ChemicalDrift - Transport and fate of organic compounds

from opendrift.readers import reader_netCDF_CF_generic
from opendrift.models.chemicaldrift import ChemicalDrift
from opendrift.readers.reader_constant import Reader as ConstantReader
from datetime import timedelta, datetime
import matplotlib.pyplot as plt
import numpy as np


o = ChemicalDrift(loglevel=0, seed=0)

# Norkyst
reader_norkyst = reader_netCDF_CF_generic.Reader('https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be')
mixed_layer = ConstantReader({'ocean_mixed_layer_thickness': 40})
o.add_reader([reader_norkyst,mixed_layer])

o.set_config('drift:vertical_mixing', True)
o.set_config('vertical_mixing:diffusivitymodel', 'windspeed_Large1994')
o.set_config('chemical:particle_diameter',30.e-6)  # m
o.set_config('chemical:particle_diameter_uncertainty',5.e-6) # m
o.set_config('chemical:sediment:resuspension_critvel',0.15) # m/s
o.set_config('chemical:transformations:volatilization', True)
o.set_config('chemical:transformations:degradation', True)
o.set_config('chemical:transformations:degradation_mode', 'OverallRateConstants')
o.set_config('seed:LMM_fraction',.9)
o.set_config('seed:particle_fraction',.1)
o.set_config('general:coastline_action', 'previous')

o.init_chemical_compound("Phenanthrene")

# Modify half-life times with unrealistic values for this demo
o.set_config('chemical:transformations:t12_W_tot', 6.) # hours
o.set_config('chemical:transformations:t12_S_tot', 12.) # hours

o.list_configspec()
14:08:02 DEBUG   opendrift.config:168: Adding 17 config items from __init__
14:08:02 DEBUG   opendrift.config:178:   Overwriting config item readers:max_number_of_fails
14:08:02 DEBUG   opendrift.config:168: Adding 13 config items from __init__
14:08:02 INFO    opendrift.models.basemodel:507: OpenDriftSimulation initialised (version 1.11.2 / v1.11.2-69-gb16198b)
14:08:02 DEBUG   opendrift.config:168: Adding 15 config items from oceandrift
14:08:02 DEBUG   opendrift.config:178:   Overwriting config item seed:z
14:08:02 DEBUG   opendrift.config:168: Adding 71 config items from chemicaldrift
14:08:02 INFO    opendrift.readers.reader_netCDF_CF_generic:102: Opening dataset: https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:08 DEBUG   opendrift.readers.reader_netCDF_CF_generic:119: Finding coordinate variables.
14:08:08 DEBUG   opendrift.readers.reader_netCDF_CF_generic:134: Parsing CF grid mapping dictionary: {'grid_mapping_name': 'polar_stereographic', 'straight_vertical_longitude_from_pole': 70.0, 'latitude_of_projection_origin': 90.0, 'standard_parallel': 60.0, 'false_easting': 3192800.0, 'false_northing': 1784000.0, 'semi_major_axis': 6378137.0, 'semi_minor_axis': 6356752.3142, 'proj4': '+proj=stere +lat_0=90 +lat_ts=60 +lon_0=70 +x_0=3192800 +y_0=1784000 +a=6378137 +b=6356752.3142 +units=m +no_defs +type=crs'}
14:08:08 INFO    opendrift.readers.reader_netCDF_CF_generic:314: Detected dimensions: {'x': 'X', 'y': 'Y', 'z': 'depth', 'time': 'time'}
14:08:08 DEBUG   opendrift.readers.reader_netCDF_CF_generic:340: Skipped variables without standard_name: ['angle', 'tke', 'ubar', 'vbar']
14:08:08 DEBUG   opendrift.readers.basereader.variables:608: Setting buffer size 25 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 5 m/s and time span of 1:00:00
14:08:08 DEBUG   opendrift.readers.basereader:176: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
14:08:08 DEBUG   opendrift.readers.basereader.variables:563: Adding variable mapping: ['x_wind', 'y_wind'] -> wind_speed
14:08:08 DEBUG   opendrift.readers.basereader.variables:563: Adding variable mapping: ['x_sea_water_velocity', 'y_sea_water_velocity'] -> sea_water_speed
14:08:08 DEBUG   opendrift.readers.basereader:176: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
14:08:08 DEBUG   opendrift.models.basemodel.environment:328: Added reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:08 DEBUG   opendrift.models.basemodel.environment:328: Added reader constant_reader
environment:constant:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:sea_surface_height [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_surface_height [0] float min: None, max: None [None] Fallback value for s...
environment:constant:x_wind         [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:x_wind         [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:y_wind         [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:y_wind         [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:fallback:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:constant:sea_floor_depth_below_sea_level [None] float min: -20, max: 12000 [None] Depth of seafloor...
environment:fallback:sea_floor_depth_below_sea_level [10000] float min: -20, max: 12000 [None] Depth of seafloor...
environment:constant:ocean_vertical_diffusivity [None] float min: 0, max: 1 [None] Use constant value f...
environment:fallback:ocean_vertical_diffusivity [0.0001] float min: 0, max: 1 [None] Fallback value for o...
environment:constant:sea_water_temperature [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_temperature [10] float min: None, max: None [None] Fallback value for s...
environment:constant:sea_water_salinity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_salinity [34] float min: None, max: None [None] Fallback value for s...
environment:constant:upward_sea_water_velocity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:upward_sea_water_velocity [0] float min: None, max: None [None] Fallback value for u...
environment:constant:spm            [None] float min: None, max: None [None] Use constant value f...
environment:fallback:spm            [1] float min: None, max: None [None] Fallback value for s...
environment:constant:ocean_mixed_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:ocean_mixed_layer_thickness [50] float min: None, max: None [None] Fallback value for o...
environment:constant:active_sediment_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:active_sediment_layer_thickness [0.03] float min: None, max: None [None] Fallback value for a...
environment:constant:doc            [None] float min: None, max: None [None] Use constant value f...
environment:fallback:doc            [0.0] float min: None, max: None [None] Fallback value for d...
environment:constant:sea_water_ph_reported_on_total_scale [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_ph_reported_on_total_scale [8.1] float min: None, max: None [None] Fallback value for s...
environment:constant:pH_sediment    [None] float min: None, max: None [None] Use constant value f...
environment:fallback:pH_sediment    [6.9] float min: None, max: None [None] Fallback value for p...
general:use_auto_landmask           [True] bool   A built-in GSHHG glo...
drift:current_uncertainty           [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:current_uncertainty_uniform   [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:max_speed                     [2.0] float min: 0, max: inf [seconds] Typical maximum spee...
readers:max_number_of_fails         [1] int   min: 0, max: 1000000.0 [number] Readers are discarde...
general:simulation_name             [] str   min length 0, max length 64 Name of simulation...
general:coastline_action            [previous] enum  ['none', 'stranding', 'previous'] None means that obje...
general:time_step_minutes           [60] float min: 0.01, max: 1440 [minutes] Calculation time ste...
general:time_step_output_minutes    [None] float min: 1, max: 1440 [minutes] Output time step, i....
seed:ocean_only                     [True] bool   If True, elements se...
seed:number                         [1] int   min: 1, max: 100000000 [1] The number of elemen...
drift:max_age_seconds               [None] float min: 0, max: inf [seconds] Elements will be dea...
drift:advection_scheme              [euler] enum  ['euler', 'runge-kutta', 'runge-kutta4'] Numerical advection ...
drift:horizontal_diffusivity        [0] float min: 0, max: 100000 [m2/s] Add horizontal diffu...
drift:profiles_depth                [50] float min: 0, max: None [meters] Environment profiles...
drift:wind_uncertainty              [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:relative_wind                 [False] bool   If True, wind drift ...
drift:deactivate_north_of           [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_south_of           [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_east_of            [None] float min: -360, max: 360 [degrees] Elements are deactiv...
drift:deactivate_west_of            [None] float min: -360, max: 360 [degrees] Elements are deactiv...
seed:origin_marker                  [0] float min: None, max: None [None] An integer kept cons...
seed:z                              [0] float min: -10000, max: 0 [m] Depth below sea leve...
seed:wind_drift_factor              [0.02] float min: None, max: None [1] Elements at surface ...
seed:current_drift_factor           [1] float min: None, max: None [1] Elements are moved w...
seed:terminal_velocity              [0.0] float min: None, max: None [m/s] Terminal rise/sinkin...
seed:diameter                       [0.0] float min: None, max: None [m] Seeding value of dia...
seed:density                        [2650.0] float min: None, max: None [kg/m^3] Seeding value of den...
seed:specie                         [0] float min: None, max: None [] Seeding value of spe...
seed:mass                           [1000.0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded                  [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_water            [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_sediment         [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_volatilized               [0] float min: None, max: None [ug] Seeding value of mas...
drift:vertical_advection            [True] bool   Advect elements with...
drift:vertical_mixing               [True] bool   Activate vertical mi...
vertical_mixing:timestep            [60] float min: 0.1, max: 3600 [seconds] Time step used for i...
vertical_mixing:diffusivitymodel    [windspeed_Large1994] enum  ['environment', 'stepfunction', 'windspeed_Sundby1983', 'windspeed_Large1994', 'gls_tke', 'constant'] Algorithm/source use...
vertical_mixing:background_diffusivity [1.2e-05] float min: 0, max: 1 [m2s-1] Background diffusivi...
vertical_mixing:TSprofiles          [False] bool   Update T and S profi...
drift:wind_drift_depth              [0.1] float min: 0, max: 10 [meters] The direct wind drif...
drift:stokes_drift                  [True] bool   Advection elements w...
drift:stokes_drift_profile          [Phillips] enum  ['monochromatic', 'exponential', 'Phillips', 'windsea_swell'] Algorithm to calcula...
drift:use_tabularised_stokes_drift  [False] bool   If True, Stokes drif...
drift:tabularised_stokes_drift_fetch [25000] enum  ['5000', '25000', '50000'] The fetch length whe...
general:seafloor_action             [lift_to_seafloor] enum  ['none', 'lift_to_seafloor', 'deactivate', 'previous'] "deactivate": elemen...
drift:truncate_ocean_model_below_m  [None] float min: 0, max: 10000 [m] Ocean model data are...
seed:seafloor                       [False] bool   Elements are seeded ...
chemical:transfer_setup             [organics] enum  ['Sandnesfj_Al', 'metals', '137Cs_rev', 'custom', 'organics'] ...
chemical:dynamic_partitioning       [True] bool   Toggle dynamic parti...
chemical:slowly_fraction            [False] bool   ...
chemical:irreversible_fraction      [False] bool   ...
chemical:dissolved_diameter         [0] float min: 0, max: 0.0001 [m] ...
chemical:particle_diameter          [3e-05] float min: 0, max: 0.0001 [m] ...
chemical:particle_concentration_half_depth [20] float min: 0, max: 100 [m] ...
chemical:doc_concentration_half_depth [1000] float min: 0, max: 1000 [m] ...
chemical:particle_diameter_uncertainty [5e-06] float min: 0, max: 0.0001 [m] ...
seed:LMM_fraction                   [0.9] float min: 0, max: 1 [] ...
seed:particle_fraction              [0.1] float min: 0, max: 1 [] ...
chemical:species:LMM                [True] bool   Toggle LMM species...
chemical:species:LMMcation          [False] bool   ...
chemical:species:LMManion           [False] bool   ...
chemical:species:Colloid            [False] bool   ...
chemical:species:Humic_colloid      [False] bool   ...
chemical:species:Polymer            [False] bool   ...
chemical:species:Particle_reversible [True] bool   ...
chemical:species:Particle_slowly_reversible [False] bool   ...
chemical:species:Particle_irreversible [False] bool   ...
chemical:species:Sediment_reversible [True] bool   ...
chemical:species:Sediment_slowly_reversible [False] bool   ...
chemical:species:Sediment_irreversible [False] bool   ...
chemical:transformations:Kd         [2.0] float min: 0, max: 1000000000.0 [m3/kg] ...
chemical:transformations:S0         [0.0] float min: 0, max: 100 [PSU] parameter controllin...
chemical:transformations:Dc         [1.16e-05] float min: 0, max: 1000000.0 [] ...
chemical:transformations:slow_coeff [0] float min: 0, max: 1000000.0 [] ...
chemical:transformations:volatilization [True] bool   Chemical is evaporat...
chemical:transformations:degradation [True] bool   Chemical mass is deg...
chemical:transformations:degradation_mode [OverallRateConstants] enum  ['OverallRateConstants'] ...
chemical:transformations:dissociation [nondiss] enum  ['nondiss', 'acid', 'base', 'amphoter'] ...
chemical:transformations:LogKOW     [4.505] float min: -3, max: 10 [Log L/Kg] ...
chemical:transformations:TrefKOW    [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_KOC_Sed [-24900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:DeltaH_KOC_DOM [-25900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:Setchenow  [0.3026] float min: 0, max: 1 [L/mol] ...
chemical:transformations:pKa_acid   [-1] float min: -1, max: 14 [] ...
chemical:transformations:pKa_base   [-1] float min: -1, max: 14 [] ...
chemical:transformations:KOC_DOM    [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:KOC_sed    [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:fOC_SPM    [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:fOC_sed    [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:aggregation_rate [0] float min: 0, max: 1 [s-1] ...
chemical:transformations:t12_W_tot  [6.0] float min: 1, max: None [hours] half life in water, ...
chemical:transformations:Tref_kWt   [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kWt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:t12_S_tot  [12.0] float min: 1, max: None [hours] half life in sedimen...
chemical:transformations:Tref_kSt   [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kSt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:MolWt      [178.226] float min: 50, max: 1000 [amu] molecular weight...
chemical:transformations:Henry      [4.294e-05] float min: None, max: None [atm m3 mol-1] Henry constant...
chemical:transformations:Vpress     [0.0222] float min: None, max: None [Pa] Vapour pressure...
chemical:transformations:Tref_Vpress [25.0] float min: None, max: None [C] Vapour pressure ref ...
chemical:transformations:DeltaH_Vpress [71733.0] float min: -100000.0, max: 115000.0 [J/mol] Enthalpy of volatili...
chemical:transformations:Solub      [1.09] float min: None, max: None [g/m3] Solubility...
chemical:transformations:Tref_Solub [25.0] float min: None, max: None [C] Solubility ref temp...
chemical:transformations:DeltaH_Solub [34800.0] float min: -100000.0, max: 100000.0 [J/mol] Enthalpy of solubili...
chemical:sediment:mixing_depth      [0.03] float min: 0, max: 100 [m] ...
chemical:sediment:density           [2600] float min: 0, max: 10000 [kg/m3] ...
chemical:sediment:effective_fraction [0.9] float min: 0, max: 1 [] ...
chemical:sediment:corr_factor       [0.1] float min: 0, max: 10 [] ...
chemical:sediment:porosity          [0.6] float min: 0, max: 1 [] ...
chemical:sediment:layer_thickness   [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth  [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth [1] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_critvel [0.15] float min: 0, max: 1 [m/s] ...
chemical:sediment:burial_rate       [3e-05] float min: 0, max: 10 [m/year] ...
chemical:sediment:buried_leaking_rate [0] float min: 0, max: 10 [s-1] ...
chemical:compound                   [Phenanthrene] enum  ['Naphthalene', 'Phenanthrene', 'Fluoranthene', 'Benzo-a-anthracene', 'Benzo-a-pyrene', 'Dibenzo-ah-anthracene', 'C1-Naphthalene', 'Acenaphthene', 'Acenaphthylene', 'Fluorene', 'Dibenzothiophene', 'C2-Naphthalene', 'Anthracene', 'C3-Naphthalene', 'C1-Dibenzothiophene', 'Pyrene', 'C1-Phenanthrene', 'C2-Dibenzothiophene', 'C2-Phenanthrene', 'Benzo-b-fluoranthene', 'Chrysene', 'C3-Dibenzothiophene', 'C3-Phenanthrene', 'Benzo-k-fluoranthene', 'Benzo-ghi-perylene', 'Indeno-123cd-pyrene', 'Copper', 'Cadmium', 'Chromium', 'Lead', 'Vanadium', 'Zinc', 'Nickel', None] ...

Seeding 500 lagrangian elements each representign 2mg og target chemical

td=datetime.today()
time = td - timedelta(days=10)

latseed= 57.6;   lonseed= 10.6 # Skagen

ntraj=500
iniz=np.random.rand(ntraj) * -10. # seeding the chemicals in the upper 10m

o.seed_elements(lonseed, latseed, z=iniz, radius=2000,number=ntraj,time=time, mass=2e3)
14:08:08 DEBUG   opendrift.models.chemicaldrift:870: Partitioning coefficients (Tref,freshwater)
14:08:08 DEBUG   opendrift.models.chemicaldrift:871: KOC_sed: 12953.922406542462 L/KgOC
14:08:08 DEBUG   opendrift.models.chemicaldrift:872: KOC_SPM: 12953.922406542462 L/KgOC
14:08:08 DEBUG   opendrift.models.chemicaldrift:873: KOC_DOM: 3004.29439651874 L/KgOC
14:08:08 DEBUG   opendrift.models.chemicaldrift:885: Kd_sed: 647.6961203271231 L/Kg
14:08:08 DEBUG   opendrift.models.chemicaldrift:886: Kd_SPM: 647.6961203271231 L/Kg
14:08:08 DEBUG   opendrift.models.chemicaldrift:887: Kd_DOM: 1580.2588525688573 L/Kg
14:08:08 DEBUG   opendrift.models.chemicaldrift:1104: nspecies: 5
14:08:08 DEBUG   opendrift.models.chemicaldrift:1105: Transfer rates:
 [[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
  0.00000000e+00]
 [4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
  0.00000000e+00]
 [9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
  0.00000000e+00]
 [9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
  3.16887646e-11]
 [0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
  0.00000000e+00]]
14:08:08 DEBUG   opendrift.models.chemicaldrift:509: Initial partitioning:
14:08:08 DEBUG   opendrift.models.chemicaldrift:511:       449   0 LMM
14:08:08 DEBUG   opendrift.models.chemicaldrift:511:         0   1 Humic colloid
14:08:08 DEBUG   opendrift.models.chemicaldrift:511:        51   2 Particle reversible
14:08:08 DEBUG   opendrift.models.chemicaldrift:511:         0   3 Sediment reversible
14:08:08 DEBUG   opendrift.models.chemicaldrift:511:         0   4 Sediment slowly reversible
14:08:08 INFO    opendrift.models.basemodel.environment:218: Adding a dynamical landmask with max. priority based on assumed maximum speed of 2.0 m/s. Adding a customised landmask may be faster...
14:08:08 DEBUG   opendrift.readers.basereader:176: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
14:08:13 DEBUG   opendrift.models.basemodel.environment:328: Added reader global_landmask
14:08:13 INFO    opendrift.models.basemodel.environment:245: Fallback values will be used for the following variables which have no readers:
14:08:13 INFO    opendrift.models.basemodel.environment:248:    sea_surface_height: 0.000000
14:08:13 INFO    opendrift.models.basemodel.environment:248:    ocean_vertical_diffusivity: 0.000100
14:08:13 INFO    opendrift.models.basemodel.environment:248:    spm: 1.000000
14:08:13 INFO    opendrift.models.basemodel.environment:248:    active_sediment_layer_thickness: 0.030000
14:08:13 INFO    opendrift.models.basemodel.environment:248:    doc: 0.000000
14:08:13 INFO    opendrift.models.basemodel.environment:248:    sea_water_ph_reported_on_total_scale: 8.100000
14:08:13 INFO    opendrift.models.basemodel.environment:248:    pH_sediment: 6.900000
14:08:13 DEBUG   opendrift.models.basemodel:92: Changed mode from Mode.Config to Mode.Ready

Running model

o.run(steps=48*2, time_step=1800, time_step_output=1800)
14:08:13 DEBUG   opendrift.models.basemodel:92: Changed mode from Mode.Ready to Mode.Run
14:08:13 DEBUG   opendrift.models.basemodel:1725:
------------------------------------------------------
Software and hardware:
  OpenDrift version 1.11.2
  Platform: Linux, 5.15.0-1056-aws
  68.5677375793457 GB memory
  36 processors (x86_64)
  NumPy version 1.26.4
  SciPy version 1.13.1
  Matplotlib version 3.8.4
  NetCDF4 version 1.6.1
  Xarray version 2024.5.0
  Python version 3.11.6 | packaged by conda-forge | (main, Oct  3 2023, 10:40:35) [GCC 12.3.0]
------------------------------------------------------

14:08:13 DEBUG   opendrift.models.basemodel:1739: No output file is specified, neglecting export_buffer_length
14:08:13 DEBUG   opendrift.models.basemodel:1857: Finalizing environment and preparing readers for simulation coverage ([4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]) and time (2024-05-25 14:08:08.401515 to 2024-05-27 14:08:08.401515)
14:08:13 DEBUG   opendrift.models.basemodel.environment:180:    Preparing https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]
14:08:13 DEBUG   opendrift.readers.basereader.structured:153: Clearing cache for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be before starting new simulation
14:08:13 DEBUG   opendrift.readers.basereader.variables:608: Setting buffer size 11 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 2 m/s and time span of 1:00:00
14:08:13 DEBUG   opendrift.readers.basereader.variables:549: Nothing more to prepare for https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:13 DEBUG   opendrift.models.basemodel.environment:180:    Preparing constant_reader for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]
14:08:13 DEBUG   opendrift.readers.basereader.variables:549: Nothing more to prepare for constant_reader
14:08:13 DEBUG   opendrift.models.basemodel.environment:180:    Preparing global_landmask for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]
14:08:13 DEBUG   opendrift.readers.basereader.variables:549: Nothing more to prepare for global_landmask
14:08:13 INFO    opendrift.models.basemodel:885: Using existing reader for land_binary_mask
14:08:13 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:13 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:13 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:13 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:13 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:13 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:13 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:13 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:13 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:13 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:13 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:13 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:13 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:13 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:13 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:13 INFO    opendrift.models.basemodel:896: All points are in ocean
14:08:13 INFO    opendrift.models.chemicaldrift:352: Number of species: 5
14:08:13 INFO    opendrift.models.chemicaldrift:354:   0 LMM
14:08:13 INFO    opendrift.models.chemicaldrift:354:   1 Humic colloid
14:08:13 INFO    opendrift.models.chemicaldrift:354:   2 Particle reversible
14:08:13 INFO    opendrift.models.chemicaldrift:354:   3 Sediment reversible
14:08:13 INFO    opendrift.models.chemicaldrift:354:   4 Sediment slowly reversible
14:08:13 INFO    opendrift.models.chemicaldrift:357: transfer setup: organics
14:08:13 INFO    opendrift.models.chemicaldrift:359: nspecies: 5
14:08:13 INFO    opendrift.models.chemicaldrift:360: Transfer rates:
 [[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
  0.00000000e+00]
 [4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
  0.00000000e+00]
 [9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
  0.00000000e+00]
 [9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
  3.16887646e-11]
 [0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
  0.00000000e+00]]
14:08:13 DEBUG   opendrift.models.basemodel:840: to be seeded: 500, already seeded 0
14:08:13 DEBUG   opendrift.models.basemodel:858: Released 500 new elements.
14:08:13 WARNING opendrift.models.basemodel:679: Seafloor check not being run because environment is missing. This will happen the first time the function is run but if it happens subsequently there is probably a problem.
14:08:13 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:13 INFO    opendrift.models.basemodel:1985: 2024-05-25 14:08:08.401515 - step 1 of 96 - 500 active elements (0 deactivated)
14:08:13 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:13 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:13 DEBUG   opendrift.models.basemodel:2004:               57.546223 <- latitude  -> 57.64813
14:08:13 DEBUG   opendrift.models.basemodel:2009:               10.507113 <- longitude -> 10.70608
14:08:13 DEBUG   opendrift.models.basemodel:2014:               -9.98847   <- z ->   -0.046954762
14:08:13 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:13 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:13 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:13 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:13 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:13 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:13 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:13 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:13 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 14:00:00 (before)
                2024-05-25 15:00:00 (after)
14:08:15 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:15 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:15 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:15 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:15 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:15 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:15 DEBUG   opendrift.readers.basereader.structured:291: Fetched env-block (size 36x35x7) for time before (2024-05-25 14:00:00)
14:08:17 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:17 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:17 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:17 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:17 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:17 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:17 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 36x35x7) for time after (2024-05-25 15:00:00)
14:08:17 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 14:00:00) in space  (linearNDFast)
14:08:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:17 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 15:00:00) in space  (linearNDFast)
14:08:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:17 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 14:00:00, weight 0.86) and
                      after (2024-05-25 15:00:00, weight 0.14) in time
14:08:17 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.4929004930107 and -59.29392585710053 degrees.
14:08:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.4929004930107 and -59.29392585710053 degrees.
14:08:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:17 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:17 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:17 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.142539 (min) 0.107022 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0658621 (min) 0.226745 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.15269 (min) -0.34897 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -4.57191 (min) -3.00542 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.53077 (min) 23.882 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 9.38071 (min) 16.2625 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 14.8421 (min) 31.4092 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -2.73028e-05 (min) 3.65502e-05 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:17 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:17 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:17 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:17 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:17 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
14:08:17 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:17 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 1
14:08:17 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2]
14:08:17 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0]
14:08:17 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[0. 0. 0. 0. 0.]
 [0. 0. 0. 0. 0.]
 [1. 0. 0. 0. 0.]
 [0. 0. 0. 0. 0.]
 [0. 0. 0. 0. 0.]]
14:08:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:17 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:17 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:17 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01523105518682681
14:08:17 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:17 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:17 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:17 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:17 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
14:08:17 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:17 INFO    opendrift.models.chemicaldrift:1861: partitioning: [450, 0, 49, 1, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:17 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:17 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:17 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:17 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:17 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:17 INFO    opendrift.models.basemodel:1985: 2024-05-25 14:38:08.401515 - step 2 of 96 - 500 active elements (0 deactivated)
14:08:17 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:17 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:17 DEBUG   opendrift.models.basemodel:2004:               57.54911361235959 <- latitude  -> 57.651063514662255
14:08:17 DEBUG   opendrift.models.basemodel:2009:               10.508126723690587 <- longitude -> 10.703539410401584
14:08:17 DEBUG   opendrift.models.basemodel:2014:               -20.707567213435773   <- z ->   -0.0650209310399138
14:08:17 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:17 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 14:00:00 (before)
                2024-05-25 15:00:00 (after)
14:08:17 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 14:00:00) in space  (linearNDFast)
14:08:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:17 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 15:00:00) in space  (linearNDFast)
14:08:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:17 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 14:00:00, weight 0.36) and
                      after (2024-05-25 15:00:00, weight 0.64) in time
14:08:17 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49188436404088 and -59.296471648630025 degrees.
14:08:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49188436404088 and -59.296471648630025 degrees.
14:08:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:17 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:17 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:17 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.149169 (min) 0.106127 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0212648 (min) 0.199082 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.99379 (min) -0.247008 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -5.0282 (min) -3.3912 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.51262 (min) 23.7035 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.52382 (min) 16.2414 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 14.9616 (min) 32.7965 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -4.19284e-05 (min) 6.53904e-05 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:17 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:17 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:17 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:17 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:17 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:17 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:17 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 21
14:08:17 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0]
14:08:17 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 0 3 3 3]
14:08:17 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[ 0.  0.  0. 20.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 2.  0.  0.  1.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
14:08:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:17 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:17 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:17 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.018664312294759035
14:08:17 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:17 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:17 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:17 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:17 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:17 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
14:08:17 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
14:08:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:17 INFO    opendrift.models.chemicaldrift:1861: partitioning: [431, 0, 48, 21, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:17 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:17 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:17 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:17 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:17 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:17 INFO    opendrift.models.basemodel:1985: 2024-05-25 15:08:08.401515 - step 3 of 96 - 500 active elements (0 deactivated)
14:08:17 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:17 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:17 DEBUG   opendrift.models.basemodel:2004:               57.54902358685644 <- latitude  -> 57.65424015862943
14:08:17 DEBUG   opendrift.models.basemodel:2009:               10.508191238457579 <- longitude -> 10.700431356436132
14:08:17 DEBUG   opendrift.models.basemodel:2014:               -21.212942123413086   <- z ->   -0.11960577299355923
14:08:17 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:17 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 15:00:00 (before)
                2024-05-25 16:00:00 (after)
14:08:19 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:19 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:19 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:19 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:19 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:19 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:19 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 37x34x7) for time after (2024-05-25 16:00:00)
14:08:19 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 15:00:00) in space  (linearNDFast)
14:08:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:19 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 16:00:00) in space  (linearNDFast)
14:08:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:19 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 15:00:00, weight 0.86) and
                      after (2024-05-25 16:00:00, weight 0.14) in time
14:08:19 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49181984386859 and -59.29957970264542 degrees.
14:08:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49181984386859 and -59.29957970264542 degrees.
14:08:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:19 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:19 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:19 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.15184 (min) 0.0829561 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0555139 (min) 0.197369 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.69639 (min) -0.0853495 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -5.52857 (min) -3.80932 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.42502 (min) 23.5119 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.52887 (min) 16.3313 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 14.999 (min) 32.8051 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -5.78055e-05 (min) 4.21354e-05 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:19 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:19 DEBUG   opendrift.models.basemodel:704: Lifting 6 elements to seafloor.
14:08:19 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:19 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:19 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:19 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:19 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 29
14:08:19 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
14:08:19 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
14:08:19 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[ 0.  0.  0. 49.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 2.  0.  0.  2.  0.]
 [ 0.  0.  1.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
14:08:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:19 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:19 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:19 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.022297105574426133
14:08:19 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:19 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:19 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:19 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:19 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:19 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:19 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
14:08:19 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:19 INFO    opendrift.models.chemicaldrift:1861: partitioning: [402, 0, 46, 52, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:19 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:19 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:19 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:19 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:19 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:19 INFO    opendrift.models.basemodel:1985: 2024-05-25 15:38:08.401515 - step 4 of 96 - 500 active elements (0 deactivated)
14:08:19 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:19 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:19 DEBUG   opendrift.models.basemodel:2004:               57.54932868402689 <- latitude  -> 57.65743004580383
14:08:19 DEBUG   opendrift.models.basemodel:2009:               10.506371734039272 <- longitude -> 10.699554132703598
14:08:19 DEBUG   opendrift.models.basemodel:2014:               -21.249014762009967   <- z ->   -0.0985030235322476
14:08:19 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 15:00:00 (before)
                2024-05-25 16:00:00 (after)
14:08:19 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 15:00:00) in space  (linearNDFast)
14:08:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:19 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 16:00:00) in space  (linearNDFast)
14:08:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:19 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 15:00:00, weight 0.36) and
                      after (2024-05-25 16:00:00, weight 0.64) in time
14:08:19 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.4936393563708 and -59.300456931714876 degrees.
14:08:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.4936393563708 and -59.300456931714876 degrees.
14:08:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:19 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:19 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:19 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.173213 (min) 0.0852373 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0648623 (min) 0.171438 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.879505 (min) 0.277521 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -5.97427 (min) -4.30401 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.19599 (min) 23.4897 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.38284 (min) 16.314 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 14.8357 (min) 32.8076 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -7.58367e-05 (min) 4.63637e-05 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:19 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:19 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:19 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:19 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:19 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:19 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:19 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 24
14:08:19 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
14:08:19 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
14:08:19 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[ 0.  0.  0. 73.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 2.  0.  0.  4.  0.]
 [ 0.  0.  1.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
14:08:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:19 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:19 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:19 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.02582420930810137
14:08:19 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:19 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:19 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:19 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:19 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
14:08:19 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:19 INFO    opendrift.models.chemicaldrift:1861: partitioning: [378, 0, 45, 77, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:19 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:19 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:19 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:19 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:19 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:19 INFO    opendrift.models.basemodel:1985: 2024-05-25 16:08:08.401515 - step 5 of 96 - 500 active elements (0 deactivated)
14:08:19 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:19 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:19 DEBUG   opendrift.models.basemodel:2004:               57.5493286840269 <- latitude  -> 57.65847450847594
14:08:19 DEBUG   opendrift.models.basemodel:2009:               10.504740768906393 <- longitude -> 10.699001594440078
14:08:19 DEBUG   opendrift.models.basemodel:2014:               -21.8088436126709   <- z ->   -0.049559759030381456
14:08:19 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 16:00:00 (before)
                2024-05-25 17:00:00 (after)
14:08:21 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:21 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:21 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:21 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:21 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:21 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:21 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 37x35x7) for time after (2024-05-25 17:00:00)
14:08:21 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 16:00:00) in space  (linearNDFast)
14:08:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:21 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 17:00:00) in space  (linearNDFast)
14:08:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:21 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 16:00:00, weight 0.86) and
                      after (2024-05-25 17:00:00, weight 0.14) in time
14:08:21 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49527031577686 and -59.301009472317 degrees.
14:08:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49527031577686 and -59.301009472317 degrees.
14:08:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:21 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:21 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:21 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.189521 (min) 0.102926 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0802659 (min) 0.191195 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.350332 (min) 0.399872 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -6.44487 (min) -4.79187 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 8.98929 (min) 23.5212 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.39159 (min) 16.2864 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 14.9234 (min) 32.7913 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -9.3426e-05 (min) 2.87797e-05 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:21 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:21 DEBUG   opendrift.models.basemodel:704: Lifting 5 elements to seafloor.
14:08:21 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:21 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:21 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:21 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:21 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 30
14:08:21 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
14:08:21 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
14:08:21 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 102.   0.]
 [  0.   0.   0.   0.   0.]
 [  2.   0.   0.   5.   0.]
 [  1.   0.   1.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:21 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:21 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:21 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03013449564911716
14:08:21 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:21 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:21 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:21 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
14:08:21 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:21 INFO    opendrift.models.chemicaldrift:1861: partitioning: [350, 0, 43, 107, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:21 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:21 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:21 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:21 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:21 INFO    opendrift.models.basemodel:1985: 2024-05-25 16:38:08.401515 - step 6 of 96 - 500 active elements (0 deactivated)
14:08:21 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:21 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:21 DEBUG   opendrift.models.basemodel:2004:               57.5493286840269 <- latitude  -> 57.66116034625251
14:08:21 DEBUG   opendrift.models.basemodel:2009:               10.505638047787285 <- longitude -> 10.698245746371493
14:08:21 DEBUG   opendrift.models.basemodel:2014:               -21.8088436126709   <- z ->   -0.07805862868177638
14:08:21 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 16:00:00 (before)
                2024-05-25 17:00:00 (after)
14:08:21 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 16:00:00) in space  (linearNDFast)
14:08:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:21 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 17:00:00) in space  (linearNDFast)
14:08:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:21 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 16:00:00, weight 0.36) and
                      after (2024-05-25 17:00:00, weight 0.64) in time
14:08:21 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.494373026654415 and -59.30176531551517 degrees.
14:08:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.494373026654415 and -59.30176531551517 degrees.
14:08:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:21 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:21 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:21 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.192716 (min) 0.0982103 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0903527 (min) 0.20793 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.654093 (min) -0.114875 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -6.8301 (min) -5.37835 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 8.98026 (min) 23.54 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.40443 (min) 16.3341 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 14.9289 (min) 32.7919 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000102668 (min) 1.14486e-05 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:21 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:21 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:21 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
14:08:21 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:21 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:21 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:21 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:21 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 24
14:08:21 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
14:08:21 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
14:08:21 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 125.   0.]
 [  0.   0.   0.   0.   0.]
 [  3.   0.   0.   7.   0.]
 [  1.   0.   1.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:21 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:21 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:21 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03372391196064072
14:08:21 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:21 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:21 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:21 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:21 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:21 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:21 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
14:08:21 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:21 INFO    opendrift.models.chemicaldrift:1861: partitioning: [328, 0, 40, 132, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:21 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:21 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:21 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:21 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:21 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:21 INFO    opendrift.models.basemodel:1985: 2024-05-25 17:08:08.401515 - step 7 of 96 - 500 active elements (0 deactivated)
14:08:21 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:21 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:21 DEBUG   opendrift.models.basemodel:2004:               57.5493286840269 <- latitude  -> 57.66295052089845
14:08:21 DEBUG   opendrift.models.basemodel:2009:               10.506430239476606 <- longitude -> 10.69765570331002
14:08:21 DEBUG   opendrift.models.basemodel:2014:               -21.8088436126709   <- z ->   -0.016150616075165214
14:08:21 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 17:00:00 (before)
                2024-05-25 18:00:00 (after)
14:08:23 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:23 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:23 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:23 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:23 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:23 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:23 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 38x35x7) for time after (2024-05-25 18:00:00)
14:08:23 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 17:00:00) in space  (linearNDFast)
14:08:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:23 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 18:00:00) in space  (linearNDFast)
14:08:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:23 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 17:00:00, weight 0.86) and
                      after (2024-05-25 18:00:00, weight 0.14) in time
14:08:23 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49358084351891 and -59.30235536107794 degrees.
14:08:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49358084351891 and -59.30235536107794 degrees.
14:08:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:23 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:23 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:23 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.20836 (min) 0.109187 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.105918 (min) 0.228059 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.0492 (min) -0.639862 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -6.97991 (min) -5.94853 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 8.95538 (min) 23.5884 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.52489 (min) 16.2395 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 14.973 (min) 32.7933 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000113887 (min) 2.07828e-05 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:23 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:23 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:23 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:23 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:23 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:23 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:23 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 20
14:08:23 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
14:08:23 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
14:08:23 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 145.   0.]
 [  0.   0.   0.   0.   0.]
 [  3.   0.   0.   9.   0.]
 [  1.   0.   1.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:23 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:23 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:23 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.035505260864585046
14:08:23 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:23 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:23 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:23 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:23 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:23 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
14:08:23 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
14:08:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:23 INFO    opendrift.models.chemicaldrift:1861: partitioning: [308, 0, 39, 153, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:23 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:23 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:23 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:23 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:23 INFO    opendrift.models.basemodel:1985: 2024-05-25 17:38:08.401515 - step 8 of 96 - 500 active elements (0 deactivated)
14:08:23 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:23 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:23 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.66524098385165
14:08:23 DEBUG   opendrift.models.basemodel:2009:               10.507158360650376 <- longitude -> 10.691382431781012
14:08:23 DEBUG   opendrift.models.basemodel:2014:               -21.8088436126709   <- z ->   -0.1898255423771723
14:08:23 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:23 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 17:00:00 (before)
                2024-05-25 18:00:00 (after)
14:08:23 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 17:00:00) in space  (linearNDFast)
14:08:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:23 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 18:00:00) in space  (linearNDFast)
14:08:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:23 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 17:00:00, weight 0.36) and
                      after (2024-05-25 18:00:00, weight 0.64) in time
14:08:23 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49285272080465 and -59.30862863080237 degrees.
14:08:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49285272080465 and -59.30862863080237 degrees.
14:08:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:23 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:23 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:23 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.246807 (min) 0.120114 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0893813 (min) 0.258798 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.58422 (min) -1.11188 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -6.95543 (min) -6.02644 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 8.91585 (min) 23.2576 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.40903 (min) 16.2262 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 14.8935 (min) 32.7835 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000120755 (min) 3.7379e-05 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:23 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:23 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:23 DEBUG   opendrift.models.basemodel:704: Lifting 6 elements to seafloor.
14:08:23 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:23 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:23 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:23 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:23 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 16
14:08:23 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
14:08:23 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
14:08:23 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 161.   0.]
 [  0.   0.   0.   0.   0.]
 [  3.   0.   0.  11.   0.]
 [  1.   0.   2.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:23 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:23 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:23 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.038533246145381714
14:08:23 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:23 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:23 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:23 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:23 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:23 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:23 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:23 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
14:08:23 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
14:08:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:23 INFO    opendrift.models.chemicaldrift:1861: partitioning: [292, 0, 36, 172, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:23 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:23 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:23 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:23 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:23 INFO    opendrift.models.basemodel:1985: 2024-05-25 18:08:08.401515 - step 9 of 96 - 500 active elements (0 deactivated)
14:08:23 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:23 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:23 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.66934292459567
14:08:23 DEBUG   opendrift.models.basemodel:2009:               10.507969860232391 <- longitude -> 10.689033017492427
14:08:23 DEBUG   opendrift.models.basemodel:2014:               -22.09750747680664   <- z ->   -0.07705676191585153
14:08:23 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:23 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 18:00:00 (before)
                2024-05-25 19:00:00 (after)
14:08:25 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:25 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:25 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:25 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:25 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:25 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:25 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 38x35x7) for time after (2024-05-25 19:00:00)
14:08:25 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 18:00:00) in space  (linearNDFast)
14:08:25 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:25 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 19:00:00) in space  (linearNDFast)
14:08:25 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:25 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 18:00:00, weight 0.86) and
                      after (2024-05-25 19:00:00, weight 0.14) in time
14:08:25 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:25 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49204122073331 and -59.31097804581313 degrees.
14:08:25 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49204122073331 and -59.31097804581313 degrees.
14:08:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:25 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:25 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:25 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:25 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:25 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:25 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:25 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:25 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:25 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.268953 (min) 0.151366 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0799826 (min) 0.283776 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -3.93761 (min) -1.76672 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -6.72311 (min) -5.2024 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 8.86168 (min) 23.1314 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.48139 (min) 16.2053 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 14.8887 (min) 32.8487 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000126776 (min) 3.82129e-05 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:25 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:25 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:08:25 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:25 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:25 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:25 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:25 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 19
14:08:25 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
14:08:25 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
14:08:25 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 180.   0.]
 [  0.   0.   0.   0.   0.]
 [  3.   0.   0.  15.   0.]
 [  1.   0.   3.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:25 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:25 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:25 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04332853969997524
14:08:25 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:25 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:25 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:25 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:25 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:25 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:25 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12
14:08:25 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements
14:08:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:25 INFO    opendrift.models.chemicaldrift:1861: partitioning: [273, 0, 47, 180, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:25 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:25 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:25 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:25 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:08:25 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:25 INFO    opendrift.models.basemodel:1985: 2024-05-25 18:38:08.401515 - step 10 of 96 - 500 active elements (0 deactivated)
14:08:25 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:25 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:25 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.67382007894266
14:08:25 DEBUG   opendrift.models.basemodel:2009:               10.50780341777814 <- longitude -> 10.688373550970628
14:08:25 DEBUG   opendrift.models.basemodel:2014:               -22.396894454956055   <- z ->   -0.19791750479881165
14:08:25 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:25 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 18:00:00 (before)
                2024-05-25 19:00:00 (after)
14:08:25 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 18:00:00) in space  (linearNDFast)
14:08:25 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:25 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 19:00:00) in space  (linearNDFast)
14:08:25 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:25 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 18:00:00, weight 0.36) and
                      after (2024-05-25 19:00:00, weight 0.64) in time
14:08:25 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:25 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49220766417571 and -59.311637512156636 degrees.
14:08:25 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49220766417571 and -59.311637512156636 degrees.
14:08:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:25 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:25 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:25 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:25 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:25 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:25 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:25 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:25 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:25 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.239261 (min) 0.146044 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0821528 (min) 0.355785 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -4.85407 (min) -3.05465 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -4.58068 (min) -4.05916 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 8.73151 (min) 23.1603 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.3935 (min) 16.2294 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.0048 (min) 32.8119 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000130521 (min) 4.15134e-05 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:25 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:25 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:25 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:08:25 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:25 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:25 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:25 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:25 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 21
14:08:25 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
14:08:25 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
14:08:25 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 201.   0.]
 [  0.   0.   0.   0.   0.]
 [  3.   0.   0.  16.   0.]
 [  1.   0.  15.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:25 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:25 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:25 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03126094818601977
14:08:25 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:25 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:25 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:25 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:25 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:25 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:25 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:25 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:25 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:25 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:25 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:25 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 25
14:08:25 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 25 elements
14:08:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:25 INFO    opendrift.models.chemicaldrift:1861: partitioning: [252, 0, 68, 180, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:25 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:25 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:25 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:25 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:25 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:25 INFO    opendrift.models.basemodel:1985: 2024-05-25 19:08:08.401515 - step 11 of 96 - 500 active elements (0 deactivated)
14:08:25 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:25 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:25 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.67561213702986
14:08:25 DEBUG   opendrift.models.basemodel:2009:               10.508251626648272 <- longitude -> 10.684056141568336
14:08:25 DEBUG   opendrift.models.basemodel:2014:               -22.396894454956055   <- z ->   -0.09020274273673023
14:08:25 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:25 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 19:00:00 (before)
                2024-05-25 20:00:00 (after)
14:08:27 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:27 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:27 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:27 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:27 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:27 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:27 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 39x35x7) for time after (2024-05-25 20:00:00)
14:08:27 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 19:00:00) in space  (linearNDFast)
14:08:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:27 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 20:00:00) in space  (linearNDFast)
14:08:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:27 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 19:00:00, weight 0.86) and
                      after (2024-05-25 20:00:00, weight 0.14) in time
14:08:27 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.4917594537925 and -59.31595492189973 degrees.
14:08:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.4917594537925 and -59.31595492189973 degrees.
14:08:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:27 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:27 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:27 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.230187 (min) 0.160937 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0719737 (min) 0.369814 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -5.71356 (min) -3.94506 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -3.72434 (min) -2.61951 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 8.60941 (min) 22.8407 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.52194 (min) 16.2378 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.0832 (min) 32.8564 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000133762 (min) 4.11178e-05 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:27 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:27 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:08:27 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:27 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:27 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:27 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:27 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 14
14:08:27 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 3 0 0 0 0 0 0 0 0 0 0]
14:08:27 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 3 3 3 3 3 3 3 3 3 3]
14:08:27 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 214.   0.]
 [  0.   0.   0.   0.   0.]
 [  3.   0.   0.  20.   0.]
 [  2.   0.  40.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:27 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:27 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:27 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03022905895776687
14:08:27 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:27 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:27 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:27 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:27 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:27 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 22
14:08:27 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 22 elements
14:08:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:27 INFO    opendrift.models.chemicaldrift:1861: partitioning: [240, 0, 87, 173, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:27 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:27 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:27 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:27 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:27 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:27 INFO    opendrift.models.basemodel:1985: 2024-05-25 19:38:08.401515 - step 12 of 96 - 500 active elements (0 deactivated)
14:08:27 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:27 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:27 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.68061227734824
14:08:27 DEBUG   opendrift.models.basemodel:2009:               10.507047277574843 <- longitude -> 10.680495995174518
14:08:27 DEBUG   opendrift.models.basemodel:2014:               -22.396894454956055   <- z ->   -0.13745919940064155
14:08:27 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:27 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 19:00:00 (before)
                2024-05-25 20:00:00 (after)
14:08:27 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 19:00:00) in space  (linearNDFast)
14:08:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:27 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 20:00:00) in space  (linearNDFast)
14:08:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:27 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 19:00:00, weight 0.36) and
                      after (2024-05-25 20:00:00, weight 0.64) in time
14:08:27 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49296379980517 and -59.31951506276296 degrees.
14:08:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49296379980517 and -59.31951506276296 degrees.
14:08:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:27 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:27 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:27 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.245535 (min) 0.219857 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.063591 (min) 0.430647 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -5.64346 (min) -4.21152 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -3.53535 (min) -2.50535 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 8.43617 (min) 22.449 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.38282 (min) 16.215 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 14.9718 (min) 32.8464 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000127533 (min) 1.53398e-05 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:27 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:27 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:27 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:08:27 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:27 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:27 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:27 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:27 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 17
14:08:27 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
14:08:27 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
14:08:27 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 230.   0.]
 [  0.   0.   0.   0.   0.]
 [  4.   0.   0.  23.   0.]
 [  2.   0.  62.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:27 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:27 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:27 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.028677687596803714
14:08:27 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:27 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:27 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:27 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:27 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:27 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:27 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:27 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:27 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:27 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 8
14:08:27 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 8 elements
14:08:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:27 INFO    opendrift.models.chemicaldrift:1861: partitioning: [225, 0, 89, 186, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:27 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:27 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:27 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:27 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:08:27 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:27 INFO    opendrift.models.basemodel:1985: 2024-05-25 20:08:08.401515 - step 13 of 96 - 500 active elements (0 deactivated)
14:08:27 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:27 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:27 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.68681092919905
14:08:27 DEBUG   opendrift.models.basemodel:2009:               10.505102024840468 <- longitude -> 10.680495995174518
14:08:27 DEBUG   opendrift.models.basemodel:2014:               -22.396894454956055   <- z ->   -0.018034954047550844
14:08:27 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:27 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 20:00:00 (before)
                2024-05-25 21:00:00 (after)
14:08:29 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:29 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:29 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:29 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:29 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:29 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:29 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 41x36x7) for time after (2024-05-25 21:00:00)
14:08:29 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 20:00:00) in space  (linearNDFast)
14:08:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:29 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 21:00:00) in space  (linearNDFast)
14:08:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:29 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 20:00:00, weight 0.86) and
                      after (2024-05-25 21:00:00, weight 0.14) in time
14:08:29 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.494909066719146 and -59.31951506276296 degrees.
14:08:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.494909066719146 and -59.31951506276296 degrees.
14:08:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:29 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:29 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:29 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.228117 (min) 0.256914 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0553767 (min) 0.434178 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -5.83845 (min) -4.45136 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -3.51556 (min) -2.26659 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 8.2418 (min) 22.3969 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.39386 (min) 16.2261 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.0185 (min) 32.8375 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000122345 (min) 2.3753e-05 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:29 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:29 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:08:29 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:29 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:29 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:29 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:29 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 18
14:08:29 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 2 0 2 0 0 0 0 0 0 2 0 0 0]
14:08:29 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 0 3 0 3 3 3 3 3 3 0 3 3 3]
14:08:29 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 245.   0.]
 [  0.   0.   0.   0.   0.]
 [  7.   0.   0.  28.   0.]
 [  2.   0.  70.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:29 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:29 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:29 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.02920375756352331
14:08:29 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:29 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:29 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:29 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:29 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:29 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:29 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12
14:08:29 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements
14:08:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:29 INFO    opendrift.models.chemicaldrift:1861: partitioning: [213, 0, 93, 194, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:29 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:29 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:29 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:29 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:29 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:29 INFO    opendrift.models.basemodel:1985: 2024-05-25 20:38:08.401515 - step 14 of 96 - 500 active elements (0 deactivated)
14:08:29 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:29 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:29 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.69345187213241
14:08:29 DEBUG   opendrift.models.basemodel:2009:               10.502892108801774 <- longitude -> 10.680495995174518
14:08:29 DEBUG   opendrift.models.basemodel:2014:               -22.396894454956055   <- z ->   -0.10609603463865702
14:08:29 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 20:00:00 (before)
                2024-05-25 21:00:00 (after)
14:08:29 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 20:00:00) in space  (linearNDFast)
14:08:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:29 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 21:00:00) in space  (linearNDFast)
14:08:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:29 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 20:00:00, weight 0.36) and
                      after (2024-05-25 21:00:00, weight 0.64) in time
14:08:29 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49711896911815 and -59.31951506276296 degrees.
14:08:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49711896911815 and -59.31951506276296 degrees.
14:08:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:29 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:29 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:29 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.225137 (min) 0.261703 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0476145 (min) 0.469272 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -6.16687 (min) -4.47461 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -3.75078 (min) -1.64173 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 8.05614 (min) 22.3969 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.45991 (min) 16.2326 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 14.9857 (min) 32.8522 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000104231 (min) 3.52175e-05 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:29 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:29 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:29 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:08:29 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:29 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:29 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:29 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:29 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 16
14:08:29 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2]
14:08:29 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 0]
14:08:29 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 260.   0.]
 [  0.   0.   0.   0.   0.]
 [  8.   0.   0.  33.   0.]
 [  2.   0.  82.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:29 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:29 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:29 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.02961155719834949
14:08:29 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:29 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:29 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:29 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:29 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:29 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:29 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:29 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:29 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:29 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12
14:08:29 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements
14:08:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:29 INFO    opendrift.models.chemicaldrift:1861: partitioning: [199, 0, 100, 201, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:29 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:29 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:29 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:29 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:29 INFO    opendrift.models.basemodel:1985: 2024-05-25 21:08:08.401515 - step 15 of 96 - 500 active elements (0 deactivated)
14:08:29 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:29 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:29 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.70058282397226
14:08:29 DEBUG   opendrift.models.basemodel:2009:               10.501794742594996 <- longitude -> 10.680495995174518
14:08:29 DEBUG   opendrift.models.basemodel:2014:               -22.396894454956055   <- z ->   -0.08314511698686644
14:08:29 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 21:00:00 (before)
                2024-05-25 22:00:00 (after)
14:08:31 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:31 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:31 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:31 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:31 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:31 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:31 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 42x37x7) for time after (2024-05-25 22:00:00)
14:08:31 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 21:00:00) in space  (linearNDFast)
14:08:31 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:31 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 22:00:00) in space  (linearNDFast)
14:08:31 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:31 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 21:00:00, weight 0.86) and
                      after (2024-05-25 22:00:00, weight 0.14) in time
14:08:31 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:31 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49821634262676 and -59.31951506276296 degrees.
14:08:31 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49821634262676 and -59.31951506276296 degrees.
14:08:31 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:31 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:31 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:31 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:31 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:31 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:31 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:31 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:31 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:31 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:31 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:31 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:31 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:31 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:31 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:31 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:31 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:31 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:31 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:31 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.178801 (min) 0.283947 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0393644 (min) 0.490262 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -6.47716 (min) -4.66996 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -3.13022 (min) -0.723124 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 7.91138 (min) 22.3969 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.50469 (min) 16.2436 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.0416 (min) 32.8405 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -8.13316e-05 (min) 4.60228e-05 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:31 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:31 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:31 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:31 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:31 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:31 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:31 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
14:08:31 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 2 0 0]
14:08:31 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 0 3 3]
14:08:31 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 268.   0.]
 [  0.   0.   0.   0.   0.]
 [  9.   0.   0.  37.   0.]
 [  2.   0.  94.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:31 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:31 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:31 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:31 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:31 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.030768654107814337
14:08:31 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:31 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:31 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:31 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:31 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:31 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:31 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:31 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:31 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:31 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:31 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:31 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:31 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:31 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:31 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:31 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 15
14:08:31 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:31 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 15 elements
14:08:31 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:31 INFO    opendrift.models.chemicaldrift:1861: partitioning: [192, 0, 108, 200, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:31 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:31 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:31 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:31 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:31 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:31 INFO    opendrift.models.basemodel:1985: 2024-05-25 21:38:08.401515 - step 16 of 96 - 500 active elements (0 deactivated)
14:08:31 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:31 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:31 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.70798093942194
14:08:31 DEBUG   opendrift.models.basemodel:2009:               10.501633033911075 <- longitude -> 10.683531887931226
14:08:31 DEBUG   opendrift.models.basemodel:2014:               -22.396894454956055   <- z ->   -0.06885746918861946
14:08:31 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:31 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:31 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:31 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:31 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 21:00:00 (before)
                2024-05-25 22:00:00 (after)
14:08:31 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 21:00:00) in space  (linearNDFast)
14:08:31 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:31 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 22:00:00) in space  (linearNDFast)
14:08:31 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:31 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 21:00:00, weight 0.36) and
                      after (2024-05-25 22:00:00, weight 0.64) in time
14:08:31 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:31 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.498378045302005 and -59.31647914563963 degrees.
14:08:31 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.498378045302005 and -59.31647914563963 degrees.
14:08:31 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:31 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:31 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:31 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:31 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:31 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:31 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:31 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:31 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:31 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:31 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:31 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:31 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:31 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:31 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:31 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:31 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:31 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:31 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:31 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.168069 (min) 0.330231 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0298039 (min) 0.500362 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -6.65808 (min) -5.59574 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.36559 (min) 0.931735 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 7.79114 (min) 22.3969 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.49366 (min) 16.2416 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.0401 (min) 32.8366 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000103363 (min) 5.50582e-05 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:31 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:31 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:31 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:31 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:31 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:31 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:31 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:31 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 15
14:08:31 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 2 0 0 0 0 0 0]
14:08:31 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 0 3 3 3 3 3 3]
14:08:31 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 282.   0.]
 [  0.   0.   0.   0.   0.]
 [ 10.   0.   0.  43.   0.]
 [  2.   0. 109.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:31 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:31 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:31 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:31 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:31 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03258557943368374
14:08:31 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:31 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:31 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:31 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:31 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:31 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:31 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:31 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:31 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:31 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:31 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:31 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:31 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:31 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:31 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:31 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 20
14:08:31 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:31 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 20 elements
14:08:31 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:31 INFO    opendrift.models.chemicaldrift:1861: partitioning: [179, 0, 120, 201, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:31 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:31 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:31 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:31 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:31 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:31 INFO    opendrift.models.basemodel:1985: 2024-05-25 22:08:08.401515 - step 17 of 96 - 500 active elements (0 deactivated)
14:08:31 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:31 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:31 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.715556264945754
14:08:31 DEBUG   opendrift.models.basemodel:2009:               10.502427370967933 <- longitude -> 10.686806033458085
14:08:31 DEBUG   opendrift.models.basemodel:2014:               -22.396894454956055   <- z ->   -0.2733861916234178
14:08:31 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:31 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:31 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:31 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:31 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:31 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 22:00:00 (before)
                2024-05-25 23:00:00 (after)
14:08:33 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:33 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:33 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:33 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:33 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:33 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:33 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 44x37x7) for time after (2024-05-25 23:00:00)
14:08:33 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 22:00:00) in space  (linearNDFast)
14:08:33 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:33 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 23:00:00) in space  (linearNDFast)
14:08:33 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:33 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 22:00:00, weight 0.86) and
                      after (2024-05-25 23:00:00, weight 0.14) in time
14:08:33 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:33 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49758371482415 and -59.3132050077496 degrees.
14:08:33 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49758371482415 and -59.3132050077496 degrees.
14:08:33 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:33 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:33 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:33 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:33 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:33 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:33 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:33 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:33 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:33 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:33 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:33 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:33 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:33 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:33 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:33 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:33 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:33 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:33 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:33 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:33 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:33 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.108424 (min) 0.4035 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0192877 (min) 0.518291 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -6.97637 (min) -6.17758 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.88146 (min) 2.80758 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 7.68573 (min) 22.3969 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.47308 (min) 16.2433 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.1257 (min) 32.8498 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000133766 (min) 6.3957e-05 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:33 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:33 DEBUG   opendrift.models.basemodel:704: Lifting 5 elements to seafloor.
14:08:33 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:33 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:33 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:33 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:33 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 14
14:08:33 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0]
14:08:33 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3]
14:08:33 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 296.   0.]
 [  0.   0.   0.   0.   0.]
 [ 10.   0.   0.  50.   0.]
 [  2.   0. 129.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:33 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:33 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:33 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:33 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:33 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04083806659920165
14:08:33 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:33 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:33 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:33 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:33 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:33 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:33 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:33 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:33 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:33 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:33 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:33 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:33 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:33 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:33 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:33 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:33 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 17
14:08:33 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:33 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 17 elements
14:08:33 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:33 INFO    opendrift.models.chemicaldrift:1861: partitioning: [165, 0, 131, 204, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:33 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:33 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:33 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:33 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:08:33 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:33 INFO    opendrift.models.basemodel:1985: 2024-05-25 22:38:08.401515 - step 18 of 96 - 500 active elements (0 deactivated)
14:08:33 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:33 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:33 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.723131720904334
14:08:33 DEBUG   opendrift.models.basemodel:2009:               10.504235813404353 <- longitude -> 10.690746545950798
14:08:33 DEBUG   opendrift.models.basemodel:2014:               -22.396894454956055   <- z ->   -0.13136953439389515
14:08:33 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:33 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:33 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:33 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:33 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 22:00:00 (before)
                2024-05-25 23:00:00 (after)
14:08:33 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 22:00:00) in space  (linearNDFast)
14:08:33 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:33 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
/root/project/opendrift/readers/interpolation/interpolators.py:17: RuntimeWarning: overflow encountered in cast
  data[mask] = np.finfo(np.float64).min
14:08:33 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:33 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:33 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:33 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:33 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:33 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:33 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-25 23:00:00) in space  (linearNDFast)
14:08:33 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:33 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:33 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:33 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:33 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:33 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:33 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:33 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:33 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 22:00:00, weight 0.36) and
                      after (2024-05-25 23:00:00, weight 0.64) in time
14:08:33 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:33 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49577526327599 and -59.30926448423705 degrees.
14:08:33 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49577526327599 and -59.30926448423705 degrees.
14:08:33 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:33 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:33 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:33 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:33 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:33 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:33 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:33 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:33 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:33 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:33 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:33 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:33 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:33 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:33 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:33 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:33 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:33 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:33 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:33 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:33 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:33 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0762037 (min) 0.334147 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.00620483 (min) 0.542836 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -6.3788 (min) -5.18106 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.83733 (min) 3.26869 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 7.55027 (min) 22.3969 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.48485 (min) 16.2375 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.1202 (min) 32.9381 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000116861 (min) 7.58979e-05 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:33 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:33 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:33 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:33 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:33 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:33 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:33 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:33 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 10
14:08:33 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 2 0 0 0 2]
14:08:33 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 0 3 3 3 0]
14:08:33 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 304.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  56.   0.]
 [  2.   0. 146.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:33 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:33 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:33 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:33 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:33 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03712741790180083
14:08:33 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:33 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:33 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:33 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:33 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:33 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:33 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:33 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:33 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:33 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:33 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:33 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 19
14:08:33 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:33 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 19 elements
14:08:33 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:33 INFO    opendrift.models.chemicaldrift:1861: partitioning: [159, 0, 145, 196, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:33 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:33 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:33 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:33 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:33 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:33 INFO    opendrift.models.basemodel:1985: 2024-05-25 23:08:08.401515 - step 19 of 96 - 500 active elements (0 deactivated)
14:08:33 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:33 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:33 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.72586864248237
14:08:33 DEBUG   opendrift.models.basemodel:2009:               10.507368282982114 <- longitude -> 10.696316438579915
14:08:33 DEBUG   opendrift.models.basemodel:2014:               -22.396894454956055   <- z ->   -0.13740104278975618
14:08:33 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:33 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:33 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:33 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:33 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:33 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 23:00:00 (before)
                2024-05-26 00:00:00 (after)
14:08:35 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:35 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:35 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:35 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:35 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:35 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:35 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 46x38x7) for time after (2024-05-26 00:00:00)
14:08:35 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 23:00:00) in space  (linearNDFast)
14:08:35 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:35 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 00:00:00) in space  (linearNDFast)
14:08:35 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:35 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 23:00:00, weight 0.86) and
                      after (2024-05-26 00:00:00, weight 0.14) in time
14:08:35 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:35 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49264279008799 and -59.30369458063289 degrees.
14:08:35 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.49264279008799 and -59.30369458063289 degrees.
14:08:35 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:35 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:35 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:35 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:35 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:35 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:35 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:35 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:35 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:35 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:35 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:35 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:35 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:35 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:35 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:35 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:35 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:35 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:35 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:35 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:35 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:35 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0888979 (min) 0.460661 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.00810687 (min) 0.72289 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -5.76193 (min) -4.20602 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.79374 (min) 4.11119 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 7.49953 (min) 22.3969 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.47485 (min) 16.2315 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.204 (min) 32.9607 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00014069 (min) 9.10896e-05 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:35 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:35 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:35 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:35 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:35 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:35 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 16
14:08:35 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
14:08:35 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
14:08:35 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 320.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  59.   0.]
 [  2.   0. 165.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:35 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:35 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:35 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:35 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:35 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.036163235790713656
14:08:35 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:35 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:35 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:35 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:35 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 40
14:08:35 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:35 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 40 elements
14:08:35 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:35 INFO    opendrift.models.chemicaldrift:1861: partitioning: [143, 0, 172, 185, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:35 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:35 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:35 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:35 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:35 INFO    opendrift.models.basemodel:1985: 2024-05-25 23:38:08.401515 - step 20 of 96 - 500 active elements (0 deactivated)
14:08:35 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:35 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:35 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.73755116045923
14:08:35 DEBUG   opendrift.models.basemodel:2009:               10.511733649961592 <- longitude -> 10.704169261506953
14:08:35 DEBUG   opendrift.models.basemodel:2014:               -22.396894454956055   <- z ->   -0.33974690451913797
14:08:35 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:35 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:35 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:35 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:35 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-25 23:00:00 (before)
                2024-05-26 00:00:00 (after)
14:08:35 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-25 23:00:00) in space  (linearNDFast)
14:08:35 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:35 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 00:00:00) in space  (linearNDFast)
14:08:35 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:35 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:35 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-25 23:00:00, weight 0.36) and
                      after (2024-05-26 00:00:00, weight 0.64) in time
14:08:35 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:35 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.488277418988304 and -59.295841763115035 degrees.
14:08:35 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.488277418988304 and -59.295841763115035 degrees.
14:08:35 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:35 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:35 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:35 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:35 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:35 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:35 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:35 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:35 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:35 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:35 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:35 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:35 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:35 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:35 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:35 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:35 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:35 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:35 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:35 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:35 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:35 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.10133 (min) 0.493811 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0257187 (min) 0.685157 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -4.94364 (min) -3.28867 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.78468 (min) 5.62178 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 7.60048 (min) 22.3969 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.28698 (min) 16.2071 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.1736 (min) 33.2375 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -9.48079e-05 (min) 0.000392973 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:35 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:35 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:35 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:35 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:35 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:35 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:35 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:35 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
14:08:35 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0]
14:08:35 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3]
14:08:35 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 329.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  72.   0.]
 [  2.   0. 205.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:35 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:35 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:35 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:35 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:35 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03513224682916621
14:08:35 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:35 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:35 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:35 DEBUG   opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:35 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:35 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:35 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 46
14:08:35 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:35 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 46 elements
14:08:35 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:35 INFO    opendrift.models.chemicaldrift:1861: partitioning: [134, 0, 211, 155, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:35 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:35 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:35 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:35 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:35 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:35 INFO    opendrift.models.basemodel:1985: 2024-05-26 00:08:08.401515 - step 21 of 96 - 500 active elements (0 deactivated)
14:08:35 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:35 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:35 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.73978832630778
14:08:35 DEBUG   opendrift.models.basemodel:2009:               10.51714640817546 <- longitude -> 10.711704172471713
14:08:35 DEBUG   opendrift.models.basemodel:2014:               -22.396894454956055   <- z ->   -0.011390956488522175
14:08:35 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:35 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:35 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:35 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:35 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:35 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 00:00:00 (before)
                2024-05-26 01:00:00 (after)
14:08:38 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:38 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:38 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:38 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:38 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:38 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:38 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 49x38x7) for time after (2024-05-26 01:00:00)
14:08:38 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 00:00:00) in space  (linearNDFast)
14:08:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:38 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 01:00:00) in space  (linearNDFast)
14:08:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:38 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:38 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:38 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:38 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:38 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:38 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:38 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:38 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 00:00:00, weight 0.86) and
                      after (2024-05-26 01:00:00, weight 0.14) in time
14:08:38 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.482864653754326 and -59.288306851468086 degrees.
14:08:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.482864653754326 and -59.288306851468086 degrees.
14:08:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:38 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:38 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:38 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.122306 (min) 0.414044 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0414217 (min) 0.622954 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -4.09102 (min) -2.58663 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 5.44171 (min) 6.73346 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 7.83976 (min) 22.66 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.37573 (min) 16.1792 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.2251 (min) 33.1283 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000112759 (min) 0.000492429 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:38 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:38 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:38 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:38 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:38 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
14:08:38 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 2 0 0]
14:08:38 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 0 3 3]
14:08:38 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 335.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  79.   0.]
 [  2.   0. 251.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:38 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:38 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:38 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03780202481400556
14:08:38 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:38 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:38 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:38 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 32 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 32 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 70
14:08:38 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 70 elements
14:08:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:38 INFO    opendrift.models.chemicaldrift:1861: partitioning: [129, 0, 263, 108, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:38 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:38 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:38 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
14:08:38 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:38 INFO    opendrift.models.basemodel:1985: 2024-05-26 00:38:08.401515 - step 22 of 96 - 500 active elements (0 deactivated)
14:08:38 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:38 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:38 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.74178016330675
14:08:38 DEBUG   opendrift.models.basemodel:2009:               10.523578175445895 <- longitude -> 10.718305242872615
14:08:38 DEBUG   opendrift.models.basemodel:2014:               -22.396894454956055   <- z ->   -0.12658261224591993
14:08:38 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:38 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 00:00:00 (before)
                2024-05-26 01:00:00 (after)
14:08:38 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 00:00:00) in space  (linearNDFast)
14:08:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:38 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 01:00:00) in space  (linearNDFast)
14:08:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:38 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 00:00:00, weight 0.36) and
                      after (2024-05-26 01:00:00, weight 0.64) in time
14:08:38 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47643288401802 and -59.28170577282905 degrees.
14:08:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47643288401802 and -59.28170577282905 degrees.
14:08:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:38 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:38 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:38 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.13773 (min) 0.416891 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0519986 (min) 0.553304 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.81598 (min) -2.41066 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 5.63585 (min) 6.373 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 8.24515 (min) 24.7066 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.07203 (min) 16.2167 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.151 (min) 33.4606 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000197966 (min) 0.000338295 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:38 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:38 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:38 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:38 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:38 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:38 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:38 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 12
14:08:38 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 0 2 0 2 0 2 2 2 2]
14:08:38 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 3 0 3 0 3 0 0 0 0]
14:08:38 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 339.   0.]
 [  0.   0.   0.   0.   0.]
 [ 21.   0.   0.  96.   0.]
 [  2.   0. 321.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:38 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:38 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:38 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03460905065498874
14:08:38 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:38 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:38 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:38 DEBUG   opendrift.models.oceandrift:618: 39 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 36 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 42 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 37 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 35 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 37 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 30 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 35 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:38 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
14:08:38 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:38 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 52
14:08:38 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 52 elements
14:08:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:38 INFO    opendrift.models.chemicaldrift:1861: partitioning: [133, 0, 297, 70, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:38 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:38 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:38 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:38 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:38 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:38 INFO    opendrift.models.basemodel:1985: 2024-05-26 01:08:08.401515 - step 23 of 96 - 500 active elements (0 deactivated)
14:08:38 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:38 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:38 DEBUG   opendrift.models.basemodel:2004:               57.549328684026904 <- latitude  -> 57.743434074114745
14:08:38 DEBUG   opendrift.models.basemodel:2009:               10.52878012220634 <- longitude -> 10.723695823742812
14:08:38 DEBUG   opendrift.models.basemodel:2014:               -22.396894454956055   <- z ->   0.0
14:08:38 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:38 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 01:00:00 (before)
                2024-05-26 02:00:00 (after)
14:08:40 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:40 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:40 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:40 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:40 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:40 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:40 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 50x38x7) for time after (2024-05-26 02:00:00)
14:08:40 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 01:00:00) in space  (linearNDFast)
14:08:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:40 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 02:00:00) in space  (linearNDFast)
14:08:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:40 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 01:00:00, weight 0.86) and
                      after (2024-05-26 02:00:00, weight 0.14) in time
14:08:40 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.27631519113939 degrees.
14:08:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.27631519113939 degrees.
14:08:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:40 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:40 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:40 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.148948 (min) 0.435743 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0235463 (min) 1.02498 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.38118 (min) -1.66789 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 5.42089 (min) 6.12644 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 8.61994 (min) 26.8427 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 8.05409 (min) 16.1814 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.2629 (min) 33.4757 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000262526 (min) 0.000334345 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:40 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:40 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:40 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:40 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:40 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:40 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:40 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
14:08:40 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 0 2 2 0 0]
14:08:40 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 0 0 3 3]
14:08:40 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 344.   0.]
 [  0.   0.   0.   0.   0.]
 [ 24.   0.   0. 106.   0.]
 [  2.   0. 373.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:40 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:40 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:40 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03060116919602258
14:08:40 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:40 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:40 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:40 DEBUG   opendrift.models.oceandrift:618: 37 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 32 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:40 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 34
14:08:40 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 34 elements
14:08:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:40 INFO    opendrift.models.chemicaldrift:1861: partitioning: [131, 0, 316, 53, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:40 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:40 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:40 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:40 INFO    opendrift.models.basemodel:1985: 2024-05-26 01:38:08.401515 - step 24 of 96 - 500 active elements (0 deactivated)
14:08:40 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:40 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:40 DEBUG   opendrift.models.basemodel:2004:               57.550539509621956 <- latitude  -> 57.75999950583043
14:08:40 DEBUG   opendrift.models.basemodel:2009:               10.52878012220634 <- longitude -> 10.724987620574872
14:08:40 DEBUG   opendrift.models.basemodel:2014:               -26.842666625976562   <- z ->   0.0
14:08:40 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:40 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 01:00:00 (before)
                2024-05-26 02:00:00 (after)
14:08:40 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 01:00:00) in space  (linearNDFast)
14:08:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:40 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 02:00:00) in space  (linearNDFast)
14:08:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:40 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 01:00:00, weight 0.36) and
                      after (2024-05-26 02:00:00, weight 0.64) in time
14:08:40 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.27502340292027 degrees.
14:08:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.27502340292027 degrees.
14:08:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:40 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:40 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:40 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.126473 (min) 0.406444 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0347372 (min) 0.715864 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.15768 (min) -1.43384 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.55445 (min) 5.10859 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 8.94079 (min) 32.6619 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.4335 (min) 16.2129 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.3121 (min) 33.8867 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -2.57736e-05 (min) 0.000312677 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:40 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:40 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:40 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:40 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:40 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:40 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 12
14:08:40 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 0 0 0 2 2 0 0 2 0]
14:08:40 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 3 3 3 0 0 3 3 0 3]
14:08:40 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 351.   0.]
 [  0.   0.   0.   0.   0.]
 [ 29.   0.   0. 118.   0.]
 [  2.   0. 407.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:40 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:40 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:40 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.021914972366849663
14:08:40 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:40 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:40 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:40 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:618: 30 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:40 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:40 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:40 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:40 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 23
14:08:40 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 23 elements
14:08:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:40 INFO    opendrift.models.chemicaldrift:1861: partitioning: [129, 0, 312, 59, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:40 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:40 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:40 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:40 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:40 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:40 INFO    opendrift.models.basemodel:1985: 2024-05-26 02:08:08.401515 - step 25 of 96 - 500 active elements (0 deactivated)
14:08:40 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:40 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:40 DEBUG   opendrift.models.basemodel:2004:               57.551652110382136 <- latitude  -> 57.771569176725826
14:08:40 DEBUG   opendrift.models.basemodel:2009:               10.528780122206344 <- longitude -> 10.724987620574872
14:08:40 DEBUG   opendrift.models.basemodel:2014:               -27.80038070678711   <- z ->   0.0
14:08:40 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:40 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 02:00:00 (before)
                2024-05-26 03:00:00 (after)
14:08:44 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:44 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:44 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:44 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:44 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:44 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:44 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 53x38x7) for time after (2024-05-26 03:00:00)
14:08:44 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 02:00:00) in space  (linearNDFast)
14:08:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:44 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 03:00:00) in space  (linearNDFast)
14:08:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:44 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 02:00:00, weight 0.86) and
                      after (2024-05-26 03:00:00, weight 0.14) in time
14:08:44 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.275023388153016 degrees.
14:08:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.275023388153016 degrees.
14:08:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:44 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:44 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:44 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.141177 (min) 0.45463 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.104864 (min) 1.00288 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.14375 (min) -1.51851 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.77686 (min) 4.34056 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.2065 (min) 43.8 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.41844 (min) 16.1777 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.2696 (min) 33.9035 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -3.40947e-06 (min) 0.000378655 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:44 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:44 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:44 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:44 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:44 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:44 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:44 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 10
14:08:44 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 2 2 0 0 0 0 2]
14:08:44 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 0 0 3 3 3 3 0]
14:08:44 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 357.   0.]
 [  0.   0.   0.   0.   0.]
 [ 33.   0.   0. 140.   0.]
 [  2.   0. 430.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:44 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:44 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:44 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01669729485680155
14:08:44 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:44 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:44 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:44 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up
14:08:44 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 20
14:08:44 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 20 elements
14:08:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:44 INFO    opendrift.models.chemicaldrift:1861: partitioning: [127, 0, 307, 66, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:44 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:44 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:44 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:44 INFO    opendrift.models.basemodel:1985: 2024-05-26 02:38:08.401515 - step 26 of 96 - 500 active elements (0 deactivated)
14:08:44 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:44 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:44 DEBUG   opendrift.models.basemodel:2004:               57.55318080883359 <- latitude  -> 57.787777521167705
14:08:44 DEBUG   opendrift.models.basemodel:2009:               10.528780122206344 <- longitude -> 10.729266208115702
14:08:44 DEBUG   opendrift.models.basemodel:2014:               -27.80038070678711   <- z ->   0.0
14:08:44 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:44 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 02:00:00 (before)
                2024-05-26 03:00:00 (after)
14:08:44 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 02:00:00) in space  (linearNDFast)
14:08:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:44 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 03:00:00) in space  (linearNDFast)
14:08:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:44 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 02:00:00, weight 0.36) and
                      after (2024-05-26 03:00:00, weight 0.64) in time
14:08:44 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.27074481090153 degrees.
14:08:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.27074481090153 degrees.
14:08:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:44 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:44 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:44 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.161294 (min) 0.507322 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.12065 (min) 0.715155 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.64465 (min) -2.25999 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.48698 (min) 4.09067 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.44044 (min) 61.6466 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.38781 (min) 16.2221 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.2308 (min) 33.9507 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -7.03127e-06 (min) 0.000517691 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:44 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:44 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
14:08:44 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:44 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:44 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:44 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:44 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 18
14:08:44 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 2 0 0 2 0 0 0 0 0 0 2 0 2]
14:08:44 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 0 3 3 0 3 3 3 3 3 3 0 3 0]
14:08:44 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 371.   0.]
 [  0.   0.   0.   0.   0.]
 [ 37.   0.   0. 161.   0.]
 [  2.   0. 450.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:44 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:44 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:44 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01701068652311543
14:08:44 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:44 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:44 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:44 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:44 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:44 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:44 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:44 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
14:08:44 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
14:08:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:44 INFO    opendrift.models.chemicaldrift:1861: partitioning: [117, 0, 299, 84, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:44 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:44 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:44 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:44 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:44 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:44 INFO    opendrift.models.basemodel:1985: 2024-05-26 03:08:08.401515 - step 27 of 96 - 500 active elements (0 deactivated)
14:08:44 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:44 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:44 DEBUG   opendrift.models.basemodel:2004:               57.553842136968946 <- latitude  -> 57.7943886155849
14:08:44 DEBUG   opendrift.models.basemodel:2009:               10.528780122206344 <- longitude -> 10.737253378429266
14:08:44 DEBUG   opendrift.models.basemodel:2014:               -27.80038070678711   <- z ->   -0.12769342834112596
14:08:44 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:44 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 03:00:00 (before)
                2024-05-26 04:00:00 (after)
14:08:46 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:46 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:46 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:46 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:46 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:46 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:46 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 55x38x7) for time after (2024-05-26 04:00:00)
14:08:46 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 03:00:00) in space  (linearNDFast)
14:08:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:46 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 04:00:00) in space  (linearNDFast)
14:08:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:46 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 03:00:00, weight 0.86) and
                      after (2024-05-26 04:00:00, weight 0.14) in time
14:08:46 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.26275763871658 degrees.
14:08:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.26275763871658 degrees.
14:08:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:46 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:46 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:46 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.253808 (min) 0.499634 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.230037 (min) 0.833688 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -3.44688 (min) -2.8043 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.00846 (min) 3.66286 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.65222 (min) 68.8571 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.35915 (min) 16.2169 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.2666 (min) 34.0013 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -4.28433e-05 (min) 0.000627125 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:46 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:46 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:46 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:46 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:46 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:46 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:46 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
14:08:46 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 0 2 2 0 0]
14:08:46 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 3 0 0 3 3]
14:08:46 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 375.   0.]
 [  0.   0.   0.   0.   0.]
 [ 41.   0.   0. 169.   0.]
 [  2.   0. 454.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:46 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:46 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:46 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.017444639788349564
14:08:46 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:46 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:46 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:46 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:46 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7
14:08:46 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 7 elements
14:08:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:46 INFO    opendrift.models.chemicaldrift:1861: partitioning: [117, 0, 288, 95, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:46 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:46 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:46 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:46 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:46 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:46 INFO    opendrift.models.basemodel:1985: 2024-05-26 03:38:08.401515 - step 28 of 96 - 500 active elements (0 deactivated)
14:08:46 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:46 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:46 DEBUG   opendrift.models.basemodel:2004:               57.55508698036597 <- latitude  -> 57.800708953387876
14:08:46 DEBUG   opendrift.models.basemodel:2009:               10.528780122206342 <- longitude -> 10.74393780908396
14:08:46 DEBUG   opendrift.models.basemodel:2014:               -27.80038070678711   <- z ->   0.0
14:08:46 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:46 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 03:00:00 (before)
                2024-05-26 04:00:00 (after)
14:08:46 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 03:00:00) in space  (linearNDFast)
14:08:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:46 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 04:00:00) in space  (linearNDFast)
14:08:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:46 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 03:00:00, weight 0.36) and
                      after (2024-05-26 04:00:00, weight 0.64) in time
14:08:46 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.25607319235988 degrees.
14:08:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.25607319235988 degrees.
14:08:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:46 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:46 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:46 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.178439 (min) 0.53021 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.227968 (min) 0.729093 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -4.31816 (min) -3.41547 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.21386 (min) 3.03587 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.7878 (min) 75.7395 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.33576 (min) 16.2219 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.3053 (min) 34.0611 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -1.53132e-05 (min) 0.000657063 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:46 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:46 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:46 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:46 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:46 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:46 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:46 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:46 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
14:08:46 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 2 2 0 0 0]
14:08:46 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 0 0 3 3 3]
14:08:46 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 382.   0.]
 [  0.   0.   0.   0.   0.]
 [ 43.   0.   0. 183.   0.]
 [  2.   0. 461.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:46 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:46 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:46 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01913671577446037
14:08:46 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:46 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:46 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:46 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:46 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
14:08:46 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
14:08:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:46 INFO    opendrift.models.chemicaldrift:1861: partitioning: [112, 0, 280, 108, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:46 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:46 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:46 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:46 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:46 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:46 INFO    opendrift.models.basemodel:1985: 2024-05-26 04:08:08.401515 - step 29 of 96 - 500 active elements (0 deactivated)
14:08:46 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:46 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:46 DEBUG   opendrift.models.basemodel:2004:               57.55597630550972 <- latitude  -> 57.80270294049354
14:08:46 DEBUG   opendrift.models.basemodel:2009:               10.528780122206342 <- longitude -> 10.741017819577383
14:08:46 DEBUG   opendrift.models.basemodel:2014:               -27.80038070678711   <- z ->   -0.11879666355954899
14:08:46 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:46 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 04:00:00 (before)
                2024-05-26 05:00:00 (after)
14:08:48 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:48 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:48 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:48 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:48 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:48 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:48 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 56x38x7) for time after (2024-05-26 05:00:00)
14:08:48 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 04:00:00) in space  (linearNDFast)
14:08:48 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:48 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 05:00:00) in space  (linearNDFast)
14:08:48 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:48 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:48 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:48 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:48 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:48 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:48 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:48 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:48 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:48 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:48 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:48 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:48 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:48 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:48 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:48 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 04:00:00, weight 0.86) and
                      after (2024-05-26 05:00:00, weight 0.14) in time
14:08:48 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:48 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.25899319445704 degrees.
14:08:48 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.25899319445704 degrees.
14:08:48 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:48 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:48 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:48 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:48 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:48 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:48 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:48 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:48 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:48 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:48 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:48 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:48 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:48 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:48 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:48 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:48 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:48 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:48 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:48 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:48 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:48 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.372862 (min) 0.517216 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.219381 (min) 0.653592 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -5.06427 (min) -3.88938 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.70213 (min) 2.66719 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.85695 (min) 78.0712 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.3154 (min) 16.2302 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.5807 (min) 34.1141 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -4.75773e-05 (min) 0.000655682 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:48 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:48 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:48 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:48 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:48 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:48 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:48 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
14:08:48 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 2 2 2 0]
14:08:48 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 0 0 3]
14:08:48 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 386.   0.]
 [  0.   0.   0.   0.   0.]
 [ 46.   0.   0. 194.   0.]
 [  2.   0. 466.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:48 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:48 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:48 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:48 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:48 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.021082984712700314
14:08:48 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:48 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:48 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:48 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:48 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
14:08:48 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:48 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
14:08:48 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:48 INFO    opendrift.models.chemicaldrift:1861: partitioning: [111, 0, 270, 119, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:48 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:48 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:48 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:48 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:48 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:48 INFO    opendrift.models.basemodel:1985: 2024-05-26 04:38:08.401515 - step 30 of 96 - 500 active elements (0 deactivated)
14:08:48 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:48 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:48 DEBUG   opendrift.models.basemodel:2004:               57.55597630550972 <- latitude  -> 57.808107775175344
14:08:48 DEBUG   opendrift.models.basemodel:2009:               10.528780122206344 <- longitude -> 10.737205278998946
14:08:48 DEBUG   opendrift.models.basemodel:2014:               -27.80038070678711   <- z ->   -0.03359153136088355
14:08:48 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:48 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:48 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:48 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:48 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 04:00:00 (before)
                2024-05-26 05:00:00 (after)
14:08:48 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 04:00:00) in space  (linearNDFast)
14:08:48 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:48 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 05:00:00) in space  (linearNDFast)
14:08:48 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:48 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 04:00:00, weight 0.36) and
                      after (2024-05-26 05:00:00, weight 0.64) in time
14:08:48 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:48 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.26280573459671 degrees.
14:08:48 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.26280573459671 degrees.
14:08:48 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:48 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:48 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:48 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:48 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:48 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:48 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:48 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:48 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:48 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:48 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:48 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:48 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:48 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:48 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:48 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:48 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:48 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:48 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:48 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:48 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:48 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.320391 (min) 0.512635 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.19602 (min) 0.767254 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -4.97554 (min) -3.99468 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.96267 (min) 2.57038 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.85695 (min) 83.893 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.30314 (min) 16.2477 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.3207 (min) 34.1486 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000103283 (min) 0.000570191 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:48 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:48 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:48 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:48 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:48 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:48 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:48 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
14:08:48 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 0 0]
14:08:48 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 3 3]
14:08:48 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 392.   0.]
 [  0.   0.   0.   0.   0.]
 [ 47.   0.   0. 204.   0.]
 [  2.   0. 469.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:48 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:48 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:48 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:48 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:48 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.020886825423725323
14:08:48 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:48 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:48 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:48 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:48 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:48 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:48 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:48 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2
14:08:48 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:48 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
14:08:48 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:48 INFO    opendrift.models.chemicaldrift:1861: partitioning: [106, 0, 258, 136, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:48 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:48 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:48 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:48 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:48 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:48 INFO    opendrift.models.basemodel:1985: 2024-05-26 05:08:08.401515 - step 31 of 96 - 500 active elements (0 deactivated)
14:08:48 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:48 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:48 DEBUG   opendrift.models.basemodel:2004:               57.55597630550972 <- latitude  -> 57.8097075196059
14:08:48 DEBUG   opendrift.models.basemodel:2009:               10.52878012220634 <- longitude -> 10.73483607874933
14:08:48 DEBUG   opendrift.models.basemodel:2014:               -27.80038070678711   <- z ->   0.0
14:08:48 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:48 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:48 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:48 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:48 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:48 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 05:00:00 (before)
                2024-05-26 06:00:00 (after)
14:08:51 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:51 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:51 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:51 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:51 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:51 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:51 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 57x40x7) for time after (2024-05-26 06:00:00)
14:08:51 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 05:00:00) in space  (linearNDFast)
14:08:51 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:51 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 06:00:00) in space  (linearNDFast)
14:08:51 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:51 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:51 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:51 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:51 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:51 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:51 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:51 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:51 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:51 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:51 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:51 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:51 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:51 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:51 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:51 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 05:00:00, weight 0.86) and
                      after (2024-05-26 06:00:00, weight 0.14) in time
14:08:51 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:51 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.265174950516545 degrees.
14:08:51 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.265174950516545 degrees.
14:08:51 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:51 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:51 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:51 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:51 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:51 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:51 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:51 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:51 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:51 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:51 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:51 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:51 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:51 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:51 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:51 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:51 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:51 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:51 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:51 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:51 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:51 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.362084 (min) 0.45645 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.141679 (min) 0.725665 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -4.84029 (min) -3.98451 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.99401 (min) 2.36288 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.85695 (min) 86.1783 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.29188 (min) 16.2673 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.5328 (min) 34.1736 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000143719 (min) 0.000472425 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:51 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
14:08:51 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:51 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:51 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:51 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:51 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
14:08:51 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 0 0 2 2 0]
14:08:51 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 3 3 0 0 3]
14:08:51 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 397.   0.]
 [  0.   0.   0.   0.   0.]
 [ 51.   0.   0. 217.   0.]
 [  2.   0. 471.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:51 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:51 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:51 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:51 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:51 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.02001624810203087
14:08:51 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:51 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:51 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:51 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:51 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:51 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:51 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:51 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:51 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:51 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
14:08:51 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:51 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
14:08:51 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:51 INFO    opendrift.models.chemicaldrift:1861: partitioning: [105, 0, 250, 145, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:51 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:51 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:51 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:51 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:51 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:51 INFO    opendrift.models.basemodel:1985: 2024-05-26 05:38:08.401515 - step 32 of 96 - 500 active elements (0 deactivated)
14:08:51 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:51 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:51 DEBUG   opendrift.models.basemodel:2004:               57.55597630550972 <- latitude  -> 57.814242246645534
14:08:51 DEBUG   opendrift.models.basemodel:2009:               10.528780122206335 <- longitude -> 10.735552373639935
14:08:51 DEBUG   opendrift.models.basemodel:2014:               -27.80038070678711   <- z ->   0.0
14:08:51 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:51 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:51 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:51 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:51 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 05:00:00 (before)
                2024-05-26 06:00:00 (after)
14:08:51 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 05:00:00) in space  (linearNDFast)
14:08:51 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:51 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 06:00:00) in space  (linearNDFast)
14:08:51 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:51 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 05:00:00, weight 0.36) and
                      after (2024-05-26 06:00:00, weight 0.64) in time
14:08:51 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:51 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.26445863887789 degrees.
14:08:51 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.26445863887789 degrees.
14:08:51 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:51 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:51 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:51 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:51 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:51 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:51 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:51 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:51 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:51 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:51 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:51 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:51 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:51 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:51 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:51 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:51 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:51 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:51 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:51 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:51 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:51 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.603023 (min) 0.506255 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.067106 (min) 0.701091 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -4.55434 (min) -3.6643 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.437 (min) 1.8528 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.85695 (min) 88.36 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.28333 (min) 16.2928 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.4573 (min) 34.173 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000186302 (min) 0.000341694 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:51 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:51 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:51 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:51 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:51 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:51 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:51 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
14:08:51 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 2 0 2 2 0 2]
14:08:51 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 0 3 0 0 3 0]
14:08:51 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 401.   0.]
 [  0.   0.   0.   0.   0.]
 [ 56.   0.   0. 225.   0.]
 [  2.   0. 475.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:51 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:51 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:51 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:51 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:51 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01648950977072432
14:08:51 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:51 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:51 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:51 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:51 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:51 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:51 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:51 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:51 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:51 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:51 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
14:08:51 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:51 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
14:08:51 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:51 INFO    opendrift.models.chemicaldrift:1861: partitioning: [106, 0, 238, 156, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:51 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:51 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:51 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:51 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:51 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:51 INFO    opendrift.models.basemodel:1985: 2024-05-26 06:08:08.401515 - step 33 of 96 - 500 active elements (0 deactivated)
14:08:51 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:51 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:51 DEBUG   opendrift.models.basemodel:2004:               57.55597630550972 <- latitude  -> 57.82054958851522
14:08:51 DEBUG   opendrift.models.basemodel:2009:               10.52878012220633 <- longitude -> 10.736034507274514
14:08:51 DEBUG   opendrift.models.basemodel:2014:               -30.09616596661047   <- z ->   -0.14008210724304876
14:08:51 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:51 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:51 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:51 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:51 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:51 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 06:00:00 (before)
                2024-05-26 07:00:00 (after)
14:08:53 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:53 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:53 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:53 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:53 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:53 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:53 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 57x42x7) for time after (2024-05-26 07:00:00)
14:08:53 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 06:00:00) in space  (linearNDFast)
14:08:53 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:53 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 07:00:00) in space  (linearNDFast)
14:08:53 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:53 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:53 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:53 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:53 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:53 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:53 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:53 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:53 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:53 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:53 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:53 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:53 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:53 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:53 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:08:53 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 06:00:00, weight 0.86) and
                      after (2024-05-26 07:00:00, weight 0.14) in time
14:08:53 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:53 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.26397650551492 degrees.
14:08:53 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.26397650551492 degrees.
14:08:53 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:53 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:53 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:53 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:53 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:53 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:53 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:53 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:53 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:53 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:53 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:53 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:53 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:53 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:53 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:53 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:53 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:53 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:53 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:53 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:53 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:53 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.744242 (min) 0.451464 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0306418 (min) 0.693047 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -4.43842 (min) -3.56483 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.7442 (min) 1.22972 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.85695 (min) 93.366 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.27729 (min) 16.3177 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.3869 (min) 34.2935 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000257489 (min) 0.000364504 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:53 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:53 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:53 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:53 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:53 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:53 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:53 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
14:08:53 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 2 2 0 2 0 2]
14:08:53 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 0 3 0 3 0]
14:08:53 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 406.   0.]
 [  0.   0.   0.   0.   0.]
 [ 60.   0.   0. 238.   0.]
 [  2.   0. 481.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:53 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:53 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:53 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:53 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:53 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.014730266827471056
14:08:53 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:53 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:53 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:53 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:53 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
14:08:53 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:53 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
14:08:53 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:53 INFO    opendrift.models.chemicaldrift:1861: partitioning: [105, 0, 230, 165, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:53 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:53 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:53 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:53 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:08:53 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:53 INFO    opendrift.models.basemodel:1985: 2024-05-26 06:38:08.401515 - step 34 of 96 - 500 active elements (0 deactivated)
14:08:53 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:53 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:53 DEBUG   opendrift.models.basemodel:2004:               57.55597630550972 <- latitude  -> 57.82652295275666
14:08:53 DEBUG   opendrift.models.basemodel:2009:               10.52878012220633 <- longitude -> 10.72924590592983
14:08:53 DEBUG   opendrift.models.basemodel:2014:               -27.80038070678711   <- z ->   0.0
14:08:53 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:53 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:53 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:53 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:53 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 06:00:00 (before)
                2024-05-26 07:00:00 (after)
14:08:53 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 06:00:00) in space  (linearNDFast)
14:08:53 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:53 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 07:00:00) in space  (linearNDFast)
14:08:53 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:53 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 06:00:00, weight 0.36) and
                      after (2024-05-26 07:00:00, weight 0.64) in time
14:08:53 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:53 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.270765120666276 degrees.
14:08:53 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.270765120666276 degrees.
14:08:53 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:53 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:53 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:53 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:53 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:53 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:53 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:53 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:53 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:53 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:53 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:53 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:53 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:53 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:53 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:53 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:53 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:53 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:53 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:53 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:53 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:53 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.828875 (min) 0.398309 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0281261 (min) 0.774481 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -4.79791 (min) -4.0582 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.142445 (min) 0.213113 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.85695 (min) 98.3518 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.27798 (min) 16.3406 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.5019 (min) 34.1606 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000237931 (min) 0.000323459 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:53 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:53 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:53 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:53 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:53 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:53 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 11
14:08:53 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 0 0 0 0 2 0 0 0]
14:08:53 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 3 3 3 0 3 3 3]
14:08:53 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 415.   0.]
 [  0.   0.   0.   0.   0.]
 [ 62.   0.   0. 246.   0.]
 [  2.   0. 485.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:53 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:53 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:53 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:53 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:53 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.016639326507114267
14:08:53 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:53 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:53 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:53 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:53 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:53 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12
14:08:53 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:53 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements
14:08:53 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:53 INFO    opendrift.models.chemicaldrift:1861: partitioning: [98, 0, 225, 177, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:53 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:53 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:53 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:53 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:53 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:53 INFO    opendrift.models.basemodel:1985: 2024-05-26 07:08:08.401515 - step 35 of 96 - 500 active elements (0 deactivated)
14:08:53 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:53 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:53 DEBUG   opendrift.models.basemodel:2004:               57.55597630550972 <- latitude  -> 57.83023877023144
14:08:53 DEBUG   opendrift.models.basemodel:2009:               10.52878012220633 <- longitude -> 10.73225801625411
14:08:53 DEBUG   opendrift.models.basemodel:2014:               -27.15098839434898   <- z ->   0.0
14:08:53 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:53 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:53 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:53 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:53 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:53 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 07:00:00 (before)
                2024-05-26 08:00:00 (after)
14:08:56 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:56 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:56 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:56 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:56 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:56 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:56 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 57x46x7) for time after (2024-05-26 08:00:00)
14:08:56 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 07:00:00) in space  (linearNDFast)
14:08:56 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 08:00:00) in space  (linearNDFast)
14:08:56 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:56 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 07:00:00, weight 0.86) and
                      after (2024-05-26 08:00:00, weight 0.14) in time
14:08:56 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:56 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.2677529996523 degrees.
14:08:56 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.2677529996523 degrees.
14:08:56 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:56 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:56 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:56 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:56 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:56 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:56 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:56 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:56 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:56 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:56 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:56 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:56 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:56 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:56 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:56 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:56 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:56 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:56 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:56 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:56 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:56 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.851685 (min) 0.432484 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0274941 (min) 0.803105 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -5.0239 (min) -4.37836 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.796553 (min) -0.171876 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.0696 (min) 100.949 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.28633 (min) 16.2832 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.5386 (min) 34.2343 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000320862 (min) 0.000514597 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:56 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
14:08:56 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:56 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:56 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:56 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:56 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
14:08:56 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 2 2 2]
14:08:56 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 0 0 0]
14:08:56 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 417.   0.]
 [  0.   0.   0.   0.   0.]
 [ 66.   0.   0. 261.   0.]
 [  2.   0. 497.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:56 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:56 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:56 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:56 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:56 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01836832048906416
14:08:56 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:56 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:56 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:56 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:56 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:56 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:56 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:56 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:56 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:56 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 15
14:08:56 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:56 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 15 elements
14:08:56 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:56 INFO    opendrift.models.chemicaldrift:1861: partitioning: [100, 0, 231, 169, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:56 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:56 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:56 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:56 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:56 INFO    opendrift.models.basemodel:1985: 2024-05-26 07:38:08.401515 - step 36 of 96 - 500 active elements (0 deactivated)
14:08:56 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:56 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:56 DEBUG   opendrift.models.basemodel:2004:               57.55597630550973 <- latitude  -> 57.833941797086425
14:08:56 DEBUG   opendrift.models.basemodel:2009:               10.528780122206335 <- longitude -> 10.735174632679154
14:08:56 DEBUG   opendrift.models.basemodel:2014:               -30.105835668483795   <- z ->   -0.11071960523389579
14:08:56 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:56 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:56 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:56 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:56 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 07:00:00 (before)
                2024-05-26 08:00:00 (after)
14:08:56 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 07:00:00) in space  (linearNDFast)
14:08:56 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:56 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 08:00:00) in space  (linearNDFast)
14:08:56 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:56 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 07:00:00, weight 0.36) and
                      after (2024-05-26 08:00:00, weight 0.64) in time
14:08:56 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:56 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.26483638482865 degrees.
14:08:56 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47123096542144 and -59.26483638482865 degrees.
14:08:56 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:56 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:56 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:56 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:56 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:56 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:56 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:56 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:56 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:56 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:56 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:56 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:56 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:56 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:56 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:56 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:56 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:56 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:56 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:56 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:56 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:56 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.748177 (min) 0.411041 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0319208 (min) 0.723094 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -4.81881 (min) -4.12246 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -1.12452 (min) 0.405822 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.2666 (min) 102.505 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.38712 (min) 16.3135 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.6806 (min) 34.2235 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00041486 (min) 0.000648645 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:56 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:56 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:56 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:56 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:56 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:56 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:56 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
14:08:56 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0]
14:08:56 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3]
14:08:56 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 424.   0.]
 [  0.   0.   0.   0.   0.]
 [ 66.   0.   0. 266.   0.]
 [  2.   0. 512.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:56 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:56 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:56 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:56 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:56 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01690281868474213
14:08:56 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:56 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:56 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:56 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:56 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:56 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:56 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:56 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:56 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:56 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:56 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:56 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:08:56 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 26
14:08:56 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:56 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 26 elements
14:08:56 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:56 INFO    opendrift.models.chemicaldrift:1861: partitioning: [93, 0, 249, 158, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:56 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:56 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:56 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:56 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:56 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:56 INFO    opendrift.models.basemodel:1985: 2024-05-26 08:08:08.401515 - step 37 of 96 - 500 active elements (0 deactivated)
14:08:56 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:56 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:56 DEBUG   opendrift.models.basemodel:2004:               57.55597630550973 <- latitude  -> 57.839814697101744
14:08:56 DEBUG   opendrift.models.basemodel:2009:               10.528780122206335 <- longitude -> 10.73659198500941
14:08:56 DEBUG   opendrift.models.basemodel:2014:               -30.793104180287287   <- z ->   -0.06862646808684253
14:08:56 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:56 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:56 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:56 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:56 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:56 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 08:00:00 (before)
                2024-05-26 09:00:00 (after)
14:08:58 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:08:58 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:08:58 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:08:58 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:08:58 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:08:58 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:08:58 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 57x49x7) for time after (2024-05-26 09:00:00)
14:08:58 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 08:00:00) in space  (linearNDFast)
14:08:58 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:58 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 09:00:00) in space  (linearNDFast)
14:08:58 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:08:58 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 08:00:00, weight 0.86) and
                      after (2024-05-26 09:00:00, weight 0.14) in time
14:08:58 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:58 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.471230956591 and -59.263419036513504 degrees.
14:08:58 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.471230956591 and -59.263419036513504 degrees.
14:08:58 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:58 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:58 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:58 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:58 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:58 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:58 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:58 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:58 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:58 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:58 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:58 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:58 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:58 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:58 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:58 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:58 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:58 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:58 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:58 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:58 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:58 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.799905 (min) 0.530868 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0372579 (min) 0.825029 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -4.59977 (min) -3.84975 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -1.46897 (min) 0.555142 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.2666 (min) 103.204 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.28161 (min) 16.3653 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.7067 (min) 34.2768 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000529709 (min) 0.0005302 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:58 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:08:58 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:58 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:58 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:58 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:58 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
14:08:58 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2]
14:08:58 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0]
14:08:58 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 425.   0.]
 [  0.   0.   0.   0.   0.]
 [ 68.   0.   0. 274.   0.]
 [  2.   0. 538.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:58 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:58 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:58 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:58 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:58 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01551571598863476
14:08:58 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:58 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:58 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:58 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:58 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 34
14:08:58 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:58 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 34 elements
14:08:58 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:58 INFO    opendrift.models.chemicaldrift:1861: partitioning: [94, 0, 266, 140, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:58 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:58 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:58 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 5 elements to seafloor.
14:08:58 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:58 INFO    opendrift.models.basemodel:1985: 2024-05-26 08:38:08.401515 - step 38 of 96 - 500 active elements (0 deactivated)
14:08:58 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:58 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:58 DEBUG   opendrift.models.basemodel:2004:               57.55597630550973 <- latitude  -> 57.845459139472645
14:08:58 DEBUG   opendrift.models.basemodel:2009:               10.516828787366682 <- longitude -> 10.73606997419348
14:08:58 DEBUG   opendrift.models.basemodel:2014:               -33.9873732472022   <- z ->   0.0
14:08:58 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:58 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:58 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:58 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:58 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 08:00:00 (before)
                2024-05-26 09:00:00 (after)
14:08:58 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 08:00:00) in space  (linearNDFast)
14:08:58 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:58 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 09:00:00) in space  (linearNDFast)
14:08:58 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:08:58 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 08:00:00, weight 0.36) and
                      after (2024-05-26 09:00:00, weight 0.64) in time
14:08:58 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:08:58 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.4831822180986 and -59.26394103723042 degrees.
14:08:58 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.4831822180986 and -59.26394103723042 degrees.
14:08:58 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:58 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:08:58 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:08:58 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:58 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:08:58 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:58 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:58 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:58 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:08:58 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:08:58 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:58 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:08:58 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:08:58 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:08:58 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:08:58 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:08:58 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:08:58 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:08:58 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:08:58 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:08:58 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:08:58 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.727877 (min) 0.521006 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0450398 (min) 0.807029 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -4.20479 (min) -3.5598 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -1.39657 (min) -0.203583 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.2666 (min) 102.294 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.40789 (min) 16.3552 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.6262 (min) 34.1986 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000477916 (min) 0.000549499 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:08:58 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:08:58 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:58 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:08:58 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:08:58 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:08:58 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:08:58 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
14:08:58 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 0 3 0 2]
14:08:58 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3 0 3 0]
14:08:58 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 430.   0.]
 [  0.   0.   0.   0.   0.]
 [ 70.   0.   0. 289.   0.]
 [  3.   0. 572.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:08:58 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:08:58 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:58 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:08:58 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:08:58 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.013298627407876061
14:08:58 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:08:58 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:08:58 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:08:58 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:08:58 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:08:58 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:08:58 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 27
14:08:58 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:08:58 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 27 elements
14:08:58 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:08:58 INFO    opendrift.models.chemicaldrift:1861: partitioning: [92, 0, 274, 134, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:08:58 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:08:58 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:08:58 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:08:58 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
14:08:58 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:08:58 INFO    opendrift.models.basemodel:1985: 2024-05-26 09:08:08.401515 - step 39 of 96 - 500 active elements (0 deactivated)
14:08:58 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:08:58 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:08:58 DEBUG   opendrift.models.basemodel:2004:               57.55597630550973 <- latitude  -> 57.85048494376343
14:08:58 DEBUG   opendrift.models.basemodel:2009:               10.499264309929021 <- longitude -> 10.733249553405042
14:08:58 DEBUG   opendrift.models.basemodel:2014:               -35.166796072228934   <- z ->   -0.21926096094410713
14:08:58 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:08:58 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:08:58 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:08:58 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:08:58 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:08:58 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 09:00:00 (before)
                2024-05-26 10:00:00 (after)
14:09:00 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:09:00 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:09:00 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:09:00 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:09:00 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:09:00 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:09:00 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 56x51x7) for time after (2024-05-26 10:00:00)
14:09:00 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 09:00:00) in space  (linearNDFast)
14:09:00 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:00 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 10:00:00) in space  (linearNDFast)
14:09:00 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:00 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 09:00:00, weight 0.86) and
                      after (2024-05-26 10:00:00, weight 0.14) in time
14:09:00 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:00 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.50074669734455 and -59.26676145982612 degrees.
14:09:00 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.50074669734455 and -59.26676145982612 degrees.
14:09:00 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:00 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:00 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:00 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:00 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:00 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:00 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:00 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:00 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:00 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:00 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:00 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:00 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:00 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:00 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:00 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:00 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:00 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:00 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:00 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.808519 (min) 0.437996 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0515349 (min) 0.739547 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -3.82112 (min) -3.05004 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -1.92246 (min) -0.427867 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.2666 (min) 101.053 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.25485 (min) 16.4403 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.657 (min) 34.2898 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000550242 (min) 0.00085092 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:00 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:00 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:00 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:00 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:00 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
14:09:00 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 2]
14:09:00 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 0]
14:09:00 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 434.   0.]
 [  0.   0.   0.   0.   0.]
 [ 72.   0.   0. 306.   0.]
 [  3.   0. 599.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:00 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:00 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:00 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:00 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:00 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01322554252106685
14:09:00 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:00 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:00 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:00 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 39
14:09:00 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:00 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 39 elements
14:09:00 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:00 INFO    opendrift.models.chemicaldrift:1861: partitioning: [90, 0, 287, 123, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:00 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:00 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:00 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
14:09:00 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:00 INFO    opendrift.models.basemodel:1985: 2024-05-26 09:38:08.401515 - step 40 of 96 - 500 active elements (0 deactivated)
14:09:00 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:00 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:00 DEBUG   opendrift.models.basemodel:2004:               57.55597630550973 <- latitude  -> 57.8546640168247
14:09:00 DEBUG   opendrift.models.basemodel:2009:               10.487034443561463 <- longitude -> 10.728617701570997
14:09:00 DEBUG   opendrift.models.basemodel:2014:               -36.85509912024937   <- z ->   -0.24491917228740215
14:09:00 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:00 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:00 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:00 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:00 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 09:00:00 (before)
                2024-05-26 10:00:00 (after)
14:09:00 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 09:00:00) in space  (linearNDFast)
14:09:00 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:00 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 10:00:00) in space  (linearNDFast)
14:09:00 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:00 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 09:00:00, weight 0.36) and
                      after (2024-05-26 10:00:00, weight 0.64) in time
14:09:00 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:00 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.51297656256586 and -59.27139331616177 degrees.
14:09:00 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.51297656256586 and -59.27139331616177 degrees.
14:09:00 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:00 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:00 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:00 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:00 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:00 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:00 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:00 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:00 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:00 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:00 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:00 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:00 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:00 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:00 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:00 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:00 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:00 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:00 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:00 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.794392 (min) 0.404189 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0545742 (min) 0.780656 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -3.4678 (min) -2.08025 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -2.11967 (min) -0.542799 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.2666 (min) 99.9738 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.36391 (min) 16.4278 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.6988 (min) 34.2867 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000454757 (min) 0.000743421 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:00 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:00 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:09:00 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:00 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:00 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:00 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:00 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
14:09:00 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 0 2 2 2]
14:09:00 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 3 0 0 0]
14:09:00 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 435.   0.]
 [  0.   0.   0.   0.   0.]
 [ 78.   0.   0. 330.   0.]
 [  3.   0. 638.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:00 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:00 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:00 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:00 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:00 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.011940650987533491
14:09:00 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:00 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:00 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:00 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:00 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 31
14:09:00 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:00 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 31 elements
14:09:00 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:00 INFO    opendrift.models.chemicaldrift:1861: partitioning: [95, 0, 291, 114, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:00 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:00 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:00 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:00 DEBUG   opendrift.models.basemodel:704: Lifting 8 elements to seafloor.
14:09:00 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:00 INFO    opendrift.models.basemodel:1985: 2024-05-26 10:08:08.401515 - step 41 of 96 - 500 active elements (0 deactivated)
14:09:00 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:00 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:00 DEBUG   opendrift.models.basemodel:2004:               57.55597630550973 <- latitude  -> 57.855134217139536
14:09:00 DEBUG   opendrift.models.basemodel:2009:               10.473387877414625 <- longitude -> 10.72735285796868
14:09:00 DEBUG   opendrift.models.basemodel:2014:               -36.653447302106045   <- z ->   0.0
14:09:00 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:00 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:00 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:00 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:00 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:00 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 10:00:00 (before)
                2024-05-26 11:00:00 (after)
14:09:03 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:09:03 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:09:03 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:09:03 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:09:03 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:09:03 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:09:03 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 56x53x7) for time after (2024-05-26 11:00:00)
14:09:03 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 10:00:00) in space  (linearNDFast)
14:09:03 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:03 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 11:00:00) in space  (linearNDFast)
14:09:03 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:03 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1
14:09:03 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1
14:09:03 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1
14:09:03 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1
14:09:03 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1
14:09:03 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1
14:09:03 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1
14:09:03 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 10:00:00, weight 0.86) and
                      after (2024-05-26 11:00:00, weight 0.14) in time
14:09:03 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:03 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.526623155994905 and -59.27265816469344 degrees.
14:09:03 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.526623155994905 and -59.27265816469344 degrees.
14:09:03 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:03 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:03 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:03 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:03 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:03 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:03 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:03 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:03 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:03 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:03 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:03 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:03 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:03 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:03 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:03 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:03 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:03 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:03 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:03 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:03 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:03 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.837028 (min) 0.438477 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.05537 (min) 0.796056 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -3.09775 (min) -1.24664 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -2.3068 (min) -0.925928 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.0705 (min) 98.8354 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.36819 (min) 16.5878 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.7041 (min) 34.2863 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000400831 (min) 0.000925399 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:03 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:03 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:03 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:03 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:03 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:03 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
14:09:03 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2]
14:09:03 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0]
14:09:03 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 436.   0.]
 [  0.   0.   0.   0.   0.]
 [ 81.   0.   0. 351.   0.]
 [  3.   0. 669.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:03 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:03 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:03 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:03 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:03 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01078349670813153
14:09:03 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:03 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:03 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:03 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:03 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 28
14:09:03 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:03 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 28 elements
14:09:03 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:03 INFO    opendrift.models.chemicaldrift:1861: partitioning: [97, 0, 292, 111, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:03 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:03 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:03 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:09:03 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:03 INFO    opendrift.models.basemodel:1985: 2024-05-26 10:38:08.401515 - step 42 of 96 - 500 active elements (0 deactivated)
14:09:03 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:03 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:03 DEBUG   opendrift.models.basemodel:2004:               57.55597630550973 <- latitude  -> 57.85659793574019
14:09:03 DEBUG   opendrift.models.basemodel:2009:               10.461221623770165 <- longitude -> 10.72897276089764
14:09:03 DEBUG   opendrift.models.basemodel:2014:               -36.82297060907145   <- z ->   -0.2561626859257223
14:09:03 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:03 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:03 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:03 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:03 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 10:00:00 (before)
                2024-05-26 11:00:00 (after)
14:09:03 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 10:00:00) in space  (linearNDFast)
14:09:03 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:03 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 11:00:00) in space  (linearNDFast)
14:09:03 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:03 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:03 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:03 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:03 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:03 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:03 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:03 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:03 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 10:00:00, weight 0.36) and
                      after (2024-05-26 11:00:00, weight 0.64) in time
14:09:03 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:03 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.53878939495691 and -59.271038263176976 degrees.
14:09:03 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.53878939495691 and -59.271038263176976 degrees.
14:09:03 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:03 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:03 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:03 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:03 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:03 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:03 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:03 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:03 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:03 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:03 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:03 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:03 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:03 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:03 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:03 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:03 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:03 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:03 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:03 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:03 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:03 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.885916 (min) 0.417928 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0683117 (min) 0.85502 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.68273 (min) -1.34017 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -3.00328 (min) -2.00336 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.90831 (min) 97.9335 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.23509 (min) 16.7176 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.6377 (min) 34.2788 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000320739 (min) 0.000899142 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:03 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:03 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:03 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:03 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:03 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:03 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:03 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:03 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
14:09:03 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 0 2 0]
14:09:03 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 3 0 3]
14:09:03 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 440.   0.]
 [  0.   0.   0.   0.   0.]
 [ 84.   0.   0. 375.   0.]
 [  3.   0. 697.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:03 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:03 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:03 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:03 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:03 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.009601893126761064
14:09:03 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:03 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:03 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:03 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:03 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 23
14:09:03 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:03 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 23 elements
14:09:03 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:03 INFO    opendrift.models.chemicaldrift:1861: partitioning: [96, 0, 300, 104, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:03 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:03 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:03 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:03 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
14:09:03 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:03 INFO    opendrift.models.basemodel:1985: 2024-05-26 11:08:08.401515 - step 43 of 96 - 500 active elements (0 deactivated)
14:09:03 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:03 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:03 DEBUG   opendrift.models.basemodel:2004:               57.55597630550972 <- latitude  -> 57.85725433033738
14:09:03 DEBUG   opendrift.models.basemodel:2009:               10.449428817381392 <- longitude -> 10.729561152794123
14:09:03 DEBUG   opendrift.models.basemodel:2014:               -36.92745359507119   <- z ->   -0.2211467198583609
14:09:03 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:03 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:03 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:03 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:03 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:03 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 11:00:00 (before)
                2024-05-26 12:00:00 (after)
14:09:05 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:09:05 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:09:05 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:09:05 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:09:05 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:09:05 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:09:05 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 57x54x7) for time after (2024-05-26 12:00:00)
14:09:05 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 11:00:00) in space  (linearNDFast)
14:09:05 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:05 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 12:00:00) in space  (linearNDFast)
14:09:05 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:05 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 11:00:00, weight 0.86) and
                      after (2024-05-26 12:00:00, weight 0.14) in time
14:09:05 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:05 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.550582205449466 and -59.270449867425 degrees.
14:09:05 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.550582205449466 and -59.270449867425 degrees.
14:09:05 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:05 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:05 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:05 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:05 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:05 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:05 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:05 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:05 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:05 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:05 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:05 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.879563 (min) 0.369598 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.094831 (min) 0.850593 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.47431 (min) -1.51388 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -3.68713 (min) -2.3636 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.81477 (min) 98.2214 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.93909 (min) 16.8047 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.624 (min) 34.2567 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000271327 (min) 0.00108197 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:05 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:05 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:05 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:05 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:05 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:05 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:05 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
14:09:05 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 0]
14:09:05 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 3]
14:09:05 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 441.   0.]
 [  0.   0.   0.   0.   0.]
 [ 88.   0.   0. 387.   0.]
 [  3.   0. 720.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:05 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:05 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:05 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01259900543786146
14:09:05 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:05 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:05 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:05 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:05 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 26
14:09:05 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 26 elements
14:09:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:05 INFO    opendrift.models.chemicaldrift:1861: partitioning: [99, 0, 305, 96, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:05 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:05 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:05 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:05 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:05 INFO    opendrift.models.basemodel:1985: 2024-05-26 11:38:08.401515 - step 44 of 96 - 500 active elements (0 deactivated)
14:09:05 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:05 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:05 DEBUG   opendrift.models.basemodel:2004:               57.55597630550972 <- latitude  -> 57.85766825093301
14:09:05 DEBUG   opendrift.models.basemodel:2009:               10.43826598868371 <- longitude -> 10.729849618558426
14:09:05 DEBUG   opendrift.models.basemodel:2014:               -35.77131867732438   <- z ->   -0.06728408470410266
14:09:05 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:05 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 11:00:00 (before)
                2024-05-26 12:00:00 (after)
14:09:05 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 11:00:00) in space  (linearNDFast)
14:09:05 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 12:00:00) in space  (linearNDFast)
14:09:05 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:05 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 11:00:00, weight 0.36) and
                      after (2024-05-26 12:00:00, weight 0.64) in time
14:09:05 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:05 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.56174502030381 and -59.27016140119554 degrees.
14:09:05 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.56174502030381 and -59.27016140119554 degrees.
14:09:05 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:05 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:05 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:05 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:05 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:05 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:05 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:05 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:05 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:05 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:05 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:05 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.893683 (min) 0.386376 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0767343 (min) 0.903559 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -3.3849 (min) -2.07091 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -3.71453 (min) -2.04432 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.76559 (min) 99.2962 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.94406 (min) 16.8467 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.5822 (min) 34.2873 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000248377 (min) 0.00098803 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:05 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:05 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:05 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:05 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:05 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:05 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:05 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:05 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
14:09:05 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 2 2 2]
14:09:05 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 0 0 0]
14:09:05 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 442.   0.]
 [  0.   0.   0.   0.   0.]
 [ 93.   0.   0. 404.   0.]
 [  3.   0. 746.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:05 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:05 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:05 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.015155070911657373
14:09:05 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:05 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:05 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:05 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:05 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 24
14:09:05 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 24 elements
14:09:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:05 INFO    opendrift.models.chemicaldrift:1861: partitioning: [103, 0, 311, 86, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:05 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:05 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:05 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:05 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:05 INFO    opendrift.models.basemodel:1985: 2024-05-26 12:08:08.401515 - step 45 of 96 - 500 active elements (0 deactivated)
14:09:05 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:05 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:05 DEBUG   opendrift.models.basemodel:2004:               57.55597630550972 <- latitude  -> 57.85815982627616
14:09:05 DEBUG   opendrift.models.basemodel:2009:               10.427541342531388 <- longitude -> 10.730015696536235
14:09:05 DEBUG   opendrift.models.basemodel:2014:               -34.81605745193924   <- z ->   -0.09372892875413397
14:09:05 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:05 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 12:00:00 (before)
                2024-05-26 13:00:00 (after)
14:09:07 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:09:07 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:09:07 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:09:07 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:09:07 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:09:07 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:09:07 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 56x56x7) for time after (2024-05-26 13:00:00)
14:09:07 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 12:00:00) in space  (linearNDFast)
14:09:07 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:07 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 13:00:00) in space  (linearNDFast)
14:09:07 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:07 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 12:00:00, weight 0.86) and
                      after (2024-05-26 13:00:00, weight 0.14) in time
14:09:07 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:07 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.57246969035422 and -59.2699953306114 degrees.
14:09:07 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.57246969035422 and -59.2699953306114 degrees.
14:09:07 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:07 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:07 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:07 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:07 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:07 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:07 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:07 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:07 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:07 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:07 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:07 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:07 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:07 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:07 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:07 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:07 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:07 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:07 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:07 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:07 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:07 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.866529 (min) 0.323983 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0969574 (min) 0.929076 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -4.21882 (min) -2.03273 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -4.2463 (min) -1.1037 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.80891 (min) 99.4991 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 7.00435 (min) 16.8006 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.568 (min) 34.3218 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00021466 (min) 0.00101041 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:07 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:07 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:07 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:07 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:07 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
14:09:07 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2]
14:09:07 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0]
14:09:07 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 443.   0.]
 [  0.   0.   0.   0.   0.]
 [ 95.   0.   0. 417.   0.]
 [  3.   0. 770.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:07 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:07 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:07 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:07 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:07 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.019245520949344647
14:09:07 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:07 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:07 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:07 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 30
14:09:07 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:07 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 30 elements
14:09:07 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:07 INFO    opendrift.models.chemicaldrift:1861: partitioning: [104, 0, 321, 75, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:07 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:07 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:07 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:09:07 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:07 INFO    opendrift.models.basemodel:1985: 2024-05-26 12:38:08.401515 - step 46 of 96 - 500 active elements (0 deactivated)
14:09:07 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:07 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:07 DEBUG   opendrift.models.basemodel:2004:               57.55597630550972 <- latitude  -> 57.858808293669554
14:09:07 DEBUG   opendrift.models.basemodel:2009:               10.417329702265867 <- longitude -> 10.728058456333766
14:09:07 DEBUG   opendrift.models.basemodel:2014:               -33.10870928724486   <- z ->   -0.08877729993666761
14:09:07 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:07 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:07 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:07 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:07 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 12:00:00 (before)
                2024-05-26 13:00:00 (after)
14:09:07 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 12:00:00) in space  (linearNDFast)
14:09:07 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:07 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 13:00:00) in space  (linearNDFast)
14:09:07 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:07 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 12:00:00, weight 0.36) and
                      after (2024-05-26 13:00:00, weight 0.64) in time
14:09:07 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:07 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.58268132267818 and -59.27195256226119 degrees.
14:09:07 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.58268132267818 and -59.27195256226119 degrees.
14:09:07 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:07 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:07 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:07 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:07 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:07 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:07 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:07 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:07 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:07 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:07 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:07 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:07 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:07 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:07 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:07 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:07 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:07 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:07 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:07 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:07 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:07 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.785538 (min) 0.286166 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.102336 (min) 0.904201 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -3.40507 (min) -1.39006 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -3.7542 (min) -1.07937 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.87949 (min) 100.337 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.96867 (min) 16.7746 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.5504 (min) 34.3671 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000163422 (min) 0.00101251 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:07 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:07 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:07 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:07 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:07 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:07 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
14:09:07 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 2 2 2 2 3]
14:09:07 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 0 0 0 0 0]
14:09:07 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 443.   0.]
 [  0.   0.   0.   0.   0.]
 [103.   0.   0. 435.   0.]
 [  4.   0. 800.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:07 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:07 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:07 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:07 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:07 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.016122077388879316
14:09:07 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:07 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:07 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:07 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 23
14:09:07 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:07 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 23 elements
14:09:07 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:07 INFO    opendrift.models.chemicaldrift:1861: partitioning: [113, 0, 320, 67, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:07 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:07 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:07 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:07 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:07 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:07 INFO    opendrift.models.basemodel:1985: 2024-05-26 13:08:08.401515 - step 47 of 96 - 500 active elements (0 deactivated)
14:09:07 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:07 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:07 DEBUG   opendrift.models.basemodel:2004:               57.55597630550972 <- latitude  -> 57.86245966580889
14:09:07 DEBUG   opendrift.models.basemodel:2009:               10.408827294200828 <- longitude -> 10.727655550577662
14:09:07 DEBUG   opendrift.models.basemodel:2014:               -33.904496825694785   <- z ->   0.0
14:09:07 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:07 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:07 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:07 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:07 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:07 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 13:00:00 (before)
                2024-05-26 14:00:00 (after)
14:09:12 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:09:12 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:09:12 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:09:12 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:09:12 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:09:12 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:09:12 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 56x57x7) for time after (2024-05-26 14:00:00)
14:09:12 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 13:00:00) in space  (linearNDFast)
14:09:12 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:12 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 14:00:00) in space  (linearNDFast)
14:09:12 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:12 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 13:00:00, weight 0.86) and
                      after (2024-05-26 14:00:00, weight 0.14) in time
14:09:12 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:12 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.591183730855505 and -59.2723554675204 degrees.
14:09:12 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.591183730855505 and -59.2723554675204 degrees.
14:09:12 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:12 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:12 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:12 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:12 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:12 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:12 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:12 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:12 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:12 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:12 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:12 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:12 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:12 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:12 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:12 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:12 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:12 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:12 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:12 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:12 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:12 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.778999 (min) 0.24924 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0997631 (min) 0.85399 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -3.31854 (min) -0.691004 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -3.40719 (min) -0.672462 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.98646 (min) 99.9037 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.9221 (min) 16.865 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.5813 (min) 34.3904 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00014601 (min) 0.00100868 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:12 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:12 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:12 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:12 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:12 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:12 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:12 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
14:09:12 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 2 2 2]
14:09:12 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 0 0 0]
14:09:12 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 445.   0.]
 [  0.   0.   0.   0.   0.]
 [107.   0.   0. 451.   0.]
 [  4.   0. 823.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:12 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:12 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:12 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:12 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:12 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01626324626921037
14:09:12 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:12 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:12 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:12 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:12 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 16
14:09:12 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:12 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 16 elements
14:09:12 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:12 INFO    opendrift.models.chemicaldrift:1861: partitioning: [115, 0, 324, 61, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:12 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:12 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:12 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:12 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:12 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:12 INFO    opendrift.models.basemodel:1985: 2024-05-26 13:38:08.401515 - step 48 of 96 - 500 active elements (0 deactivated)
14:09:12 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:12 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:12 DEBUG   opendrift.models.basemodel:2004:               57.55597630550973 <- latitude  -> 57.86488558700276
14:09:12 DEBUG   opendrift.models.basemodel:2009:               10.401301733445703 <- longitude -> 10.728261344978018
14:09:12 DEBUG   opendrift.models.basemodel:2014:               -33.65596464749575   <- z ->   0.0
14:09:12 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:12 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:12 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:12 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:12 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 13:00:00 (before)
                2024-05-26 14:00:00 (after)
14:09:12 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 13:00:00) in space  (linearNDFast)
14:09:12 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:12 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 14:00:00) in space  (linearNDFast)
14:09:12 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:12 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 13:00:00, weight 0.36) and
                      after (2024-05-26 14:00:00, weight 0.64) in time
14:09:12 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:12 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.59870929386785 and -59.27174967059981 degrees.
14:09:12 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.59870929386785 and -59.27174967059981 degrees.
14:09:12 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:12 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:12 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:12 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:12 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:12 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:12 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:12 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:12 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:12 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:12 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:12 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:12 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:12 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:12 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:12 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:12 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:12 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:12 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:12 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:12 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:12 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.782683 (min) 0.279159 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.135996 (min) 0.827846 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -3.58264 (min) -0.393738 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -3.83516 (min) 0.360611 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.1364 (min) 100.568 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.94677 (min) 16.8912 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.5852 (min) 34.4054 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000556236 (min) 0.000959042 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:12 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:12 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:12 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:12 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:12 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:12 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
14:09:12 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 2]
14:09:12 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0]
14:09:12 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 446.   0.]
 [  0.   0.   0.   0.   0.]
 [110.   0.   0. 459.   0.]
 [  4.   0. 839.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:12 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:12 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:12 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:12 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:12 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01870704848483575
14:09:12 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:12 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:12 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:12 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:12 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:12 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 16
14:09:12 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:12 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 16 elements
14:09:12 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:12 INFO    opendrift.models.chemicaldrift:1861: partitioning: [117, 0, 320, 63, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:12 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:12 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:12 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:12 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:12 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:12 INFO    opendrift.models.basemodel:1985: 2024-05-26 14:08:08.401515 - step 49 of 96 - 500 active elements (0 deactivated)
14:09:12 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:12 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:12 DEBUG   opendrift.models.basemodel:2004:               57.55756567237802 <- latitude  -> 57.86560802060132
14:09:12 DEBUG   opendrift.models.basemodel:2009:               10.393845798690867 <- longitude -> 10.729311961593753
14:09:12 DEBUG   opendrift.models.basemodel:2014:               -35.81324746684343   <- z ->   0.0
14:09:12 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:12 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:12 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:12 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:12 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:12 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 14:00:00 (before)
                2024-05-26 15:00:00 (after)
14:09:14 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:09:14 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:09:14 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:09:14 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:09:14 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:09:14 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:09:14 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 56x59x7) for time after (2024-05-26 15:00:00)
14:09:14 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 14:00:00) in space  (linearNDFast)
14:09:14 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:14 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 15:00:00) in space  (linearNDFast)
14:09:14 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:14 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 14:00:00, weight 0.86) and
                      after (2024-05-26 15:00:00, weight 0.14) in time
14:09:14 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:14 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.606165224295474 and -59.27069906568846 degrees.
14:09:14 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.606165224295474 and -59.27069906568846 degrees.
14:09:14 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:14 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:14 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:14 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:14 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:14 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:14 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:14 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:14 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:14 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:14 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:14 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:14 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:14 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:14 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:14 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:14 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:14 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:14 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:14 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.803112 (min) 0.198524 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.114673 (min) 0.928498 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -4.26572 (min) -0.728048 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -3.3136 (min) 1.26126 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.2666 (min) 100.221 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.84107 (min) 17.1056 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.5778 (min) 34.4087 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00100852 (min) 0.00104138 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:14 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:09:14 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:14 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:14 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:14 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:14 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
14:09:14 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 0 2 2 0]
14:09:14 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 3 0 0 3]
14:09:14 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 448.   0.]
 [  0.   0.   0.   0.   0.]
 [115.   0.   0. 476.   0.]
 [  4.   0. 855.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:14 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:14 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:14 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:14 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:14 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.016304978044080404
14:09:14 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:14 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:14 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9
14:09:14 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:14 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements
14:09:14 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:14 INFO    opendrift.models.chemicaldrift:1861: partitioning: [120, 0, 313, 67, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:14 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:14 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:14 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:14 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:14 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:14 INFO    opendrift.models.basemodel:1985: 2024-05-26 14:38:08.401515 - step 50 of 96 - 500 active elements (0 deactivated)
14:09:14 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:14 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:14 DEBUG   opendrift.models.basemodel:2004:               57.55950284391084 <- latitude  -> 57.8664219040327
14:09:14 DEBUG   opendrift.models.basemodel:2009:               10.3834572235876 <- longitude -> 10.730529579822312
14:09:14 DEBUG   opendrift.models.basemodel:2014:               -34.24046589623407   <- z ->   0.0
14:09:14 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:14 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:14 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:14 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:14 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 14:00:00 (before)
                2024-05-26 15:00:00 (after)
14:09:14 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 14:00:00) in space  (linearNDFast)
14:09:14 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:14 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 15:00:00) in space  (linearNDFast)
14:09:14 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:14 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 14:00:00, weight 0.36) and
                      after (2024-05-26 15:00:00, weight 0.64) in time
14:09:14 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:14 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.61655380180379 and -59.26948143692941 degrees.
14:09:14 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.61655380180379 and -59.26948143692941 degrees.
14:09:14 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:14 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:14 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:14 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:14 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:14 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:14 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:14 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:14 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:14 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:14 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:14 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:14 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:14 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:14 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:14 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:14 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:14 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:14 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:14 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.780863 (min) 0.218331 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.158862 (min) 0.746014 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -5.34139 (min) -1.24433 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.0040926 (min) 4.02086 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.2666 (min) 99.4381 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.89152 (min) 17.2569 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.457 (min) 34.4091 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00058492 (min) 0.000971109 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:14 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:14 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
14:09:14 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:14 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:14 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:14 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:14 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
14:09:14 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2 2]
14:09:14 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0 0]
14:09:14 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 449.   0.]
 [  0.   0.   0.   0.   0.]
 [119.   0.   0. 487.   0.]
 [  4.   0. 864.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:14 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:14 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:14 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:14 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:14 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.027473374346480877
14:09:14 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:14 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:14 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:14 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:14 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
14:09:14 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:14 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
14:09:14 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:14 INFO    opendrift.models.chemicaldrift:1861: partitioning: [123, 0, 301, 76, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:14 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:14 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:14 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:14 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:14 INFO    opendrift.models.basemodel:1985: 2024-05-26 15:08:08.401515 - step 51 of 96 - 500 active elements (0 deactivated)
14:09:14 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:14 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:14 DEBUG   opendrift.models.basemodel:2004:               57.56152081646726 <- latitude  -> 57.86720495730765
14:09:14 DEBUG   opendrift.models.basemodel:2009:               10.368564280180046 <- longitude -> 10.731575775386617
14:09:14 DEBUG   opendrift.models.basemodel:2014:               -36.9917625349146   <- z ->   0.0
14:09:14 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:14 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:14 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:14 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:14 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:14 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 15:00:00 (before)
                2024-05-26 16:00:00 (after)
14:09:16 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:09:16 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:09:16 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:09:16 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:09:16 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:09:16 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:09:16 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 55x62x7) for time after (2024-05-26 16:00:00)
14:09:16 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 15:00:00) in space  (linearNDFast)
14:09:16 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:16 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 16:00:00) in space  (linearNDFast)
14:09:16 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
14:09:16 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 15:00:00, weight 0.86) and
                      after (2024-05-26 16:00:00, weight 0.14) in time
14:09:16 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:16 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.63144673494233 and -59.26843523140686 degrees.
14:09:16 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.63144673494233 and -59.26843523140686 degrees.
14:09:16 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:16 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:16 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:16 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:16 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:16 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:16 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:16 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:16 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:16 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:16 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:16 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:16 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:16 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:16 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:16 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:16 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:16 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:16 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:16 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:16 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:16 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:16 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:16 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:16 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:16 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:16 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:16 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:16 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.789579 (min) 0.249013 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.183529 (min) 0.852271 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -6.18964 (min) -0.901907 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.68546 (min) 7.922 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.2666 (min) 98.6745 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.82799 (min) 17.178 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.421 (min) 34.4193 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000456102 (min) 0.000834953 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:16 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:16 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:16 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:16 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:16 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:16 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:16 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:16 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
14:09:16 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 2 2]
14:09:16 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 0 0]
14:09:16 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 449.   0.]
 [  0.   0.   0.   0.   0.]
 [125.   0.   0. 499.   0.]
 [  4.   0. 868.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:16 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:16 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:16 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:16 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:16 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05755420819476109
14:09:16 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:16 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:16 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:16 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:16 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:16 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
14:09:16 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:09:16 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:16 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:16 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:16 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:16 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:16 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:16 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
14:09:16 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:16 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
14:09:16 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:16 INFO    opendrift.models.chemicaldrift:1861: partitioning: [129, 0, 294, 77, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:16 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:16 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:16 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:16 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:16 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:16 INFO    opendrift.models.basemodel:1985: 2024-05-26 15:38:08.401515 - step 52 of 96 - 500 active elements (0 deactivated)
14:09:16 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:16 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:16 DEBUG   opendrift.models.basemodel:2004:               57.56343791946445 <- latitude  -> 57.86802178251088
14:09:16 DEBUG   opendrift.models.basemodel:2009:               10.357833005518298 <- longitude -> 10.731869647094797
14:09:16 DEBUG   opendrift.models.basemodel:2014:               -38.79059905238552   <- z ->   0.0
14:09:16 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:16 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:16 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:16 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:16 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:16 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:16 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:16 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:16 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 15:00:00 (before)
                2024-05-26 16:00:00 (after)
14:09:16 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 15:00:00) in space  (linearNDFast)
14:09:16 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:17 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 16:00:00) in space  (linearNDFast)
14:09:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:17 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 15:00:00, weight 0.36) and
                      after (2024-05-26 16:00:00, weight 0.64) in time
14:09:17 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.642178016071576 and -59.26814137375242 degrees.
14:09:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.642178016071576 and -59.26814137375242 degrees.
14:09:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:17 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:17 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:17 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:17 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.827751 (min) 0.317258 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.215678 (min) 0.705647 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -5.97364 (min) -3.83985 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.99672 (min) 5.6297 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.2666 (min) 98.6653 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.83594 (min) 16.9782 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.5481 (min) 34.4243 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000624552 (min) 0.000818814 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:17 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:17 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:17 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:17 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:17 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:17 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:17 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:17 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
14:09:17 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 2]
14:09:17 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 0]
14:09:17 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 451.   0.]
 [  0.   0.   0.   0.   0.]
 [127.   0.   0. 505.   0.]
 [  4.   0. 873.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:17 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:17 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:17 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0460905297086571
14:09:17 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:17 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:17 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:17 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:17 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:17 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:17 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
14:09:17 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
14:09:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:17 INFO    opendrift.models.chemicaldrift:1861: partitioning: [129, 0, 285, 86, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:17 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:17 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:17 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:17 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:17 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:17 INFO    opendrift.models.basemodel:1985: 2024-05-26 16:08:08.401515 - step 53 of 96 - 500 active elements (0 deactivated)
14:09:17 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:17 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:17 DEBUG   opendrift.models.basemodel:2004:               57.56439769745794 <- latitude  -> 57.869375865178625
14:09:17 DEBUG   opendrift.models.basemodel:2009:               10.335515777063845 <- longitude -> 10.731320988673295
14:09:17 DEBUG   opendrift.models.basemodel:2014:               -38.701752914039425   <- z ->   0.0
14:09:17 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:17 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 16:00:00 (before)
                2024-05-26 17:00:00 (after)
14:09:19 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:09:19 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:09:19 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:09:19 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:09:19 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:09:19 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:09:19 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 54x64x7) for time after (2024-05-26 17:00:00)
14:09:19 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 16:00:00) in space  (linearNDFast)
14:09:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
14:09:19 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 17:00:00) in space  (linearNDFast)
14:09:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:19 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 16:00:00, weight 0.86) and
                      after (2024-05-26 17:00:00, weight 0.14) in time
14:09:19 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.66449525459271 and -59.26869001915142 degrees.
14:09:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.66449525459271 and -59.26869001915142 degrees.
14:09:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:19 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:19 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:19 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.86938 (min) 0.224145 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.213334 (min) 0.773458 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -7.13682 (min) -3.53285 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.33924 (min) 4.48373 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.2666 (min) 99.6209 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.82268 (min) 16.8205 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.578 (min) 34.4319 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000303753 (min) 0.000780302 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:19 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:19 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:19 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:19 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:19 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:19 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:19 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
14:09:19 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 2 2 0 2]
14:09:19 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 0 0 3 0]
14:09:19 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 454.   0.]
 [  0.   0.   0.   0.   0.]
 [131.   0.   0. 513.   0.]
 [  4.   0. 874.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:19 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:19 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:19 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.045667005415375606
14:09:19 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:19 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:19 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:19 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:19 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2
14:09:19 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
14:09:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:19 INFO    opendrift.models.chemicaldrift:1861: partitioning: [130, 0, 276, 94, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:19 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:19 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:19 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:19 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:19 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:19 INFO    opendrift.models.basemodel:1985: 2024-05-26 16:38:08.401515 - step 54 of 96 - 500 active elements (0 deactivated)
14:09:19 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:19 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:19 DEBUG   opendrift.models.basemodel:2004:               57.56504183485871 <- latitude  -> 57.87222516809339
14:09:19 DEBUG   opendrift.models.basemodel:2009:               10.321011634177616 <- longitude -> 10.730258845848741
14:09:19 DEBUG   opendrift.models.basemodel:2014:               -37.27936969858253   <- z ->   -0.028753132175903806
14:09:19 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 16:00:00 (before)
                2024-05-26 17:00:00 (after)
14:09:19 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 16:00:00) in space  (linearNDFast)
14:09:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:19 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 17:00:00) in space  (linearNDFast)
14:09:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:19 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 16:00:00, weight 0.36) and
                      after (2024-05-26 17:00:00, weight 0.64) in time
14:09:19 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.67899938688542 and -59.26975217806535 degrees.
14:09:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.67899938688542 and -59.26975217806535 degrees.
14:09:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:19 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:19 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:19 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.930585 (min) 0.241049 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.178905 (min) 0.839081 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -6.69685 (min) -3.52316 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.73584 (min) 4.86085 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.67066 (min) 99.1144 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.82703 (min) 16.8297 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.5476 (min) 34.4282 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000289882 (min) 0.000631517 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:19 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:19 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:19 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:19 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:19 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:19 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:19 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:19 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
14:09:19 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 0]
14:09:19 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 3]
14:09:19 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 455.   0.]
 [  0.   0.   0.   0.   0.]
 [135.   0.   0. 520.   0.]
 [  4.   0. 876.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:19 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:19 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:19 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04527232849170309
14:09:19 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:19 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:19 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:19 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:19 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:19 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
14:09:19 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
14:09:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:19 INFO    opendrift.models.chemicaldrift:1861: partitioning: [133, 0, 265, 102, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:19 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:19 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:19 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:19 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:19 INFO    opendrift.models.basemodel:1985: 2024-05-26 17:08:08.401515 - step 55 of 96 - 500 active elements (0 deactivated)
14:09:19 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:19 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:19 DEBUG   opendrift.models.basemodel:2004:               57.56556660784152 <- latitude  -> 57.87259979838662
14:09:19 DEBUG   opendrift.models.basemodel:2009:               10.317117078586142 <- longitude -> 10.72665687037426
14:09:19 DEBUG   opendrift.models.basemodel:2014:               -39.530516606000134   <- z ->   0.0
14:09:19 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 17:00:00 (before)
                2024-05-26 18:00:00 (after)
14:09:22 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:09:22 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:09:22 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:09:22 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:09:22 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:09:22 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:09:22 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 54x66x7) for time after (2024-05-26 18:00:00)
14:09:22 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 17:00:00) in space  (linearNDFast)
14:09:22 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:22 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 18:00:00) in space  (linearNDFast)
14:09:22 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:22 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 17:00:00, weight 0.86) and
                      after (2024-05-26 18:00:00, weight 0.14) in time
14:09:22 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:22 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.68289395239644 and -59.27335416081931 degrees.
14:09:22 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.68289395239644 and -59.27335416081931 degrees.
14:09:22 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:22 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:22 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:22 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:22 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:22 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:22 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:22 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:22 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:22 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:22 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:22 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:22 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:22 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:22 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:22 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:22 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:22 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:22 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:22 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:22 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:22 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.912014 (min) 0.438328 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.142265 (min) 0.852569 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -6.99912 (min) -3.08786 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.22885 (min) 6.04787 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 8.88746 (min) 98.5813 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.8248 (min) 17.0524 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.6402 (min) 34.436 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000523705 (min) 0.000465741 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:22 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:22 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:22 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:22 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:22 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:22 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:22 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 1
14:09:22 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2]
14:09:22 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0]
14:09:22 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 455.   0.]
 [  0.   0.   0.   0.   0.]
 [136.   0.   0. 528.   0.]
 [  4.   0. 877.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:22 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:22 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:22 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:22 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:22 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.048752272371843035
14:09:22 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:22 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:22 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:22 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:22 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:22 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:22 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:22 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:22 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:22 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:22 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:22 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:22 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:22 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:22 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:22 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:22 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
14:09:22 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:22 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
14:09:22 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:22 INFO    opendrift.models.chemicaldrift:1861: partitioning: [134, 0, 259, 107, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:22 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:22 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:22 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:22 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:22 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:22 INFO    opendrift.models.basemodel:1985: 2024-05-26 17:38:08.401515 - step 56 of 96 - 500 active elements (0 deactivated)
14:09:22 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:22 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:22 DEBUG   opendrift.models.basemodel:2004:               57.56620079744246 <- latitude  -> 57.87318310505152
14:09:22 DEBUG   opendrift.models.basemodel:2009:               10.314418063154095 <- longitude -> 10.72515161356393
14:09:22 DEBUG   opendrift.models.basemodel:2014:               -42.00579969601741   <- z ->   0.0
14:09:22 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:22 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:22 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:22 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:22 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 17:00:00 (before)
                2024-05-26 18:00:00 (after)
14:09:22 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 17:00:00) in space  (linearNDFast)
14:09:22 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:22 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 18:00:00) in space  (linearNDFast)
14:09:22 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:22 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 17:00:00, weight 0.36) and
                      after (2024-05-26 18:00:00, weight 0.64) in time
14:09:22 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:22 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.68559296239851 and -59.27485941961224 degrees.
14:09:22 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.68559296239851 and -59.27485941961224 degrees.
14:09:22 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:22 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:22 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:22 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:22 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:22 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:22 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:22 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:22 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:22 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:22 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:22 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:22 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:22 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:22 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:22 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:22 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:22 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:22 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:22 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:22 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:22 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.931248 (min) 0.311368 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0804175 (min) 0.774486 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -6.6747 (min) -2.16681 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.06367 (min) 5.54562 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 8.05604 (min) 97.9911 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.82374 (min) 16.8013 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.4523 (min) 34.4506 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00048064 (min) 0.000526926 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:22 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:22 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:22 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:22 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:22 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:22 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:22 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:22 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 1
14:09:22 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2]
14:09:22 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0]
14:09:22 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 455.   0.]
 [  0.   0.   0.   0.   0.]
 [137.   0.   0. 534.   0.]
 [  4.   0. 878.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:22 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:22 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:22 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:22 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:22 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04112110339048211
14:09:22 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:22 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:22 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:22 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:22 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:22 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:22 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:22 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:22 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:22 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
14:09:22 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:22 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:22 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:22 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:22 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:22 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:22 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:22 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:22 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:22 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7
14:09:22 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:22 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 7 elements
14:09:22 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:22 INFO    opendrift.models.chemicaldrift:1861: partitioning: [135, 0, 256, 109, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:22 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:22 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:22 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:22 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:22 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:22 INFO    opendrift.models.basemodel:1985: 2024-05-26 18:08:08.401515 - step 57 of 96 - 500 active elements (0 deactivated)
14:09:22 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:22 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:22 DEBUG   opendrift.models.basemodel:2004:               57.56682523368822 <- latitude  -> 57.87401074426943
14:09:22 DEBUG   opendrift.models.basemodel:2009:               10.311873969479429 <- longitude -> 10.723235804283629
14:09:22 DEBUG   opendrift.models.basemodel:2014:               -44.29348006974884   <- z ->   -0.16994062776445895
14:09:22 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:22 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:22 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:22 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:22 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:22 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 18:00:00 (before)
                2024-05-26 19:00:00 (after)
14:09:26 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:09:26 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:09:26 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:09:26 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:09:26 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:09:26 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:09:26 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 53x66x7) for time after (2024-05-26 19:00:00)
14:09:26 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 18:00:00) in space  (linearNDFast)
14:09:26 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:26 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 19:00:00) in space  (linearNDFast)
14:09:26 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:26 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 18:00:00, weight 0.86) and
                      after (2024-05-26 19:00:00, weight 0.14) in time
14:09:26 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:26 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.68813706075086 and -59.27677522358592 degrees.
14:09:26 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.68813706075086 and -59.27677522358592 degrees.
14:09:26 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:26 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:26 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:26 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:26 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:26 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:26 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:26 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:26 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:26 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:26 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:26 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:26 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:26 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:26 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:26 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:26 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:26 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:26 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:26 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:26 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:26 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.89868 (min) 0.312179 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.100649 (min) 0.930202 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -6.30835 (min) -1.76211 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.44252 (min) 5.81457 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 1 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 7.46531 (min) 97.419 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.85039 (min) 17.187 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.5365 (min) 34.4692 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000572521 (min) 0.000543322 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:26 DEBUG   opendrift.models.basemodel:662: 1 elements hit coastline, moving back to water
14:09:26 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
14:09:26 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:26 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:26 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:26 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:26 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
14:09:26 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 2]
14:09:26 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 0]
14:09:26 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 455.   0.]
 [  0.   0.   0.   0.   0.]
 [142.   0.   0. 543.   0.]
 [  4.   0. 885.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:26 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:26 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:26 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:26 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:26 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.037537773587978975
14:09:26 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:26 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:26 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:26 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:26 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:26 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:26 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:26 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
14:09:26 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:26 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
14:09:26 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:26 INFO    opendrift.models.chemicaldrift:1861: partitioning: [140, 0, 253, 107, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:26 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:26 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:26 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:26 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:26 INFO    opendrift.models.basemodel:1985: 2024-05-26 18:38:08.401515 - step 58 of 96 - 500 active elements (0 deactivated)
14:09:26 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:26 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:26 DEBUG   opendrift.models.basemodel:2004:               57.56771581234656 <- latitude  -> 57.87491990591386
14:09:26 DEBUG   opendrift.models.basemodel:2009:               10.309400947747783 <- longitude -> 10.723150267156532
14:09:26 DEBUG   opendrift.models.basemodel:2014:               -46.3018320030521   <- z ->   0.0
14:09:26 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:26 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:26 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:26 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:26 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 18:00:00 (before)
                2024-05-26 19:00:00 (after)
14:09:26 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 18:00:00) in space  (linearNDFast)
14:09:26 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:26 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 19:00:00) in space  (linearNDFast)
14:09:26 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:26 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 18:00:00, weight 0.36) and
                      after (2024-05-26 19:00:00, weight 0.64) in time
14:09:26 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:26 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.69061006943565 and -59.276860758420035 degrees.
14:09:26 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.69061006943565 and -59.276860758420035 degrees.
14:09:26 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:26 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:26 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:26 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:26 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:26 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:26 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:26 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:26 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:26 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:26 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:26 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:26 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:26 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:26 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:26 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:26 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:26 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:26 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:26 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:26 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:26 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.899567 (min) 0.380617 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0933533 (min) 1.01365 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -5.6063 (min) -2.52816 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.09424 (min) 4.76479 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 7.2092 (min) 96.9939 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.83378 (min) 16.7816 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.4981 (min) 34.4778 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000455016 (min) 0.00104646 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:26 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:26 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
14:09:26 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
14:09:26 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:26 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:26 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:26 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:26 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
14:09:26 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 2 0]
14:09:26 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 0 3]
14:09:26 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 459.   0.]
 [  0.   0.   0.   0.   0.]
 [144.   0.   0. 546.   0.]
 [  4.   0. 890.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:26 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:26 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:26 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:26 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:26 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.038826563629392734
14:09:26 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:26 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:26 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:26 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:26 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:26 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:26 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:26 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:26 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
14:09:26 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
14:09:26 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
14:09:26 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
14:09:26 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
14:09:26 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:26 INFO    opendrift.models.chemicaldrift:1861: partitioning: [138, 0, 252, 110, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
14:09:26 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
14:09:26 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
14:09:26 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
14:09:26 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:26 DEBUG   opendrift.models.basemodel:1984: ======================================================================
14:09:26 INFO    opendrift.models.basemodel:1985: 2024-05-26 19:08:08.401515 - step 59 of 96 - 500 active elements (0 deactivated)
14:09:26 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
14:09:26 DEBUG   opendrift.models.basemodel:1993: ======================================================================
14:09:26 DEBUG   opendrift.models.basemodel:2004:               57.5680307972051 <- latitude  -> 57.8802105889533
14:09:26 DEBUG   opendrift.models.basemodel:2009:               10.306749015818477 <- longitude -> 10.722696228942388
14:09:26 DEBUG   opendrift.models.basemodel:2014:               -46.52166548217211   <- z ->   0.0
14:09:26 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
14:09:26 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:09:26 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:26 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:26 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
14:09:26 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-05-26 19:00:00 (before)
                2024-05-26 20:00:00 (after)
14:09:30 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
14:09:30 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
14:09:30 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
14:09:30 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
14:09:30 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
14:09:30 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'y_sea_water_velocity']
14:09:30 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 53x67x7) for time after (2024-05-26 20:00:00)
14:09:30 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-05-26 19:00:00) in space  (linearNDFast)
14:09:30 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:30 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-05-26 20:00:00) in space  (linearNDFast)
14:09:30 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 11 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 11 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 11 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 11 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 11 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 11 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 11 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 2
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
14:09:30 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-05-26 19:00:00, weight 0.86) and
                      after (2024-05-26 20:00:00, weight 0.14) in time
14:09:30 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
14:09:30 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.69326202297496 and -59.2773147864866 degrees.
14:09:30 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.69326202297496 and -59.2773147864866 degrees.
14:09:30 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:30 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:30 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
14:09:30 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:30 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
14:09:30 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:30 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:30 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
14:09:30 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:30 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:30 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:30 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
14:09:30 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
14:09:30 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
14:09:30 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
14:09:30 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
14:09:30 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
14:09:30 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
14:09:30 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
14:09:30 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
14:09:30 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
14:09:30 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
14:09:30 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
14:09:30 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
14:09:30 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
14:09:30 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
14:09:30 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
14:09:30 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
14:09:30 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.885293 (min) 0.330402 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.105042 (min) 0.984106 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -5.61678 (min) -3.27149 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.20893 (min) 5.07173 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 1 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 7.24031 (min) 97.1278 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 6.84362 (min) 17.1311 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 15.5478 (min) 34.4769 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000437642 (min) 0.00113222 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
14:09:30 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
14:09:30 DEBUG   opendrift.models.basemodel:662: 1 elements hit coastline, moving back to water
14:09:30 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
14:09:30 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
14:09:30 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
14:09:30 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
14:09:30 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
14:09:30 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
14:09:30 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 0 2 2]
14:09:30 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 3 0 0]
14:09:30 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 461.   0.]
 [  0.   0.   0.   0.   0.]
 [148.   0.   0. 551.   0.]
 [  4.   0. 896.   0.   0.]
 [  0.   0.   0.   0.   0.]]
14:09:30 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
14:09:30 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
14:09:30 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
14:09:30 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
14:09:30 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.039039474940004565
14:09:30 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
14:09:30 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
14:09:30 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
14:09:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:30 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
14:09:30 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
14:09:30 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:30 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:30 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
14:09:30 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
14:09:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
14:09:30 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
14:09:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
14:09:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
14:09:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
14:09:30 DEBUG   opendrift