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:21 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 04:00:00) in space  (linearNDFast)
23:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:21 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 03:00:00, weight 0.12) and
                      after (2025-03-04 04:00:00, weight 0.88) in time
23:21 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.44517886100307 and -59.20774407624347 degrees.
23:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.44517886100307 and -59.20774407624347 degrees.
23:21 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:21 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:21 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:21 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:21 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:21 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:21 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:21 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:21 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:21 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:21 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:21 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:21 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:21 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:21 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:21 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:21 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.112834 (min) 0.507922 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.0975181 (min) 0.250721 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0600707 (min) -0.00591705 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 11.7246 (min) 13.6348 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.80307 (min) 3.68577 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 11.3173 (min) 28.2487 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.50253 (min) 7.50284 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 28.5721 (min) 33.8445 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000186794 (min) 0.000251507 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:21 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:21 DEBUG   opendrift:694: No elements hit coastline.
23:21 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:21 DEBUG   opendrift:1695: No elements to deactivate
23:21 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:21 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:21 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:21 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
23:21 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 2 0 0 0 0 0]
23:21 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 0 3 3 3 3 3]
23:21 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 313.   0.]
 [  0.   0.   0.   0.   0.]
 [ 52.   0.   0. 255.   0.]
 [  0.   0. 542.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:21 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:21 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:21 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.1419781906998737
23:21 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:21 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:21 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:21 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 32 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 32 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 33 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 33 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 33 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 33 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 34 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 34 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 34 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 34 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 34 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 34 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 35 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 35 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 35 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 35 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 36 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 36 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 36 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 36 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 36 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 36 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 49 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 36 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 36 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 36 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 36 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 36 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 36 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 36 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 36 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 36 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 36 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 36 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 36 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 39 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 39 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 39 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 39 elements to seafloor.
23:21 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:21 DEBUG   opendrift.models.oceandrift:534: 39 elements reached seafloor, interacting with bottom
23:21 DEBUG   opendrift:738: Lifting 39 elements to seafloor.
23:21 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 8
23:21 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 8 elements
23:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:21 INFO    opendrift.models.chemicaldrift:1861: partitioning: [188, 0, 281, 31, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:21 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:21 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:21 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:21 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
23:21 DEBUG   opendrift:2055: ======================================================================
23:21 INFO    opendrift:2056: 2025-03-04 04:22:43.574110 - step 29 of 96 - 500 active elements (0 deactivated)
23:21 DEBUG   opendrift:2062: 0 elements scheduled.
23:21 DEBUG   opendrift:2064: ======================================================================
23:21 DEBUG   opendrift:2075:                57.637348776501604 <- latitude  -> 57.72393166911813
23:21 DEBUG   opendrift:2080:                10.551431112242163 <- longitude -> 10.80759541548733
23:21 DEBUG   opendrift:2085:                -24.69062152039472   <- z ->   0.0
23:21 DEBUG   opendrift:2086: ---------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:21 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:21 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:21 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 04:00:00 (before)
                2025-03-04 05:00:00 (after)
23:23 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:23 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:23 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:23 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:23 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:23 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:23 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 41x36x7) for time after (2025-03-04 05:00:00)
23:23 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 04:00:00) in space  (linearNDFast)
23:23 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:23 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 05:00:00) in space  (linearNDFast)
23:23 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:23 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 04:00:00, weight 0.62) and
                      after (2025-03-04 05:00:00, weight 0.38) in time
23:23 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:23 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.44857995122239 and -59.192415619376604 degrees.
23:23 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.44857995122239 and -59.192415619376604 degrees.
23:23 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:23 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:23 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:23 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:23 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:23 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:23 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:23 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:23 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:23 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:23 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:23 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:23 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:23 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:23 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:23 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:23 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:23 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:23 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:23 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:23 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0995248 (min) 0.473009 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.106732 (min) 0.246667 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.00185432 (min) 0.0512112 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 11.6561 (min) 13.5334 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.86519 (min) 3.71394 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 10.9158 (min) 28.7783 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.5286 (min) 7.46319 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 28.6448 (min) 33.7505 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000170088 (min) 0.000269239 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:23 DEBUG   opendrift:694: No elements hit coastline.
23:23 DEBUG   opendrift:733: No elements hit seafloor.
23:23 DEBUG   opendrift:1695: No elements to deactivate
23:23 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:23 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:23 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:23 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 2
23:23 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2]
23:23 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0]
23:23 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 313.   0.]
 [  0.   0.   0.   0.   0.]
 [ 54.   0.   0. 268.   0.]
 [  0.   0. 550.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:23 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:23 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:23 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.1396232624603653
23:23 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:23 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:23 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:23 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 48 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:23 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:23 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:23 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:23 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 44 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:23 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 47 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:23 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:23 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:23 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:23 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
23:23 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:23 INFO    opendrift.models.chemicaldrift:1861: partitioning: [190, 0, 279, 31, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:23 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:23 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:23 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:23 DEBUG   opendrift:733: No elements hit seafloor.
23:23 DEBUG   opendrift:2055: ======================================================================
23:23 INFO    opendrift:2056: 2025-03-04 04:52:43.574110 - step 30 of 96 - 500 active elements (0 deactivated)
23:23 DEBUG   opendrift:2062: 0 elements scheduled.
23:23 DEBUG   opendrift:2064: ======================================================================
23:23 DEBUG   opendrift:2075:                57.640909307593176 <- latitude  -> 57.72421439628734
23:23 DEBUG   opendrift:2080:                10.559199457118996 <- longitude -> 10.808829049187969
23:23 DEBUG   opendrift:2085:                -24.665382385253906   <- z ->   0.0
23:23 DEBUG   opendrift:2086: ---------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:23 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:23 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:23 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:23 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 04:00:00 (before)
                2025-03-04 05:00:00 (after)
23:23 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 04:00:00) in space  (linearNDFast)
23:23 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:23 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 05:00:00) in space  (linearNDFast)
23:23 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:23 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 04:00:00, weight 0.12) and
                      after (2025-03-04 05:00:00, weight 0.88) in time
23:23 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:23 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.44081160097781 and -59.19118198210541 degrees.
23:23 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.44081160097781 and -59.19118198210541 degrees.
23:23 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:23 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:23 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:23 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:23 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:23 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:23 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:23 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:23 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:23 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:23 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:23 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:23 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:23 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:23 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:23 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:23 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:23 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:23 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:23 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:23 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0946572 (min) 0.469711 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.118433 (min) 0.21994 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.0552664 (min) 0.102298 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 11.4491 (min) 13.9106 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.96983 (min) 3.62811 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 11.5493 (min) 29.4292 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.6511 (min) 7.45558 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 28.886 (min) 33.7345 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.00018013 (min) 0.000249784 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:23 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:23 DEBUG   opendrift:694: No elements hit coastline.
23:23 DEBUG   opendrift:733: No elements hit seafloor.
23:23 DEBUG   opendrift:1695: No elements to deactivate
23:23 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:23 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:23 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:23 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
23:23 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 2 0 2]
23:23 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 0 3 0]
23:23 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 318.   0.]
 [  0.   0.   0.   0.   0.]
 [ 56.   0.   0. 268.   0.]
 [  0.   0. 550.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:23 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:23 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:23 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.1466701689412574
23:23 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:23 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:23 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:23 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:23 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:23 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:23 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:23 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:23 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 46 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:23 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:23 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:23 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
23:23 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
23:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:23 INFO    opendrift.models.chemicaldrift:1861: partitioning: [187, 0, 280, 33, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:23 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:23 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:23 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:23 DEBUG   opendrift:733: No elements hit seafloor.
23:23 DEBUG   opendrift:2055: ======================================================================
23:23 INFO    opendrift:2056: 2025-03-04 05:22:43.574110 - step 31 of 96 - 500 active elements (0 deactivated)
23:23 DEBUG   opendrift:2062: 0 elements scheduled.
23:23 DEBUG   opendrift:2064: ======================================================================
23:23 DEBUG   opendrift:2075:                57.64433369803127 <- latitude  -> 57.72236108292714
23:23 DEBUG   opendrift:2080:                10.561665646193259 <- longitude -> 10.821867998061034
23:23 DEBUG   opendrift:2085:                -27.96461584016569   <- z ->   0.0
23:23 DEBUG   opendrift:2086: ---------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:23 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:23 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:23 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:23 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:23 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 05:00:00 (before)
                2025-03-04 06:00:00 (after)
23:25 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:25 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:25 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:25 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:25 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:25 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:25 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 41x36x7) for time after (2025-03-04 06:00:00)
23:25 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 05:00:00) in space  (linearNDFast)
23:25 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:25 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 06:00:00) in space  (linearNDFast)
23:25 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:25 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 05:00:00, weight 0.62) and
                      after (2025-03-04 06:00:00, weight 0.38) in time
23:25 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:25 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.438345419782216 and -59.178143016867544 degrees.
23:25 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.438345419782216 and -59.178143016867544 degrees.
23:25 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:25 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:25 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:25 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:25 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:25 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:25 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:25 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:25 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:25 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:25 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:25 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:25 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:25 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:25 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:25 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:25 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:25 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:25 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:25 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:25 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0952006 (min) 0.453674 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.0933902 (min) 0.238538 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.0817163 (min) 0.126463 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 11.058 (min) 13.7416 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.99399 (min) 3.66677 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 11.6942 (min) 29.8544 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.5283 (min) 7.45776 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 28.5917 (min) 33.7471 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000177469 (min) 0.000240979 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:25 DEBUG   opendrift:694: No elements hit coastline.
23:25 DEBUG   opendrift:733: No elements hit seafloor.
23:25 DEBUG   opendrift:1695: No elements to deactivate
23:25 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:25 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:25 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:25 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
23:25 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 0 2 0 2]
23:25 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 3 0 3 0]
23:25 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 322.   0.]
 [  0.   0.   0.   0.   0.]
 [ 60.   0.   0. 268.   0.]
 [  0.   0. 553.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:25 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:25 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:25 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.14359473077893897
23:25 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:25 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:25 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:25 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 43 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 41 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:25 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2
23:25 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
23:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:25 INFO    opendrift.models.chemicaldrift:1861: partitioning: [187, 0, 278, 35, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:25 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:25 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:25 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:25 DEBUG   opendrift:733: No elements hit seafloor.
23:25 DEBUG   opendrift:2055: ======================================================================
23:25 INFO    opendrift:2056: 2025-03-04 05:52:43.574110 - step 32 of 96 - 500 active elements (0 deactivated)
23:25 DEBUG   opendrift:2062: 0 elements scheduled.
23:25 DEBUG   opendrift:2064: ======================================================================
23:25 DEBUG   opendrift:2075:                57.64774491205059 <- latitude  -> 57.72094978128969
23:25 DEBUG   opendrift:2080:                10.562828390104917 <- longitude -> 10.825498377957029
23:25 DEBUG   opendrift:2085:                -27.398447036743164   <- z ->   -0.07538076686832426
23:25 DEBUG   opendrift:2086: ---------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:25 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:25 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:25 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:25 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 05:00:00 (before)
                2025-03-04 06:00:00 (after)
23:25 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 05:00:00) in space  (linearNDFast)
23:25 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:25 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 06:00:00) in space  (linearNDFast)
23:25 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:25 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 05:00:00, weight 0.12) and
                      after (2025-03-04 06:00:00, weight 0.88) in time
23:25 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:25 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.437182675647186 and -59.17451264183265 degrees.
23:25 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.437182675647186 and -59.17451264183265 degrees.
23:25 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:25 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:25 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:25 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:25 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:25 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:25 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:25 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:25 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:25 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:25 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:25 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:25 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:25 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:25 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:25 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:25 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:25 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:25 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:25 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:25 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0730641 (min) 0.441889 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.131313 (min) 0.215735 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.0973016 (min) 0.142502 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.4461 (min) 13.4808 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.99375 (min) 3.74824 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 11.7066 (min) 30.3094 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.64864 (min) 7.44882 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 28.9912 (min) 33.7329 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000154511 (min) 0.000432999 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:25 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:25 DEBUG   opendrift:694: No elements hit coastline.
23:25 DEBUG   opendrift:733: No elements hit seafloor.
23:25 DEBUG   opendrift:1695: No elements to deactivate
23:25 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:25 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:25 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:25 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
23:25 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 2 2]
23:25 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 0 0]
23:25 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 324.   0.]
 [  0.   0.   0.   0.   0.]
 [ 63.   0.   0. 268.   0.]
 [  0.   0. 555.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:25 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:25 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:25 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.13887311081497086
23:25 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:25 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:25 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:25 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:25 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:25 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
23:25 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
23:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:25 INFO    opendrift.models.chemicaldrift:1861: partitioning: [188, 0, 277, 35, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:25 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:25 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:25 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:25 DEBUG   opendrift:733: No elements hit seafloor.
23:25 DEBUG   opendrift:2055: ======================================================================
23:25 INFO    opendrift:2056: 2025-03-04 06:22:43.574110 - step 33 of 96 - 500 active elements (0 deactivated)
23:25 DEBUG   opendrift:2062: 0 elements scheduled.
23:25 DEBUG   opendrift:2064: ======================================================================
23:25 DEBUG   opendrift:2075:                57.651175525217845 <- latitude  -> 57.71996262965482
23:25 DEBUG   opendrift:2080:                10.56911931431428 <- longitude -> 10.834520480750967
23:25 DEBUG   opendrift:2085:                -27.398447036743164   <- z ->   -0.1260744525937082
23:25 DEBUG   opendrift:2086: ---------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:25 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:25 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:25 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:25 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:25 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 06:00:00 (before)
                2025-03-04 07:00:00 (after)
23:27 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:27 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:27 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:27 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:27 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:27 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:27 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 41x37x7) for time after (2025-03-04 07:00:00)
23:27 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 06:00:00) in space  (linearNDFast)
23:27 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:27 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 07:00:00) in space  (linearNDFast)
23:27 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:27 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 06:00:00, weight 0.62) and
                      after (2025-03-04 07:00:00, weight 0.38) in time
23:27 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:27 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.43089174822604 and -59.16549053100837 degrees.
23:27 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.43089174822604 and -59.16549053100837 degrees.
23:27 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:27 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:27 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:27 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:27 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:27 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:27 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:27 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:27 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:27 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:27 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:27 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:27 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:27 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:27 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:27 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:27 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:27 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:27 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:27 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:27 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0601116 (min) 0.436857 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.0811447 (min) 0.244717 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.08665 (min) 0.133288 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.3856 (min) 13.1843 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.0101 (min) 3.91828 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 12.4376 (min) 30.5524 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.60358 (min) 7.37419 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 28.8387 (min) 33.5805 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000159126 (min) 0.000358307 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:27 DEBUG   opendrift:694: No elements hit coastline.
23:27 DEBUG   opendrift:733: No elements hit seafloor.
23:27 DEBUG   opendrift:1695: No elements to deactivate
23:27 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:27 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:27 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:27 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 11
23:27 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 0 2 0 0 0 2 0]
23:27 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 3 0 3 3 3 0 3]
23:27 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 331.   0.]
 [  0.   0.   0.   0.   0.]
 [ 67.   0.   0. 268.   0.]
 [  0.   0. 557.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:27 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:27 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:27 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.13327544308515105
23:27 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:27 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:27 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:27 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:27 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 15
23:27 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 11 elements
23:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:27 INFO    opendrift.models.chemicaldrift:1861: partitioning: [185, 0, 284, 31, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:27 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:27 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:27 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift:2055: ======================================================================
23:27 INFO    opendrift:2056: 2025-03-04 06:52:43.574110 - step 34 of 96 - 500 active elements (0 deactivated)
23:27 DEBUG   opendrift:2062: 0 elements scheduled.
23:27 DEBUG   opendrift:2064: ======================================================================
23:27 DEBUG   opendrift:2075:                57.65478383428238 <- latitude  -> 57.71932834695531
23:27 DEBUG   opendrift:2080:                10.578370564307171 <- longitude -> 10.834943623044296
23:27 DEBUG   opendrift:2085:                -27.398447036743164   <- z ->   0.0
23:27 DEBUG   opendrift:2086: ---------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:27 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:27 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:27 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:27 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 06:00:00 (before)
                2025-03-04 07:00:00 (after)
23:27 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 06:00:00) in space  (linearNDFast)
23:27 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:27 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 07:00:00) in space  (linearNDFast)
23:27 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:27 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 06:00:00, weight 0.12) and
                      after (2025-03-04 07:00:00, weight 0.88) in time
23:27 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:27 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.421640496931076 and -59.16506739792405 degrees.
23:27 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.421640496931076 and -59.16506739792405 degrees.
23:27 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:27 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:27 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:27 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:27 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:27 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:27 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:27 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:27 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:27 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:27 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:27 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:27 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:27 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:27 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:27 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:27 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:27 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:27 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:27 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:27 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0615057 (min) 0.437876 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.105357 (min) 0.25152 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.0689998 (min) 0.118279 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.2467 (min) 12.9598 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.08971 (min) 4.12266 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 12.9954 (min) 30.9268 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.73843 (min) 7.4209 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 29.257 (min) 33.6669 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000176869 (min) 0.000405067 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:27 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:27 DEBUG   opendrift:694: No elements hit coastline.
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift:1695: No elements to deactivate
23:27 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:27 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:27 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:27 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 11
23:27 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 0 0 2 2 2 2 2 0]
23:27 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 3 3 0 0 0 0 0 3]
23:27 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 334.   0.]
 [  0.   0.   0.   0.   0.]
 [ 75.   0.   0. 268.   0.]
 [  0.   0. 568.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:27 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:27 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:27 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.1299020484174452
23:27 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:27 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:27 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:27 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:27 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:27 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:27 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 17
23:27 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 15 elements
23:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:27 INFO    opendrift.models.chemicaldrift:1861: partitioning: [190, 0, 291, 19, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:27 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:27 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:27 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:27 DEBUG   opendrift:733: No elements hit seafloor.
23:27 DEBUG   opendrift:2055: ======================================================================
23:27 INFO    opendrift:2056: 2025-03-04 07:22:43.574110 - step 35 of 96 - 500 active elements (0 deactivated)
23:27 DEBUG   opendrift:2062: 0 elements scheduled.
23:27 DEBUG   opendrift:2064: ======================================================================
23:27 DEBUG   opendrift:2075:                57.65821531648663 <- latitude  -> 57.72163240777812
23:27 DEBUG   opendrift:2080:                10.583323626020789 <- longitude -> 10.842179060921845
23:27 DEBUG   opendrift:2085:                -30.497212154277133   <- z ->   0.0
23:27 DEBUG   opendrift:2086: ---------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:27 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:27 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:27 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:27 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:27 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 07:00:00 (before)
                2025-03-04 08:00:00 (after)
23:29 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:29 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:29 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:29 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:29 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:29 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:29 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 39x37x7) for time after (2025-03-04 08:00:00)
23:29 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 07:00:00) in space  (linearNDFast)
23:29 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:29 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 08:00:00) in space  (linearNDFast)
23:29 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:29 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 07:00:00, weight 0.62) and
                      after (2025-03-04 08:00:00, weight 0.38) in time
23:29 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.416687436256865 and -59.15783196685469 degrees.
23:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.416687436256865 and -59.15783196685469 degrees.
23:29 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:29 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:29 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:29 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:29 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:29 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:29 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:29 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:29 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:29 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:29 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:29 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:29 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:29 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:29 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:29 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:29 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0521978 (min) 0.443 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.0220721 (min) 0.273489 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.0420177 (min) 0.091454 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.4516 (min) 12.9754 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.03216 (min) 3.98154 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 13.5152 (min) 31.0661 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.85593 (min) 7.40177 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 29.5888 (min) 33.6336 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000185722 (min) 0.000297694 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:29 DEBUG   opendrift:694: No elements hit coastline.
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift:1695: No elements to deactivate
23:29 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:29 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:29 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:29 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 11
23:29 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 0 2 0 2 2 2]
23:29 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 3 0 3 0 0 0]
23:29 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 340.   0.]
 [  0.   0.   0.   0.   0.]
 [ 80.   0.   0. 268.   0.]
 [  0.   0. 583.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:29 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:29 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:29 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12913113768096024
23:29 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:29 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:29 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:29 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:29 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 16
23:29 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 14 elements
23:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:29 INFO    opendrift.models.chemicaldrift:1861: partitioning: [189, 0, 300, 11, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:29 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:29 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:29 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:29 DEBUG   opendrift:733: No elements hit seafloor.
23:29 DEBUG   opendrift:2055: ======================================================================
23:29 INFO    opendrift:2056: 2025-03-04 07:52:43.574110 - step 36 of 96 - 500 active elements (0 deactivated)
23:29 DEBUG   opendrift:2062: 0 elements scheduled.
23:29 DEBUG   opendrift:2064: ======================================================================
23:29 DEBUG   opendrift:2075:                57.66240229659393 <- latitude  -> 57.724894289259254
23:29 DEBUG   opendrift:2080:                10.587938903593374 <- longitude -> 10.851413697400067
23:29 DEBUG   opendrift:2085:                -30.876048909715816   <- z ->   0.0
23:29 DEBUG   opendrift:2086: ---------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:29 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:29 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 07:00:00 (before)
                2025-03-04 08:00:00 (after)
23:29 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 07:00:00) in space  (linearNDFast)
23:29 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:29 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 08:00:00) in space  (linearNDFast)
23:29 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:29 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 07:00:00, weight 0.12) and
                      after (2025-03-04 08:00:00, weight 0.88) in time
23:29 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.41207215368709 and -59.14859732159237 degrees.
23:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.41207215368709 and -59.14859732159237 degrees.
23:29 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:29 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:29 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:29 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:29 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:29 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:29 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:29 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:29 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:29 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:29 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:29 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:29 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:29 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:29 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:29 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:29 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0476546 (min) 0.443839 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.0236095 (min) 0.283683 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.0115038 (min) 0.0607597 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.5664 (min) 13.1768 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.84416 (min) 3.69873 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 13.5877 (min) 31.6569 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 6.00467 (min) 7.35808 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.0291 (min) 33.5987 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000172406 (min) 0.000273199 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:29 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:29 DEBUG   opendrift:694: No elements hit coastline.
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift:1695: No elements to deactivate
23:29 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:29 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:29 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:29 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
23:29 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 2 0]
23:29 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 0 3]
23:29 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 344.   0.]
 [  0.   0.   0.   0.   0.]
 [ 82.   0.   0. 268.   0.]
 [  0.   0. 597.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:29 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:29 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:29 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.1315427650706241
23:29 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:29 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:29 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:29 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 45 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:29 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
23:29 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:29 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:29 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7
23:29 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
23:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:29 INFO    opendrift.models.chemicaldrift:1861: partitioning: [187, 0, 302, 11, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:29 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:29 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:29 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:29 DEBUG   opendrift:733: No elements hit seafloor.
23:29 DEBUG   opendrift:2055: ======================================================================
23:29 INFO    opendrift:2056: 2025-03-04 08:22:43.574110 - step 37 of 96 - 500 active elements (0 deactivated)
23:29 DEBUG   opendrift:2062: 0 elements scheduled.
23:29 DEBUG   opendrift:2064: ======================================================================
23:29 DEBUG   opendrift:2075:                57.666979823955984 <- latitude  -> 57.72943014541352
23:29 DEBUG   opendrift:2080:                10.591660677250069 <- longitude -> 10.853944626297835
23:29 DEBUG   opendrift:2085:                -29.060648033892885   <- z ->   0.0
23:29 DEBUG   opendrift:2086: ---------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:29 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:29 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:29 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 08:00:00 (before)
                2025-03-04 09:00:00 (after)
23:31 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:31 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:31 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:31 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:31 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:31 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:31 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 39x38x7) for time after (2025-03-04 09:00:00)
23:31 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 08:00:00) in space  (linearNDFast)
23:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:31 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 09:00:00) in space  (linearNDFast)
23:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:31 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 08:00:00, weight 0.62) and
                      after (2025-03-04 09:00:00, weight 0.38) in time
23:31 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.40835037237354 and -59.14606638860646 degrees.
23:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.40835037237354 and -59.14606638860646 degrees.
23:31 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:31 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:31 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:31 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:31 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:31 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:31 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:31 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:31 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:31 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:31 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:31 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:31 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:31 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:31 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:31 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:31 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0306678 (min) 0.457516 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0125813 (min) 0.298627 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0244848 (min) 0.0259405 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.1676 (min) 13.1129 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.12004 (min) 3.91093 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 13.658 (min) 32.2687 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.99339 (min) 7.42099 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 29.9104 (min) 33.6936 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.00019933 (min) 0.000263097 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:31 DEBUG   opendrift:694: No elements hit coastline.
23:31 DEBUG   opendrift:733: No elements hit seafloor.
23:31 DEBUG   opendrift:1695: No elements to deactivate
23:31 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:31 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:31 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:31 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
23:31 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 2 0]
23:31 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 0 3]
23:31 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 349.   0.]
 [  0.   0.   0.   0.   0.]
 [ 84.   0.   0. 268.   0.]
 [  0.   0. 601.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:31 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:31 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:31 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:31 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:31 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.13154656384307536
23:31 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:31 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:31 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:31 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 32 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 39 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 36 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:31 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 17
23:31 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:31 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 16 elements
23:31 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:31 INFO    opendrift.models.chemicaldrift:1861: partitioning: [184, 0, 308, 8, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:31 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:31 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:31 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:31 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:31 DEBUG   opendrift:2055: ======================================================================
23:31 INFO    opendrift:2056: 2025-03-04 08:52:43.574110 - step 38 of 96 - 500 active elements (0 deactivated)
23:31 DEBUG   opendrift:2062: 0 elements scheduled.
23:31 DEBUG   opendrift:2064: ======================================================================
23:31 DEBUG   opendrift:2075:                57.6708293144094 <- latitude  -> 57.73386683657898
23:31 DEBUG   opendrift:2080:                10.596820657049587 <- longitude -> 10.855753887959962
23:31 DEBUG   opendrift:2085:                -30.622638788772036   <- z ->   0.0
23:31 DEBUG   opendrift:2086: ---------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:31 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:31 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:31 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 08:00:00 (before)
                2025-03-04 09:00:00 (after)
23:31 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 08:00:00) in space  (linearNDFast)
23:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:31 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 09:00:00) in space  (linearNDFast)
23:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:31 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 08:00:00, weight 0.12) and
                      after (2025-03-04 09:00:00, weight 0.88) in time
23:31 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.40319039084861 and -59.144257136078465 degrees.
23:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.40319039084861 and -59.144257136078465 degrees.
23:31 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:31 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:31 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:31 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:31 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:31 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:31 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:31 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:31 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:31 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:31 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:31 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:31 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:31 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:31 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:31 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:31 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0243235 (min) 0.463246 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0373836 (min) 0.318378 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.061737 (min) -0.0108424 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.80082 (min) 12.8709 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.39265 (min) 4.34489 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 14.1439 (min) 32.8929 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.94285 (min) 7.33927 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 29.8106 (min) 33.5564 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000223633 (min) 0.000263461 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:31 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:31 DEBUG   opendrift:694: No elements hit coastline.
23:31 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:31 DEBUG   opendrift:1695: No elements to deactivate
23:31 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:31 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:31 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:31 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
23:31 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 0]
23:31 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 3]
23:31 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 352.   0.]
 [  0.   0.   0.   0.   0.]
 [ 86.   0.   0. 276.   0.]
 [  0.   0. 617.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:31 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:31 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:31 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:31 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:31 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12928786175777854
23:31 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:31 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:31 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:31 DEBUG   opendrift.models.oceandrift:516: 38 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 40 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 42 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:31 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
23:31 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:31 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:31 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 16
23:31 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:31 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 16 elements
23:31 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:31 INFO    opendrift.models.chemicaldrift:1861: partitioning: [183, 0, 308, 9, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:31 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:31 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:31 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:31 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:31 DEBUG   opendrift:2055: ======================================================================
23:31 INFO    opendrift:2056: 2025-03-04 09:22:43.574110 - step 39 of 96 - 500 active elements (0 deactivated)
23:31 DEBUG   opendrift:2062: 0 elements scheduled.
23:31 DEBUG   opendrift:2064: ======================================================================
23:31 DEBUG   opendrift:2075:                57.675171328047774 <- latitude  -> 57.738701648894626
23:31 DEBUG   opendrift:2080:                10.606767852162772 <- longitude -> 10.858081029630421
23:31 DEBUG   opendrift:2085:                -29.365837649524696   <- z ->   0.0
23:31 DEBUG   opendrift:2086: ---------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:31 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:31 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:31 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:31 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 09:00:00 (before)
                2025-03-04 10:00:00 (after)
23:33 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:33 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:33 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:33 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:33 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:33 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:33 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 38x37x7) for time after (2025-03-04 10:00:00)
23:33 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 09:00:00) in space  (linearNDFast)
23:33 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:33 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 10:00:00) in space  (linearNDFast)
23:33 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:33 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 09:00:00, weight 0.62) and
                      after (2025-03-04 10:00:00, weight 0.38) in time
23:33 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:33 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.39324319397611 and -59.14192998200227 degrees.
23:33 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.39324319397611 and -59.14192998200227 degrees.
23:33 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:33 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:33 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:33 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:33 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:33 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:33 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:33 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:33 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:33 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:33 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:33 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:33 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:33 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:33 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:33 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:33 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:33 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:33 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:33 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:33 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:33 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:33 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0292217 (min) 0.482107 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0429647 (min) 0.339704 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.100635 (min) -0.0501572 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.82468 (min) 13.2676 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.56276 (min) 4.38115 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 14.8232 (min) 33.4917 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.93792 (min) 7.40023 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 29.7805 (min) 33.6623 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000276799 (min) 0.000225062 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:33 DEBUG   opendrift:694: No elements hit coastline.
23:33 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:33 DEBUG   opendrift:1695: No elements to deactivate
23:33 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:33 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:33 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:33 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
23:33 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 2]
23:33 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 0]
23:33 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 352.   0.]
 [  0.   0.   0.   0.   0.]
 [ 91.   0.   0. 290.   0.]
 [  0.   0. 633.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:33 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:33 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:33 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:33 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:33 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.138117522264767
23:33 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:33 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:33 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:33 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 35 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 10
23:33 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:33 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 10 elements
23:33 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:33 INFO    opendrift.models.chemicaldrift:1861: partitioning: [188, 0, 306, 6, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:33 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:33 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:33 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:33 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:33 DEBUG   opendrift:2055: ======================================================================
23:33 INFO    opendrift:2056: 2025-03-04 09:52:43.574110 - step 40 of 96 - 500 active elements (0 deactivated)
23:33 DEBUG   opendrift:2062: 0 elements scheduled.
23:33 DEBUG   opendrift:2064: ======================================================================
23:33 DEBUG   opendrift:2075:                57.67874150035426 <- latitude  -> 57.742777212724725
23:33 DEBUG   opendrift:2080:                10.612240243960349 <- longitude -> 10.866849723976037
23:33 DEBUG   opendrift:2085:                -30.869464570312545   <- z ->   0.0
23:33 DEBUG   opendrift:2086: ---------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:33 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:33 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:33 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:33 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 09:00:00 (before)
                2025-03-04 10:00:00 (after)
23:33 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 09:00:00) in space  (linearNDFast)
23:33 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:33 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 10:00:00) in space  (linearNDFast)
23:33 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:33 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 09:00:00, weight 0.12) and
                      after (2025-03-04 10:00:00, weight 0.88) in time
23:33 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:33 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.38777081210806 and -59.13316129003926 degrees.
23:33 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.38777081210806 and -59.13316129003926 degrees.
23:33 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:33 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:33 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:33 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:33 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:33 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:33 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:33 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:33 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:33 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:33 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:33 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:33 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:33 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:33 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:33 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:33 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:33 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:33 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:33 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:33 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:33 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:33 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0436091 (min) 0.493854 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0546024 (min) 0.347339 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.139981 (min) -0.0910154 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.9559 (min) 13.7354 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.62514 (min) 4.32284 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 15.0208 (min) 34.2756 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 6.23189 (min) 7.22018 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.6487 (min) 33.574 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000319606 (min) 0.000189835 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:33 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:33 DEBUG   opendrift:694: No elements hit coastline.
23:33 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:33 DEBUG   opendrift:1695: No elements to deactivate
23:33 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:33 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
23:33 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:33 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
23:33 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 0 2 2]
23:33 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 3 0 0]
23:33 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 353.   0.]
 [  0.   0.   0.   0.   0.]
 [ 96.   0.   0. 297.   0.]
 [  0.   0. 643.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:33 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:33 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:33 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:33 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:33 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.14773035125726536
23:33 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:33 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:33 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:33 DEBUG   opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 34 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 37 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 33 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 31 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:33 DEBUG   opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
23:33 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
23:33 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
23:33 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 25
23:33 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:33 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 25 elements
23:33 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:33 INFO    opendrift.models.chemicaldrift:1861: partitioning: [192, 0, 308, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:33 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:33 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:33 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:33 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:33 DEBUG   opendrift:2055: ======================================================================
23:33 INFO    opendrift:2056: 2025-03-04 10:22:43.574110 - step 41 of 96 - 500 active elements (0 deactivated)
23:33 DEBUG   opendrift:2062: 0 elements scheduled.
23:33 DEBUG   opendrift:2064: ======================================================================
23:33 DEBUG   opendrift:2075:                57.683759583124164 <- latitude  -> 57.747228944890644
23:33 DEBUG   opendrift:2080:                10.618266379325584 <- longitude -> 10.86959425359604
23:33 DEBUG   opendrift:2085:                -32.845778592374415   <- z ->   0.0
23:33 DEBUG   opendrift:2086: ---------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:33 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:33 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:33 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:33 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:33 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 10:00:00 (before)
                2025-03-04 11:00:00 (after)
23:36 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:36 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:36 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:36 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:36 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:36 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:36 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 37x37x7) for time after (2025-03-04 11:00:00)
23:36 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 10:00:00) in space  (linearNDFast)
23:36 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:36 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 11:00:00) in space  (linearNDFast)
23:36 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:36 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 10:00:00, weight 0.62) and
                      after (2025-03-04 11:00:00, weight 0.38) in time
23:36 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:36 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.381744666128256 and -59.130416752941144 degrees.
23:36 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.381744666128256 and -59.130416752941144 degrees.
23:36 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:36 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:36 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:36 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:36 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:36 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:36 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:36 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:36 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:36 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:36 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:36 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:36 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:36 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:36 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:36 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:36 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:36 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:36 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:36 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:36 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:36 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:36 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0670662 (min) 0.502931 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.046387 (min) 0.358548 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.186401 (min) -0.135687 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.0159 (min) 13.1992 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.5947 (min) 4.00786 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 15.2114 (min) 34.7989 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 6.08781 (min) 7.19015 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.1963 (min) 33.5693 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000443752 (min) 0.000176354 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:36 DEBUG   opendrift:694: No elements hit coastline.
23:36 DEBUG   opendrift:733: No elements hit seafloor.
23:36 DEBUG   opendrift:1695: No elements to deactivate
23:36 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:36 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:36 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:36 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
23:36 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 2 2]
23:36 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 0 0]
23:36 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 355.   0.]
 [  0.   0.   0.   0.   0.]
 [ 99.   0.   0. 315.   0.]
 [  0.   0. 668.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:36 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:36 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:36 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:36 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:36 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.13653171128924801
23:36 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:36 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:36 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:36 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 30 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:36 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 15
23:36 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:36 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 15 elements
23:36 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:36 INFO    opendrift.models.chemicaldrift:1861: partitioning: [193, 0, 307, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:36 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:36 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:36 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:36 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:36 DEBUG   opendrift:2055: ======================================================================
23:36 INFO    opendrift:2056: 2025-03-04 10:52:43.574110 - step 42 of 96 - 500 active elements (0 deactivated)
23:36 DEBUG   opendrift:2062: 0 elements scheduled.
23:36 DEBUG   opendrift:2064: ======================================================================
23:36 DEBUG   opendrift:2075:                57.687582490231236 <- latitude  -> 57.751421170436714
23:36 DEBUG   opendrift:2080:                10.629627951524832 <- longitude -> 10.877790581652263
23:36 DEBUG   opendrift:2085:                -30.94202954310855   <- z ->   -0.04555260786852289
23:36 DEBUG   opendrift:2086: ---------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:36 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:36 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:36 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:36 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 10:00:00 (before)
                2025-03-04 11:00:00 (after)
23:36 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 10:00:00) in space  (linearNDFast)
23:36 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:36 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 11:00:00) in space  (linearNDFast)
23:36 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:36 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 10:00:00, weight 0.12) and
                      after (2025-03-04 11:00:00, weight 0.88) in time
23:36 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:36 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.370383092053274 and -59.122220431988225 degrees.
23:36 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.370383092053274 and -59.122220431988225 degrees.
23:36 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:36 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:36 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:36 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:36 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:36 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:36 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:36 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:36 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:36 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:36 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:36 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:36 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:36 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:36 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:36 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:36 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:36 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:36 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:36 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:36 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:36 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:36 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0503666 (min) 0.509654 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.056622 (min) 0.362363 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.235794 (min) -0.181613 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.0167 (min) 12.3352 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.50463 (min) 3.84957 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 15.8033 (min) 35.4138 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 6.18879 (min) 7.26493 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.5159 (min) 33.534 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000569181 (min) 0.00020462 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:36 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:36 DEBUG   opendrift:694: No elements hit coastline.
23:36 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:36 DEBUG   opendrift:1695: No elements to deactivate
23:36 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:36 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:36 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:36 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
23:36 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0]
23:36 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3]
23:36 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 356.   0.]
 [  0.   0.   0.   0.   0.]
 [101.   0.   0. 328.   0.]
 [  0.   0. 683.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:36 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:36 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:36 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:36 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:36 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.11916482514486497
23:36 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:36 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:36 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:36 DEBUG   opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 27 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 29 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:36 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:36 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
23:36 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
23:36 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 15
23:36 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:36 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 15 elements
23:36 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:36 INFO    opendrift.models.chemicaldrift:1861: partitioning: [194, 0, 306, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:36 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:36 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:36 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:36 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:36 DEBUG   opendrift:2055: ======================================================================
23:36 INFO    opendrift:2056: 2025-03-04 11:22:43.574110 - step 43 of 96 - 500 active elements (0 deactivated)
23:36 DEBUG   opendrift:2062: 0 elements scheduled.
23:36 DEBUG   opendrift:2064: ======================================================================
23:36 DEBUG   opendrift:2075:                57.69190586560473 <- latitude  -> 57.75488249195532
23:36 DEBUG   opendrift:2080:                10.636336946976849 <- longitude -> 10.88246941053084
23:36 DEBUG   opendrift:2085:                -33.27949142456055   <- z ->   -0.10232039272327126
23:36 DEBUG   opendrift:2086: ---------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:36 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:36 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:36 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:36 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:36 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 11:00:00 (before)
                2025-03-04 12:00:00 (after)
23:38 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:38 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:38 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:38 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:38 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:38 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:38 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 37x38x7) for time after (2025-03-04 12:00:00)
23:38 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 11:00:00) in space  (linearNDFast)
23:38 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:38 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 12:00:00) in space  (linearNDFast)
23:38 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:38 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 11:00:00, weight 0.62) and
                      after (2025-03-04 12:00:00, weight 0.38) in time
23:38 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:38 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.363674098507744 and -59.117541597774334 degrees.
23:38 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.363674098507744 and -59.117541597774334 degrees.
23:38 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:38 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:38 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:38 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:38 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:38 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:38 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:38 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:38 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:38 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:38 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:38 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:38 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:38 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:38 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:38 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:38 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:38 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:38 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:38 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:38 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0499543 (min) 0.522175 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0558672 (min) 0.364656 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.28329 (min) -0.228115 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.1713 (min) 12.2421 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.24028 (min) 3.73231 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 16.006 (min) 36.1258 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 6.16294 (min) 7.14348 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.3797 (min) 33.5204 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000572567 (min) 0.000207834 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:38 DEBUG   opendrift:694: No elements hit coastline.
23:38 DEBUG   opendrift:733: No elements hit seafloor.
23:38 DEBUG   opendrift:1695: No elements to deactivate
23:38 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:38 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:38 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:38 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
23:38 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 2 0]
23:38 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 0 3]
23:38 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 358.   0.]
 [  0.   0.   0.   0.   0.]
 [104.   0.   0. 342.   0.]
 [  0.   0. 698.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:38 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:38 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:38 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.11836800791000882
23:38 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:38 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:38 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:38 DEBUG   opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 26 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 28 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:38 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9
23:38 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements
23:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:38 INFO    opendrift.models.chemicaldrift:1861: partitioning: [195, 0, 305, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:38 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:38 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:38 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:38 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:38 DEBUG   opendrift:2055: ======================================================================
23:38 INFO    opendrift:2056: 2025-03-04 11:52:43.574110 - step 44 of 96 - 500 active elements (0 deactivated)
23:38 DEBUG   opendrift:2062: 0 elements scheduled.
23:38 DEBUG   opendrift:2064: ======================================================================
23:38 DEBUG   opendrift:2075:                57.69682434525529 <- latitude  -> 57.75862067034556
23:38 DEBUG   opendrift:2080:                10.64397067626048 <- longitude -> 10.889128632828797
23:38 DEBUG   opendrift:2085:                -33.94041425384882   <- z ->   -0.01781283444777859
23:38 DEBUG   opendrift:2086: ---------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:38 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:38 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:38 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:38 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 11:00:00 (before)
                2025-03-04 12:00:00 (after)
23:38 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 11:00:00) in space  (linearNDFast)
23:38 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:38 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 12:00:00) in space  (linearNDFast)
23:38 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:38 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 11:00:00, weight 0.12) and
                      after (2025-03-04 12:00:00, weight 0.88) in time
23:38 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:38 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.3560403731837 and -59.11088237954852 degrees.
23:38 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.3560403731837 and -59.11088237954852 degrees.
23:38 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:38 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:38 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:38 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:38 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:38 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:38 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:38 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:38 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:38 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:38 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:38 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:38 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:38 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:38 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:38 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:38 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:38 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:38 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:38 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:38 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0498929 (min) 0.539936 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.125437 (min) 0.367584 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.330058 (min) -0.274356 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.4443 (min) 12.4328 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.95755 (min) 3.63625 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 16.2635 (min) 38.1181 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 6.14864 (min) 7.12913 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.6272 (min) 33.4476 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000718176 (min) 0.000198218 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:38 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:38 DEBUG   opendrift:694: No elements hit coastline.
23:38 DEBUG   opendrift:733: No elements hit seafloor.
23:38 DEBUG   opendrift:1695: No elements to deactivate
23:38 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:38 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:38 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:38 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
23:38 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 2 0 2 0]
23:38 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0 3 0 3]
23:38 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 361.   0.]
 [  0.   0.   0.   0.   0.]
 [108.   0.   0. 349.   0.]
 [  0.   0. 707.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:38 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:38 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:38 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12125718618665464
23:38 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:38 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:38 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:38 DEBUG   opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:38 DEBUG   opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
23:38 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:38 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:38 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 11
23:38 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 11 elements
23:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:38 INFO    opendrift.models.chemicaldrift:1861: partitioning: [196, 0, 304, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:38 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:38 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:38 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:38 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
23:38 DEBUG   opendrift:2055: ======================================================================
23:38 INFO    opendrift:2056: 2025-03-04 12:22:43.574110 - step 45 of 96 - 500 active elements (0 deactivated)
23:38 DEBUG   opendrift:2062: 0 elements scheduled.
23:38 DEBUG   opendrift:2064: ======================================================================
23:38 DEBUG   opendrift:2075:                57.700956733800595 <- latitude  -> 57.76158782209254
23:38 DEBUG   opendrift:2080:                10.658537610807144 <- longitude -> 10.896159668885096
23:38 DEBUG   opendrift:2085:                -34.20086258462777   <- z ->   -0.041949893784286374
23:38 DEBUG   opendrift:2086: ---------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:38 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:38 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:38 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:38 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:38 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 12:00:00 (before)
                2025-03-04 13:00:00 (after)
23:40 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:40 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:40 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:40 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:40 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:40 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:40 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 36x37x7) for time after (2025-03-04 13:00:00)
23:40 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 12:00:00) in space  (linearNDFast)
23:40 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:40 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 13:00:00) in space  (linearNDFast)
23:40 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:40 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 12:00:00, weight 0.62) and
                      after (2025-03-04 13:00:00, weight 0.38) in time
23:40 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:40 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.341473430762235 and -59.103851329483966 degrees.
23:40 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.341473430762235 and -59.103851329483966 degrees.
23:40 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:40 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:40 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:40 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:40 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:40 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:40 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:40 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:40 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:40 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:40 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:40 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:40 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:40 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:40 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:40 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:40 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:40 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:40 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:40 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:40 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:40 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:40 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:40 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:40 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:40 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:40 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:40 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0236271 (min) 0.542143 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0905391 (min) 0.360191 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.358741 (min) -0.3033 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.3287 (min) 12.399 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.26938 (min) 3.90739 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 17.0971 (min) 40.6135 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 6.1684 (min) 7.23476 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.3516 (min) 33.4945 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.00075623 (min) 0.000206544 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:40 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:40 DEBUG   opendrift:694: No elements hit coastline.
23:40 DEBUG   opendrift:733: No elements hit seafloor.
23:40 DEBUG   opendrift:1695: No elements to deactivate
23:40 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:40 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:40 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:40 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
23:40 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2]
23:40 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0]
23:40 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 363.   0.]
 [  0.   0.   0.   0.   0.]
 [109.   0.   0. 357.   0.]
 [  0.   0. 718.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:40 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:40 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:40 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12212961876385386
23:40 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:40 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:40 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:40 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:40 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:40 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:40 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:40 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:40 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:40 DEBUG   opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:40 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:40 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:40 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:40 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:40 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:40 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:40 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:40 DEBUG   opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:40 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:40 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:40 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:40 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:40 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:40 DEBUG   opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:40 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:40 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:40 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:40 DEBUG   opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:40 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:40 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:40 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:40 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:40 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:40 DEBUG   opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
23:40 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
23:41 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 14
23:41 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:41 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 14 elements
23:41 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:41 INFO    opendrift.models.chemicaldrift:1861: partitioning: [195, 0, 305, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:41 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:41 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:41 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:41 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
23:41 DEBUG   opendrift:2055: ======================================================================
23:41 INFO    opendrift:2056: 2025-03-04 12:52:43.574110 - step 46 of 96 - 500 active elements (0 deactivated)
23:41 DEBUG   opendrift:2062: 0 elements scheduled.
23:41 DEBUG   opendrift:2064: ======================================================================
23:41 DEBUG   opendrift:2075:                57.704622512490985 <- latitude  -> 57.764597282631335
23:41 DEBUG   opendrift:2080:                10.669080008001293 <- longitude -> 10.902713649699248
23:41 DEBUG   opendrift:2085:                -37.3736796907094   <- z ->   -0.05308247368505725
23:41 DEBUG   opendrift:2086: ---------------------------------
23:41 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:41 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:41 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:41 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:41 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:41 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:41 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:41 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 12:00:00 (before)
                2025-03-04 13:00:00 (after)
23:41 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 12:00:00) in space  (linearNDFast)
23:41 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:41 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 13:00:00) in space  (linearNDFast)
23:41 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:41 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 12:00:00, weight 0.12) and
                      after (2025-03-04 13:00:00, weight 0.88) in time
23:41 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:41 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.33093102783497 and -59.09729735185582 degrees.
23:41 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.33093102783497 and -59.09729735185582 degrees.
23:41 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:41 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:41 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:41 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:41 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:41 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:41 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:41 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:41 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:41 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:41 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:41 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:41 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:41 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:41 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:41 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:41 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:41 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:41 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:41 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:41 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:41 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:41 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:41 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:41 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:41 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:41 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:41 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:41 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:41 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.00359723 (min) 0.552718 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0676184 (min) 0.354263 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.380764 (min) -0.326706 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.1241 (min) 12.2752 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.4895 (min) 4.25413 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 17.301 (min) 43.4126 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 6.08581 (min) 7.14938 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.4072 (min) 33.4408 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000957715 (min) 0.000351202 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:41 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:41 DEBUG   opendrift:694: No elements hit coastline.
23:41 DEBUG   opendrift:733: No elements hit seafloor.
23:41 DEBUG   opendrift:1695: No elements to deactivate
23:41 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:41 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:41 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:41 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
23:41 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2]
23:41 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0]
23:41 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 363.   0.]
 [  0.   0.   0.   0.   0.]
 [112.   0.   0. 369.   0.]
 [  0.   0. 732.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:41 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:41 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:41 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:41 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:41 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12153606409880165
23:41 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:41 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:41 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:41 DEBUG   opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:41 DEBUG   opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
23:41 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:41 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:41 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7
23:41 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:41 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 7 elements
23:41 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:41 INFO    opendrift.models.chemicaldrift:1861: partitioning: [198, 0, 302, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:41 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:41 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:41 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:41 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
23:41 DEBUG   opendrift:2055: ======================================================================
23:41 INFO    opendrift:2056: 2025-03-04 13:22:43.574110 - step 47 of 96 - 500 active elements (0 deactivated)
23:41 DEBUG   opendrift:2062: 0 elements scheduled.
23:41 DEBUG   opendrift:2064: ======================================================================
23:41 DEBUG   opendrift:2075:                57.70953414173353 <- latitude  -> 57.7668744471116
23:41 DEBUG   opendrift:2080:                10.676062132072547 <- longitude -> 10.916431712077204
23:41 DEBUG   opendrift:2085:                -38.690178551021994   <- z ->   0.0
23:41 DEBUG   opendrift:2086: ---------------------------------
23:41 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:41 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:41 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:41 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:41 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:41 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:41 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:41 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 13:00:00 (before)
                2025-03-04 14:00:00 (after)
23:43 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:43 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:43 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:43 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:43 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:43 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:43 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 35x38x7) for time after (2025-03-04 14:00:00)
23:43 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 13:00:00) in space  (linearNDFast)
23:43 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:43 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 14:00:00) in space  (linearNDFast)
23:43 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:43 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 13:00:00, weight 0.62) and
                      after (2025-03-04 14:00:00, weight 0.38) in time
23:43 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:43 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.3239488983957 and -59.08357929841439 degrees.
23:43 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.3239488983957 and -59.08357929841439 degrees.
23:43 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:43 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:43 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:43 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:43 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:43 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:43 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:43 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:43 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:43 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:43 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:43 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:43 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:43 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:43 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:43 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:43 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:43 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:43 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:43 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:43 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:43 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:43 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: 0.0470233 (min) 0.566282 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0612232 (min) 0.336047 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.380142 (min) -0.329375 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.1512 (min) 12.1853 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.97208 (min) 4.59052 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 17.73 (min) 45.3762 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 6.03743 (min) 7.14149 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.6806 (min) 33.4414 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000954403 (min) 0.000339259 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:43 DEBUG   opendrift:694: No elements hit coastline.
23:43 DEBUG   opendrift:733: No elements hit seafloor.
23:43 DEBUG   opendrift:1695: No elements to deactivate
23:43 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:43 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:43 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:43 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
23:43 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 2 2]
23:43 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 0 0]
23:43 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 363.   0.]
 [  0.   0.   0.   0.   0.]
 [118.   0.   0. 376.   0.]
 [  0.   0. 739.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:43 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:43 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:43 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:43 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:43 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12252796736350158
23:43 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:43 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:43 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:43 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:43 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
23:43 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:43 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
23:43 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:43 INFO    opendrift.models.chemicaldrift:1861: partitioning: [204, 0, 296, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:43 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:43 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:43 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:43 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
23:43 DEBUG   opendrift:2055: ======================================================================
23:43 INFO    opendrift:2056: 2025-03-04 13:52:43.574110 - step 48 of 96 - 500 active elements (0 deactivated)
23:43 DEBUG   opendrift:2062: 0 elements scheduled.
23:43 DEBUG   opendrift:2064: ======================================================================
23:43 DEBUG   opendrift:2075:                57.71164533521338 <- latitude  -> 57.76921037212396
23:43 DEBUG   opendrift:2080:                10.686915567173841 <- longitude -> 10.920706825484972
23:43 DEBUG   opendrift:2085:                -39.33575601861778   <- z ->   -0.2883718690230739
23:43 DEBUG   opendrift:2086: ---------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:43 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:43 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:43 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:43 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 13:00:00 (before)
                2025-03-04 14:00:00 (after)
23:43 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 13:00:00) in space  (linearNDFast)
23:43 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:43 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 14:00:00) in space  (linearNDFast)
23:43 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:43 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 13:00:00, weight 0.12) and
                      after (2025-03-04 14:00:00, weight 0.88) in time
23:43 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:43 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.31309545171568 and -59.07930417366489 degrees.
23:43 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.31309545171568 and -59.07930417366489 degrees.
23:43 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:43 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:43 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:43 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:43 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:43 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:43 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:43 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:43 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:43 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:43 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:43 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:43 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:43 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:43 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:43 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:43 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:43 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:43 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:43 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:43 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:43 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:43 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: 0.0714539 (min) 0.578652 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.0291425 (min) 0.331863 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.370498 (min) -0.32374 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.2759 (min) 12.1783 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 4.22865 (min) 4.93038 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 18.7466 (min) 47.2113 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 6.00227 (min) 7.13935 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.7539 (min) 33.4015 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000855166 (min) 0.000478948 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:43 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:43 DEBUG   opendrift:694: No elements hit coastline.
23:43 DEBUG   opendrift:733: No elements hit seafloor.
23:43 DEBUG   opendrift:1695: No elements to deactivate
23:43 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:43 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:43 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:43 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
23:43 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2]
23:43 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0]
23:43 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 363.   0.]
 [  0.   0.   0.   0.   0.]
 [121.   0.   0. 380.   0.]
 [  0.   0. 743.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:43 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:43 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:43 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:43 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:43 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.12465222962078344
23:43 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:43 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:43 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:43 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:43 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:43 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
23:43 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:43 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 8
23:43 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:43 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 8 elements
23:43 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:43 INFO    opendrift.models.chemicaldrift:1861: partitioning: [207, 0, 293, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:43 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:43 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:43 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:43 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
23:43 DEBUG   opendrift:2055: ======================================================================
23:43 INFO    opendrift:2056: 2025-03-04 14:22:43.574110 - step 49 of 96 - 500 active elements (0 deactivated)
23:43 DEBUG   opendrift:2062: 0 elements scheduled.
23:43 DEBUG   opendrift:2064: ======================================================================
23:43 DEBUG   opendrift:2075:                57.7135414085301 <- latitude  -> 57.77132806730119
23:43 DEBUG   opendrift:2080:                10.694061964755104 <- longitude -> 10.927302503217625
23:43 DEBUG   opendrift:2085:                -39.840118408203125   <- z ->   0.0
23:43 DEBUG   opendrift:2086: ---------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:43 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:43 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:43 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:43 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:43 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 14:00:00 (before)
                2025-03-04 15:00:00 (after)
23:45 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:45 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:45 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:45 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:45 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:45 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:45 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 34x38x7) for time after (2025-03-04 15:00:00)
23:45 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 14:00:00) in space  (linearNDFast)
23:45 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:45 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 15:00:00) in space  (linearNDFast)
23:45 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:45 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 14:00:00, weight 0.62) and
                      after (2025-03-04 15:00:00, weight 0.38) in time
23:45 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:45 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.305949047796105 and -59.072708490510855 degrees.
23:45 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.305949047796105 and -59.072708490510855 degrees.
23:45 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:45 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:45 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:45 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:45 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:45 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:45 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:45 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:45 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:45 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:45 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:45 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:45 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:45 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:45 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:45 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:45 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:45 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:45 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:45 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:45 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:45 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:45 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: 0.107876 (min) 0.595005 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: 0.000916964 (min) 0.333148 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.334554 (min) -0.29276 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.81971 (min) 11.8732 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 4.01714 (min) 4.77621 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 19.6132 (min) 48.56 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.93696 (min) 7.1037 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.9351 (min) 33.3904 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000787706 (min) 0.000563429 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:45 DEBUG   opendrift:694: No elements hit coastline.
23:45 DEBUG   opendrift:733: No elements hit seafloor.
23:45 DEBUG   opendrift:1695: No elements to deactivate
23:45 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:45 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:45 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:45 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
23:45 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 2 2]
23:45 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 0 0]
23:45 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 363.   0.]
 [  0.   0.   0.   0.   0.]
 [127.   0.   0. 388.   0.]
 [  0.   0. 751.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:45 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:45 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:45 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:45 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:45 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.11809924122862428
23:45 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:45 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:45 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:45 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:45 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7
23:45 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:45 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 7 elements
23:45 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:45 INFO    opendrift.models.chemicaldrift:1861: partitioning: [213, 0, 287, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:45 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:45 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:45 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:45 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:45 DEBUG   opendrift:2055: ======================================================================
23:45 INFO    opendrift:2056: 2025-03-04 14:52:43.574110 - step 50 of 96 - 500 active elements (0 deactivated)
23:45 DEBUG   opendrift:2062: 0 elements scheduled.
23:45 DEBUG   opendrift:2064: ======================================================================
23:45 DEBUG   opendrift:2075:                57.71443473942219 <- latitude  -> 57.77279109116291
23:45 DEBUG   opendrift:2080:                10.705526436895635 <- longitude -> 10.934473473119391
23:45 DEBUG   opendrift:2085:                -40.592540566020475   <- z ->   0.0
23:45 DEBUG   opendrift:2086: ---------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:45 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:45 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:45 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:45 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 14:00:00 (before)
                2025-03-04 15:00:00 (after)
23:45 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 14:00:00) in space  (linearNDFast)
23:45 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:45 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 15:00:00) in space  (linearNDFast)
23:45 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:45 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 14:00:00, weight 0.12) and
                      after (2025-03-04 15:00:00, weight 0.88) in time
23:45 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:45 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.294484585087496 and -59.06553751043146 degrees.
23:45 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.294484585087496 and -59.06553751043146 degrees.
23:45 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:45 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:45 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:45 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:45 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:45 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:45 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:45 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:45 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:45 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:45 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:45 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:45 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:45 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:45 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:45 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:45 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:45 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:45 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:45 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:45 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:45 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:45 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: 0.119208 (min) 0.609217 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.0485111 (min) 0.33573 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.289616 (min) -0.254369 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.21577 (min) 11.4865 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.63712 (min) 4.45901 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 21.0669 (min) 49.2719 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.85474 (min) 7.10508 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.7777 (min) 33.2811 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000557254 (min) 0.000757887 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:45 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:45 DEBUG   opendrift:694: No elements hit coastline.
23:45 DEBUG   opendrift:733: No elements hit seafloor.
23:45 DEBUG   opendrift:1695: No elements to deactivate
23:45 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:45 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:45 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:45 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 0
23:45 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:45 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.10942750515406137
23:45 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:45 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:45 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:45 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:45 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:45 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:45 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:45 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
23:45 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:45 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
23:45 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:45 INFO    opendrift.models.chemicaldrift:1861: partitioning: [213, 0, 287, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:45 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:45 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:45 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:45 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:45 DEBUG   opendrift:2055: ======================================================================
23:45 INFO    opendrift:2056: 2025-03-04 15:22:43.574110 - step 51 of 96 - 500 active elements (0 deactivated)
23:45 DEBUG   opendrift:2062: 0 elements scheduled.
23:45 DEBUG   opendrift:2064: ======================================================================
23:45 DEBUG   opendrift:2075:                57.71820077281403 <- latitude  -> 57.7732608439026
23:45 DEBUG   opendrift:2080:                10.713644143231573 <- longitude -> 10.944811315080502
23:45 DEBUG   opendrift:2085:                -41.52970934124088   <- z ->   0.0
23:45 DEBUG   opendrift:2086: ---------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:45 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:45 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:45 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:45 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:45 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 15:00:00 (before)
                2025-03-04 16:00:00 (after)
23:47 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:47 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:47 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:47 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:47 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:47 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:47 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 35x37x7) for time after (2025-03-04 16:00:00)
23:47 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 15:00:00) in space  (linearNDFast)
23:47 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:47 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 16:00:00) in space  (linearNDFast)
23:47 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:47 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 15:00:00, weight 0.62) and
                      after (2025-03-04 16:00:00, weight 0.38) in time
23:47 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:47 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.286366871480794 and -59.055199681275454 degrees.
23:47 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.286366871480794 and -59.055199681275454 degrees.
23:47 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:47 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:47 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:47 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:47 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:47 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:47 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:47 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:47 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:47 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:47 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:47 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:47 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:47 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:47 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:47 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:47 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:47 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:47 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:47 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:47 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:47 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:47 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: 0.140126 (min) 0.601339 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.0862621 (min) 0.318187 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.233748 (min) -0.20081 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 8.91581 (min) 10.9013 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.36113 (min) 3.85454 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 22.2257 (min) 49.3131 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.84451 (min) 7.13707 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.952 (min) 33.2887 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000529344 (min) 0.00066578 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:47 DEBUG   opendrift:694: No elements hit coastline.
23:47 DEBUG   opendrift:733: No elements hit seafloor.
23:47 DEBUG   opendrift:1695: No elements to deactivate
23:47 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:47 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:47 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:47 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
23:47 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2]
23:47 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0]
23:47 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 363.   0.]
 [  0.   0.   0.   0.   0.]
 [130.   0.   0. 401.   0.]
 [  0.   0. 764.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:47 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:47 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:47 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:47 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:47 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.09598534406872157
23:47 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:47 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:47 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:47 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
23:47 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:47 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
23:47 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:47 INFO    opendrift.models.chemicaldrift:1861: partitioning: [216, 0, 284, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:47 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:47 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:47 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:47 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:47 DEBUG   opendrift:2055: ======================================================================
23:47 INFO    opendrift:2056: 2025-03-04 15:52:43.574110 - step 52 of 96 - 500 active elements (0 deactivated)
23:47 DEBUG   opendrift:2062: 0 elements scheduled.
23:47 DEBUG   opendrift:2064: ======================================================================
23:47 DEBUG   opendrift:2075:                57.71947569905386 <- latitude  -> 57.7734373853323
23:47 DEBUG   opendrift:2080:                10.723941300275134 <- longitude -> 10.962605895096065
23:47 DEBUG   opendrift:2085:                -42.098491318597766   <- z ->   0.0
23:47 DEBUG   opendrift:2086: ---------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:47 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:47 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:47 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:47 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 15:00:00 (before)
                2025-03-04 16:00:00 (after)
23:47 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 15:00:00) in space  (linearNDFast)
23:47 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:47 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 16:00:00) in space  (linearNDFast)
23:47 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:47 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 15:00:00, weight 0.12) and
                      after (2025-03-04 16:00:00, weight 0.88) in time
23:47 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:47 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.27606971862434 and -59.03740511104093 degrees.
23:47 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.27606971862434 and -59.03740511104093 degrees.
23:47 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:47 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:47 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:47 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:47 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:47 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:47 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:47 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:47 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:47 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:47 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:47 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:47 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:47 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:47 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:47 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:47 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:47 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:47 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:47 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:47 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:47 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:47 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: 0.130117 (min) 0.61712 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.13224 (min) 0.299916 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.174644 (min) -0.141815 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 8.46913 (min) 10.2101 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.65354 (min) 3.51055 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 23.603 (min) 49.1164 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.82616 (min) 7.1109 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.9295 (min) 33.2278 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000590103 (min) 0.000836005 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:47 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:47 DEBUG   opendrift:694: No elements hit coastline.
23:47 DEBUG   opendrift:733: No elements hit seafloor.
23:47 DEBUG   opendrift:1695: No elements to deactivate
23:47 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:47 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:47 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:47 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
23:47 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2]
23:47 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0]
23:47 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 363.   0.]
 [  0.   0.   0.   0.   0.]
 [133.   0.   0. 406.   0.]
 [  0.   0. 769.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:47 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:47 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:47 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:47 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:47 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.08161136104728371
23:47 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:47 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:47 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:47 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:47 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:47 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:47 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2
23:47 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:47 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
23:47 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:47 INFO    opendrift.models.chemicaldrift:1861: partitioning: [219, 0, 281, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:47 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:47 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:47 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:47 DEBUG   opendrift:733: No elements hit seafloor.
23:47 DEBUG   opendrift:2055: ======================================================================
23:47 INFO    opendrift:2056: 2025-03-04 16:22:43.574110 - step 53 of 96 - 500 active elements (0 deactivated)
23:47 DEBUG   opendrift:2062: 0 elements scheduled.
23:47 DEBUG   opendrift:2064: ======================================================================
23:47 DEBUG   opendrift:2075:                57.71990731079524 <- latitude  -> 57.77302795659405
23:47 DEBUG   opendrift:2080:                10.729878488719315 <- longitude -> 10.971436459607197
23:47 DEBUG   opendrift:2085:                -42.068858277701246   <- z ->   0.0
23:47 DEBUG   opendrift:2086: ---------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:47 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:47 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:47 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:47 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:47 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 16:00:00 (before)
                2025-03-04 17:00:00 (after)
23:49 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:49 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:49 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:49 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:49 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:49 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:49 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 35x36x7) for time after (2025-03-04 17:00:00)
23:49 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 16:00:00) in space  (linearNDFast)
23:49 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:49 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 17:00:00) in space  (linearNDFast)
23:49 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:49 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 16:00:00, weight 0.62) and
                      after (2025-03-04 17:00:00, weight 0.38) in time
23:49 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:49 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.27013252748881 and -59.028574534037666 degrees.
23:49 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.27013252748881 and -59.028574534037666 degrees.
23:49 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:49 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:49 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:49 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:49 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:49 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:49 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:49 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:49 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:49 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:49 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:49 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:49 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:49 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:49 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:49 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:49 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:49 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:49 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:49 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:49 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: 0.148062 (min) 0.596081 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.166179 (min) 0.279216 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.121952 (min) -0.0886674 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 8.65441 (min) 10.4299 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 2.88457 (min) 3.70811 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 24.2832 (min) 48.6204 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.78779 (min) 7.02734 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.2328 (min) 33.1115 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000619509 (min) 0.000728803 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:49 DEBUG   opendrift:694: No elements hit coastline.
23:49 DEBUG   opendrift:733: No elements hit seafloor.
23:49 DEBUG   opendrift:1695: No elements to deactivate
23:49 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:49 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:49 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:49 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
23:49 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2]
23:49 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0]
23:49 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 364.   0.]
 [  0.   0.   0.   0.   0.]
 [136.   0.   0. 408.   0.]
 [  0.   0. 771.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:49 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:49 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:49 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:49 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:49 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.08718453446179976
23:49 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:49 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:49 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:49 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
23:49 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:49 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
23:49 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:49 INFO    opendrift.models.chemicaldrift:1861: partitioning: [221, 0, 279, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:49 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:49 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:49 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:49 DEBUG   opendrift:733: No elements hit seafloor.
23:49 DEBUG   opendrift:2055: ======================================================================
23:49 INFO    opendrift:2056: 2025-03-04 16:52:43.574110 - step 54 of 96 - 500 active elements (0 deactivated)
23:49 DEBUG   opendrift:2062: 0 elements scheduled.
23:49 DEBUG   opendrift:2064: ======================================================================
23:49 DEBUG   opendrift:2075:                57.721025518512675 <- latitude  -> 57.77225299748227
23:49 DEBUG   opendrift:2080:                10.737422093314471 <- longitude -> 10.981011781770123
23:49 DEBUG   opendrift:2085:                -42.410507739244785   <- z ->   0.0
23:49 DEBUG   opendrift:2086: ---------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:49 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:49 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:49 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:49 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 16:00:00 (before)
                2025-03-04 17:00:00 (after)
23:49 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 16:00:00) in space  (linearNDFast)
23:49 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:49 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 17:00:00) in space  (linearNDFast)
23:49 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:49 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 16:00:00, weight 0.12) and
                      after (2025-03-04 17:00:00, weight 0.88) in time
23:49 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:49 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.26258893194894 and -59.01899920180419 degrees.
23:49 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.26258893194894 and -59.01899920180419 degrees.
23:49 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:49 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:49 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:49 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:49 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:49 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:49 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:49 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:49 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:49 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:49 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:49 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:49 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:49 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:49 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:49 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:49 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:49 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:49 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:49 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:49 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: 0.102685 (min) 0.591093 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.205892 (min) 0.26413 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0709665 (min) -0.0378342 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.0102 (min) 10.968 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 3.30067 (min) 4.32302 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 25.2274 (min) 47.9377 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.69946 (min) 7.01667 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.3848 (min) 33.1709 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000620818 (min) 0.000656196 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:49 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:49 DEBUG   opendrift:694: No elements hit coastline.
23:49 DEBUG   opendrift:733: No elements hit seafloor.
23:49 DEBUG   opendrift:1695: No elements to deactivate
23:49 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:49 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:49 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:49 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
23:49 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 2 2]
23:49 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0 0]
23:49 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 365.   0.]
 [  0.   0.   0.   0.   0.]
 [140.   0.   0. 411.   0.]
 [  0.   0. 775.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:49 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:49 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:49 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:49 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:49 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.10043833856961186
23:49 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:49 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:49 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:49 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:49 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:49 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:49 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
23:49 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:49 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
23:49 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:49 INFO    opendrift.models.chemicaldrift:1861: partitioning: [224, 0, 276, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:49 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:49 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:49 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:49 DEBUG   opendrift:733: No elements hit seafloor.
23:49 DEBUG   opendrift:2055: ======================================================================
23:49 INFO    opendrift:2056: 2025-03-04 17:22:43.574110 - step 55 of 96 - 500 active elements (0 deactivated)
23:49 DEBUG   opendrift:2062: 0 elements scheduled.
23:49 DEBUG   opendrift:2064: ======================================================================
23:49 DEBUG   opendrift:2075:                57.72224544494356 <- latitude  -> 57.77201535688483
23:49 DEBUG   opendrift:2080:                10.741364551895245 <- longitude -> 10.984521739368272
23:49 DEBUG   opendrift:2085:                -41.85380700086413   <- z ->   0.0
23:49 DEBUG   opendrift:2086: ---------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:49 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:49 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:49 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:49 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:49 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 17:00:00 (before)
                2025-03-04 18:00:00 (after)
23:51 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:51 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:51 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:51 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:51 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:51 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:51 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 36x35x7) for time after (2025-03-04 18:00:00)
23:51 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 17:00:00) in space  (linearNDFast)
23:51 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:51 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 18:00:00) in space  (linearNDFast)
23:51 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:51 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 17:00:00, weight 0.62) and
                      after (2025-03-04 18:00:00, weight 0.38) in time
23:51 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:51 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.25864646826345 and -59.015489238714515 degrees.
23:51 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.25864646826345 and -59.015489238714515 degrees.
23:51 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:51 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:51 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:51 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:51 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:51 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:51 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:51 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:51 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:51 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:51 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:51 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:51 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:51 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:51 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:51 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:51 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:51 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:51 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:51 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:51 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:51 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:51 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: 0.102761 (min) 0.573541 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.222522 (min) 0.245941 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0349697 (min) -0.0021871 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 8.86493 (min) 10.3995 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 4.11564 (min) 5.01445 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 25.5032 (min) 47.4534 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.708 (min) 6.86906 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.1097 (min) 33.1421 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000621891 (min) 0.000546649 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:51 DEBUG   opendrift:694: No elements hit coastline.
23:51 DEBUG   opendrift:733: No elements hit seafloor.
23:51 DEBUG   opendrift:1695: No elements to deactivate
23:51 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:51 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:51 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:51 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 1
23:51 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2]
23:51 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0]
23:51 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 365.   0.]
 [  0.   0.   0.   0.   0.]
 [141.   0.   0. 415.   0.]
 [  0.   0. 780.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:51 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:51 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:51 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:51 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:51 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.09632555309148508
23:51 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:51 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:51 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
23:51 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:51 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
23:51 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:51 INFO    opendrift.models.chemicaldrift:1861: partitioning: [225, 0, 275, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:51 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:51 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:51 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:51 DEBUG   opendrift:733: No elements hit seafloor.
23:51 DEBUG   opendrift:2055: ======================================================================
23:51 INFO    opendrift:2056: 2025-03-04 17:52:43.574110 - step 56 of 96 - 500 active elements (0 deactivated)
23:51 DEBUG   opendrift:2062: 0 elements scheduled.
23:51 DEBUG   opendrift:2064: ======================================================================
23:51 DEBUG   opendrift:2075:                57.720045251611815 <- latitude  -> 57.77205714414515
23:51 DEBUG   opendrift:2080:                10.749673764667682 <- longitude -> 11.001336389444754
23:51 DEBUG   opendrift:2085:                -41.93633708976852   <- z ->   0.0
23:51 DEBUG   opendrift:2086: ---------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:51 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:51 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:51 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:51 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 17:00:00 (before)
                2025-03-04 18:00:00 (after)
23:51 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 17:00:00) in space  (linearNDFast)
23:51 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:51 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 18:00:00) in space  (linearNDFast)
23:51 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:51 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 17:00:00, weight 0.12) and
                      after (2025-03-04 18:00:00, weight 0.88) in time
23:51 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:51 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.25033725953077 and -58.99867459785099 degrees.
23:51 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.25033725953077 and -58.99867459785099 degrees.
23:51 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:51 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:51 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:51 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:51 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:51 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:51 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:51 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:51 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:51 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:51 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:51 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:51 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:51 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:51 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:51 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:51 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:51 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:51 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:51 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:51 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:51 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:51 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: 0.0900574 (min) 0.557695 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.249993 (min) 0.233953 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.00322632 (min) 0.0295769 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 8.42912 (min) 9.41696 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 5.14485 (min) 5.7193 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 26.5985 (min) 47.1228 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.67118 (min) 6.89563 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.2085 (min) 33.1587 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000690605 (min) 0.00054523 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:51 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:51 DEBUG   opendrift:694: No elements hit coastline.
23:51 DEBUG   opendrift:733: No elements hit seafloor.
23:51 DEBUG   opendrift:1695: No elements to deactivate
23:51 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:51 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:51 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:51 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 1
23:51 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0]
23:51 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3]
23:51 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 366.   0.]
 [  0.   0.   0.   0.   0.]
 [141.   0.   0. 418.   0.]
 [  0.   0. 783.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:51 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:51 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:51 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:51 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:51 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.08758862358561638
23:51 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:51 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:51 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:51 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:51 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:51 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
23:51 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:51 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
23:51 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:51 INFO    opendrift.models.chemicaldrift:1861: partitioning: [224, 0, 276, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:51 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:51 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:51 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:51 DEBUG   opendrift:733: No elements hit seafloor.
23:51 DEBUG   opendrift:2055: ======================================================================
23:51 INFO    opendrift:2056: 2025-03-04 18:22:43.574110 - step 57 of 96 - 500 active elements (0 deactivated)
23:51 DEBUG   opendrift:2062: 0 elements scheduled.
23:51 DEBUG   opendrift:2064: ======================================================================
23:51 DEBUG   opendrift:2075:                57.721572238382834 <- latitude  -> 57.77212679477891
23:51 DEBUG   opendrift:2080:                10.756655216321185 <- longitude -> 11.016540562257044
23:51 DEBUG   opendrift:2085:                -41.92963906828643   <- z ->   0.0
23:51 DEBUG   opendrift:2086: ---------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:51 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:51 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:51 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:51 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:51 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 18:00:00 (before)
                2025-03-04 19:00:00 (after)
23:53 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:53 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:53 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:53 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:53 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:53 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:53 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 37x34x7) for time after (2025-03-04 19:00:00)
23:53 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 18:00:00) in space  (linearNDFast)
23:53 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:53 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 19:00:00) in space  (linearNDFast)
23:53 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:53 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 18:00:00, weight 0.62) and
                      after (2025-03-04 19:00:00, weight 0.38) in time
23:53 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:53 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.243355796733375 and -58.983470437291956 degrees.
23:53 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.243355796733375 and -58.983470437291956 degrees.
23:53 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:53 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:53 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:53 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:53 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:53 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:53 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:53 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:53 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:53 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:53 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:53 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:53 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:53 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:53 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:53 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:53 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:53 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:53 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:53 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:53 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:53 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:53 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: 0.0304789 (min) 0.512702 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.27022 (min) 0.229499 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.00940691 (min) 0.041261 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 7.95722 (min) 8.9238 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 6.04951 (min) 6.36053 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 26.8697 (min) 46.892 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.60763 (min) 6.96795 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.2957 (min) 33.1928 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000686178 (min) 0.000580664 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:53 DEBUG   opendrift:694: No elements hit coastline.
23:53 DEBUG   opendrift:733: No elements hit seafloor.
23:53 DEBUG   opendrift:1695: No elements to deactivate
23:53 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:53 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:53 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:53 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
23:53 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 0 2]
23:53 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 3 0]
23:53 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 368.   0.]
 [  0.   0.   0.   0.   0.]
 [144.   0.   0. 418.   0.]
 [  0.   0. 784.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:53 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:53 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:53 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:53 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:53 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.08655714389045302
23:53 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:53 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:53 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:53 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2
23:53 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:53 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
23:53 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:53 INFO    opendrift.models.chemicaldrift:1861: partitioning: [225, 0, 275, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:53 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:53 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:53 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:53 DEBUG   opendrift:733: No elements hit seafloor.
23:53 DEBUG   opendrift:2055: ======================================================================
23:53 INFO    opendrift:2056: 2025-03-04 18:52:43.574110 - step 58 of 96 - 500 active elements (0 deactivated)
23:53 DEBUG   opendrift:2062: 0 elements scheduled.
23:53 DEBUG   opendrift:2064: ======================================================================
23:53 DEBUG   opendrift:2075:                57.717204304047456 <- latitude  -> 57.77146140384555
23:53 DEBUG   opendrift:2080:                10.757632057790344 <- longitude -> 11.022391402041714
23:53 DEBUG   opendrift:2085:                -42.35317409366062   <- z ->   0.0
23:53 DEBUG   opendrift:2086: ---------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:53 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:53 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:53 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:53 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 18:00:00 (before)
                2025-03-04 19:00:00 (after)
23:53 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 18:00:00) in space  (linearNDFast)
23:53 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:53 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 19:00:00) in space  (linearNDFast)
23:53 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:53 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 18:00:00, weight 0.12) and
                      after (2025-03-04 19:00:00, weight 0.88) in time
23:53 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:53 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.2423789681238 and -58.977619586879854 degrees.
23:53 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.2423789681238 and -58.977619586879854 degrees.
23:53 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:53 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:53 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:53 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:53 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:53 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:53 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:53 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:53 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:53 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:53 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:53 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:53 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:53 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:53 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:53 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:53 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:53 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:53 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:53 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:53 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:53 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:53 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0348304 (min) 0.484871 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.253433 (min) 0.219959 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.0159504 (min) 0.0461454 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 7.48905 (min) 8.64676 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 6.86252 (min) 6.99806 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 26.8732 (min) 46.5222 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.54994 (min) 6.92766 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.4953 (min) 33.32 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000704685 (min) 0.000607063 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:53 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:53 DEBUG   opendrift:694: No elements hit coastline.
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift:1695: No elements to deactivate
23:53 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:53 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:53 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:53 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
23:53 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 2 0 2 0]
23:53 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 0 3 0 3]
23:53 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 371.   0.]
 [  0.   0.   0.   0.   0.]
 [148.   0.   0. 418.   0.]
 [  0.   0. 786.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:53 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:53 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:53 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:53 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:53 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.0893275505102165
23:53 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:53 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:53 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:53 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:53 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:53 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:53 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
23:53 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:53 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
23:53 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:53 INFO    opendrift.models.chemicaldrift:1861: partitioning: [226, 0, 274, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:53 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:53 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:53 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:53 DEBUG   opendrift:733: No elements hit seafloor.
23:53 DEBUG   opendrift:2055: ======================================================================
23:53 INFO    opendrift:2056: 2025-03-04 19:22:43.574110 - step 59 of 96 - 500 active elements (0 deactivated)
23:53 DEBUG   opendrift:2062: 0 elements scheduled.
23:53 DEBUG   opendrift:2064: ======================================================================
23:53 DEBUG   opendrift:2075:                57.717108440469495 <- latitude  -> 57.77076347638962
23:53 DEBUG   opendrift:2080:                10.7570596041931 <- longitude -> 11.034536571512856
23:53 DEBUG   opendrift:2085:                -41.93769904638835   <- z ->   0.0
23:53 DEBUG   opendrift:2086: ---------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:53 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:53 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:53 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:53 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:53 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 19:00:00 (before)
                2025-03-04 20:00:00 (after)
23:55 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:55 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:55 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:55 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:55 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:55 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:55 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 38x34x7) for time after (2025-03-04 20:00:00)
23:55 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 19:00:00) in space  (linearNDFast)
23:55 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:55 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 20:00:00) in space  (linearNDFast)
23:55 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:55 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 19:00:00, weight 0.62) and
                      after (2025-03-04 20:00:00, weight 0.38) in time
23:55 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:55 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.242951429184274 and -58.96547440742099 degrees.
23:55 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.242951429184274 and -58.96547440742099 degrees.
23:55 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:55 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:55 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:55 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:55 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:55 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:55 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:55 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:55 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:55 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:55 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:55 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:55 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:55 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:55 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:55 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:55 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:55 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:55 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:55 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:55 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:55 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:55 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:55 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:55 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:55 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:55 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:55 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:55 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:55 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0309919 (min) 0.501727 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.254 (min) 0.210189 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.0115298 (min) 0.0393172 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 7.72422 (min) 9.04239 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 7.0655 (min) 7.37239 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 26.7666 (min) 46.2197 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.52409 (min) 6.90814 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.963 (min) 33.2587 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000608369 (min) 0.000641751 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:55 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:55 DEBUG   opendrift:694: No elements hit coastline.
23:55 DEBUG   opendrift:733: No elements hit seafloor.
23:55 DEBUG   opendrift:1695: No elements to deactivate
23:55 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:55 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:55 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:55 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
23:55 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 0 2]
23:55 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 3 0]
23:55 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 373.   0.]
 [  0.   0.   0.   0.   0.]
 [151.   0.   0. 418.   0.]
 [  0.   0. 789.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:55 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:55 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:55 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:55 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:55 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.09675117094616398
23:55 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:55 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:55 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:55 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:55 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:55 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:55 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:55 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:55 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:55 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:55 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:55 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:55 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:55 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:55 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:55 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:55 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:55 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2
23:55 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:55 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
23:55 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:55 INFO    opendrift.models.chemicaldrift:1861: partitioning: [227, 0, 273, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:55 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:55 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:55 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:55 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:55 DEBUG   opendrift:2055: ======================================================================
23:55 INFO    opendrift:2056: 2025-03-04 19:52:43.574110 - step 60 of 96 - 500 active elements (0 deactivated)
23:55 DEBUG   opendrift:2062: 0 elements scheduled.
23:55 DEBUG   opendrift:2064: ======================================================================
23:55 DEBUG   opendrift:2075:                57.71386035258619 <- latitude  -> 57.772166813775975
23:55 DEBUG   opendrift:2080:                10.756274809217667 <- longitude -> 11.04092936916789
23:55 DEBUG   opendrift:2085:                -41.60488611020328   <- z ->   0.0
23:55 DEBUG   opendrift:2086: ---------------------------------
23:55 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:55 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:55 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:55 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:55 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:55 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:55 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:55 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 19:00:00 (before)
                2025-03-04 20:00:00 (after)
23:55 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 19:00:00) in space  (linearNDFast)
23:55 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:55 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 20:00:00) in space  (linearNDFast)
23:55 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:56 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 19:00:00, weight 0.12) and
                      after (2025-03-04 20:00:00, weight 0.88) in time
23:56 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:56 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.24373620949742 and -58.95908161065968 degrees.
23:56 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.24373620949742 and -58.95908161065968 degrees.
23:56 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:56 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:56 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:56 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:56 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:56 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:56 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:56 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:56 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:56 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:56 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:56 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:56 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:56 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:56 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:56 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:56 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:56 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:56 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:56 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:56 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:56 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:56 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:56 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:56 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:56 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:56 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:56 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:56 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:56 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.0956032 (min) 0.478586 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.272891 (min) 0.320535 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0.00381616 (min) 0.027745 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 8.10345 (min) 9.753 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 7.09946 (min) 7.68969 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 27.0507 (min) 46.5356 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.58554 (min) 6.89089 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.9058 (min) 33.3258 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000620471 (min) 0.00074336 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:56 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:56 DEBUG   opendrift:694: No elements hit coastline.
23:56 DEBUG   opendrift:733: No elements hit seafloor.
23:56 DEBUG   opendrift:1695: No elements to deactivate
23:56 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:56 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:56 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:56 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
23:56 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 0 2 2 0 2]
23:56 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 3 0 0 3 0]
23:56 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 375.   0.]
 [  0.   0.   0.   0.   0.]
 [157.   0.   0. 418.   0.]
 [  0.   0. 791.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:56 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:56 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:56 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:56 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:56 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.10659067650372349
23:56 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:56 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:56 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:56 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:56 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:56 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:56 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:56 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:56 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:56 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:56 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:56 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:56 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:56 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:56 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:56 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2
23:56 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:56 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
23:56 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:56 INFO    opendrift.models.chemicaldrift:1861: partitioning: [231, 0, 269, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:56 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:56 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:56 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:56 DEBUG   opendrift:733: No elements hit seafloor.
23:56 DEBUG   opendrift:2055: ======================================================================
23:56 INFO    opendrift:2056: 2025-03-04 20:22:43.574110 - step 61 of 96 - 500 active elements (0 deactivated)
23:56 DEBUG   opendrift:2062: 0 elements scheduled.
23:56 DEBUG   opendrift:2064: ======================================================================
23:56 DEBUG   opendrift:2075:                57.71596483971143 <- latitude  -> 57.77348668300842
23:56 DEBUG   opendrift:2080:                10.753386786948704 <- longitude -> 11.043037434603871
23:56 DEBUG   opendrift:2085:                -41.362337224304625   <- z ->   0.0
23:56 DEBUG   opendrift:2086: ---------------------------------
23:56 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:56 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:56 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:56 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:56 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:56 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:56 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:56 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 20:00:00 (before)
                2025-03-04 21:00:00 (after)
23:57 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
23:57 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
23:57 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
23:57 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
23:57 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
23:57 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
23:57 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 39x34x7) for time after (2025-03-04 21:00:00)
23:57 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 20:00:00) in space  (linearNDFast)
23:57 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:57 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 21:00:00) in space  (linearNDFast)
23:57 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:57 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 20:00:00, weight 0.62) and
                      after (2025-03-04 21:00:00, weight 0.38) in time
23:57 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:57 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.24662423362851 and -58.95697355098676 degrees.
23:57 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.24662423362851 and -58.95697355098676 degrees.
23:57 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:57 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:57 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:57 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:57 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:57 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:57 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:57 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:57 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:57 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:57 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:57 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:57 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:57 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:57 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:57 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:57 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:57 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:57 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:57 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:57 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:57 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:57 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:57 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:57 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:57 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:57 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.120242 (min) 0.512066 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.26003 (min) 0.267253 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0102848 (min) 0.0111774 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 8.3921 (min) 9.72476 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 7.15908 (min) 7.92516 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 26.7604 (min) 46.7463 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.45012 (min) 6.86648 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.0564 (min) 33.2888 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000534666 (min) 0.000685701 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:57 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:57 DEBUG   opendrift:694: No elements hit coastline.
23:57 DEBUG   opendrift:733: No elements hit seafloor.
23:57 DEBUG   opendrift:1695: No elements to deactivate
23:57 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:57 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:57 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:57 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
23:57 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0]
23:57 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3]
23:57 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 376.   0.]
 [  0.   0.   0.   0.   0.]
 [159.   0.   0. 418.   0.]
 [  0.   0. 793.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:57 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:57 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:57 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:57 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:57 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.10559995241188483
23:57 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:57 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:57 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:57 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:57 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:57 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:57 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:57 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:57 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:57 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:57 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:57 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:57 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:57 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:57 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:57 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:57 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:57 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:57 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2
23:58 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:58 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
23:58 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:58 INFO    opendrift.models.chemicaldrift:1861: partitioning: [232, 0, 268, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:58 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:58 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:58 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:58 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:58 DEBUG   opendrift:2055: ======================================================================
23:58 INFO    opendrift:2056: 2025-03-04 20:52:43.574110 - step 62 of 96 - 500 active elements (0 deactivated)
23:58 DEBUG   opendrift:2062: 0 elements scheduled.
23:58 DEBUG   opendrift:2064: ======================================================================
23:58 DEBUG   opendrift:2075:                57.715075904015194 <- latitude  -> 57.774735459004646
23:58 DEBUG   opendrift:2080:                10.764803446256698 <- longitude -> 11.047553474205406
23:58 DEBUG   opendrift:2085:                -41.43936526188234   <- z ->   0.0
23:58 DEBUG   opendrift:2086: ---------------------------------
23:58 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:58 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:58 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:58 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:58 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:58 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:58 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:58 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 20:00:00 (before)
                2025-03-04 21:00:00 (after)
23:58 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 20:00:00) in space  (linearNDFast)
23:58 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:58 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 21:00:00) in space  (linearNDFast)
23:58 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
23:58 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 20:00:00, weight 0.12) and
                      after (2025-03-04 21:00:00, weight 0.88) in time
23:58 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
23:58 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.2352075699428 and -58.9524575046568 degrees.
23:58 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.2352075699428 and -58.9524575046568 degrees.
23:58 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:58 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:58 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
23:58 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:58 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
23:58 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:58 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:58 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
23:58 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:58 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:58 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:58 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:58 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
23:58 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:58 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
23:58 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:58 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:58 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
23:58 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
23:58 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
23:58 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
23:58 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
23:58 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
23:58 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
23:58 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
23:58 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
23:58 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
23:58 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
23:58 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
23:58 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.154287 (min) 0.509933 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.26595 (min) 0.274984 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0282113 (min) -0.00716052 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 8.56608 (min) 9.42233 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 7.09926 (min) 8.12083 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 28.7154 (min) 46.9106 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.46186 (min) 6.83039 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.1366 (min) 33.3104 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000544415 (min) 0.000744002 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
23:58 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
23:58 DEBUG   opendrift:694: No elements hit coastline.
23:58 DEBUG   opendrift:733: No elements hit seafloor.
23:58 DEBUG   opendrift:1695: No elements to deactivate
23:58 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
23:58 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
23:58 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
23:58 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
23:58 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2]
23:58 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0]
23:58 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 377.   0.]
 [  0.   0.   0.   0.   0.]
 [161.   0.   0. 419.   0.]
 [  0.   0. 795.   0.   0.]
 [  0.   0.   0.   0.   0.]]
23:58 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
23:58 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:58 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
23:58 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
23:58 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.10209331827177133
23:58 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
23:58 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
23:58 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
23:58 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:58 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
23:58 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
23:58 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
23:58 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7
23:58 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
23:58 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 7 elements
23:58 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
23:58 INFO    opendrift.models.chemicaldrift:1861: partitioning: [233, 0, 267, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
23:58 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
23:58 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
23:58 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
23:58 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
23:58 DEBUG   opendrift:2055: ======================================================================
23:58 INFO    opendrift:2056: 2025-03-04 21:22:43.574110 - step 63 of 96 - 500 active elements (0 deactivated)
23:58 DEBUG   opendrift:2062: 0 elements scheduled.
23:58 DEBUG   opendrift:2064: ======================================================================
23:58 DEBUG   opendrift:2075:                57.71169981331566 <- latitude  -> 57.77461036049938
23:58 DEBUG   opendrift:2080:                10.76058999791013 <- longitude -> 11.052932821581756
23:58 DEBUG   opendrift:2085:                -41.910800108822855   <- z ->   0.0
23:58 DEBUG   opendrift:2086: ---------------------------------
23:58 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
23:58 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
23:58 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
23:58 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
23:58 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
23:58 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
23:58 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
23:58 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 21:00:00 (before)
                2025-03-04 22:00:00 (after)
24:00 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:00 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:00 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:00 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:00 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:00 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:00 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 39x34x7) for time after (2025-03-04 22:00:00)
24:00 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 21:00:00) in space  (linearNDFast)
24:00 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:00 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 22:00:00) in space  (linearNDFast)
24:00 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:00 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 21:00:00, weight 0.62) and
                      after (2025-03-04 22:00:00, weight 0.38) in time
24:00 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:00 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.23942101876459 and -58.94707816686361 degrees.
24:00 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.23942101876459 and -58.94707816686361 degrees.
24:00 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:00 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:00 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:00 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:00 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
24:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:00 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:00 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:00 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:00 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:00 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:00 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
24:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:00 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:00 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:00 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:00 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:00 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:00 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:00 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:00 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:00 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:00 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.187919 (min) 0.542754 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.278598 (min) 0.177997 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0533969 (min) -0.0323723 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 8.85041 (min) 9.52964 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 6.93105 (min) 7.7272 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 28.3093 (min) 46.7841 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.4768 (min) 6.79337 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.8111 (min) 33.308 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000475862 (min) 0.000641108 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:00 DEBUG   opendrift:694: No elements hit coastline.
24:00 DEBUG   opendrift:733: No elements hit seafloor.
24:00 DEBUG   opendrift:1695: No elements to deactivate
24:00 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:00 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
24:00 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:00 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 11
24:00 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 2 0 0 0 2 0 2 2]
24:00 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 0 3 3 3 0 3 0 0]
24:00 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 382.   0.]
 [  0.   0.   0.   0.   0.]
 [167.   0.   0. 425.   0.]
 [  0.   0. 802.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:00 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:00 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:00 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:00 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:00 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.10142729037170095
24:00 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:00 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:00 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:00 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:00 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 11
24:00 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:00 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 11 elements
24:00 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:00 INFO    opendrift.models.chemicaldrift:1861: partitioning: [234, 0, 265, 1, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:00 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:00 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
24:00 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:00 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:00 DEBUG   opendrift:2055: ======================================================================
24:00 INFO    opendrift:2056: 2025-03-04 21:52:43.574110 - step 64 of 96 - 500 active elements (0 deactivated)
24:00 DEBUG   opendrift:2062: 0 elements scheduled.
24:00 DEBUG   opendrift:2064: ======================================================================
24:00 DEBUG   opendrift:2075:                57.70751584319877 <- latitude  -> 57.775800818292545
24:00 DEBUG   opendrift:2080:                10.755742914609044 <- longitude -> 11.057591756495848
24:00 DEBUG   opendrift:2085:                -42.49025493510548   <- z ->   0.0
24:00 DEBUG   opendrift:2086: ---------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:00 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:00 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:00 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
24:00 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 21:00:00 (before)
                2025-03-04 22:00:00 (after)
24:00 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 21:00:00) in space  (linearNDFast)
24:00 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:00 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 22:00:00) in space  (linearNDFast)
24:00 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:00 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 21:00:00, weight 0.12) and
                      after (2025-03-04 22:00:00, weight 0.88) in time
24:00 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:00 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.24426810636706 and -58.94241922636651 degrees.
24:00 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.24426810636706 and -58.94241922636651 degrees.
24:00 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:00 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:00 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:00 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:00 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
24:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:00 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:00 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:00 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:00 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:00 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:00 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
24:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:00 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:00 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:00 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:00 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:00 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:00 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:00 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:00 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:00 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:00 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.20184 (min) 0.546483 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.274184 (min) 0.279233 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0815607 (min) -0.0602383 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.0915 (min) 9.78257 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 6.65896 (min) 7.23799 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 27.8893 (min) 46.8769 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.39297 (min) 6.77764 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.6277 (min) 33.3435 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000457902 (min) 0.000692188 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:00 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:00 DEBUG   opendrift:694: No elements hit coastline.
24:00 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:00 DEBUG   opendrift:1695: No elements to deactivate
24:00 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:00 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:00 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:00 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 2
24:00 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2]
24:00 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0]
24:00 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 382.   0.]
 [  0.   0.   0.   0.   0.]
 [169.   0.   0. 432.   0.]
 [  0.   0. 813.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:00 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:00 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:00 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:00 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:00 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.10199296854300301
24:00 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:00 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:00 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:00 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:00 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:00 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:00 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:00 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 10
24:00 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:00 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 10 elements
24:00 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:00 INFO    opendrift.models.chemicaldrift:1861: partitioning: [236, 0, 263, 1, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:00 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:00 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
24:00 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:00 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:00 DEBUG   opendrift:2055: ======================================================================
24:00 INFO    opendrift:2056: 2025-03-04 22:22:43.574110 - step 65 of 96 - 500 active elements (0 deactivated)
24:00 DEBUG   opendrift:2062: 0 elements scheduled.
24:00 DEBUG   opendrift:2064: ======================================================================
24:00 DEBUG   opendrift:2075:                57.70308429438149 <- latitude  -> 57.77595874534599
24:00 DEBUG   opendrift:2080:                10.769691995809703 <- longitude -> 11.0660889097223
24:00 DEBUG   opendrift:2085:                -42.55457455794166   <- z ->   0.0
24:00 DEBUG   opendrift:2086: ---------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:00 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:00 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:00 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:00 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
24:00 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 22:00:00 (before)
                2025-03-04 23:00:00 (after)
24:02 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:02 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:02 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:02 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:02 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:02 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:02 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 40x34x7) for time after (2025-03-04 23:00:00)
24:02 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 22:00:00) in space  (linearNDFast)
24:02 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:02 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 23:00:00) in space  (linearNDFast)
24:02 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:02 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 22:00:00, weight 0.62) and
                      after (2025-03-04 23:00:00, weight 0.38) in time
24:02 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:02 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.23031903573387 and -58.933922071858106 degrees.
24:02 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.23031903573387 and -58.933922071858106 degrees.
24:02 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:02 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:02 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:02 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
24:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:02 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:02 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:02 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:02 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:02 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
24:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:02 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:02 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:02 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:02 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:02 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:02 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:02 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:02 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:02 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:02 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.221115 (min) 0.547958 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.264809 (min) 0.239366 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.116265 (min) -0.0937378 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 8.82171 (min) 10.0551 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 6.53984 (min) 7.11049 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 29.48 (min) 46.8144 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.44687 (min) 6.76804 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.4065 (min) 33.3418 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000419678 (min) 0.000562542 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:02 DEBUG   opendrift:694: No elements hit coastline.
24:02 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:02 DEBUG   opendrift:1695: No elements to deactivate
24:02 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:02 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:02 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:02 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
24:02 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 2 2 2]
24:02 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0 0 0]
24:02 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 383.   0.]
 [  0.   0.   0.   0.   0.]
 [174.   0.   0. 442.   0.]
 [  0.   0. 823.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:02 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:02 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:02 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:02 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:02 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.10507444378793451
24:02 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:02 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:02 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:02 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
24:02 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:02 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
24:02 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:02 INFO    opendrift.models.chemicaldrift:1861: partitioning: [240, 0, 256, 4, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:02 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:02 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
24:02 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift:2055: ======================================================================
24:02 INFO    opendrift:2056: 2025-03-04 22:52:43.574110 - step 66 of 96 - 500 active elements (0 deactivated)
24:02 DEBUG   opendrift:2062: 0 elements scheduled.
24:02 DEBUG   opendrift:2064: ======================================================================
24:02 DEBUG   opendrift:2075:                57.6991956028091 <- latitude  -> 57.77701087451218
24:02 DEBUG   opendrift:2080:                10.764553094116414 <- longitude -> 11.069592742782534
24:02 DEBUG   opendrift:2085:                -42.6748636124036   <- z ->   0.0
24:02 DEBUG   opendrift:2086: ---------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:02 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:02 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
24:02 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 22:00:00 (before)
                2025-03-04 23:00:00 (after)
24:02 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 22:00:00) in space  (linearNDFast)
24:02 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:02 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-04 23:00:00) in space  (linearNDFast)
24:02 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:02 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 22:00:00, weight 0.12) and
                      after (2025-03-04 23:00:00, weight 0.88) in time
24:02 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:02 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.23545791555389 and -58.93041824987994 degrees.
24:02 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.23545791555389 and -58.93041824987994 degrees.
24:02 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:02 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:02 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:02 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
24:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:02 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:02 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:02 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:02 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:02 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
24:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:02 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:02 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:02 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:02 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:02 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:02 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:02 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:02 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:02 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:02 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.247158 (min) 0.524159 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.262688 (min) 0.204227 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.153921 (min) -0.128868 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 8.38813 (min) 10.5269 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 6.53813 (min) 7.0839 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 29.3145 (min) 46.8901 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.47008 (min) 6.76354 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.4938 (min) 33.355 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000375646 (min) 0.000586061 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:02 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:02 DEBUG   opendrift:694: No elements hit coastline.
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift:1695: No elements to deactivate
24:02 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:02 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:02 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:02 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
24:02 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2]
24:02 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0]
24:02 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 383.   0.]
 [  0.   0.   0.   0.   0.]
 [178.   0.   0. 447.   0.]
 [  0.   0. 826.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:02 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:02 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:02 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:02 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:02 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.11145201079946324
24:02 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:02 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:02 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:02 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:02 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:02 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:02 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
24:02 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:02 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
24:02 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:02 INFO    opendrift.models.chemicaldrift:1861: partitioning: [244, 0, 251, 5, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:02 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:02 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
24:02 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:02 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:02 DEBUG   opendrift:2055: ======================================================================
24:02 INFO    opendrift:2056: 2025-03-04 23:22:43.574110 - step 67 of 96 - 500 active elements (0 deactivated)
24:02 DEBUG   opendrift:2062: 0 elements scheduled.
24:02 DEBUG   opendrift:2064: ======================================================================
24:02 DEBUG   opendrift:2075:                57.695780064225566 <- latitude  -> 57.778022119610625
24:02 DEBUG   opendrift:2080:                10.758494571943233 <- longitude -> 11.069773556788073
24:02 DEBUG   opendrift:2085:                -42.98687496646995   <- z ->   0.0
24:02 DEBUG   opendrift:2086: ---------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:02 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:02 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:02 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:02 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
24:02 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 23:00:00 (before)
                2025-03-05 00:00:00 (after)
24:05 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:05 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:05 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:05 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:05 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:05 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:05 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 39x35x7) for time after (2025-03-05 00:00:00)
24:05 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 23:00:00) in space  (linearNDFast)
24:05 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:05 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 00:00:00) in space  (linearNDFast)
24:05 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:05 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 23:00:00, weight 0.62) and
                      after (2025-03-05 00:00:00, weight 0.38) in time
24:05 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:05 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.241516446204336 and -58.930237427304604 degrees.
24:05 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.241516446204336 and -58.930237427304604 degrees.
24:05 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:05 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:05 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:05 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:05 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
24:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:05 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:05 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:05 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:05 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:05 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:05 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
24:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:05 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:05 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:05 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:05 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:05 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:05 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:05 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:05 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:05 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:05 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.262979 (min) 0.534408 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.234745 (min) 0.227369 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.192989 (min) -0.165256 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 8.80799 (min) 11.8534 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 6.5454 (min) 7.04879 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 29.98 (min) 46.9947 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.37025 (min) 6.68083 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.4626 (min) 33.3517 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000395223 (min) 0.00052564 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:05 DEBUG   opendrift:694: No elements hit coastline.
24:05 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:05 DEBUG   opendrift:1695: No elements to deactivate
24:05 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:05 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:05 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:05 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
24:05 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 2 0 2 2 2]
24:05 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 0 3 0 0 0]
24:05 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 387.   0.]
 [  0.   0.   0.   0.   0.]
 [183.   0.   0. 454.   0.]
 [  0.   0. 832.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:05 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:05 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:05 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.1341921334796821
24:05 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:05 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:05 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:05 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:05 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9
24:05 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements
24:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:05 INFO    opendrift.models.chemicaldrift:1861: partitioning: [245, 0, 245, 10, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:05 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:05 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
24:05 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:05 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
24:05 DEBUG   opendrift:2055: ======================================================================
24:05 INFO    opendrift:2056: 2025-03-04 23:52:43.574110 - step 68 of 96 - 500 active elements (0 deactivated)
24:05 DEBUG   opendrift:2062: 0 elements scheduled.
24:05 DEBUG   opendrift:2064: ======================================================================
24:05 DEBUG   opendrift:2075:                57.69544383104017 <- latitude  -> 57.77886746503586
24:05 DEBUG   opendrift:2080:                10.75285430563911 <- longitude -> 11.076142380678329
24:05 DEBUG   opendrift:2085:                -44.08474349975586   <- z ->   0.0
24:05 DEBUG   opendrift:2086: ---------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:05 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:05 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:05 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
24:05 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-04 23:00:00 (before)
                2025-03-05 00:00:00 (after)
24:05 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-04 23:00:00) in space  (linearNDFast)
24:05 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:05 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 00:00:00) in space  (linearNDFast)
24:05 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:05 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-04 23:00:00, weight 0.12) and
                      after (2025-03-05 00:00:00, weight 0.88) in time
24:05 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:05 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.24715671017647 and -58.923868591628654 degrees.
24:05 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.24715671017647 and -58.923868591628654 degrees.
24:05 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:05 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:05 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:05 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:05 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
24:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:05 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:05 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:05 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:05 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:05 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:05 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
24:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:05 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:05 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:05 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:05 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:05 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:05 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:05 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:05 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:05 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:05 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.28013 (min) 0.512068 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.242912 (min) 0.198502 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.2324 (min) -0.201079 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.5503 (min) 13.3614 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 6.48941 (min) 7.02327 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 29.7801 (min) 47.0825 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.46225 (min) 6.72015 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.6245 (min) 33.3566 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000391491 (min) 0.000443294 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:05 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:05 DEBUG   opendrift:694: No elements hit coastline.
24:05 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:05 DEBUG   opendrift:1695: No elements to deactivate
24:05 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:05 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:05 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:05 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
24:05 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 0 0]
24:05 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 3 3]
24:05 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 390.   0.]
 [  0.   0.   0.   0.   0.]
 [185.   0.   0. 464.   0.]
 [  0.   0. 841.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:05 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:05 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:05 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.16352053500691402
24:05 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:05 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:05 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:05 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:05 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:05 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
24:05 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:05 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 8
24:05 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 8 elements
24:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:05 INFO    opendrift.models.chemicaldrift:1861: partitioning: [244, 0, 244, 12, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:05 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:05 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
24:05 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:05 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:05 DEBUG   opendrift:2055: ======================================================================
24:05 INFO    opendrift:2056: 2025-03-05 00:22:43.574110 - step 69 of 96 - 500 active elements (0 deactivated)
24:05 DEBUG   opendrift:2062: 0 elements scheduled.
24:05 DEBUG   opendrift:2064: ======================================================================
24:05 DEBUG   opendrift:2075:                57.69543864462248 <- latitude  -> 57.77997262495138
24:05 DEBUG   opendrift:2080:                10.7477346095534 <- longitude -> 11.083899162801226
24:05 DEBUG   opendrift:2085:                -44.08474349975586   <- z ->   0.0
24:05 DEBUG   opendrift:2086: ---------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:05 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:05 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:05 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:05 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
24:05 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 00:00:00 (before)
                2025-03-05 01:00:00 (after)
24:07 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:07 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:07 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:07 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:07 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:07 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:07 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 40x36x7) for time after (2025-03-05 01:00:00)
24:07 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 00:00:00) in space  (linearNDFast)
24:07 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:07 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 01:00:00) in space  (linearNDFast)
24:07 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:07 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 00:00:00, weight 0.62) and
                      after (2025-03-05 01:00:00, weight 0.38) in time
24:07 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:07 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.252276398214846 and -58.9161118149062 degrees.
24:07 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.252276398214846 and -58.9161118149062 degrees.
24:07 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:07 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:07 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:07 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:07 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
24:07 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:07 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:07 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:07 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:07 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:07 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:07 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
24:07 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:07 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:07 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:07 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:07 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:07 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:07 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:07 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:07 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:07 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:07 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.301296 (min) 0.528071 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.187082 (min) 0.221135 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.259609 (min) -0.225499 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.99474 (min) 13.7498 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 6.466 (min) 6.901 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 30.173 (min) 47.2114 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.49704 (min) 6.65206 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.7255 (min) 33.3532 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.00041383 (min) 0.000404808 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:07 DEBUG   opendrift:694: No elements hit coastline.
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift:1695: No elements to deactivate
24:07 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:07 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:07 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:07 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
24:07 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 0]
24:07 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 3]
24:07 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 392.   0.]
 [  0.   0.   0.   0.   0.]
 [187.   0.   0. 471.   0.]
 [  0.   0. 849.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:07 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:07 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:07 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:07 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:07 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.17031778164332328
24:07 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:07 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:07 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:07 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:07 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7
24:07 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:07 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 7 elements
24:07 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:07 INFO    opendrift.models.chemicaldrift:1861: partitioning: [244, 0, 244, 12, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:07 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:07 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
24:07 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:07 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:07 DEBUG   opendrift:2055: ======================================================================
24:07 INFO    opendrift:2056: 2025-03-05 00:52:43.574110 - step 70 of 96 - 500 active elements (0 deactivated)
24:07 DEBUG   opendrift:2062: 0 elements scheduled.
24:07 DEBUG   opendrift:2064: ======================================================================
24:07 DEBUG   opendrift:2075:                57.69353307332675 <- latitude  -> 57.781216533259524
24:07 DEBUG   opendrift:2080:                10.750596918209055 <- longitude -> 11.08984663276895
24:07 DEBUG   opendrift:2085:                -44.17892582816315   <- z ->   0.0
24:07 DEBUG   opendrift:2086: ---------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:07 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:07 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:07 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
24:07 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 00:00:00 (before)
                2025-03-05 01:00:00 (after)
24:07 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 00:00:00) in space  (linearNDFast)
24:07 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:07 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 01:00:00) in space  (linearNDFast)
24:07 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:07 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 00:00:00, weight 0.12) and
                      after (2025-03-05 01:00:00, weight 0.88) in time
24:07 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:07 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.249414085331196 and -58.91016434316441 degrees.
24:07 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.249414085331196 and -58.91016434316441 degrees.
24:07 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:07 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:07 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:07 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:07 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
24:07 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:07 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:07 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:07 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:07 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:07 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:07 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
24:07 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:07 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:07 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:07 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:07 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:07 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:07 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:07 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:07 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:07 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:07 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.320967 (min) 0.542232 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.15591 (min) 0.255181 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.281871 (min) -0.245977 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.2449 (min) 13.7238 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 6.2863 (min) 6.77115 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 30.2766 (min) 47.391 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.45747 (min) 6.64282 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.3464 (min) 33.346 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.00063872 (min) 0.000420049 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:07 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:07 DEBUG   opendrift:694: No elements hit coastline.
24:07 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:07 DEBUG   opendrift:1695: No elements to deactivate
24:07 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:07 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:07 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:07 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
24:07 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0]
24:07 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3]
24:07 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 394.   0.]
 [  0.   0.   0.   0.   0.]
 [188.   0.   0. 476.   0.]
 [  0.   0. 856.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:07 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:07 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:07 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:07 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:07 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.16865921499617267
24:07 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:07 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:07 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:07 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 17 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:07 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:07 DEBUG   opendrift.models.oceandrift:534: 19 elements reached seafloor, interacting with bottom
24:07 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:07 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
24:07 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:07 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
24:07 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:07 INFO    opendrift.models.chemicaldrift:1861: partitioning: [243, 0, 242, 15, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:07 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:07 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
24:07 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:07 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:07 DEBUG   opendrift:2055: ======================================================================
24:07 INFO    opendrift:2056: 2025-03-05 01:22:43.574110 - step 71 of 96 - 500 active elements (0 deactivated)
24:07 DEBUG   opendrift:2062: 0 elements scheduled.
24:07 DEBUG   opendrift:2064: ======================================================================
24:07 DEBUG   opendrift:2075:                57.6917778290264 <- latitude  -> 57.78248420939894
24:07 DEBUG   opendrift:2080:                10.746057750482445 <- longitude -> 11.090834035471756
24:07 DEBUG   opendrift:2085:                -44.781447258856254   <- z ->   0.0
24:07 DEBUG   opendrift:2086: ---------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:07 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:07 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:07 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:07 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
24:07 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 01:00:00 (before)
                2025-03-05 02:00:00 (after)
24:08 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:08 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:08 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:08 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:08 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:08 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:08 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 41x36x7) for time after (2025-03-05 02:00:00)
24:08 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 01:00:00) in space  (linearNDFast)
24:08 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:08 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 02:00:00) in space  (linearNDFast)
24:08 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:08 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 01:00:00, weight 0.62) and
                      after (2025-03-05 02:00:00, weight 0.38) in time
24:08 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:09 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.25395326265653 and -58.90917694544338 degrees.
24:09 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.25395326265653 and -58.90917694544338 degrees.
24:09 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:09 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:09 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:09 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:09 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
24:09 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:09 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:09 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:09 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:09 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:09 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:09 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
24:09 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:09 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:09 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:09 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:09 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:09 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:09 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:09 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:09 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:09 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:09 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.335726 (min) 0.52255 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.142537 (min) 0.212545 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.291857 (min) -0.255283 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.3591 (min) 13.7071 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 6.2314 (min) 6.65961 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 30.1641 (min) 47.6184 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.51281 (min) 6.57038 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.3853 (min) 33.3448 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000599874 (min) 0.000359118 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:09 DEBUG   opendrift:694: No elements hit coastline.
24:09 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:09 DEBUG   opendrift:1695: No elements to deactivate
24:09 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:09 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:09 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:09 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
24:09 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 2 2 0 2]
24:09 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 0 0 3 0]
24:09 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 399.   0.]
 [  0.   0.   0.   0.   0.]
 [192.   0.   0. 481.   0.]
 [  0.   0. 860.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:09 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:09 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:09 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:09 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:09 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.16707502803118118
24:09 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:09 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:09 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:09 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:09 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12
24:09 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:09 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements
24:09 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:09 INFO    opendrift.models.chemicaldrift:1861: partitioning: [242, 0, 242, 16, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:09 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:09 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
24:09 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:09 DEBUG   opendrift:738: Lifting 16 elements to seafloor.
24:09 DEBUG   opendrift:2055: ======================================================================
24:09 INFO    opendrift:2056: 2025-03-05 01:52:43.574110 - step 72 of 96 - 500 active elements (0 deactivated)
24:09 DEBUG   opendrift:2062: 0 elements scheduled.
24:09 DEBUG   opendrift:2064: ======================================================================
24:09 DEBUG   opendrift:2075:                57.690655829334865 <- latitude  -> 57.78385148452737
24:09 DEBUG   opendrift:2080:                10.751101482824728 <- longitude -> 11.0965799102892
24:09 DEBUG   opendrift:2085:                -45.450627201137124   <- z ->   0.0
24:09 DEBUG   opendrift:2086: ---------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:09 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:09 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:09 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
24:09 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 01:00:00 (before)
                2025-03-05 02:00:00 (after)
24:09 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 01:00:00) in space  (linearNDFast)
24:09 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:09 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 02:00:00) in space  (linearNDFast)
24:09 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:09 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 01:00:00, weight 0.12) and
                      after (2025-03-05 02:00:00, weight 0.88) in time
24:09 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:09 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.248909518133075 and -58.90343105005203 degrees.
24:09 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.248909518133075 and -58.90343105005203 degrees.
24:09 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:09 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:09 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:09 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:09 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
24:09 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:09 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:09 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:09 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:09 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:09 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:09 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
24:09 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:09 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:09 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:09 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:09 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:09 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:09 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:09 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:09 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:09 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:09 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.342057 (min) 0.50419 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.146031 (min) 0.267183 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.29516 (min) -0.261371 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.61 (min) 13.6112 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 6.19489 (min) 6.57189 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 31.1052 (min) 47.8582 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.39415 (min) 6.52175 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.652 (min) 33.3363 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000507518 (min) 0.000382876 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:09 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:09 DEBUG   opendrift:694: No elements hit coastline.
24:09 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:09 DEBUG   opendrift:1695: No elements to deactivate
24:09 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:09 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:09 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:09 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
24:09 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 2 2 0 0 2]
24:09 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 0 3 3 0]
24:09 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 404.   0.]
 [  0.   0.   0.   0.   0.]
 [195.   0.   0. 489.   0.]
 [  0.   0. 872.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:09 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:09 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:09 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:09 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:09 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.16390356142028062
24:09 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:09 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:09 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:09 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:09 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:09 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:09 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:09 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 10
24:09 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:09 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 10 elements
24:09 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:09 INFO    opendrift.models.chemicaldrift:1861: partitioning: [240, 0, 244, 16, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:09 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:09 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
24:09 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:09 DEBUG   opendrift:738: Lifting 17 elements to seafloor.
24:09 DEBUG   opendrift:2055: ======================================================================
24:09 INFO    opendrift:2056: 2025-03-05 02:22:43.574110 - step 73 of 96 - 500 active elements (0 deactivated)
24:09 DEBUG   opendrift:2062: 0 elements scheduled.
24:09 DEBUG   opendrift:2064: ======================================================================
24:09 DEBUG   opendrift:2075:                57.688594724151336 <- latitude  -> 57.78510422591286
24:09 DEBUG   opendrift:2080:                10.750630164930636 <- longitude -> 11.10627649694142
24:09 DEBUG   opendrift:2085:                -45.99429442119518   <- z ->   0.0
24:09 DEBUG   opendrift:2086: ---------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:09 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:09 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:09 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:09 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
24:09 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 02:00:00 (before)
                2025-03-05 03:00:00 (after)
24:10 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:10 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:10 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:10 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:10 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:10 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:10 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 41x37x7) for time after (2025-03-05 03:00:00)
24:10 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 02:00:00) in space  (linearNDFast)
24:10 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:10 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 03:00:00) in space  (linearNDFast)
24:10 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:10 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 02:00:00, weight 0.62) and
                      after (2025-03-05 03:00:00, weight 0.38) in time
24:10 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:10 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.249380851538106 and -58.89373446508898 degrees.
24:10 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.249380851538106 and -58.89373446508898 degrees.
24:10 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:10 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:10 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:10 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:10 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
24:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:10 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:10 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:10 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:10 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:10 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:10 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
24:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:10 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:10 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:10 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:10 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:10 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:10 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:10 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:10 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:10 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:10 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.3454 (min) 0.526152 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.170571 (min) 0.285578 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.270898 (min) -0.24033 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.1903 (min) 13.5115 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 6.32956 (min) 6.7668 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 31.3848 (min) 48.1073 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.31432 (min) 6.59329 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.725 (min) 33.3322 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000550981 (min) 0.000563799 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:10 DEBUG   opendrift:694: No elements hit coastline.
24:10 DEBUG   opendrift:738: Lifting 18 elements to seafloor.
24:10 DEBUG   opendrift:1695: No elements to deactivate
24:10 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:10 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:10 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:10 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
24:10 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 0 0 0 2]
24:10 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 3 3 3 0]
24:10 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 408.   0.]
 [  0.   0.   0.   0.   0.]
 [198.   0.   0. 494.   0.]
 [  0.   0. 882.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:10 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:10 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:10 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.1639075578983613
24:10 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:10 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:10 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:10 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 20 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 21 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:10 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 10
24:10 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 10 elements
24:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:10 INFO    opendrift.models.chemicaldrift:1861: partitioning: [239, 0, 241, 20, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:10 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:10 DEBUG   opendrift:2144: 500 active elements (0 deactivated)
24:10 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:10 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
24:10 DEBUG   opendrift:2055: ======================================================================
24:10 INFO    opendrift:2056: 2025-03-05 02:52:43.574110 - step 74 of 96 - 500 active elements (0 deactivated)
24:10 DEBUG   opendrift:2062: 0 elements scheduled.
24:10 DEBUG   opendrift:2064: ======================================================================
24:10 DEBUG   opendrift:2075:                57.68583792393795 <- latitude  -> 57.7861901738244
24:10 DEBUG   opendrift:2080:                10.760657648011051 <- longitude -> 11.115616773689359
24:10 DEBUG   opendrift:2085:                -45.22743406636375   <- z ->   -0.05258463623449883
24:10 DEBUG   opendrift:2086: ---------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:10 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:10 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:10 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 499 elements
24:10 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 02:00:00 (before)
                2025-03-05 03:00:00 (after)
24:10 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 02:00:00) in space  (linearNDFast)
24:10 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:10 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 03:00:00) in space  (linearNDFast)
24:10 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:10 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 02:00:00, weight 0.12) and
                      after (2025-03-05 03:00:00, weight 0.88) in time
24:10 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:10 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.23935336746395 and -58.884394204197335 degrees.
24:10 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.23935336746395 and -58.884394204197335 degrees.
24:10 DEBUG   opendrift.readers.basereader.variables:836: Masking 1 elements outside coverage
24:10 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 1 elements.
24:10 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:10 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:10 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:10 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
24:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:10 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:10 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:10 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:10 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:10 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 500 elements
24:10 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
24:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:10 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:10 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:10 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:10 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:10 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 1 elements
24:10 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 1 elements
24:10 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 1 elements
24:10 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 1 elements
24:10 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:10 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 1 elements
24:10 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 1 profiles
24:10 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 1 elements
24:10 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 1 profiles
24:10 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 1 elements
24:10 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:10 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:10 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.346579 (min) 0.510717 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.202768 (min) 0.280604 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.236151 (min) 0 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 13.2532 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 7.04296 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 31.5632 (min) 10000 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.36449 (min) 10 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.7395 (min) 34 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000602163 (min) 0.00057145 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:10 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:10 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:10 DEBUG   opendrift:694: No elements hit coastline.
24:10 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:10 DEBUG   opendrift:1668: Added status missing_data
24:10 DEBUG   opendrift:1679: 1 elements scheduled for deactivation (missing_data)
24:10 DEBUG   opendrift:1681:        (z: -35.508875 to -35.508875)
24:10 DEBUG   opendrift:1699: Removed 1 elements.
24:10 DEBUG   opendrift:1702: Removed 1 values from environment.
24:10 DEBUG   opendrift:1707: remove items from profile for z
24:10 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:10 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:10 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:10 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:10 DEBUG   opendrift:1711: Removed 1 values from environment_profiles.
24:10 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:10 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:10 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:10 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 11
24:10 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 0 0 2 0 2 0 0 0]
24:10 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 3 0 3 0 3 3 3]
24:10 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 416.   0.]
 [  0.   0.   0.   0.   0.]
 [201.   0.   0. 504.   0.]
 [  0.   0. 892.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:10 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:10 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:10 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.16190776545663868
24:10 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:10 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:10 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:10 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:10 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:10 DEBUG   opendrift.models.oceandrift:534: 32 elements reached seafloor, interacting with bottom
24:10 DEBUG   opendrift:738: Lifting 32 elements to seafloor.
24:10 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12
24:10 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements
24:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:10 INFO    opendrift.models.chemicaldrift:1861: partitioning: [233, 0, 246, 20, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:10 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:10 DEBUG   opendrift:2144: 499 active elements (1 deactivated)
24:10 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:10 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
24:10 DEBUG   opendrift:2055: ======================================================================
24:10 INFO    opendrift:2056: 2025-03-05 03:22:43.574110 - step 75 of 96 - 499 active elements (1 deactivated)
24:10 DEBUG   opendrift:2062: 0 elements scheduled.
24:10 DEBUG   opendrift:2064: ======================================================================
24:10 DEBUG   opendrift:2075:                57.68905634168962 <- latitude  -> 57.78706430118369
24:10 DEBUG   opendrift:2080:                10.772847577010399 <- longitude -> 11.123615797302254
24:10 DEBUG   opendrift:2085:                -44.5493177069919   <- z ->   0.0
24:10 DEBUG   opendrift:2086: ---------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:10 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:10 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:10 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 499 elements
24:10 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 499 elements
24:10 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 03:00:00 (before)
                2025-03-05 04:00:00 (after)
24:12 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:12 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:12 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:12 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:12 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:12 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:12 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 41x35x7) for time after (2025-03-05 04:00:00)
24:12 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 03:00:00) in space  (linearNDFast)
24:12 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:12 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 04:00:00) in space  (linearNDFast)
24:12 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:12 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 03:00:00, weight 0.62) and
                      after (2025-03-05 04:00:00, weight 0.38) in time
24:12 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:12 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.22716343569399 and -58.87639517462392 degrees.
24:12 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.22716343569399 and -58.87639517462392 degrees.
24:12 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:12 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:12 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:12 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 499 elements
24:12 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 499 elements
24:12 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:12 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:12 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:12 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:12 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:12 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 499 elements
24:12 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 499 elements
24:12 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:12 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:12 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:12 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:12 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:12 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:12 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:12 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:12 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:12 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:12 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.333972 (min) 0.586076 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.248154 (min) 0.254428 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.186798 (min) -0.16493 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.63149 (min) 13.1605 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 6.44243 (min) 6.98553 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 31.8687 (min) 48.6621 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.46078 (min) 6.59863 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.6719 (min) 33.3126 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000510344 (min) 0.000498548 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:12 DEBUG   opendrift:694: No elements hit coastline.
24:12 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:12 DEBUG   opendrift:1695: No elements to deactivate
24:12 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:12 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:12 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:12 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
24:12 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 2 0 2 2]
24:12 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 0 3 0 0]
24:12 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 421.   0.]
 [  0.   0.   0.   0.   0.]
 [205.   0.   0. 508.   0.]
 [  0.   0. 904.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:12 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:12 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:12 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:12 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:12 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.15973656223419697
24:12 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:12 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:12 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:12 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:12 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12
24:12 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:12 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements
24:12 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:12 INFO    opendrift.models.chemicaldrift:1861: partitioning: [232, 0, 248, 19, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:12 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:12 DEBUG   opendrift:2144: 499 active elements (1 deactivated)
24:12 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:12 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:12 DEBUG   opendrift:2055: ======================================================================
24:12 INFO    opendrift:2056: 2025-03-05 03:52:43.574110 - step 76 of 96 - 499 active elements (1 deactivated)
24:12 DEBUG   opendrift:2062: 0 elements scheduled.
24:12 DEBUG   opendrift:2064: ======================================================================
24:12 DEBUG   opendrift:2075:                57.685165792995434 <- latitude  -> 57.78768974196031
24:12 DEBUG   opendrift:2080:                10.781017856333161 <- longitude -> 11.129677357025024
24:12 DEBUG   opendrift:2085:                -43.79917920628651   <- z ->   0.0
24:12 DEBUG   opendrift:2086: ---------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:12 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:12 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 499 elements
24:12 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 499 elements
24:12 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 03:00:00 (before)
                2025-03-05 04:00:00 (after)
24:12 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 03:00:00) in space  (linearNDFast)
24:12 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:12 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 04:00:00) in space  (linearNDFast)
24:12 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:12 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 03:00:00, weight 0.12) and
                      after (2025-03-05 04:00:00, weight 0.88) in time
24:12 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:12 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.218993145248625 and -58.87033361370614 degrees.
24:12 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.218993145248625 and -58.87033361370614 degrees.
24:12 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:12 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:12 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:12 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 499 elements
24:12 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 499 elements
24:12 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:12 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:12 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:12 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:12 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:12 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 499 elements
24:12 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 499 elements
24:12 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:12 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:12 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:12 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:12 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:12 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:12 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:12 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:12 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:12 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:12 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.322679 (min) 0.533671 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.29479 (min) 0.25389 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.134961 (min) -0.11367 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 9.13813 (min) 13.0833 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 6.29203 (min) 6.81714 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 31.896 (min) 48.8918 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.5365 (min) 6.59049 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.7278 (min) 33.3002 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000540758 (min) 0.000851147 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:12 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:12 DEBUG   opendrift:694: No elements hit coastline.
24:12 DEBUG   opendrift:738: Lifting 20 elements to seafloor.
24:12 DEBUG   opendrift:1695: No elements to deactivate
24:12 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:12 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:12 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:12 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
24:12 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 0 0]
24:12 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 3 3]
24:12 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 424.   0.]
 [  0.   0.   0.   0.   0.]
 [207.   0.   0. 514.   0.]
 [  0.   0. 916.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:12 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:12 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:12 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:12 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:12 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.15667596611591672
24:12 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:12 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:12 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:12 DEBUG   opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 22 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 22 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 23 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 23 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 25 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 25 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:12 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:12 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:12 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12
24:12 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:12 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements
24:12 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:12 INFO    opendrift.models.chemicaldrift:1861: partitioning: [231, 0, 251, 17, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:12 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:12 DEBUG   opendrift:2144: 499 active elements (1 deactivated)
24:12 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:12 DEBUG   opendrift:738: Lifting 19 elements to seafloor.
24:12 DEBUG   opendrift:2055: ======================================================================
24:12 INFO    opendrift:2056: 2025-03-05 04:22:43.574110 - step 77 of 96 - 499 active elements (1 deactivated)
24:12 DEBUG   opendrift:2062: 0 elements scheduled.
24:12 DEBUG   opendrift:2064: ======================================================================
24:12 DEBUG   opendrift:2075:                57.68148761265669 <- latitude  -> 57.788018857526616
24:12 DEBUG   opendrift:2080:                10.784510497894168 <- longitude -> 11.13629478779034
24:12 DEBUG   opendrift:2085:                -43.78797149658203   <- z ->   0.0
24:12 DEBUG   opendrift:2086: ---------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:12 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:12 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:12 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 499 elements
24:12 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 497 elements
24:12 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 04:00:00 (before)
                2025-03-05 05:00:00 (after)
24:14 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:14 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:14 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:14 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:14 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:14 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:14 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 41x35x7) for time after (2025-03-05 05:00:00)
24:14 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 04:00:00) in space  (linearNDFast)
24:14 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:14 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 05:00:00) in space  (linearNDFast)
24:14 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:14 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 04:00:00, weight 0.62) and
                      after (2025-03-05 05:00:00, weight 0.38) in time
24:14 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:14 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.21550050165175 and -58.86371618192681 degrees.
24:14 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.21550050165175 and -58.86371618192681 degrees.
24:14 DEBUG   opendrift.readers.basereader.variables:836: Masking 2 elements outside coverage
24:14 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 2 elements.
24:14 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:14 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:14 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 499 elements
24:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 499 elements
24:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:14 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:14 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:14 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:14 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:14 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 499 elements
24:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 499 elements
24:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:14 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:14 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:14 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:14 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:14 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 2 elements
24:14 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 2 elements
24:14 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 2 elements
24:14 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 2 elements
24:14 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:14 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 2 elements
24:14 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:14 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:14 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 2 elements
24:14 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:14 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:14 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 2 elements
24:14 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:14 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:14 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.297768 (min) 0.54156 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.358574 (min) 0.25041 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0747288 (min) 0 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 13.465 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 6.64525 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 32.2479 (min) 10000 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.54886 (min) 10 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.9192 (min) 34 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000397444 (min) 0.000959846 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:14 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:14 DEBUG   opendrift:694: No elements hit coastline.
24:14 DEBUG   opendrift:738: Lifting 21 elements to seafloor.
24:14 DEBUG   opendrift:1679: 2 elements scheduled for deactivation (missing_data)
24:14 DEBUG   opendrift:1681:        (z: -20.666146 to -3.119462)
24:14 DEBUG   opendrift:1699: Removed 2 elements.
24:14 DEBUG   opendrift:1702: Removed 2 values from environment.
24:14 DEBUG   opendrift:1707: remove items from profile for z
24:14 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:14 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:14 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:14 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:14 DEBUG   opendrift:1711: Removed 2 values from environment_profiles.
24:14 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:14 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:14 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:14 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
24:14 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0]
24:14 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3]
24:14 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 428.   0.]
 [  0.   0.   0.   0.   0.]
 [207.   0.   0. 521.   0.]
 [  0.   0. 928.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:14 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:14 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:14 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:14 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:14 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.1621700078522519
24:14 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:14 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:14 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:14 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 24 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 24 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 26 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 26 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 27 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 27 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 28 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 28 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 29 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 29 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 30 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 30 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 31 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 31 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 33 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 33 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 33 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 33 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 33 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 33 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 33 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 33 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 33 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 33 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 33 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 33 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 33 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 33 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 33 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 33 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 33 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 33 elements to seafloor.
24:14 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 18
24:14 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:14 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 18 elements
24:14 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:14 INFO    opendrift.models.chemicaldrift:1861: partitioning: [225, 0, 257, 15, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:14 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:14 DEBUG   opendrift:2144: 497 active elements (3 deactivated)
24:14 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:14 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:14 DEBUG   opendrift:2055: ======================================================================
24:14 INFO    opendrift:2056: 2025-03-05 04:52:43.574110 - step 78 of 96 - 497 active elements (3 deactivated)
24:14 DEBUG   opendrift:2062: 0 elements scheduled.
24:14 DEBUG   opendrift:2064: ======================================================================
24:14 DEBUG   opendrift:2075:                57.68157316136273 <- latitude  -> 57.78803646580544
24:14 DEBUG   opendrift:2080:                10.791116589654395 <- longitude -> 11.142573140919833
24:14 DEBUG   opendrift:2085:                -43.0027581691895   <- z ->   0.0
24:14 DEBUG   opendrift:2086: ---------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:14 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:14 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 497 elements
24:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 497 elements
24:14 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 04:00:00 (before)
                2025-03-05 05:00:00 (after)
24:14 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 04:00:00) in space  (linearNDFast)
24:14 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:14 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 05:00:00) in space  (linearNDFast)
24:14 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:14 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 04:00:00, weight 0.12) and
                      after (2025-03-05 05:00:00, weight 0.88) in time
24:14 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:14 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.2088944038192 and -58.85743782344996 degrees.
24:14 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.2088944038192 and -58.85743782344996 degrees.
24:14 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:14 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:14 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:14 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 497 elements
24:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 497 elements
24:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:14 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:14 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:14 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:14 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:14 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 497 elements
24:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 497 elements
24:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:14 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:14 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:14 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:14 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:14 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:14 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:14 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:14 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:14 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:14 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.268737 (min) 0.539532 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.410071 (min) 0.24478 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0108219 (min) 0.0118525 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 10.1339 (min) 13.8676 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 5.89934 (min) 6.4774 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 32.2379 (min) 49.3565 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.52674 (min) 6.52117 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.2174 (min) 33.2522 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000371635 (min) 0.00128891 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:14 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:14 DEBUG   opendrift:694: No elements hit coastline.
24:14 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:14 DEBUG   opendrift:1695: No elements to deactivate
24:14 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:14 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:14 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:14 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
24:14 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 3 2 2 0 2 0]
24:14 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 0 0 0 3 0 3]
24:14 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 432.   0.]
 [  0.   0.   0.   0.   0.]
 [211.   0.   0. 533.   0.]
 [  1.   0. 946.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:14 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:14 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:14 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:14 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:14 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.16828000147708802
24:14 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:14 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:14 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:14 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 14 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 15 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 15 elements to seafloor.
24:14 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:14 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:14 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:14 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 22
24:14 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:14 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 22 elements
24:14 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:14 INFO    opendrift.models.chemicaldrift:1861: partitioning: [226, 0, 270, 1, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:14 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:14 DEBUG   opendrift:2144: 497 active elements (3 deactivated)
24:14 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:14 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:14 DEBUG   opendrift:2055: ======================================================================
24:14 INFO    opendrift:2056: 2025-03-05 05:22:43.574110 - step 79 of 96 - 497 active elements (3 deactivated)
24:14 DEBUG   opendrift:2062: 0 elements scheduled.
24:14 DEBUG   opendrift:2064: ======================================================================
24:14 DEBUG   opendrift:2075:                57.67820529040453 <- latitude  -> 57.78770802695179
24:14 DEBUG   opendrift:2080:                10.799563333794083 <- longitude -> 11.152855222032972
24:14 DEBUG   opendrift:2085:                -44.61471536333654   <- z ->   0.0
24:14 DEBUG   opendrift:2086: ---------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:14 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:14 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:14 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 497 elements
24:14 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 496 elements
24:14 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 05:00:00 (before)
                2025-03-05 06:00:00 (after)
24:16 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:16 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:16 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:16 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:16 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:16 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:16 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 42x34x7) for time after (2025-03-05 06:00:00)
24:16 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 05:00:00) in space  (linearNDFast)
24:16 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:16 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 06:00:00) in space  (linearNDFast)
24:16 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:16 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 05:00:00, weight 0.62) and
                      after (2025-03-05 06:00:00, weight 0.38) in time
24:16 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:16 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.200447673625575 and -58.84715573605958 degrees.
24:16 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.200447673625575 and -58.84715573605958 degrees.
24:16 DEBUG   opendrift.readers.basereader.variables:836: Masking 1 elements outside coverage
24:16 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 1 elements.
24:16 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:16 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:16 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 497 elements
24:16 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 497 elements
24:16 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:16 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:16 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:16 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:16 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:16 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 497 elements
24:16 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 497 elements
24:16 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:16 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:16 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:16 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:16 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:16 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 1 elements
24:16 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 1 elements
24:16 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 1 elements
24:16 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 1 elements
24:16 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:16 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 1 elements
24:16 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 1 profiles
24:16 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 1 elements
24:16 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 1 profiles
24:16 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 1 elements
24:16 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:16 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:16 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.237946 (min) 0.516866 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.437604 (min) 0.240569 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0 (min) 0.0597023 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 13.6411 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 6.26771 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 32.3133 (min) 10000 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.53312 (min) 10 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.1683 (min) 34 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000312704 (min) 0.00139486 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:16 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:16 DEBUG   opendrift:694: No elements hit coastline.
24:16 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:16 DEBUG   opendrift:1679: 1 elements scheduled for deactivation (missing_data)
24:16 DEBUG   opendrift:1681:        (z: -7.123025 to -7.123025)
24:16 DEBUG   opendrift:1699: Removed 1 elements.
24:16 DEBUG   opendrift:1702: Removed 1 values from environment.
24:16 DEBUG   opendrift:1707: remove items from profile for z
24:16 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:16 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:16 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:16 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:16 DEBUG   opendrift:1711: Removed 1 values from environment_profiles.
24:16 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:16 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:16 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:16 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 2
24:16 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0]
24:16 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3]
24:16 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 434.   0.]
 [  0.   0.   0.   0.   0.]
 [211.   0.   0. 538.   0.]
 [  1.   0. 968.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:16 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:16 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:16 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:16 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:16 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.16181796473538373
24:16 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:16 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:16 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:16 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:16 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12
24:16 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:16 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
24:16 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:16 INFO    opendrift.models.chemicaldrift:1861: partitioning: [223, 0, 273, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:16 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:16 DEBUG   opendrift:2144: 496 active elements (4 deactivated)
24:16 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:16 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:16 DEBUG   opendrift:2055: ======================================================================
24:16 INFO    opendrift:2056: 2025-03-05 05:52:43.574110 - step 80 of 96 - 496 active elements (4 deactivated)
24:16 DEBUG   opendrift:2062: 0 elements scheduled.
24:16 DEBUG   opendrift:2064: ======================================================================
24:16 DEBUG   opendrift:2075:                57.67539123070518 <- latitude  -> 57.78717144361655
24:16 DEBUG   opendrift:2080:                10.806564097498914 <- longitude -> 11.159097626253006
24:16 DEBUG   opendrift:2085:                -45.675280783922965   <- z ->   0.0
24:16 DEBUG   opendrift:2086: ---------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:16 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:16 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 496 elements
24:16 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 494 elements
24:16 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 05:00:00 (before)
                2025-03-05 06:00:00 (after)
24:16 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 05:00:00) in space  (linearNDFast)
24:16 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:16 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 06:00:00) in space  (linearNDFast)
24:16 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:16 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 05:00:00, weight 0.12) and
                      after (2025-03-05 06:00:00, weight 0.88) in time
24:16 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:16 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.19344691203802 and -58.84091333236144 degrees.
24:16 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.19344691203802 and -58.84091333236144 degrees.
24:16 DEBUG   opendrift.readers.basereader.variables:836: Masking 2 elements outside coverage
24:16 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 2 elements.
24:16 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:16 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:16 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 496 elements
24:16 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 496 elements
24:16 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:16 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:16 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:16 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:16 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:16 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 496 elements
24:16 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 496 elements
24:16 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:16 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:16 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:16 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:16 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:16 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 2 elements
24:16 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 2 elements
24:16 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 2 elements
24:16 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 2 elements
24:16 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:16 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 2 elements
24:16 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:16 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:16 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 2 elements
24:16 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:16 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:16 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 2 elements
24:16 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:16 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:16 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.208883 (min) 0.543258 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.464938 (min) 0.258042 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0 (min) 0.102314 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 13.2026 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 6.03754 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 32.3255 (min) 10000 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.53312 (min) 10 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.9758 (min) 34 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000271186 (min) 0.00157053 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:16 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:16 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:16 DEBUG   opendrift:694: No elements hit coastline.
24:16 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:16 DEBUG   opendrift:1679: 2 elements scheduled for deactivation (missing_data)
24:16 DEBUG   opendrift:1681:        (z: -4.228104 to -3.117968)
24:16 DEBUG   opendrift:1699: Removed 2 elements.
24:16 DEBUG   opendrift:1702: Removed 2 values from environment.
24:16 DEBUG   opendrift:1707: remove items from profile for z
24:16 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:16 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:16 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:16 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:16 DEBUG   opendrift:1711: Removed 2 values from environment_profiles.
24:16 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:16 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
24:16 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:16 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
24:16 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 0 2 2]
24:16 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 3 0 0]
24:16 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 435.   0.]
 [  0.   0.   0.   0.   0.]
 [217.   0.   0. 538.   0.]
 [  1.   0. 971.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:16 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:16 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:16 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:16 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:16 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.15138355587794264
24:16 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:16 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:16 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:16 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:16 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:16 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:16 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:16 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7
24:16 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:16 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
24:16 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:16 INFO    opendrift.models.chemicaldrift:1861: partitioning: [227, 0, 267, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:16 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:16 DEBUG   opendrift:2144: 494 active elements (6 deactivated)
24:16 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:16 DEBUG   opendrift:733: No elements hit seafloor.
24:16 DEBUG   opendrift:2055: ======================================================================
24:16 INFO    opendrift:2056: 2025-03-05 06:22:43.574110 - step 81 of 96 - 494 active elements (6 deactivated)
24:16 DEBUG   opendrift:2062: 0 elements scheduled.
24:16 DEBUG   opendrift:2064: ======================================================================
24:16 DEBUG   opendrift:2075:                57.66824302513292 <- latitude  -> 57.78644857499054
24:16 DEBUG   opendrift:2080:                10.810516804030033 <- longitude -> 11.166187004580701
24:16 DEBUG   opendrift:2085:                -45.391238425269876   <- z ->   0.0
24:16 DEBUG   opendrift:2086: ---------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:16 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:16 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:16 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 494 elements
24:16 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 486 elements
24:16 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 06:00:00 (before)
                2025-03-05 07:00:00 (after)
24:17 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:17 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:17 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:17 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:17 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:17 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:17 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 42x33x7) for time after (2025-03-05 07:00:00)
24:17 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 06:00:00) in space  (linearNDFast)
24:17 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:17 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 07:00:00) in space  (linearNDFast)
24:17 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:17 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 06:00:00, weight 0.62) and
                      after (2025-03-05 07:00:00, weight 0.38) in time
24:17 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:17 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.18949418738336 and -58.83382394536921 degrees.
24:17 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.18949418738336 and -58.83382394536921 degrees.
24:17 DEBUG   opendrift.readers.basereader.variables:836: Masking 8 elements outside coverage
24:17 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 8 elements.
24:17 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:17 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:17 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:17 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:17 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:17 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 494 elements
24:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 494 elements
24:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:17 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:17 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:17 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:17 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:17 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:17 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:17 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:17 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 494 elements
24:17 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 494 elements
24:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:17 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:17 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:17 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:17 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:17 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:17 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 8 elements
24:17 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 8 elements
24:17 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 8 elements
24:17 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 8 elements
24:17 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:17 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 8 elements
24:17 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:17 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:17 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 8 elements
24:17 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:17 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:17 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 8 elements
24:17 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:17 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:17 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.201952 (min) 0.479854 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.481298 (min) 0.25966 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0 (min) 0.123364 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 12.8199 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 6.1517 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 32.5108 (min) 10000 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.52353 (min) 10 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.2867 (min) 34 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000278954 (min) 0.0013021 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:17 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:17 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:17 DEBUG   opendrift:694: No elements hit coastline.
24:17 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:17 DEBUG   opendrift:1679: 8 elements scheduled for deactivation (missing_data)
24:17 DEBUG   opendrift:1681:        (z: -26.872762 to -1.174997)
24:17 DEBUG   opendrift:1699: Removed 8 elements.
24:17 DEBUG   opendrift:1702: Removed 8 values from environment.
24:17 DEBUG   opendrift:1707: remove items from profile for z
24:17 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:17 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:17 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:17 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:17 DEBUG   opendrift:1711: Removed 8 values from environment_profiles.
24:17 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:17 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
24:17 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:17 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
24:17 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 0 2 0]
24:17 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3 0 3]
24:17 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 440.   0.]
 [  0.   0.   0.   0.   0.]
 [219.   0.   0. 538.   0.]
 [  1.   0. 972.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:17 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:17 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:17 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.144702320080519
24:17 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:17 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:17 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:17 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:17 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:17 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:17 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:17 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:17 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:17 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:17 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:17 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:17 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:17 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:17 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:17 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:17 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:17 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:17 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:17 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:17 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:17 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:17 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:17 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:17 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:17 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:17 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:17 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:17 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:17 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:17 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:17 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:17 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:17 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:17 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:18 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9
24:18 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:18 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
24:18 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:18 INFO    opendrift.models.chemicaldrift:1861: partitioning: [218, 0, 267, 1, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:18 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:18 DEBUG   opendrift:2144: 486 active elements (14 deactivated)
24:18 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:18 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:18 DEBUG   opendrift:2055: ======================================================================
24:18 INFO    opendrift:2056: 2025-03-05 06:52:43.574110 - step 82 of 96 - 486 active elements (14 deactivated)
24:18 DEBUG   opendrift:2062: 0 elements scheduled.
24:18 DEBUG   opendrift:2064: ======================================================================
24:18 DEBUG   opendrift:2075:                57.661037633242344 <- latitude  -> 57.78565952474658
24:18 DEBUG   opendrift:2080:                10.821211290394894 <- longitude -> 11.172715898962013
24:18 DEBUG   opendrift:2085:                -44.761473835948266   <- z ->   0.0
24:18 DEBUG   opendrift:2086: ---------------------------------
24:18 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:18 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:18 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:18 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:18 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:18 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 486 elements
24:18 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 472 elements
24:18 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 06:00:00 (before)
                2025-03-05 07:00:00 (after)
24:18 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 06:00:00) in space  (linearNDFast)
24:18 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:18 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 07:00:00) in space  (linearNDFast)
24:18 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:18 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 06:00:00, weight 0.12) and
                      after (2025-03-05 07:00:00, weight 0.88) in time
24:18 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:18 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.17879971611557 and -58.82729505920139 degrees.
24:18 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.17879971611557 and -58.82729505920139 degrees.
24:18 DEBUG   opendrift.readers.basereader.variables:836: Masking 14 elements outside coverage
24:18 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 14 elements.
24:18 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:18 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:18 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:18 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:18 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:18 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 486 elements
24:18 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 486 elements
24:18 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:18 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:18 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:18 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:18 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:18 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:18 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:18 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:18 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 486 elements
24:18 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 486 elements
24:18 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:18 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:18 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:18 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:18 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:18 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:18 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 14 elements
24:18 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 14 elements
24:18 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 14 elements
24:18 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 14 elements
24:18 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:18 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 14 elements
24:18 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:18 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:18 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 14 elements
24:18 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:18 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:18 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 14 elements
24:18 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:18 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:18 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.216553 (min) 0.51127 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.491483 (min) 0.268228 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0 (min) 0.137777 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 12.4495 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 6.67914 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 32.6402 (min) 10000 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.50772 (min) 10 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.2274 (min) 34 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000273937 (min) 0.00117298 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:18 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:18 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:18 DEBUG   opendrift:694: No elements hit coastline.
24:18 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:18 DEBUG   opendrift:1679: 14 elements scheduled for deactivation (missing_data)
24:18 DEBUG   opendrift:1681:        (z: -31.688725 to -1.225464)
24:18 DEBUG   opendrift:1699: Removed 14 elements.
24:18 DEBUG   opendrift:1702: Removed 14 values from environment.
24:18 DEBUG   opendrift:1707: remove items from profile for z
24:18 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:18 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:18 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:18 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:18 DEBUG   opendrift:1711: Removed 14 values from environment_profiles.
24:18 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:18 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:18 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:18 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
24:18 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 0 0 0]
24:18 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3 3 3]
24:18 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 446.   0.]
 [  0.   0.   0.   0.   0.]
 [220.   0.   0. 538.   0.]
 [  1.   0. 976.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:18 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:18 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:18 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:18 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:18 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.13928813729664438
24:18 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:18 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:18 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:18 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:18 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:18 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:18 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:18 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 15
24:18 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:18 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
24:18 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:18 INFO    opendrift.models.chemicaldrift:1861: partitioning: [202, 0, 269, 1, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:18 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:18 DEBUG   opendrift:2144: 472 active elements (28 deactivated)
24:18 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:18 DEBUG   opendrift:733: No elements hit seafloor.
24:18 DEBUG   opendrift:2055: ======================================================================
24:18 INFO    opendrift:2056: 2025-03-05 07:22:43.574110 - step 83 of 96 - 472 active elements (28 deactivated)
24:18 DEBUG   opendrift:2062: 0 elements scheduled.
24:18 DEBUG   opendrift:2064: ======================================================================
24:18 DEBUG   opendrift:2075:                57.66298027580948 <- latitude  -> 57.785238140278516
24:18 DEBUG   opendrift:2080:                10.831630867655846 <- longitude -> 11.177885851048764
24:18 DEBUG   opendrift:2085:                -43.060877750206814   <- z ->   0.0
24:18 DEBUG   opendrift:2086: ---------------------------------
24:18 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:18 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:18 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:18 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:18 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:18 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 472 elements
24:18 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 465 elements
24:18 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 07:00:00 (before)
                2025-03-05 08:00:00 (after)
24:19 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:19 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:19 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:19 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:19 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:19 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:19 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 42x32x7) for time after (2025-03-05 08:00:00)
24:19 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 07:00:00) in space  (linearNDFast)
24:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:19 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 08:00:00) in space  (linearNDFast)
24:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:19 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 07:00:00, weight 0.62) and
                      after (2025-03-05 08:00:00, weight 0.38) in time
24:19 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.16838012060697 and -58.8221250976808 degrees.
24:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.16838012060697 and -58.8221250976808 degrees.
24:19 DEBUG   opendrift.readers.basereader.variables:836: Masking 7 elements outside coverage
24:19 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 7 elements.
24:19 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:19 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:19 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 472 elements
24:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 472 elements
24:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:19 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:19 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:19 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:19 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 472 elements
24:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 472 elements
24:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:19 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:19 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:19 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:19 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 7 elements
24:19 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 7 elements
24:19 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 7 elements
24:19 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 7 elements
24:19 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:19 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 7 elements
24:19 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:19 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:19 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 7 elements
24:19 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:19 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:19 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 7 elements
24:19 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:19 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:19 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.233713 (min) 0.515437 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.482407 (min) 0.273278 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0 (min) 0.133175 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 12.2648 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 6.65866 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 32.6726 (min) 10000 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.50095 (min) 10 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.245 (min) 34 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000236121 (min) 0.00111244 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:19 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:19 DEBUG   opendrift:694: No elements hit coastline.
24:19 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:19 DEBUG   opendrift:1679: 7 elements scheduled for deactivation (missing_data)
24:19 DEBUG   opendrift:1681:        (z: -21.604413 to -0.143115)
24:19 DEBUG   opendrift:1699: Removed 7 elements.
24:19 DEBUG   opendrift:1702: Removed 7 values from environment.
24:19 DEBUG   opendrift:1707: remove items from profile for z
24:19 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:19 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:19 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:19 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:19 DEBUG   opendrift:1711: Removed 7 values from environment_profiles.
24:19 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:19 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:19 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:19 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
24:19 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 2 0 2]
24:19 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 0 3 0]
24:19 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 449.   0.]
 [  0.   0.   0.   0.   0.]
 [223.   0.   0. 538.   0.]
 [  1.   0. 982.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:19 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:19 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:19 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.13552373738124127
24:19 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:19 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:19 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:19 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:19 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
24:19 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
24:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:19 INFO    opendrift.models.chemicaldrift:1861: partitioning: [196, 0, 269, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:19 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:19 DEBUG   opendrift:2144: 465 active elements (35 deactivated)
24:19 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:19 DEBUG   opendrift:733: No elements hit seafloor.
24:19 DEBUG   opendrift:2055: ======================================================================
24:19 INFO    opendrift:2056: 2025-03-05 07:52:43.574110 - step 84 of 96 - 465 active elements (35 deactivated)
24:19 DEBUG   opendrift:2062: 0 elements scheduled.
24:19 DEBUG   opendrift:2064: ======================================================================
24:19 DEBUG   opendrift:2075:                57.65531519066166 <- latitude  -> 57.78461840938504
24:19 DEBUG   opendrift:2080:                10.839276130162673 <- longitude -> 11.181530423583792
24:19 DEBUG   opendrift:2085:                -42.9872112509384   <- z ->   0.0
24:19 DEBUG   opendrift:2086: ---------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:19 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:19 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 465 elements
24:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 456 elements
24:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 07:00:00 (before)
                2025-03-05 08:00:00 (after)
24:19 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 07:00:00) in space  (linearNDFast)
24:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:19 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 08:00:00) in space  (linearNDFast)
24:19 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:19 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 07:00:00, weight 0.12) and
                      after (2025-03-05 08:00:00, weight 0.88) in time
24:19 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.16073487015417 and -58.833455026065145 degrees.
24:19 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.16073487015417 and -58.833455026065145 degrees.
24:19 DEBUG   opendrift.readers.basereader.variables:836: Masking 9 elements outside coverage
24:19 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 9 elements.
24:19 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:19 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:19 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 465 elements
24:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 465 elements
24:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:19 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:19 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:19 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:19 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 465 elements
24:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 465 elements
24:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:19 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:19 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:19 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:19 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:19 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 9 elements
24:19 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 9 elements
24:19 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 9 elements
24:19 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 9 elements
24:19 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:19 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 9 elements
24:19 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:19 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:19 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 9 elements
24:19 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:19 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:19 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 9 elements
24:19 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:19 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:19 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.254514 (min) 0.44184 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.473309 (min) 0.277921 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0 (min) 0.122073 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 12.2014 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 6.51117 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 32.6567 (min) 10000 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.49119 (min) 10 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.3786 (min) 34 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000208637 (min) 0.00118523 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:19 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:19 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:19 DEBUG   opendrift:694: No elements hit coastline.
24:19 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:19 DEBUG   opendrift:1679: 9 elements scheduled for deactivation (missing_data)
24:19 DEBUG   opendrift:1681:        (z: -42.987211 to -9.216937)
24:19 DEBUG   opendrift:1699: Removed 9 elements.
24:19 DEBUG   opendrift:1702: Removed 9 values from environment.
24:19 DEBUG   opendrift:1707: remove items from profile for z
24:19 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:19 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:19 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:19 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:19 DEBUG   opendrift:1711: Removed 9 values from environment_profiles.
24:19 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:19 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
24:19 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:19 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 12
24:19 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 2 2 0 0 0 2 0 0 0]
24:19 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 0 3 3 3 0 3 3 3]
24:19 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 458.   0.]
 [  0.   0.   0.   0.   0.]
 [226.   0.   0. 538.   0.]
 [  1.   0. 986.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:19 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:19 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:19 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.13298635508942683
24:19 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:19 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:19 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:19 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 11
24:19 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements
24:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:19 INFO    opendrift.models.chemicaldrift:1861: partitioning: [184, 0, 272, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:19 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:19 DEBUG   opendrift:2144: 456 active elements (44 deactivated)
24:19 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:19 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:19 DEBUG   opendrift:2055: ======================================================================
24:19 INFO    opendrift:2056: 2025-03-05 08:22:43.574110 - step 85 of 96 - 456 active elements (44 deactivated)
24:19 DEBUG   opendrift:2062: 0 elements scheduled.
24:19 DEBUG   opendrift:2064: ======================================================================
24:19 DEBUG   opendrift:2075:                57.6498733979403 <- latitude  -> 57.78406152422157
24:19 DEBUG   opendrift:2080:                10.84658308970177 <- longitude -> 11.16994612133644
24:19 DEBUG   opendrift:2085:                -39.56235597762758   <- z ->   0.0
24:19 DEBUG   opendrift:2086: ---------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:19 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:19 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:19 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 456 elements
24:19 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 453 elements
24:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 08:00:00 (before)
                2025-03-05 09:00:00 (after)
24:21 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:21 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:21 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:21 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:21 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:21 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:21 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 45x30x7) for time after (2025-03-05 09:00:00)
24:21 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 08:00:00) in space  (linearNDFast)
24:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:21 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 09:00:00) in space  (linearNDFast)
24:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:21 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 08:00:00, weight 0.62) and
                      after (2025-03-05 09:00:00, weight 0.38) in time
24:21 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.153427921515544 and -58.83006483308521 degrees.
24:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.153427921515544 and -58.83006483308521 degrees.
24:21 DEBUG   opendrift.readers.basereader.variables:836: Masking 3 elements outside coverage
24:21 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 3 elements.
24:21 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:21 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:21 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 456 elements
24:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 456 elements
24:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:21 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:21 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:21 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:21 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 456 elements
24:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 456 elements
24:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:21 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:21 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:21 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:21 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 3 elements
24:21 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 3 elements
24:21 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 3 elements
24:21 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 3 elements
24:21 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:21 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 3 elements
24:21 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:21 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:21 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 3 elements
24:21 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:21 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:21 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 3 elements
24:21 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:21 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:21 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.275224 (min) 0.437154 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.455482 (min) 0.278115 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0 (min) 0.100333 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 12.5239 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 6.32542 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 32.4684 (min) 10000 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.48413 (min) 10 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.4933 (min) 34 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000214183 (min) 0.00154662 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:21 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:21 DEBUG   opendrift:694: No elements hit coastline.
24:21 DEBUG   opendrift:733: No elements hit seafloor.
24:21 DEBUG   opendrift:1679: 3 elements scheduled for deactivation (missing_data)
24:21 DEBUG   opendrift:1681:        (z: -14.584866 to -2.546055)
24:21 DEBUG   opendrift:1699: Removed 3 elements.
24:21 DEBUG   opendrift:1702: Removed 3 values from environment.
24:21 DEBUG   opendrift:1707: remove items from profile for z
24:21 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:21 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:21 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:21 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:21 DEBUG   opendrift:1711: Removed 3 values from environment_profiles.
24:21 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:21 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
24:21 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:21 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
24:21 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 0 0 2 2 0 2]
24:21 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 3 0 0 3 0]
24:21 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 463.   0.]
 [  0.   0.   0.   0.   0.]
 [230.   0.   0. 538.   0.]
 [  1.   0. 995.   0.   0.]
 [  0.   0.   0.   0.   0.]]
24:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:21 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:21 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:21 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.13918225181025193
24:21 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:21 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:21 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:21 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:21 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:21 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:21 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:21 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:21 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:21 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:21 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:21 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:21 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9
24:21 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
24:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:21 INFO    opendrift.models.chemicaldrift:1861: partitioning: [182, 0, 271, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:21 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:21 DEBUG   opendrift:2144: 453 active elements (47 deactivated)
24:21 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:21 DEBUG   opendrift:733: No elements hit seafloor.
24:21 DEBUG   opendrift:2055: ======================================================================
24:21 INFO    opendrift:2056: 2025-03-05 08:52:43.574110 - step 86 of 96 - 453 active elements (47 deactivated)
24:21 DEBUG   opendrift:2062: 0 elements scheduled.
24:21 DEBUG   opendrift:2064: ======================================================================
24:21 DEBUG   opendrift:2075:                57.643155823085 <- latitude  -> 57.784006496671786
24:21 DEBUG   opendrift:2080:                10.85242690062987 <- longitude -> 11.173514959234588
24:21 DEBUG   opendrift:2085:                -38.95228252816318   <- z ->   0.0
24:21 DEBUG   opendrift:2086: ---------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:21 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:21 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 453 elements
24:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 443 elements
24:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 08:00:00 (before)
                2025-03-05 09:00:00 (after)
24:21 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 08:00:00) in space  (linearNDFast)
24:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:21 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 09:00:00) in space  (linearNDFast)
24:21 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:21 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 08:00:00, weight 0.12) and
                      after (2025-03-05 09:00:00, weight 0.88) in time
24:21 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.14758408803925 and -58.82649599508441 degrees.
24:21 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.14758408803925 and -58.82649599508441 degrees.
24:21 DEBUG   opendrift.readers.basereader.variables:836: Masking 10 elements outside coverage
24:21 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 10 elements.
24:21 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:21 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:21 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 453 elements
24:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 453 elements
24:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:21 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:21 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:21 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:21 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 453 elements
24:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 453 elements
24:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:21 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:21 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:21 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:21 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:21 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 10 elements
24:21 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 10 elements
24:21 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 10 elements
24:21 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 10 elements
24:21 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:21 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 10 elements
24:21 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:21 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:21 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 10 elements
24:21 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:21 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:21 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 10 elements
24:21 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:21 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:21 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.292601 (min) 0.470649 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.441611 (min) 0.284622 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0 (min) 0.0756796 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 12.9437 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 6.14104 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 32.5341 (min) 10000 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.46304 (min) 10 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.3926 (min) 34 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000178399 (min) 0.00172986 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:21 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:21 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:21 DEBUG   opendrift:694: No elements hit coastline.
24:21 DEBUG   opendrift:733: No elements hit seafloor.
24:21 DEBUG   opendrift:1679: 10 elements scheduled for deactivation (missing_data)
24:21 DEBUG   opendrift:1681:        (z: -33.835772 to -1.282293)
24:21 DEBUG   opendrift:1699: Removed 10 elements.
24:21 DEBUG   opendrift:1702: Removed 10 values from environment.
24:21 DEBUG   opendrift:1707: remove items from profile for z
24:21 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:21 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:21 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:21 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:21 DEBUG   opendrift:1711: Removed 10 values from environment_profiles.
24:21 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:21 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
24:21 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:21 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 10
24:21 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0]
24:21 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3]
24:21 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  473.    0.]
 [   0.    0.    0.    0.    0.]
 [ 230.    0.    0.  538.    0.]
 [   1.    0. 1000.    0.    0.]
 [   0.    0.    0.    0.    0.]]
24:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:21 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:21 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:21 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.14785250509259407
24:21 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:21 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:21 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:21 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:21 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:21 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:21 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:21 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:21 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:21 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:21 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:21 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:21 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:21 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 11
24:21 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 10 elements
24:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:21 INFO    opendrift.models.chemicaldrift:1861: partitioning: [165, 0, 278, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:21 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:21 DEBUG   opendrift:2144: 443 active elements (57 deactivated)
24:21 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:21 DEBUG   opendrift:733: No elements hit seafloor.
24:21 DEBUG   opendrift:2055: ======================================================================
24:21 INFO    opendrift:2056: 2025-03-05 09:22:43.574110 - step 87 of 96 - 443 active elements (57 deactivated)
24:21 DEBUG   opendrift:2062: 0 elements scheduled.
24:21 DEBUG   opendrift:2064: ======================================================================
24:21 DEBUG   opendrift:2075:                57.652926458514614 <- latitude  -> 57.78405884915004
24:21 DEBUG   opendrift:2080:                10.860870825461314 <- longitude -> 11.176353440159474
24:21 DEBUG   opendrift:2085:                -38.72621207754743   <- z ->   0.0
24:21 DEBUG   opendrift:2086: ---------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:21 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:21 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:21 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 443 elements
24:21 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 438 elements
24:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 09:00:00 (before)
                2025-03-05 10:00:00 (after)
24:23 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:23 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:23 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:23 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:23 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:23 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:23 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 45x29x7) for time after (2025-03-05 10:00:00)
24:23 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 09:00:00) in space  (linearNDFast)
24:23 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:23 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 10:00:00) in space  (linearNDFast)
24:23 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:23 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 09:00:00, weight 0.62) and
                      after (2025-03-05 10:00:00, weight 0.38) in time
24:23 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:23 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.13914018170868 and -58.82365751345823 degrees.
24:23 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.13914018170868 and -58.82365751345823 degrees.
24:23 DEBUG   opendrift.readers.basereader.variables:836: Masking 5 elements outside coverage
24:23 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 5 elements.
24:23 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:23 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:23 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 443 elements
24:23 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 443 elements
24:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:23 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:23 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:23 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:23 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:23 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 443 elements
24:23 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 443 elements
24:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:23 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:23 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:23 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:23 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:23 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 5 elements
24:23 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 5 elements
24:23 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 5 elements
24:23 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 5 elements
24:23 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:23 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 5 elements
24:23 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:23 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:23 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 5 elements
24:23 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:23 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:23 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 5 elements
24:23 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:23 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:23 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.307273 (min) 0.477215 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.421594 (min) 0.277738 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: 0 (min) 0.0463958 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 13.2267 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 6.28924 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 32.3247 (min) 10000 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.45294 (min) 10 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.2776 (min) 34 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.0001742 (min) 0.00173997 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:23 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:23 DEBUG   opendrift:694: No elements hit coastline.
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift:1679: 5 elements scheduled for deactivation (missing_data)
24:23 DEBUG   opendrift:1681:        (z: -36.927636 to -0.658551)
24:23 DEBUG   opendrift:1699: Removed 5 elements.
24:23 DEBUG   opendrift:1702: Removed 5 values from environment.
24:23 DEBUG   opendrift:1707: remove items from profile for z
24:23 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:23 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:23 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:23 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:23 DEBUG   opendrift:1711: Removed 5 values from environment_profiles.
24:23 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:23 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
24:23 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:23 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
24:23 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2]
24:23 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0]
24:23 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[0.00e+00 0.00e+00 0.00e+00 4.74e+02 0.00e+00]
 [0.00e+00 0.00e+00 0.00e+00 0.00e+00 0.00e+00]
 [2.33e+02 0.00e+00 0.00e+00 5.38e+02 0.00e+00]
 [1.00e+00 0.00e+00 1.01e+03 0.00e+00 0.00e+00]
 [0.00e+00 0.00e+00 0.00e+00 0.00e+00 0.00e+00]]
24:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:23 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:23 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:23 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.15494888034633664
24:23 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:23 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:23 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:23 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
24:23 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
24:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:23 INFO    opendrift.models.chemicaldrift:1861: partitioning: [163, 0, 275, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:23 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:23 DEBUG   opendrift:2144: 438 active elements (62 deactivated)
24:23 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift:2055: ======================================================================
24:23 INFO    opendrift:2056: 2025-03-05 09:52:43.574110 - step 88 of 96 - 438 active elements (62 deactivated)
24:23 DEBUG   opendrift:2062: 0 elements scheduled.
24:23 DEBUG   opendrift:2064: ======================================================================
24:23 DEBUG   opendrift:2075:                57.64993492872956 <- latitude  -> 57.78412989520343
24:23 DEBUG   opendrift:2080:                10.864984279915475 <- longitude -> 11.178473758675766
24:23 DEBUG   opendrift:2085:                -38.60935694467567   <- z ->   0.0
24:23 DEBUG   opendrift:2086: ---------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:23 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:23 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 438 elements
24:23 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 432 elements
24:23 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 09:00:00 (before)
                2025-03-05 10:00:00 (after)
24:23 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 09:00:00) in space  (linearNDFast)
24:23 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:23 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 10:00:00) in space  (linearNDFast)
24:23 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:23 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 09:00:00, weight 0.12) and
                      after (2025-03-05 10:00:00, weight 0.88) in time
24:23 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:23 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.13502671301555 and -58.82153718520571 degrees.
24:23 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.13502671301555 and -58.82153718520571 degrees.
24:23 DEBUG   opendrift.readers.basereader.variables:836: Masking 6 elements outside coverage
24:23 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 6 elements.
24:23 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:23 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:23 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 438 elements
24:23 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 438 elements
24:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:23 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:23 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:23 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:23 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:23 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 438 elements
24:23 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 438 elements
24:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:23 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:23 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:23 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:23 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:23 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 6 elements
24:23 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 6 elements
24:23 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 6 elements
24:23 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 6 elements
24:23 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:23 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 6 elements
24:23 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:23 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:23 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 6 elements
24:23 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:23 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:23 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 6 elements
24:23 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:23 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:23 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.318921 (min) 0.463061 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.406036 (min) 0.276619 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0170244 (min) 0.0155791 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 13.4689 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 6.53538 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 31.966 (min) 10000 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.38695 (min) 10 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.4457 (min) 34 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000143057 (min) 0.00171458 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:23 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:23 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:23 DEBUG   opendrift:694: No elements hit coastline.
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift:1679: 6 elements scheduled for deactivation (missing_data)
24:23 DEBUG   opendrift:1681:        (z: -23.818694 to 0.000000)
24:23 DEBUG   opendrift:1699: Removed 6 elements.
24:23 DEBUG   opendrift:1702: Removed 6 values from environment.
24:23 DEBUG   opendrift:1707: remove items from profile for z
24:23 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:23 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:23 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:23 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:23 DEBUG   opendrift:1711: Removed 6 values from environment_profiles.
24:23 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:23 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
24:23 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:23 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 12
24:23 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 0 0 2 0 2 0 2 2]
24:23 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3 3 0 3 0 3 0 0]
24:23 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[0.000e+00 0.000e+00 0.000e+00 4.810e+02 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]
 [2.380e+02 0.000e+00 0.000e+00 5.380e+02 0.000e+00]
 [1.000e+00 0.000e+00 1.011e+03 0.000e+00 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]]
24:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:23 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:23 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:23 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.16150926151685355
24:23 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:23 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:23 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:23 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:23 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:23 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:23 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 8
24:23 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 8 elements
24:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:23 INFO    opendrift.models.chemicaldrift:1861: partitioning: [157, 0, 275, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:23 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:23 DEBUG   opendrift:2144: 432 active elements (68 deactivated)
24:23 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:23 DEBUG   opendrift:733: No elements hit seafloor.
24:23 DEBUG   opendrift:2055: ======================================================================
24:23 INFO    opendrift:2056: 2025-03-05 10:22:43.574110 - step 89 of 96 - 432 active elements (68 deactivated)
24:23 DEBUG   opendrift:2062: 0 elements scheduled.
24:23 DEBUG   opendrift:2064: ======================================================================
24:23 DEBUG   opendrift:2075:                57.6438873581548 <- latitude  -> 57.78443841487868
24:23 DEBUG   opendrift:2080:                10.869016947372028 <- longitude -> 11.179324864579204
24:23 DEBUG   opendrift:2085:                -38.9534924939821   <- z ->   0.0
24:23 DEBUG   opendrift:2086: ---------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:23 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:23 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:23 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 432 elements
24:23 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 426 elements
24:23 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 10:00:00 (before)
                2025-03-05 11:00:00 (after)
24:25 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:25 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:25 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:25 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:25 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:25 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:25 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 46x29x7) for time after (2025-03-05 11:00:00)
24:25 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 10:00:00) in space  (linearNDFast)
24:25 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:25 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 11:00:00) in space  (linearNDFast)
24:25 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:25 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 10:00:00, weight 0.62) and
                      after (2025-03-05 11:00:00, weight 0.38) in time
24:25 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:25 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.13099405373433 and -58.82068608809774 degrees.
24:25 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.13099405373433 and -58.82068608809774 degrees.
24:25 DEBUG   opendrift.readers.basereader.variables:836: Masking 6 elements outside coverage
24:25 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 6 elements.
24:25 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:25 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:25 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 432 elements
24:25 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 432 elements
24:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:25 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:25 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:25 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:25 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:25 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 432 elements
24:25 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 432 elements
24:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:25 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:25 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:25 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:25 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:25 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 6 elements
24:25 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 6 elements
24:25 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 6 elements
24:25 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 6 elements
24:25 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:25 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 6 elements
24:25 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:25 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:25 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 6 elements
24:25 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:25 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:25 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 6 elements
24:25 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:25 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:25 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.327894 (min) 0.432563 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.396407 (min) 0.28165 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0541194 (min) 0 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 13.8046 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 6.25553 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 31.757 (min) 10000 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.39906 (min) 10 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.1729 (min) 34 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000185845 (min) 0.00154858 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:25 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:25 DEBUG   opendrift:694: No elements hit coastline.
24:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:25 DEBUG   opendrift:1679: 6 elements scheduled for deactivation (missing_data)
24:25 DEBUG   opendrift:1681:        (z: -25.982682 to 0.000000)
24:25 DEBUG   opendrift:1699: Removed 6 elements.
24:25 DEBUG   opendrift:1702: Removed 6 values from environment.
24:25 DEBUG   opendrift:1707: remove items from profile for z
24:25 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:25 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:25 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:25 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:25 DEBUG   opendrift:1711: Removed 6 values from environment_profiles.
24:25 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:25 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
24:25 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:25 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
24:25 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 0 0 2 2]
24:25 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 3 3 0 0]
24:25 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[0.000e+00 0.000e+00 0.000e+00 4.840e+02 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]
 [2.420e+02 0.000e+00 0.000e+00 5.390e+02 0.000e+00]
 [1.000e+00 0.000e+00 1.019e+03 0.000e+00 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]]
24:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:25 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:25 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:25 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.16544070856729756
24:25 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:25 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:25 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:25 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 10 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 11 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 12 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 13 elements to seafloor.
24:25 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 13
24:25 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 13 elements
24:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:25 INFO    opendrift.models.chemicaldrift:1861: partitioning: [155, 0, 271, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:25 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:25 DEBUG   opendrift:2144: 426 active elements (74 deactivated)
24:25 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:25 DEBUG   opendrift:733: No elements hit seafloor.
24:25 DEBUG   opendrift:2055: ======================================================================
24:25 INFO    opendrift:2056: 2025-03-05 10:52:43.574110 - step 90 of 96 - 426 active elements (74 deactivated)
24:25 DEBUG   opendrift:2062: 0 elements scheduled.
24:25 DEBUG   opendrift:2064: ======================================================================
24:25 DEBUG   opendrift:2075:                57.64359375039485 <- latitude  -> 57.784967128713255
24:25 DEBUG   opendrift:2080:                10.873649551661543 <- longitude -> 11.17973967818831
24:25 DEBUG   opendrift:2085:                -39.25744538280463   <- z ->   0.0
24:25 DEBUG   opendrift:2086: ---------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:25 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:25 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 426 elements
24:25 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 419 elements
24:25 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 10:00:00 (before)
                2025-03-05 11:00:00 (after)
24:25 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 10:00:00) in space  (linearNDFast)
24:25 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:25 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 11:00:00) in space  (linearNDFast)
24:25 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:25 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 10:00:00, weight 0.12) and
                      after (2025-03-05 11:00:00, weight 0.88) in time
24:25 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:25 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.12636144942264 and -58.820271266860416 degrees.
24:25 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.12636144942264 and -58.820271266860416 degrees.
24:25 DEBUG   opendrift.readers.basereader.variables:836: Masking 7 elements outside coverage
24:25 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 7 elements.
24:25 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:25 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:25 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 426 elements
24:25 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 426 elements
24:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:25 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:25 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:25 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:25 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:25 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 426 elements
24:25 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 426 elements
24:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:25 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:25 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:25 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:25 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:25 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 7 elements
24:25 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 7 elements
24:25 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 7 elements
24:25 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 7 elements
24:25 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:25 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 7 elements
24:25 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:25 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:25 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 7 elements
24:25 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:25 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:25 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 7 elements
24:25 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:25 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:25 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.330674 (min) 0.491181 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.35219 (min) 0.289685 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.0943039 (min) 0 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 14.1401 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 5.80224 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 31.5117 (min) 10000 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.39605 (min) 10 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.3864 (min) 34 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000140582 (min) 0.00148641 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:25 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:25 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:25 DEBUG   opendrift:694: No elements hit coastline.
24:25 DEBUG   opendrift:733: No elements hit seafloor.
24:25 DEBUG   opendrift:1679: 7 elements scheduled for deactivation (missing_data)
24:25 DEBUG   opendrift:1681:        (z: -28.062888 to 0.000000)
24:25 DEBUG   opendrift:1699: Removed 7 elements.
24:25 DEBUG   opendrift:1702: Removed 7 values from environment.
24:25 DEBUG   opendrift:1707: remove items from profile for z
24:25 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:25 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:25 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:25 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:25 DEBUG   opendrift:1711: Removed 7 values from environment_profiles.
24:25 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:25 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
24:25 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:25 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 2
24:25 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2]
24:25 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0]
24:25 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[0.000e+00 0.000e+00 0.000e+00 4.850e+02 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]
 [2.430e+02 0.000e+00 0.000e+00 5.490e+02 0.000e+00]
 [1.000e+00 0.000e+00 1.032e+03 0.000e+00 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]]
24:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:25 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:25 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:25 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.16845728693936743
24:25 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:25 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:25 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:25 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:25 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:25 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:25 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:25 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
24:25 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
24:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:25 INFO    opendrift.models.chemicaldrift:1861: partitioning: [151, 0, 268, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:25 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:25 DEBUG   opendrift:2144: 419 active elements (81 deactivated)
24:25 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:25 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:25 DEBUG   opendrift:2055: ======================================================================
24:25 INFO    opendrift:2056: 2025-03-05 11:22:43.574110 - step 91 of 96 - 419 active elements (81 deactivated)
24:25 DEBUG   opendrift:2062: 0 elements scheduled.
24:25 DEBUG   opendrift:2064: ======================================================================
24:25 DEBUG   opendrift:2075:                57.63839073004796 <- latitude  -> 57.785487964003366
24:25 DEBUG   opendrift:2080:                10.878886530636896 <- longitude -> 11.179964104513207
24:25 DEBUG   opendrift:2085:                -39.34830583074554   <- z ->   0.0
24:25 DEBUG   opendrift:2086: ---------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:25 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:25 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:25 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 419 elements
24:25 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 417 elements
24:25 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 11:00:00 (before)
                2025-03-05 12:00:00 (after)
24:27 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:27 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:27 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:27 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:27 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:27 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:27 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 47x28x7) for time after (2025-03-05 12:00:00)
24:27 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 11:00:00) in space  (linearNDFast)
24:27 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:27 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 12:00:00) in space  (linearNDFast)
24:27 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:27 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 11:00:00, weight 0.62) and
                      after (2025-03-05 12:00:00, weight 0.38) in time
24:27 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:27 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.1211244721163 and -58.82004684440121 degrees.
24:27 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.1211244721163 and -58.82004684440121 degrees.
24:27 DEBUG   opendrift.readers.basereader.variables:836: Masking 2 elements outside coverage
24:27 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 2 elements.
24:27 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:27 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:27 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 419 elements
24:27 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 419 elements
24:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:27 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:27 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:27 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:27 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:27 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 419 elements
24:27 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 419 elements
24:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:27 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:27 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:27 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:27 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:27 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 2 elements
24:27 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 2 elements
24:27 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 2 elements
24:27 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 2 elements
24:27 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:27 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 2 elements
24:27 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:27 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:27 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 2 elements
24:27 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:27 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:27 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 2 elements
24:27 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:27 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:27 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.330251 (min) 0.561765 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.344236 (min) 0.310439 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.137635 (min) 0 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 13.9988 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 5.73839 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 31.3259 (min) 10000 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.41419 (min) 10 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.8695 (min) 34 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000144618 (min) 0.00135327 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:27 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:27 DEBUG   opendrift:694: No elements hit coastline.
24:27 DEBUG   opendrift:733: No elements hit seafloor.
24:27 DEBUG   opendrift:1679: 2 elements scheduled for deactivation (missing_data)
24:27 DEBUG   opendrift:1681:        (z: -13.387726 to -1.409338)
24:27 DEBUG   opendrift:1699: Removed 2 elements.
24:27 DEBUG   opendrift:1702: Removed 2 values from environment.
24:27 DEBUG   opendrift:1707: remove items from profile for z
24:27 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:27 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:27 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:27 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:27 DEBUG   opendrift:1711: Removed 2 values from environment_profiles.
24:27 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:27 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
24:27 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:27 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
24:27 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 0 2 2 0]
24:27 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 3 0 0 3]
24:27 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[0.000e+00 0.000e+00 0.000e+00 4.880e+02 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]
 [2.470e+02 0.000e+00 0.000e+00 5.540e+02 0.000e+00]
 [1.000e+00 0.000e+00 1.038e+03 0.000e+00 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]]
24:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:27 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:27 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:27 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.16516208484810266
24:27 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:27 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:27 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:27 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
24:27 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
24:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:27 INFO    opendrift.models.chemicaldrift:1861: partitioning: [150, 0, 267, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:27 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:27 DEBUG   opendrift:2144: 417 active elements (83 deactivated)
24:27 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:27 DEBUG   opendrift:733: No elements hit seafloor.
24:27 DEBUG   opendrift:2055: ======================================================================
24:27 INFO    opendrift:2056: 2025-03-05 11:52:43.574110 - step 92 of 96 - 417 active elements (83 deactivated)
24:27 DEBUG   opendrift:2062: 0 elements scheduled.
24:27 DEBUG   opendrift:2064: ======================================================================
24:27 DEBUG   opendrift:2075:                57.635016579444 <- latitude  -> 57.78612440731046
24:27 DEBUG   opendrift:2080:                10.885518995219872 <- longitude -> 11.18060395589659
24:27 DEBUG   opendrift:2085:                -39.272367796370396   <- z ->   0.0
24:27 DEBUG   opendrift:2086: ---------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:27 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:27 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 417 elements
24:27 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 413 elements
24:27 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 11:00:00 (before)
                2025-03-05 12:00:00 (after)
24:27 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 11:00:00) in space  (linearNDFast)
24:27 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:27 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 12:00:00) in space  (linearNDFast)
24:27 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:27 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 11:00:00, weight 0.12) and
                      after (2025-03-05 12:00:00, weight 0.88) in time
24:27 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:27 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.11449199642517 and -58.819406991514576 degrees.
24:27 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.11449199642517 and -58.819406991514576 degrees.
24:27 DEBUG   opendrift.readers.basereader.variables:836: Masking 4 elements outside coverage
24:27 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 4 elements.
24:27 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:27 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:27 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 417 elements
24:27 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 417 elements
24:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:27 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:27 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:27 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:27 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:27 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 417 elements
24:27 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 417 elements
24:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:27 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:27 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:27 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:27 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:27 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 4 elements
24:27 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 4 elements
24:27 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 4 elements
24:27 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 4 elements
24:27 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:27 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 4 elements
24:27 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:27 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:27 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 4 elements
24:27 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:27 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:27 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 4 elements
24:27 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:27 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:27 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.304995 (min) 0.511797 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.29536 (min) 0.330155 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.181327 (min) 0 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 13.7508 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 5.79736 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 31.072 (min) 10000 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.41213 (min) 10 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.0939 (min) 34 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.00014627 (min) 0.00133274 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:27 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:27 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:27 DEBUG   opendrift:694: No elements hit coastline.
24:27 DEBUG   opendrift:733: No elements hit seafloor.
24:27 DEBUG   opendrift:1679: 4 elements scheduled for deactivation (missing_data)
24:27 DEBUG   opendrift:1681:        (z: -31.744518 to -0.264654)
24:27 DEBUG   opendrift:1699: Removed 4 elements.
24:27 DEBUG   opendrift:1702: Removed 4 values from environment.
24:27 DEBUG   opendrift:1707: remove items from profile for z
24:27 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:27 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:27 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:27 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:27 DEBUG   opendrift:1711: Removed 4 values from environment_profiles.
24:27 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:27 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
24:27 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:27 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
24:27 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0]
24:27 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3]
24:27 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[0.000e+00 0.000e+00 0.000e+00 4.910e+02 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]
 [2.480e+02 0.000e+00 0.000e+00 5.570e+02 0.000e+00]
 [1.000e+00 0.000e+00 1.044e+03 0.000e+00 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]]
24:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:27 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:27 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:27 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.16055821270829307
24:27 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:27 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:27 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:27 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:27 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:27 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:27 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:27 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7
24:27 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 7 elements
24:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:27 INFO    opendrift.models.chemicaldrift:1861: partitioning: [146, 0, 267, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:27 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:27 DEBUG   opendrift:2144: 413 active elements (87 deactivated)
24:27 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:27 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:27 DEBUG   opendrift:2055: ======================================================================
24:27 INFO    opendrift:2056: 2025-03-05 12:22:43.574110 - step 93 of 96 - 413 active elements (87 deactivated)
24:27 DEBUG   opendrift:2062: 0 elements scheduled.
24:27 DEBUG   opendrift:2064: ======================================================================
24:27 DEBUG   opendrift:2075:                57.63027285663674 <- latitude  -> 57.78913169384973
24:27 DEBUG   opendrift:2080:                10.890441337738416 <- longitude -> 11.184158254106574
24:27 DEBUG   opendrift:2085:                -39.58172818069519   <- z ->   0.0
24:27 DEBUG   opendrift:2086: ---------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:27 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:27 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:27 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 413 elements
24:27 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 408 elements
24:27 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 12:00:00 (before)
                2025-03-05 13:00:00 (after)
24:29 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:29 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:29 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:29 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:29 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:29 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:29 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 49x27x7) for time after (2025-03-05 13:00:00)
24:29 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 12:00:00) in space  (linearNDFast)
24:29 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:29 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 13:00:00) in space  (linearNDFast)
24:29 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:29 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 12:00:00, weight 0.62) and
                      after (2025-03-05 13:00:00, weight 0.38) in time
24:29 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.1095696578227 and -58.81585269776716 degrees.
24:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.1095696578227 and -58.81585269776716 degrees.
24:29 DEBUG   opendrift.readers.basereader.variables:836: Masking 5 elements outside coverage
24:29 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 5 elements.
24:29 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:29 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:29 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 413 elements
24:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 413 elements
24:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:29 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:29 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:29 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:29 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 413 elements
24:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 413 elements
24:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:29 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:29 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:29 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:29 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 5 elements
24:29 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 5 elements
24:29 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 5 elements
24:29 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 5 elements
24:29 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:29 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 5 elements
24:29 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:29 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:29 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 5 elements
24:29 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:29 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:29 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 5 elements
24:29 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:29 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:29 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.29454 (min) 0.560119 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.24461 (min) 0.35117 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.218808 (min) 0 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 13.7046 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 5.7837 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 31.1509 (min) 10000 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.41017 (min) 10 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.4891 (min) 34 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000154078 (min) 0.00120959 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:29 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:29 DEBUG   opendrift:694: No elements hit coastline.
24:29 DEBUG   opendrift:733: No elements hit seafloor.
24:29 DEBUG   opendrift:1679: 5 elements scheduled for deactivation (missing_data)
24:29 DEBUG   opendrift:1681:        (z: -27.061512 to -7.047267)
24:29 DEBUG   opendrift:1699: Removed 5 elements.
24:29 DEBUG   opendrift:1702: Removed 5 values from environment.
24:29 DEBUG   opendrift:1707: remove items from profile for z
24:29 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:29 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:29 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:29 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:29 DEBUG   opendrift:1711: Removed 5 values from environment_profiles.
24:29 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:29 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
24:29 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:29 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
24:29 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2]
24:29 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0]
24:29 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[0.000e+00 0.000e+00 0.000e+00 4.910e+02 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]
 [2.520e+02 0.000e+00 0.000e+00 5.610e+02 0.000e+00]
 [1.000e+00 0.000e+00 1.051e+03 0.000e+00 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]]
24:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:29 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:29 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:29 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.15982051651755294
24:29 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:29 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:29 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:29 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 1 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:29 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
24:29 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
24:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:29 INFO    opendrift.models.chemicaldrift:1861: partitioning: [148, 0, 259, 1, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:29 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:29 DEBUG   opendrift:2144: 408 active elements (92 deactivated)
24:29 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:29 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:29 DEBUG   opendrift:2055: ======================================================================
24:29 INFO    opendrift:2056: 2025-03-05 12:52:43.574110 - step 94 of 96 - 408 active elements (92 deactivated)
24:29 DEBUG   opendrift:2062: 0 elements scheduled.
24:29 DEBUG   opendrift:2064: ======================================================================
24:29 DEBUG   opendrift:2075:                57.633313127373114 <- latitude  -> 57.79269741959219
24:29 DEBUG   opendrift:2080:                10.895812909376605 <- longitude -> 11.182924329008475
24:29 DEBUG   opendrift:2085:                -40.01446900329927   <- z ->   0.0
24:29 DEBUG   opendrift:2086: ---------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:29 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:29 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 408 elements
24:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 406 elements
24:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 12:00:00 (before)
                2025-03-05 13:00:00 (after)
24:29 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 12:00:00) in space  (linearNDFast)
24:29 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:29 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 13:00:00) in space  (linearNDFast)
24:29 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:29 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 12:00:00, weight 0.12) and
                      after (2025-03-05 13:00:00, weight 0.88) in time
24:29 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.104198078063725 and -58.817086633592496 degrees.
24:29 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.104198078063725 and -58.817086633592496 degrees.
24:29 DEBUG   opendrift.readers.basereader.variables:836: Masking 2 elements outside coverage
24:29 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 2 elements.
24:29 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:29 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:29 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 408 elements
24:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 408 elements
24:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:29 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:29 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:29 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:29 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 408 elements
24:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 408 elements
24:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:29 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:29 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:29 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:29 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:29 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 2 elements
24:29 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 2 elements
24:29 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 2 elements
24:29 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 2 elements
24:29 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:29 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 2 elements
24:29 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:29 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:29 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 2 elements
24:29 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:29 DEBUG   opendrift.models.basemodel.environment:813:         ...plus 1 individual points in other profiles
24:29 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 2 elements
24:29 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:29 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:29 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.329259 (min) 0.523918 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.234823 (min) 0.359598 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.253984 (min) 0 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 13.6945 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 5.78068 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 31.0176 (min) 10000 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.41326 (min) 10 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 30.7732 (min) 34 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.00017754 (min) 0.0012427 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:29 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:29 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:29 DEBUG   opendrift:694: No elements hit coastline.
24:29 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:29 DEBUG   opendrift:1679: 2 elements scheduled for deactivation (missing_data)
24:29 DEBUG   opendrift:1681:        (z: -25.048442 to -14.570710)
24:29 DEBUG   opendrift:1699: Removed 2 elements.
24:29 DEBUG   opendrift:1702: Removed 2 values from environment.
24:29 DEBUG   opendrift:1707: remove items from profile for z
24:29 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:29 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:29 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:29 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:29 DEBUG   opendrift:1711: Removed 2 values from environment_profiles.
24:29 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:29 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:29 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:29 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
24:29 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 2 2]
24:29 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 0 0]
24:29 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[0.000e+00 0.000e+00 0.000e+00 4.930e+02 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]
 [2.550e+02 0.000e+00 0.000e+00 5.680e+02 0.000e+00]
 [1.000e+00 0.000e+00 1.057e+03 0.000e+00 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]]
24:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:29 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:29 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:29 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.15964700158406345
24:29 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:29 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:29 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:29 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 6 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 8 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
24:29 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:29 DEBUG   opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
24:29 DEBUG   opendrift:738: Lifting 9 elements to seafloor.
24:29 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 8
24:29 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 8 elements
24:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:29 INFO    opendrift.models.chemicaldrift:1861: partitioning: [148, 0, 257, 1, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:29 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:29 DEBUG   opendrift:2144: 406 active elements (94 deactivated)
24:29 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:29 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:29 DEBUG   opendrift:2055: ======================================================================
24:29 INFO    opendrift:2056: 2025-03-05 13:22:43.574110 - step 95 of 96 - 406 active elements (94 deactivated)
24:29 DEBUG   opendrift:2062: 0 elements scheduled.
24:29 DEBUG   opendrift:2064: ======================================================================
24:29 DEBUG   opendrift:2075:                57.62969810146929 <- latitude  -> 57.79641884915111
24:29 DEBUG   opendrift:2080:                10.899138544023856 <- longitude -> 11.183289132263313
24:29 DEBUG   opendrift:2085:                -40.79095458984375   <- z ->   0.0
24:29 DEBUG   opendrift:2086: ---------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:29 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:29 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:29 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 406 elements
24:29 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 406 elements
24:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 13:00:00 (before)
                2025-03-05 14:00:00 (after)
24:31 DEBUG   opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
24:31 DEBUG   opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
24:31 DEBUG   opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
24:31 DEBUG   opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
24:31 DEBUG   opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
24:31 DEBUG   opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity']
24:31 DEBUG   opendrift.readers.basereader.structured:315: Fetched env-block (size 49x27x7) for time after (2025-03-05 14:00:00)
24:31 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 13:00:00) in space  (linearNDFast)
24:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:31 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 14:00:00) in space  (linearNDFast)
24:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:31 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 13:00:00, weight 0.62) and
                      after (2025-03-05 14:00:00, weight 0.38) in time
24:31 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.1008724432362 and -58.8167218162034 degrees.
24:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.1008724432362 and -58.8167218162034 degrees.
24:31 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:31 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:31 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:31 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 406 elements
24:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 406 elements
24:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:31 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:31 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:31 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:31 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 406 elements
24:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 406 elements
24:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:31 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:31 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:31 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:31 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:31 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 0 profiles
24:31 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 0 profiles
24:31 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:31 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:31 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.305521 (min) 0.620277 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.231508 (min) 0.379081 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.278789 (min) -0.239868 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 11.3215 (min) 13.4915 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 4.11344 (min) 5.74862 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 30.9381 (min) 51.5359 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.41864 (min) 6.34678 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 29.8314 (min) 33.5071 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000179127 (min) 0.00136288 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:31 DEBUG   opendrift:694: No elements hit coastline.
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift:1695: No elements to deactivate
24:31 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:31 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:31 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:31 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
24:31 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 2]
24:31 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 0]
24:31 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[0.000e+00 0.000e+00 0.000e+00 4.940e+02 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]
 [2.580e+02 0.000e+00 0.000e+00 5.740e+02 0.000e+00]
 [1.000e+00 0.000e+00 1.065e+03 0.000e+00 0.000e+00]
 [0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00]]
24:31 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
24:31 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:31 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
24:31 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:31 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.15538989099645
24:31 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:31 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:31 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:31 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 5 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 7 elements to seafloor.
24:31 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
24:31 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:31 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
24:31 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:31 INFO    opendrift.models.chemicaldrift:1861: partitioning: [150, 0, 254, 2, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:31 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:31 DEBUG   opendrift:2144: 406 active elements (94 deactivated)
24:31 DEBUG   opendrift:874: to be seeded: 0, already seeded 500
24:31 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:31 DEBUG   opendrift:2055: ======================================================================
24:31 INFO    opendrift:2056: 2025-03-05 13:52:43.574110 - step 96 of 96 - 406 active elements (94 deactivated)
24:31 DEBUG   opendrift:2062: 0 elements scheduled.
24:31 DEBUG   opendrift:2064: ======================================================================
24:31 DEBUG   opendrift:2075:                57.62595642100399 <- latitude  -> 57.80048487630728
24:31 DEBUG   opendrift:2080:                10.899138544023856 <- longitude -> 11.187173442965612
24:31 DEBUG   opendrift:2085:                -40.927606515615985   <- z ->   0.0
24:31 DEBUG   opendrift:2086: ---------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
24:31 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:601: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
24:31 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 406 elements
24:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 405 elements
24:31 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2025-03-05 13:00:00 (before)
                2025-03-05 14:00:00 (after)
24:31 DEBUG   opendrift.readers.basereader.structured:336: Interpolating before (2025-03-05 13:00:00) in space  (linearNDFast)
24:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:31 DEBUG   opendrift.readers.basereader.structured:342: Interpolating after (2025-03-05 14:00:00) in space  (linearNDFast)
24:31 DEBUG   opendrift.readers.interpolation.structured:97: Initialising interpolator.
24:31 DEBUG   opendrift.readers.basereader.structured:357: Interpolating before (2025-03-05 13:00:00, weight 0.12) and
                      after (2025-03-05 14:00:00, weight 0.88) in time
24:31 DEBUG   opendrift.readers.basereader.structured:370: Interpolating profiles in time
24:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.1008724514359 and -58.81283750397771 degrees.
24:31 DEBUG   opendrift.readers.basereader.variables:100: Rotating vectors between -59.1008724514359 and -58.81283750397771 degrees.
24:31 DEBUG   opendrift.readers.basereader.variables:836: Masking 1 elements outside coverage
24:31 DEBUG   opendrift.models.basemodel.environment:755: Data missing for 1 elements.
24:31 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['ocean_mixed_layer_thickness']
24:31 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:601: Calling reader constant_reader
24:31 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 406 elements
24:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 406 elements
24:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:31 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:31 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:31 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:31 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 406 elements
24:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 406 elements
24:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:31 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:31 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:31 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:31 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for sea_surface_height for 1 elements
24:31 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for x_wind for 1 elements
24:31 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for y_wind for 1 elements
24:31 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10000 for sea_floor_depth_below_sea_level for 1 elements
24:31 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
24:31 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 10 for sea_water_temperature for 1 elements
24:31 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 10 for sea_water_temperature for 1 profiles
24:31 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 34 for sea_water_salinity for 1 elements
24:31 DEBUG   opendrift.models.basemodel.environment:802:       Using fallback value 34 for sea_water_salinity for 1 profiles
24:31 DEBUG   opendrift.models.basemodel.environment:779:     Using fallback value 0 for upward_sea_water_velocity for 1 elements
24:31 DEBUG   opendrift.models.basemodel.environment:791:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
24:31 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:31 DEBUG   opendrift.models.basemodel.environment:893:     x_sea_water_velocity: -0.302834 (min) 0.58555 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     y_sea_water_velocity: -0.19413 (min) 0.392003 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_surface_height: -0.300408 (min) 0 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     x_wind: 0 (min) 13.2259 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     y_wind: 0 (min) 5.77202 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_floor_depth_below_sea_level: 30.9381 (min) 10000 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_temperature: 5.45645 (min) 10 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_salinity: 31.0664 (min) 34 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     upward_sea_water_velocity: -0.000181171 (min) 0.00139503 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     spm: 1 (min) 1 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     doc: 0 (min) 0 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:893:     pH_sediment: 6.9 (min) 6.9 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:31 WARNING opendrift:2357: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
24:31 DEBUG   opendrift:694: No elements hit coastline.
24:31 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:31 DEBUG   opendrift:1679: 1 elements scheduled for deactivation (missing_data)
24:31 DEBUG   opendrift:1681:        (z: -18.157598 to -18.157598)
24:31 DEBUG   opendrift:1699: Removed 1 elements.
24:31 DEBUG   opendrift:1702: Removed 1 values from environment.
24:31 DEBUG   opendrift:1707: remove items from profile for z
24:31 DEBUG   opendrift:1707: remove items from profile for sea_water_salinity
24:31 DEBUG   opendrift:1707: remove items from profile for sea_water_temperature
24:31 DEBUG   opendrift:1707: remove items from profile for ocean_vertical_diffusivity
24:31 DEBUG   opendrift:1707: remove items from profile for sea_water_ph_reported_on_total_scale
24:31 DEBUG   opendrift:1711: Removed 1 values from environment_profiles.
24:31 DEBUG   opendrift:2129: Calling ChemicalDrift.update()
24:31 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
24:31 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
24:31 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 0
24:31 DEBUG   opendrift.models.oceandrift:428: Using functional expression for diffusivity
24:31 DEBUG   opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.14990169569801381
24:31 DEBUG   opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
24:31 DEBUG   opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
24:31 DEBUG   opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
24:31 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 2 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 3 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:31 DEBUG   opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
24:31 DEBUG   opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
24:31 DEBUG   opendrift:738: Lifting 4 elements to seafloor.
24:31 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
24:31 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
24:31 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
24:31 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
24:31 INFO    opendrift.models.chemicaldrift:1861: partitioning: [149, 0, 255, 1, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
24:31 DEBUG   opendrift:1646: Horizontal diffusivity is 0, no random walk.
24:31 DEBUG   opendrift:2144: 405 active elements (95 deactivated)
24:31 DEBUG   opendrift:2173: Cleaning up
24:31 DEBUG   opendrift.models.basemodel.environment:595: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
24:31 DEBUG   opendrift.models.basemodel.environment:597: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:601: Calling reader global_landmask
24:31 DEBUG   opendrift.models.basemodel.environment:602: ----------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:618: Data needed for 405 elements
24:31 DEBUG   opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 405 elements
24:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
24:31 DEBUG   opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
24:31 DEBUG   opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
24:31 DEBUG   opendrift.models.basemodel.environment:752: Obtained data for all elements.
24:31 DEBUG   opendrift.models.basemodel.environment:765: ---------------------------------------
24:31 DEBUG   opendrift.models.basemodel.environment:766: Finished processing all variable groups
24:31 DEBUG   opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
24:31 DEBUG   opendrift.models.basemodel.environment:893:     land_binary_mask: 0 (min) 0 (max)
24:31 DEBUG   opendrift.models.basemodel.environment:895: ---------------------------------
24:31 DEBUG   opendrift:694: No elements hit coastline.
24:31 DEBUG   opendrift:2256: Updating minval and maxval
24:31 DEBUG   opendrift:2336: Writing to file
24:31 DEBUG   opendrift:1695: No elements to deactivate
24:31 DEBUG   opendrift:100: Changed mode from Mode.Run to Mode.Result

Print and plot results

print('Final speciation:')
for isp,sp in enumerate(o.name_species):
    print ('{:32}: {:>6}'.format(sp,sum(o.elements.specie==isp)))

print('Number of transformations:')
for isp in range(o.nspecies):
    print('{}'.format(['{:>9}'.format(np.int32(item)) for item in o.ntransformations[isp,:]]) )

m_pre = o.result.mass.isel(time=-1).sum()
m_deg = o.result.mass_degraded.isel(time=-1).sum()
m_vol = o.result.mass_volatilized.isel(time=-1).sum()
m_tot = m_pre + m_deg + m_vol

print('Mass budget for target chemical:')
print('mass preserved       : {:.3f}'.format(m_pre * 1e-6),' g   {:.3f}'.format(m_pre/m_tot*100),'%')
print('mass degraded        : {:.3f}'.format(m_deg * 1e-6),' g   {:.3f}'.format(m_deg/m_tot*100),'%')
print('mass volatilized     : {:.3f}'.format(m_vol * 1e-6),' g   {:.3f}'.format(m_vol/m_tot*100),'%')

legend=['dissolved', '', 'SPM', 'sediment', '']

o.animation_profile(color='specie',
            markersize='mass',
            markersize_scaling=30,
            alpha=.5,
            vmin=0,vmax=o.nspecies-1,
            legend = legend,
            legend_loc = 3,
            fps = 10
            )

Final speciation:
LMM                             :    149
Humic colloid                   :      0
Particle reversible             :    255
Sediment reversible             :      1
Sediment slowly reversible      :      0
Number of transformations:
['        0', '        0', '        0', '      494', '        0']
['        0', '        0', '        0', '        0', '        0']
['      258', '        0', '        0', '      581', '        0']
['        1', '        0', '     1073', '        0', '        0']
['        0', '        0', '        0', '        0', '        0']
Mass budget for target chemical:
mass preserved       : 0.471  g   58.089 %
mass degraded        : 0.334  g   41.269 %
mass volatilized     : 0.005  g   0.642 %
14:24:31 DEBUG   opendrift:3043: Saving animation..
14:24:31 INFO    opendrift:4600: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_0.gif...
14:24:44 DEBUG   opendrift:4638: MPLBACKEND = agg
14:24:44 DEBUG   opendrift:4639: DISPLAY = None
14:24:44 DEBUG   opendrift:4640: Time to save animation: 0:00:13.330727
14:24:44 INFO    opendrift:3246: Time to make animation: 0:00:13.543393

o.animation(color='specie',
            markersize='mass',
            markersize_scaling=100,
            alpha=.5,
            vmin=0,vmax=o.nspecies-1,
            colorbar=False,
            fast = True,
            legend = legend,
            legend_loc = 3,
            fps=10
            )

24:44 DEBUG   opendrift:2398: Setting up map: corners=None, fast=True, lscale=None
24:44 WARNING opendrift:2429: Plotting fast. This will make your plots less accurate.
24:46 DEBUG   opendrift:3043: Saving animation..
24:46 INFO    opendrift:4600: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_1.gif...
26:00 DEBUG   opendrift:4638: MPLBACKEND = agg
26:00 DEBUG   opendrift:4639: DISPLAY = None
26:00 DEBUG   opendrift:4640: Time to save animation: 0:01:13.903459
26:00 INFO    opendrift:3036: Time to make animation: 0:01:15.514072

o.plot_mass(legend = legend,
            time_unit = 'hours',
            title = 'Chemical mass budget')

14:26:00 WARNING opendrift:4413: Method get_property is obsolete and will soon be removed. Use o.result.<property> instead.
14:26:00 WARNING opendrift:4413: Method get_property is obsolete and will soon be removed. Use o.result.<property> instead.
dissolved : 0.12426540624999999g (26.41011954976948%)
SPM : 0.34549556249999996g (73.42815176721682%)
sediment : 0.0007609689331054688g (0.16172868301370855%)
/root/project/opendrift/models/chemicaldrift.py:3007: UserWarning: set_ticklabels() should only be used with a fixed number of ticks, i.e. after set_ticks() or using a FixedLocator.
  ax.axes.get_xaxis().set_ticklabels(np.round(ax.axes.get_xticks() * time_conversion_factor))

Total running time of the script: (3 minutes 25.243 seconds)

Gallery generated by Sphinx-Gallery