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ChemicalDrift - Transport and fate of organic compounds
from opendrift.readers import reader_netCDF_CF_generic
from opendrift.models.chemicaldrift import ChemicalDrift
from opendrift.readers.reader_constant import Reader as ConstantReader
from datetime import timedelta, datetime
import matplotlib.pyplot as plt
import numpy as np
o = ChemicalDrift(loglevel=0, seed=0)
# Norkyst
reader_norkyst = reader_netCDF_CF_generic.Reader('https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be')
mixed_layer = ConstantReader({'ocean_mixed_layer_thickness': 40})
o.add_reader([reader_norkyst,mixed_layer])
o.set_config('drift:vertical_mixing', True)
o.set_config('vertical_mixing:diffusivitymodel', 'windspeed_Large1994')
o.set_config('chemical:particle_diameter',30.e-6) # m
o.set_config('chemical:particle_diameter_uncertainty',5.e-6) # m
o.set_config('chemical:sediment:resuspension_critvel',0.15) # m/s
o.set_config('chemical:transformations:volatilization', True)
o.set_config('chemical:transformations:degradation', True)
o.set_config('chemical:transformations:degradation_mode', 'OverallRateConstants')
o.set_config('seed:LMM_fraction',.9)
o.set_config('seed:particle_fraction',.1)
o.set_config('general:coastline_action', 'previous')
o.init_chemical_compound("Phenanthrene")
# Modify half-life times with unrealistic values for this demo
o.set_config('chemical:transformations:t12_W_tot', 6.) # hours
o.set_config('chemical:transformations:t12_S_tot', 12.) # hours
o.list_configspec()
17:16:46 DEBUG opendrift.config:168: Adding 18 config items from __init__
17:16:46 DEBUG opendrift.config:178: Overwriting config item readers:max_number_of_fails
17:16:46 DEBUG opendrift.config:168: Adding 13 config items from __init__
17:16:46 INFO opendrift:513: OpenDriftSimulation initialised (version 1.14.2 / v1.14.2-88-gf09b7bd)
17:16:46 DEBUG opendrift.config:168: Adding 19 config items from oceandrift
17:16:46 DEBUG opendrift.config:178: Overwriting config item seed:z
17:16:46 DEBUG opendrift.config:168: Adding 71 config items from chemicaldrift
17:16:46 INFO opendrift.readers:61: Opening file with xr.open_dataset
17:16:46 DEBUG gribapi.bindings:58: eccodes lib search: trying to find binary wheel
17:16:46 DEBUG gribapi.bindings:65: eccodes lib search: looking in /opt/conda/envs/opendrift/lib/python3.13/site-packages/eccodes.libs
17:16:46 DEBUG gribapi.bindings:65: eccodes lib search: looking in /opt/conda/envs/opendrift/lib/python3.13/site-packages/eccodes/.dylibs
17:16:46 DEBUG gribapi.bindings:65: eccodes lib search: looking in /opt/conda/envs/opendrift/lib/python3.13/site-packages/eccodes
17:16:46 DEBUG gribapi.bindings:91: eccodes lib search: did not find library from wheel; try to find as separate lib
17:16:46 DEBUG gribapi.bindings:99: eccodes lib search: findlibs returned /opt/conda/envs/opendrift/lib/libeccodes.so
17:16:48 DEBUG opendrift.readers.reader_netCDF_CF_generic:128: Finding coordinate variables.
17:16:48 DEBUG opendrift.readers.reader_netCDF_CF_generic:143: Parsing CF grid mapping dictionary: {'grid_mapping_name': 'polar_stereographic', 'straight_vertical_longitude_from_pole': np.float64(70.0), 'latitude_of_projection_origin': np.float64(90.0), 'standard_parallel': np.float64(60.0), 'false_easting': np.float64(3192800.0), 'false_northing': np.float64(1784000.0), 'semi_major_axis': np.float64(6378137.0), 'semi_minor_axis': np.float64(6356752.3142), 'proj4': '+proj=stere +lat_0=90 +lat_ts=60 +lon_0=70 +x_0=3192800 +y_0=1784000 +a=6378137 +b=6356752.3142 +units=m +no_defs +type=crs'}
17:16:48 DEBUG pyproj:40: PROJ_ERROR: proj_create: several objects matching this name: Krovak (Greenwich), Equal Earth Greenwich, Laborde Grid (Greenwich), Modified Krovak (Greenwich), Krovak East North (Greenwich), Modified Krovak East North (Greenwich), ...
17:16:48 INFO opendrift.readers.reader_netCDF_CF_generic:332: Detected dimensions: {'x': 'X', 'y': 'Y', 'z': 'depth', 'time': 'time'}
17:16:48 DEBUG opendrift.readers.reader_netCDF_CF_generic:368: Skipped variables without standard_name: ['angle', 'tke', 'ubar', 'vbar']
17:16:48 DEBUG opendrift.readers.basereader.variables:614: Setting buffer size 25 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 5 m/s and time span of 1:00:00
17:16:48 DEBUG opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
17:16:48 DEBUG opendrift.readers.basereader.variables:569: Adding variable mapping: ['x_wind', 'y_wind'] -> wind_speed
17:16:48 DEBUG opendrift.readers.basereader.variables:569: Adding variable mapping: ['x_sea_water_velocity', 'y_sea_water_velocity'] -> sea_water_speed
17:16:48 DEBUG opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
17:16:48 DEBUG opendrift.models.basemodel.environment:312: Added reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:16:48 DEBUG opendrift.models.basemodel.environment:312: Added reader constant_reader
environment:constant:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:sea_surface_height [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_surface_height [0] float min: None, max: None [None] Fallback value for s...
environment:constant:x_wind [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:x_wind [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:y_wind [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:y_wind [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:fallback:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:constant:sea_floor_depth_below_sea_level [None] float min: -20, max: 12000 [None] Depth of seafloor...
environment:fallback:sea_floor_depth_below_sea_level [10000] float min: -20, max: 12000 [None] Depth of seafloor...
environment:constant:ocean_vertical_diffusivity [None] float min: 0, max: 1 [None] Use constant value f...
environment:fallback:ocean_vertical_diffusivity [0.0001] float min: 0, max: 1 [None] Fallback value for o...
environment:constant:sea_water_temperature [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_temperature [10] float min: None, max: None [None] Fallback value for s...
environment:constant:sea_water_salinity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_salinity [34] float min: None, max: None [None] Fallback value for s...
environment:constant:upward_sea_water_velocity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:upward_sea_water_velocity [0] float min: None, max: None [None] Fallback value for u...
environment:constant:spm [None] float min: None, max: None [None] Use constant value f...
environment:fallback:spm [1] float min: None, max: None [None] Fallback value for s...
environment:constant:ocean_mixed_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:ocean_mixed_layer_thickness [50] float min: None, max: None [None] Fallback value for o...
environment:constant:active_sediment_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:active_sediment_layer_thickness [0.03] float min: None, max: None [None] Fallback value for a...
environment:constant:doc [None] float min: None, max: None [None] Use constant value f...
environment:fallback:doc [0.0] float min: None, max: None [None] Fallback value for d...
environment:constant:sea_water_ph_reported_on_total_scale [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_ph_reported_on_total_scale [8.1] float min: None, max: None [None] Fallback value for s...
environment:constant:pH_sediment [None] float min: None, max: None [None] Use constant value f...
environment:fallback:pH_sediment [6.9] float min: None, max: None [None] Fallback value for p...
general:use_auto_landmask [True] bool A built-in GSHHG glo...
drift:current_uncertainty [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:current_uncertainty_uniform [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:max_speed [2.0] float min: 0, max: inf [seconds] Typical maximum spee...
readers:max_number_of_fails [1] int min: 0, max: 1000000.0 [number] Readers are discarde...
general:simulation_name [] str min length 0, max length 64 Name of simulation...
general:coastline_action [previous] enum ['none', 'stranding', 'previous'] None means that obje...
general:coastline_approximation_precision [0.001] float min: 0.0001, max: 0.005 [degrees] The precision of the...
general:time_step_minutes [60] float min: 0.01, max: 1440 [minutes] Calculation time ste...
general:time_step_output_minutes [None] float min: 1, max: 1440 [minutes] Output time step, i....
seed:ocean_only [True] bool If True, elements se...
seed:number [1] int min: 1, max: 100000000 [1] The number of elemen...
drift:max_age_seconds [None] float min: 0, max: inf [seconds] Elements will be dea...
drift:advection_scheme [euler] enum ['euler', 'runge-kutta', 'runge-kutta4'] Numerical advection ...
drift:horizontal_diffusivity [0] float min: 0, max: 100000 [m2/s] Add horizontal diffu...
drift:profiles_depth [50] float min: 0, max: None [meters] Environment profiles...
drift:wind_uncertainty [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:relative_wind [False] bool If True, wind drift ...
drift:deactivate_north_of [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_south_of [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_east_of [None] float min: -360, max: 360 [degrees] Elements are deactiv...
drift:deactivate_west_of [None] float min: -360, max: 360 [degrees] Elements are deactiv...
seed:origin_marker [0] float min: None, max: None [None] An integer kept cons...
seed:z [0] float min: -10000, max: 0 [m] Depth below sea leve...
seed:wind_drift_factor [0.02] float min: None, max: None [1] Elements at surface ...
seed:current_drift_factor [1] float min: None, max: None [1] Elements are moved w...
seed:terminal_velocity [0.0] float min: None, max: None [m/s] Terminal rise/sinkin...
seed:diameter [0.0] float min: None, max: None [m] Seeding value of dia...
seed:density [2650.0] float min: None, max: None [kg/m^3] Seeding value of den...
seed:specie [0] float min: None, max: None [] Seeding value of spe...
seed:mass [1000.0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_water [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_sediment [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_volatilized [0] float min: None, max: None [ug] Seeding value of mas...
drift:vertical_advection [True] bool Advect elements with...
drift:vertical_advection_at_surface [True] bool If vertical advectio...
drift:water_column_stretching [False] bool If sea surface eleva...
drift:vertical_advection_correction [False] bool The vertical velocit...
drift:vertical_mixing [True] bool Activate vertical mi...
drift:vertical_mixing_at_surface [True] bool If vertical mixing i...
vertical_mixing:timestep [60] float min: 0.1, max: 3600 [seconds] Time step used for i...
vertical_mixing:diffusivitymodel [windspeed_Large1994] enum ['environment', 'stepfunction', 'windspeed_Sundby1983', 'windspeed_Large1994', 'constant'] Algorithm/source use...
vertical_mixing:background_diffusivity [1.2e-05] float min: 0, max: 1 [m2s-1] Background diffusivi...
vertical_mixing:TSprofiles [False] bool Update T and S profi...
drift:wind_drift_depth [0.1] float min: 0, max: 10 [meters] The direct wind drif...
drift:stokes_drift [True] bool Advection elements w...
drift:stokes_drift_profile [Phillips] enum ['monochromatic', 'exponential', 'Phillips', 'windsea_swell'] Algorithm to calcula...
drift:use_tabularised_stokes_drift [False] bool If True, Stokes drif...
drift:tabularised_stokes_drift_fetch [25000] enum ['5000', '25000', '50000'] The fetch length whe...
general:seafloor_action [lift_to_seafloor] enum ['none', 'lift_to_seafloor', 'deactivate', 'previous'] "deactivate": elemen...
drift:truncate_ocean_model_below_m [None] float min: 0, max: 10000 [m] Ocean model data are...
seed:seafloor [False] bool Elements are seeded ...
chemical:transfer_setup [organics] enum ['Sandnesfj_Al', 'metals', '137Cs_rev', 'custom', 'organics'] ...
chemical:dynamic_partitioning [True] bool Toggle dynamic parti...
chemical:slowly_fraction [False] bool ...
chemical:irreversible_fraction [False] bool ...
chemical:dissolved_diameter [0] float min: 0, max: 0.0001 [m] ...
chemical:particle_diameter [3e-05] float min: 0, max: 0.0001 [m] ...
chemical:particle_concentration_half_depth [20] float min: 0, max: 100 [m] ...
chemical:doc_concentration_half_depth [1000] float min: 0, max: 1000 [m] ...
chemical:particle_diameter_uncertainty [5e-06] float min: 0, max: 0.0001 [m] ...
seed:LMM_fraction [0.9] float min: 0, max: 1 [] ...
seed:particle_fraction [0.1] float min: 0, max: 1 [] ...
chemical:species:LMM [True] bool Toggle LMM species...
chemical:species:LMMcation [False] bool ...
chemical:species:LMManion [False] bool ...
chemical:species:Colloid [False] bool ...
chemical:species:Humic_colloid [False] bool ...
chemical:species:Polymer [False] bool ...
chemical:species:Particle_reversible [True] bool ...
chemical:species:Particle_slowly_reversible [False] bool ...
chemical:species:Particle_irreversible [False] bool ...
chemical:species:Sediment_reversible [True] bool ...
chemical:species:Sediment_slowly_reversible [False] bool ...
chemical:species:Sediment_irreversible [False] bool ...
chemical:transformations:Kd [2.0] float min: 0, max: 1000000000.0 [m3/kg] ...
chemical:transformations:S0 [0.0] float min: 0, max: 100 [PSU] parameter controllin...
chemical:transformations:Dc [1.16e-05] float min: 0, max: 1000000.0 [] ...
chemical:transformations:slow_coeff [0] float min: 0, max: 1000000.0 [] ...
chemical:transformations:volatilization [True] bool Chemical is evaporat...
chemical:transformations:degradation [True] bool Chemical mass is deg...
chemical:transformations:degradation_mode [OverallRateConstants] enum ['OverallRateConstants'] ...
chemical:transformations:dissociation [nondiss] enum ['nondiss', 'acid', 'base', 'amphoter'] ...
chemical:transformations:LogKOW [4.505] float min: -3, max: 10 [Log L/Kg] ...
chemical:transformations:TrefKOW [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_KOC_Sed [-24900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:DeltaH_KOC_DOM [-25900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:Setchenow [0.3026] float min: 0, max: 1 [L/mol] ...
chemical:transformations:pKa_acid [-1] float min: -1, max: 14 [] ...
chemical:transformations:pKa_base [-1] float min: -1, max: 14 [] ...
chemical:transformations:KOC_DOM [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:KOC_sed [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:fOC_SPM [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:fOC_sed [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:aggregation_rate [0] float min: 0, max: 1 [s-1] ...
chemical:transformations:t12_W_tot [6.0] float min: 1, max: None [hours] half life in water, ...
chemical:transformations:Tref_kWt [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kWt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:t12_S_tot [12.0] float min: 1, max: None [hours] half life in sedimen...
chemical:transformations:Tref_kSt [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kSt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:MolWt [178.226] float min: 50, max: 1000 [amu] molecular weight...
chemical:transformations:Henry [4.294e-05] float min: None, max: None [atm m3 mol-1] Henry constant...
chemical:transformations:Vpress [0.0222] float min: None, max: None [Pa] Vapour pressure...
chemical:transformations:Tref_Vpress [25.0] float min: None, max: None [C] Vapour pressure ref ...
chemical:transformations:DeltaH_Vpress [71733.0] float min: -100000.0, max: 115000.0 [J/mol] Enthalpy of volatili...
chemical:transformations:Solub [1.09] float min: None, max: None [g/m3] Solubility...
chemical:transformations:Tref_Solub [25.0] float min: None, max: None [C] Solubility ref temp...
chemical:transformations:DeltaH_Solub [34800.0] float min: -100000.0, max: 100000.0 [J/mol] Enthalpy of solubili...
chemical:sediment:mixing_depth [0.03] float min: 0, max: 100 [m] ...
chemical:sediment:density [2600] float min: 0, max: 10000 [kg/m3] ...
chemical:sediment:effective_fraction [0.9] float min: 0, max: 1 [] ...
chemical:sediment:corr_factor [0.1] float min: 0, max: 10 [] ...
chemical:sediment:porosity [0.6] float min: 0, max: 1 [] ...
chemical:sediment:layer_thickness [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth [1] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_critvel [0.15] float min: 0, max: 1 [m/s] ...
chemical:sediment:burial_rate [3e-05] float min: 0, max: 10 [m/year] ...
chemical:sediment:buried_leaking_rate [0] float min: 0, max: 10 [s-1] ...
chemical:compound [Phenanthrene] enum ['Naphthalene', 'Phenanthrene', 'Fluoranthene', 'Benzo-a-anthracene', 'Benzo-a-pyrene', 'Dibenzo-ah-anthracene', 'C1-Naphthalene', 'Acenaphthene', 'Acenaphthylene', 'Fluorene', 'Dibenzothiophene', 'C2-Naphthalene', 'Anthracene', 'C3-Naphthalene', 'C1-Dibenzothiophene', 'Pyrene', 'C1-Phenanthrene', 'C2-Dibenzothiophene', 'C2-Phenanthrene', 'Benzo-b-fluoranthene', 'Chrysene', 'C3-Dibenzothiophene', 'C3-Phenanthrene', 'Benzo-k-fluoranthene', 'Benzo-ghi-perylene', 'Indeno-123cd-pyrene', 'Copper', 'Cadmium', 'Chromium', 'Lead', 'Vanadium', 'Zinc', 'Nickel', None] ...
Seeding 500 lagrangian elements each representign 2mg og target chemical
td=datetime.today()
time = td - timedelta(days=10)
latseed= 57.6; lonseed= 10.6 # Skagen
ntraj=500
iniz=np.random.rand(ntraj) * -10. # seeding the chemicals in the upper 10m
o.seed_elements(lonseed, latseed, z=iniz, radius=2000,number=ntraj,time=time, mass=2e3)
17:16:48 DEBUG opendrift.models.chemicaldrift:894: Partitioning coefficients (Tref,freshwater)
17:16:48 DEBUG opendrift.models.chemicaldrift:895: KOC_sed: 12953.922406542462 L/KgOC
17:16:48 DEBUG opendrift.models.chemicaldrift:896: KOC_SPM: 12953.922406542462 L/KgOC
17:16:48 DEBUG opendrift.models.chemicaldrift:897: KOC_DOM: 3004.29439651874 L/KgOC
17:16:48 DEBUG opendrift.models.chemicaldrift:909: Kd_sed: 647.6961203271231 L/Kg
17:16:48 DEBUG opendrift.models.chemicaldrift:910: Kd_SPM: 647.6961203271231 L/Kg
17:16:48 DEBUG opendrift.models.chemicaldrift:911: Kd_DOM: 1580.2588525688573 L/Kg
17:16:48 DEBUG opendrift.models.chemicaldrift:1128: nspecies: 5
17:16:48 DEBUG opendrift.models.chemicaldrift:1129: Transfer rates:
[[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
0.00000000e+00]
[4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]
[9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]
[9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
3.16887646e-11]
[0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]]
17:16:48 DEBUG opendrift.models.chemicaldrift:533: Initial partitioning:
17:16:48 DEBUG opendrift.models.chemicaldrift:535: 449 0 LMM
17:16:48 DEBUG opendrift.models.chemicaldrift:535: 0 1 Humic colloid
17:16:48 DEBUG opendrift.models.chemicaldrift:535: 51 2 Particle reversible
17:16:48 DEBUG opendrift.models.chemicaldrift:535: 0 3 Sediment reversible
17:16:48 DEBUG opendrift.models.chemicaldrift:535: 0 4 Sediment slowly reversible
17:16:48 INFO opendrift.models.basemodel.environment:206: Adding a global landmask from GSHHG
17:16:48 DEBUG opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
17:16:53 DEBUG opendrift.models.basemodel.environment:312: Added reader global_landmask
17:16:53 INFO opendrift.models.basemodel.environment:229: Fallback values will be used for the following variables which have no readers:
17:16:53 INFO opendrift.models.basemodel.environment:232: ocean_vertical_diffusivity: 0.000100
17:16:53 INFO opendrift.models.basemodel.environment:232: spm: 1.000000
17:16:53 INFO opendrift.models.basemodel.environment:232: active_sediment_layer_thickness: 0.030000
17:16:53 INFO opendrift.models.basemodel.environment:232: doc: 0.000000
17:16:53 INFO opendrift.models.basemodel.environment:232: sea_water_ph_reported_on_total_scale: 8.100000
17:16:53 INFO opendrift.models.basemodel.environment:232: pH_sediment: 6.900000
17:16:53 DEBUG opendrift:101: Changed mode from Mode.Config to Mode.Ready
Running model
o.run(steps=48*2, time_step=1800, time_step_output=1800)
17:16:53 DEBUG opendrift:101: Changed mode from Mode.Ready to Mode.Run
17:16:53 DEBUG opendrift:1704:
------------------------------------------------------
Software and hardware:
OpenDrift version 1.14.2
Platform: Linux, 6.8.0-1031-aws
4.0 GB memory
36 processors (x86_64)
NumPy version 2.3.0
SciPy version 1.15.2
Matplotlib version 3.10.3
NetCDF4 version 1.7.2
Xarray version 2025.6.1
ADIOS (adios_db) version 1.2.5
Copernicusmarine version 2.1.2
Python version 3.13.5 | packaged by conda-forge | (main, Jun 16 2025, 08:27:50) [GCC 13.3.0]
------------------------------------------------------
17:16:53 DEBUG opendrift:1717: No output file is specified, neglecting export_buffer_length
17:16:53 INFO opendrift:1743: Storing previous values of element property lon because of condition (('general:coastline_action', 'in', ['stranding', 'previous']), 'or', ('general:seafloor_action', 'in', ['previous']))
17:16:53 INFO opendrift:1743: Storing previous values of element property lat because of condition (('general:coastline_action', 'in', ['stranding', 'previous']), 'or', ('general:seafloor_action', 'in', ['previous']))
17:16:53 DEBUG opendrift:1866: Finalizing environment and preparing readers for simulation coverage ([ 4.69639997 54.43270917 16.51679392 60.76164202]) and time (2025-07-01 17:16:48.563089 to 2025-07-03 17:16:48.563089)
17:16:53 DEBUG opendrift.models.basemodel.environment:168: Preparing https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be for extent [ 4.69639997 54.43270917 16.51679392 60.76164202]
17:16:53 DEBUG opendrift.readers.basereader.structured:153: Clearing cache for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be before starting new simulation
17:16:53 DEBUG opendrift.readers.basereader.variables:614: Setting buffer size 11 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 2 m/s and time span of 1:00:00
17:16:53 DEBUG opendrift.readers.basereader.variables:555: Nothing more to prepare for https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:16:53 DEBUG opendrift.models.basemodel.environment:168: Preparing constant_reader for extent [ 4.69639997 54.43270917 16.51679392 60.76164202]
17:16:53 DEBUG opendrift.readers.basereader.variables:555: Nothing more to prepare for constant_reader
17:16:53 DEBUG opendrift.models.basemodel.environment:168: Preparing global_landmask for extent [ 4.69639997 54.43270917 16.51679392 60.76164202]
17:16:53 DEBUG opendrift.readers.basereader.variables:555: Nothing more to prepare for global_landmask
17:16:53 DEBUG opendrift:1953: Initial self.result, size Frozen({'trajectory': 500, 'time': 97})
17:16:53 INFO opendrift:899: Using existing reader for land_binary_mask
17:16:53 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:16:53 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:16:53 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:16:53 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:16:53 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:16:53 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:16:53 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:16:53 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:16:53 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:16:53 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:16:53 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:16:53 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:16:53 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:16:53 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:16:53 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:16:53 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:16:53 INFO opendrift:928: All points are in ocean
17:16:53 INFO opendrift.models.chemicaldrift:355: Number of species: 5
17:16:53 INFO opendrift.models.chemicaldrift:357: 0 LMM
17:16:53 INFO opendrift.models.chemicaldrift:357: 1 Humic colloid
17:16:53 INFO opendrift.models.chemicaldrift:357: 2 Particle reversible
17:16:53 INFO opendrift.models.chemicaldrift:357: 3 Sediment reversible
17:16:53 INFO opendrift.models.chemicaldrift:357: 4 Sediment slowly reversible
17:16:53 INFO opendrift.models.chemicaldrift:360: transfer setup: organics
17:16:53 INFO opendrift.models.chemicaldrift:362: nspecies: 5
17:16:53 INFO opendrift.models.chemicaldrift:363: Transfer rates:
[[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
0.00000000e+00]
[4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]
[9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]
[9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
3.16887646e-11]
[0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]]
17:16:53 DEBUG opendrift:856: to be seeded: 500, already seeded 0
17:16:53 DEBUG opendrift:878: Released 500 new elements.
17:16:53 DEBUG opendrift:2034: ======================================================================
17:16:53 INFO opendrift:2035: 2025-07-01 17:16:48.563089 - step 1 of 96 - 500 active elements (0 deactivated)
17:16:53 DEBUG opendrift:2041: 0 elements scheduled.
17:16:53 DEBUG opendrift:2043: ======================================================================
17:16:53 DEBUG opendrift:2054: 57.54622268676758 <- latitude -> 57.648128509521484
17:16:53 DEBUG opendrift:2054: 10.507113456726074 <- longitude -> 10.706080436706543
17:16:53 DEBUG opendrift:2054: -9.988470077514648 <- z -> -0.04695476219058037
17:16:53 DEBUG opendrift:2055: ---------------------------------
17:16:53 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:16:53 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:16:53 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:16:53 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:16:53 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:16:53 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:16:53 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:16:53 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-01 17:00:00 (before)
2025-07-01 18:00:00 (after)
17:16:57 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:16:57 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:16:57 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:16:57 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:16:57 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:16:57 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:16:57 DEBUG opendrift.readers.basereader.structured:292: Fetched env-block (size 37x35x7) for time before (2025-07-01 17:00:00)
17:16:58 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:16:58 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:16:58 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:16:58 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:16:58 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:16:58 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:16:58 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 37x35x7) for time after (2025-07-01 18:00:00)
17:16:58 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-01 17:00:00) in space (linearNDFast)
17:16:58 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:16:58 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-01 18:00:00) in space (linearNDFast)
17:16:58 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:16:58 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-01 17:00:00, weight 0.72) and
after (2025-07-01 18:00:00, weight 0.28) in time
17:16:58 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:16:58 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4929004930107 and -59.29392585004879 degrees.
17:16:59 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4929004930107 and -59.29392585004879 degrees.
17:16:59 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:16:59 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:16:59 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:16:59 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:16:59 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:16:59 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:16:59 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:16:59 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:16:59 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:16:59 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:16:59 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:16:59 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:16:59 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:16:59 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:16:59 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:16:59 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:16:59 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:16:59 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:16:59 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:16:59 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:16:59 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:16:59 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:16:59 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.109165 (min) 0.185932 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0706378 (min) 0.257814 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.249002 (min) -0.231585 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: x_wind: -2.88553 (min) -0.885182 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: y_wind: 6.8847 (min) 7.55196 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.53077 (min) 23.882 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.2095 (min) 16.4503 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4419 (min) 31.8406 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -1.21687e-05 (min) 0.000138356 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:16:59 DEBUG opendrift:685: No elements hit coastline.
17:16:59 DEBUG opendrift:714: No elements hit seafloor.
17:16:59 DEBUG opendrift:1636: No elements to deactivate
17:16:59 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:16:59 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:16:59 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:16:59 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:16:59 DEBUG opendrift.models.chemicaldrift:1476: old species: [2]
17:16:59 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
17:16:59 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[0. 0. 0. 0. 0.]
[0. 0. 0. 0. 0.]
[1. 0. 0. 0. 0.]
[0. 0. 0. 0. 0.]
[0. 0. 0. 0. 0.]]
17:16:59 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:16:59 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:16:59 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:16:59 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:16:59 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.045274955152208425
17:16:59 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:16:59 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:16:59 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:16:59 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 24 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 28 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 26 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 19 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 28 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 26 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 43 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 34 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 36 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 35 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 30 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 31 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 26 elements penetrated seafloor, lifting up
17:16:59 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:16:59 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:16:59 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:16:59 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:16:59 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(450), np.int64(0), np.int64(50), np.int64(0), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:16:59 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:16:59 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:16:59 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:16:59 DEBUG opendrift:2034: ======================================================================
17:16:59 INFO opendrift:2035: 2025-07-01 17:46:48.563089 - step 2 of 96 - 500 active elements (0 deactivated)
17:16:59 DEBUG opendrift:2041: 0 elements scheduled.
17:16:59 DEBUG opendrift:2043: ======================================================================
17:16:59 DEBUG opendrift:2054: 57.54994189103331 <- latitude -> 57.65057932098541
17:16:59 DEBUG opendrift:2054: 10.507278241069098 <- longitude -> 10.708991475879172
17:16:59 DEBUG opendrift:2054: -20.722072839298043 <- z -> 0.0
17:16:59 DEBUG opendrift:2055: ---------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:16:59 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:16:59 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:16:59 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:16:59 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-01 17:00:00 (before)
2025-07-01 18:00:00 (after)
17:16:59 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-01 17:00:00) in space (linearNDFast)
17:16:59 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:16:59 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-01 18:00:00) in space (linearNDFast)
17:16:59 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:16:59 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-01 17:00:00, weight 0.22) and
after (2025-07-01 18:00:00, weight 0.78) in time
17:16:59 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:16:59 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.49273285119066 and -59.29101958303329 degrees.
17:16:59 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.49273285119066 and -59.29101958303329 degrees.
17:16:59 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:16:59 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:16:59 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:16:59 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:16:59 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:16:59 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:16:59 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:16:59 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:16:59 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:16:59 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:16:59 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:16:59 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:16:59 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:16:59 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:16:59 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:16:59 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:16:59 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:16:59 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:16:59 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:16:59 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:16:59 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:16:59 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:16:59 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.141235 (min) 0.174488 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0494964 (min) 0.246365 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.207048 (min) -0.192195 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: x_wind: -2.70757 (min) -0.632268 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: y_wind: 6.61216 (min) 7.51034 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.43438 (min) 23.924 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1497 (min) 16.4554 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4847 (min) 31.9951 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -4.7602e-05 (min) 0.000155565 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:16:59 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:16:59 DEBUG opendrift:685: No elements hit coastline.
17:16:59 DEBUG opendrift:714: No elements hit seafloor.
17:16:59 DEBUG opendrift:1636: No elements to deactivate
17:16:59 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:16:59 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:16:59 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:16:59 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 21
17:16:59 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0]
17:16:59 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 0 3]
17:16:59 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 20. 0.]
[ 0. 0. 0. 0. 0.]
[ 2. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:16:59 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:16:59 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:16:59 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:16:59 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:16:59 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.04390493281030107
17:16:59 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:16:59 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:16:59 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:16:59 DEBUG opendrift.models.oceandrift:528: 13 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:548: 20 elements reached seafloor, interacting with bottom
17:16:59 DEBUG opendrift:719: Lifting 20 elements to seafloor.
17:16:59 DEBUG opendrift.models.oceandrift:528: 26 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 30 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 19 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 28 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 26 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 29 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 27 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 27 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 25 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 34 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 32 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 34 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 34 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 30 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 29 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 29 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:16:59 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:16:59 DEBUG opendrift.models.oceandrift:528: 34 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 35 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 31 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 30 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 32 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 30 elements penetrated seafloor, lifting up
17:16:59 DEBUG opendrift.models.oceandrift:528: 30 elements penetrated seafloor, lifting up
17:16:59 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:16:59 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:16:59 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:16:59 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:16:59 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(431), np.int64(0), np.int64(48), np.int64(21), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:16:59 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:16:59 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:16:59 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:16:59 DEBUG opendrift:2034: ======================================================================
17:16:59 INFO opendrift:2035: 2025-07-01 18:16:48.563089 - step 3 of 96 - 500 active elements (0 deactivated)
17:16:59 DEBUG opendrift:2041: 0 elements scheduled.
17:16:59 DEBUG opendrift:2043: ======================================================================
17:16:59 DEBUG opendrift:2054: 57.55145210873804 <- latitude -> 57.65271577756951
17:16:59 DEBUG opendrift:2054: 10.507639017691309 <- longitude -> 10.709805652757275
17:16:59 DEBUG opendrift:2054: -21.833769124260968 <- z -> 0.0
17:16:59 DEBUG opendrift:2055: ---------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:16:59 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:16:59 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:16:59 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:16:59 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:16:59 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-01 18:00:00 (before)
2025-07-01 19:00:00 (after)
17:17:01 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:01 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:01 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:01 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:01 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:01 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:01 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 38x35x7) for time after (2025-07-01 19:00:00)
17:17:01 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-01 18:00:00) in space (linearNDFast)
17:17:01 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:01 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-01 19:00:00) in space (linearNDFast)
17:17:01 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:01 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-01 18:00:00, weight 0.72) and
after (2025-07-01 19:00:00, weight 0.28) in time
17:17:01 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:01 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.49237207026977 and -59.29020541802762 degrees.
17:17:01 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.49237207026977 and -59.29020541802762 degrees.
17:17:01 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:01 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:01 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:01 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:01 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:01 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:01 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:01 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:01 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:01 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:01 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:01 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:01 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:01 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:01 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:01 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:01 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:01 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:01 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:01 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:01 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:01 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:01 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.147214 (min) 0.181392 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0558009 (min) 0.242198 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.170088 (min) -0.156753 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: x_wind: -2.61424 (min) -0.641183 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: y_wind: 6.37444 (min) 7.47533 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.33731 (min) 23.9136 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1494 (min) 16.457 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4638 (min) 32.0189 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -4.25555e-05 (min) 0.000178627 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:01 DEBUG opendrift:685: No elements hit coastline.
17:17:01 DEBUG opendrift:714: No elements hit seafloor.
17:17:01 DEBUG opendrift:1636: No elements to deactivate
17:17:01 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:01 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:01 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:01 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 22
17:17:01 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0]
17:17:01 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 0 3 3 3 3 3 3 3]
17:17:01 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 41. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 1. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:01 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:01 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:01 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:01 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:01 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.04310914646908411
17:17:01 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:01 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:01 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:01 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:548: 21 elements reached seafloor, interacting with bottom
17:17:01 DEBUG opendrift:719: Lifting 21 elements to seafloor.
17:17:01 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 36 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 24 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 29 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 30 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 30 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 29 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 24 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 25 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:01 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:01 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 24 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 31 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:01 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:01 DEBUG opendrift.models.oceandrift:528: 24 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:01 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:01 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:01 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:01 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:01 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(411), np.int64(0), np.int64(45), np.int64(44), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:01 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:01 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:01 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:01 DEBUG opendrift:2034: ======================================================================
17:17:01 INFO opendrift:2035: 2025-07-01 18:46:48.563089 - step 4 of 96 - 500 active elements (0 deactivated)
17:17:01 DEBUG opendrift:2041: 0 elements scheduled.
17:17:01 DEBUG opendrift:2043: ======================================================================
17:17:01 DEBUG opendrift:2054: 57.553982810190114 <- latitude -> 57.65487820855411
17:17:01 DEBUG opendrift:2054: 10.508103207789798 <- longitude -> 10.709380082197374
17:17:01 DEBUG opendrift:2054: -21.762758255004883 <- z -> 0.0
17:17:01 DEBUG opendrift:2055: ---------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:01 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:01 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:01 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:01 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-01 18:00:00 (before)
2025-07-01 19:00:00 (after)
17:17:01 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-01 18:00:00) in space (linearNDFast)
17:17:01 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:01 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-01 19:00:00) in space (linearNDFast)
17:17:01 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:01 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-01 18:00:00, weight 0.22) and
after (2025-07-01 19:00:00, weight 0.78) in time
17:17:01 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:01 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.49190788348837 and -59.290630969179894 degrees.
17:17:01 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.49190788348837 and -59.290630969179894 degrees.
17:17:01 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:01 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:01 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:01 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:01 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:01 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:01 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:01 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:01 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:01 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:01 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:01 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:01 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:01 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:01 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:01 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:01 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:01 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:01 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:01 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:01 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:01 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:01 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.13466 (min) 0.171415 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.041836 (min) 0.250157 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.136286 (min) -0.124274 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: x_wind: -2.60388 (min) -0.827598 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: y_wind: 6.14096 (min) 7.34276 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.23207 (min) 23.8376 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1515 (min) 16.391 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4931 (min) 31.9986 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -5.21607e-05 (min) 0.000179988 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:01 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:01 DEBUG opendrift:685: No elements hit coastline.
17:17:01 DEBUG opendrift:714: No elements hit seafloor.
17:17:01 DEBUG opendrift:1636: No elements to deactivate
17:17:01 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:01 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:01 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:01 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 15
17:17:01 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
17:17:01 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
17:17:01 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 56. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 3. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:01 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:01 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:01 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:01 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:01 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.04184053299324561
17:17:01 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:01 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:01 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:01 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:548: 15 elements reached seafloor, interacting with bottom
17:17:01 DEBUG opendrift:719: Lifting 15 elements to seafloor.
17:17:01 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 32 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 28 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 25 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 32 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 27 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 19 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:01 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:01 DEBUG opendrift.models.oceandrift:528: 31 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 26 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 25 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:01 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:01 DEBUG opendrift.models.oceandrift:528: 30 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:548: 2 elements reached seafloor, interacting with bottom
17:17:01 DEBUG opendrift:719: Lifting 2 elements to seafloor.
17:17:01 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:01 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:01 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 29 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:01 DEBUG opendrift.models.oceandrift:528: 26 elements penetrated seafloor, lifting up
17:17:01 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:01 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:01 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:01 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:01 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(396), np.int64(0), np.int64(40), np.int64(64), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:01 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:01 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:01 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:01 DEBUG opendrift:2034: ======================================================================
17:17:01 INFO opendrift:2035: 2025-07-01 19:16:48.563089 - step 5 of 96 - 500 active elements (0 deactivated)
17:17:01 DEBUG opendrift:2041: 0 elements scheduled.
17:17:01 DEBUG opendrift:2043: ======================================================================
17:17:01 DEBUG opendrift:2054: 57.55511503303176 <- latitude -> 57.65672763335298
17:17:01 DEBUG opendrift:2054: 10.508956881715402 <- longitude -> 10.710637672032714
17:17:01 DEBUG opendrift:2054: -21.79355402675299 <- z -> -0.00532578931652683
17:17:01 DEBUG opendrift:2055: ---------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:01 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:01 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:01 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:01 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:01 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-01 19:00:00 (before)
2025-07-01 20:00:00 (after)
17:17:03 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:03 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:03 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:03 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:03 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:03 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:03 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 37x36x7) for time after (2025-07-01 20:00:00)
17:17:03 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-01 19:00:00) in space (linearNDFast)
17:17:03 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:03 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-01 20:00:00) in space (linearNDFast)
17:17:03 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:03 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-01 19:00:00, weight 0.72) and
after (2025-07-01 20:00:00, weight 0.28) in time
17:17:03 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:03 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.49105421524225 and -59.28937338329129 degrees.
17:17:03 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.49105421524225 and -59.28937338329129 degrees.
17:17:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:03 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:03 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:03 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:03 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:03 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:03 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:03 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:03 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:03 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:03 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:03 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:03 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.130545 (min) 0.165203 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0673477 (min) 0.254062 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.114882 (min) -0.101641 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: x_wind: -2.58816 (min) -1.04045 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: y_wind: 6.27715 (min) 7.34197 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.15879 (min) 23.8483 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1607 (min) 16.367 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.507 (min) 32.0026 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -4.82191e-05 (min) 0.00016796 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:03 DEBUG opendrift:685: No elements hit coastline.
17:17:03 DEBUG opendrift:719: Lifting 2 elements to seafloor.
17:17:03 DEBUG opendrift:1636: No elements to deactivate
17:17:03 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:03 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:03 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:03 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 23
17:17:03 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
17:17:03 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
17:17:03 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 79. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 8. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:03 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:03 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:03 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:03 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:03 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.04204081938723503
17:17:03 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:03 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:03 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:03 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:548: 23 elements reached seafloor, interacting with bottom
17:17:03 DEBUG opendrift:719: Lifting 23 elements to seafloor.
17:17:03 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:03 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:03 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 19 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 26 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 24 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 24 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 27 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 26 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:03 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:03 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:03 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:03 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:03 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(373), np.int64(0), np.int64(39), np.int64(88), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:03 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:03 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:03 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:03 DEBUG opendrift:2034: ======================================================================
17:17:03 INFO opendrift:2035: 2025-07-01 19:46:48.563089 - step 6 of 96 - 500 active elements (0 deactivated)
17:17:03 DEBUG opendrift:2041: 0 elements scheduled.
17:17:03 DEBUG opendrift:2043: ======================================================================
17:17:03 DEBUG opendrift:2054: 57.55705466562643 <- latitude -> 57.658403946897934
17:17:03 DEBUG opendrift:2054: 10.510122513856565 <- longitude -> 10.710487144093742
17:17:03 DEBUG opendrift:2054: -22.15399932861328 <- z -> -0.03472258426979824
17:17:03 DEBUG opendrift:2055: ---------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:03 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:03 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-01 19:00:00 (before)
2025-07-01 20:00:00 (after)
17:17:03 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-01 19:00:00) in space (linearNDFast)
17:17:03 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:03 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-01 20:00:00) in space (linearNDFast)
17:17:03 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:03 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-01 19:00:00, weight 0.22) and
after (2025-07-01 20:00:00, weight 0.78) in time
17:17:03 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:03 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.489888562567685 and -59.28952392072361 degrees.
17:17:03 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.489888562567685 and -59.28952392072361 degrees.
17:17:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:03 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:03 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:03 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:03 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:03 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:03 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:03 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:03 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:03 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:03 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:03 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:03 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.128498 (min) 0.167204 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0590022 (min) 0.256591 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.102729 (min) -0.0866426 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: x_wind: -2.58721 (min) -1.26779 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: y_wind: 6.73307 (min) 7.4438 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.1054 (min) 23.7629 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1544 (min) 16.4032 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4964 (min) 32.0122 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -5.03421e-05 (min) 0.000160382 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:03 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:03 DEBUG opendrift:685: No elements hit coastline.
17:17:03 DEBUG opendrift:714: No elements hit seafloor.
17:17:03 DEBUG opendrift:1636: No elements to deactivate
17:17:03 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:03 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:03 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:03 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 21
17:17:03 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
17:17:03 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
17:17:03 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 100. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 9. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:03 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:03 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:03 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:03 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:03 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.04373128371942018
17:17:03 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:03 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:03 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:03 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:548: 21 elements reached seafloor, interacting with bottom
17:17:03 DEBUG opendrift:719: Lifting 21 elements to seafloor.
17:17:03 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 25 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:03 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:03 DEBUG opendrift.models.oceandrift:528: 28 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 24 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 24 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:03 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:03 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 19 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 19 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 19 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 26 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 25 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 24 elements penetrated seafloor, lifting up
17:17:03 DEBUG opendrift.models.oceandrift:528: 28 elements penetrated seafloor, lifting up
17:17:03 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:03 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:03 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:03 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:03 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(352), np.int64(0), np.int64(37), np.int64(111), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:03 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:03 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:03 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:03 DEBUG opendrift:2034: ======================================================================
17:17:03 INFO opendrift:2035: 2025-07-01 20:16:48.563089 - step 7 of 96 - 500 active elements (0 deactivated)
17:17:03 DEBUG opendrift:2041: 0 elements scheduled.
17:17:03 DEBUG opendrift:2043: ======================================================================
17:17:03 DEBUG opendrift:2054: 57.558383601653404 <- latitude -> 57.660617561060995
17:17:03 DEBUG opendrift:2054: 10.511645187342344 <- longitude -> 10.714266798156444
17:17:03 DEBUG opendrift:2054: -22.15399932861328 <- z -> 0.0
17:17:03 DEBUG opendrift:2055: ---------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:03 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:03 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-01 20:00:00 (before)
2025-07-01 21:00:00 (after)
17:17:05 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:05 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:05 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:05 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:05 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:05 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:05 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 38x36x7) for time after (2025-07-01 21:00:00)
17:17:05 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-01 20:00:00) in space (linearNDFast)
17:17:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:05 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-01 21:00:00) in space (linearNDFast)
17:17:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:05 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-01 20:00:00, weight 0.72) and
after (2025-07-01 21:00:00, weight 0.28) in time
17:17:05 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48836589540461 and -59.285744263526 degrees.
17:17:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48836589540461 and -59.285744263526 degrees.
17:17:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:05 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:05 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:05 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:05 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:05 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:05 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:05 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:05 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.126136 (min) 0.163467 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0598342 (min) 0.267202 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.101565 (min) -0.0833598 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: x_wind: -2.47375 (min) -1.38224 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: y_wind: 6.94989 (min) 7.48956 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.06808 (min) 23.8449 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.157 (min) 16.4279 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4957 (min) 32.0144 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -6.46184e-05 (min) 0.000152181 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:05 DEBUG opendrift:685: No elements hit coastline.
17:17:05 DEBUG opendrift:714: No elements hit seafloor.
17:17:05 DEBUG opendrift:1636: No elements to deactivate
17:17:05 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:05 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:05 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:05 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 18
17:17:05 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
17:17:05 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
17:17:05 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 118. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 11. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:05 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:05 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:05 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:05 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:05 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.04409685908053158
17:17:05 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:05 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:05 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:05 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:548: 18 elements reached seafloor, interacting with bottom
17:17:05 DEBUG opendrift:719: Lifting 18 elements to seafloor.
17:17:05 DEBUG opendrift.models.oceandrift:528: 13 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 11 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:05 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:05 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 19 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 19 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 25 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 24 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:05 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:05 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:05 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:05 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:05 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(334), np.int64(0), np.int64(36), np.int64(130), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:05 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:05 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:05 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:05 DEBUG opendrift:2034: ======================================================================
17:17:05 INFO opendrift:2035: 2025-07-01 20:46:48.563089 - step 8 of 96 - 500 active elements (0 deactivated)
17:17:05 DEBUG opendrift:2041: 0 elements scheduled.
17:17:05 DEBUG opendrift:2043: ======================================================================
17:17:05 DEBUG opendrift:2054: 57.55898804738502 <- latitude -> 57.66313323681057
17:17:05 DEBUG opendrift:2054: 10.511967461476395 <- longitude -> 10.715633903460551
17:17:05 DEBUG opendrift:2054: -22.15399932861328 <- z -> -0.06722065661580989
17:17:05 DEBUG opendrift:2055: ---------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:05 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:05 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-01 20:00:00 (before)
2025-07-01 21:00:00 (after)
17:17:05 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-01 20:00:00) in space (linearNDFast)
17:17:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:05 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-01 21:00:00) in space (linearNDFast)
17:17:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:05 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-01 20:00:00, weight 0.22) and
after (2025-07-01 21:00:00, weight 0.78) in time
17:17:05 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.284377158975666 degrees.
17:17:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.284377158975666 degrees.
17:17:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:05 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:05 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:05 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:05 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:05 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:05 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:05 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:05 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.123526 (min) 0.166327 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0709965 (min) 0.268953 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.108921 (min) -0.0894888 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: x_wind: -2.2634 (min) -1.49885 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: y_wind: 6.8269 (min) 7.5147 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.01928 (min) 23.8392 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1594 (min) 16.3494 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4559 (min) 32.0183 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -6.23182e-05 (min) 0.000143492 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:05 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:05 DEBUG opendrift:685: No elements hit coastline.
17:17:05 DEBUG opendrift:719: Lifting 42 elements to seafloor.
17:17:05 DEBUG opendrift:1636: No elements to deactivate
17:17:05 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:05 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:05 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:05 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 16
17:17:05 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0]
17:17:05 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 0 3 3 3 3 3 3 3 3 3 3 3]
17:17:05 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 133. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 12. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:05 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:05 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:05 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:05 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:05 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.04357775117633418
17:17:05 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:05 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:05 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:05 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:548: 15 elements reached seafloor, interacting with bottom
17:17:05 DEBUG opendrift:719: Lifting 15 elements to seafloor.
17:17:05 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 13 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 19 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 13 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:05 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:05 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:05 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:05 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:05 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:05 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:05 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:05 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(320), np.int64(0), np.int64(35), np.int64(145), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:05 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:05 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:05 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:05 DEBUG opendrift:2034: ======================================================================
17:17:05 INFO opendrift:2035: 2025-07-01 21:16:48.563089 - step 9 of 96 - 500 active elements (0 deactivated)
17:17:05 DEBUG opendrift:2041: 0 elements scheduled.
17:17:05 DEBUG opendrift:2043: ======================================================================
17:17:05 DEBUG opendrift:2054: 57.558988047385014 <- latitude -> 57.66533767561106
17:17:05 DEBUG opendrift:2054: 10.511967461476395 <- longitude -> 10.717374385189194
17:17:05 DEBUG opendrift:2054: -22.15399932861328 <- z -> -0.15609518385974464
17:17:05 DEBUG opendrift:2055: ---------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:05 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:05 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-01 21:00:00 (before)
2025-07-01 22:00:00 (after)
17:17:07 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:07 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:07 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:07 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:07 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:07 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:07 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 39x36x7) for time after (2025-07-01 22:00:00)
17:17:07 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-01 21:00:00) in space (linearNDFast)
17:17:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:07 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-01 22:00:00) in space (linearNDFast)
17:17:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:07 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-01 21:00:00, weight 0.72) and
after (2025-07-01 22:00:00, weight 0.28) in time
17:17:07 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.282636671678766 degrees.
17:17:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.282636671678766 degrees.
17:17:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:07 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:07 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:07 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:07 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:07 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:07 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:07 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:07 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.121048 (min) 0.172464 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0851227 (min) 0.275191 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.123132 (min) -0.102513 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: x_wind: -1.80585 (min) -1.22978 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: y_wind: 6.36927 (min) 7.29348 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.01967 (min) 23.8361 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1576 (min) 16.3451 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4972 (min) 32.0225 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -7.83348e-05 (min) 0.000136098 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:07 DEBUG opendrift:685: No elements hit coastline.
17:17:07 DEBUG opendrift:719: Lifting 82 elements to seafloor.
17:17:07 DEBUG opendrift:1636: No elements to deactivate
17:17:07 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:07 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:07 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:07 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 13
17:17:07 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0]
17:17:07 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3]
17:17:07 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 146. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 13. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:07 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:07 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:07 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:07 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:07 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.03997976997450694
17:17:07 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:07 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:07 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:07 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:548: 13 elements reached seafloor, interacting with bottom
17:17:07 DEBUG opendrift:719: Lifting 13 elements to seafloor.
17:17:07 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 11 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 21 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 22 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 19 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 20 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 24 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 26 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 25 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 19 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 13 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:07 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:07 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 23 elements penetrated seafloor, lifting up
17:17:07 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:07 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:07 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:07 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:07 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(307), np.int64(0), np.int64(34), np.int64(159), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:07 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:07 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:07 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:07 DEBUG opendrift:2034: ======================================================================
17:17:07 INFO opendrift:2035: 2025-07-01 21:46:48.563089 - step 10 of 96 - 500 active elements (0 deactivated)
17:17:07 DEBUG opendrift:2041: 0 elements scheduled.
17:17:07 DEBUG opendrift:2043: ======================================================================
17:17:07 DEBUG opendrift:2054: 57.558988047385014 <- latitude -> 57.66774235696947
17:17:07 DEBUG opendrift:2054: 10.511967461476395 <- longitude -> 10.718379733862504
17:17:07 DEBUG opendrift:2054: -22.15178871154785 <- z -> -0.059187911431664686
17:17:07 DEBUG opendrift:2055: ---------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:07 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:07 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-01 21:00:00 (before)
2025-07-01 22:00:00 (after)
17:17:07 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-01 21:00:00) in space (linearNDFast)
17:17:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:07 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-01 22:00:00) in space (linearNDFast)
17:17:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:07 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-01 21:00:00, weight 0.22) and
after (2025-07-01 22:00:00, weight 0.78) in time
17:17:07 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.28163131552979 degrees.
17:17:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.28163131552979 degrees.
17:17:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:07 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:07 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:07 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:07 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:07 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:07 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:07 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:07 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.118673 (min) 0.174881 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.110352 (min) 0.277009 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.142913 (min) -0.120959 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: x_wind: -1.16535 (min) -0.644282 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: y_wind: 5.67918 (min) 6.93674 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.03805 (min) 23.7914 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1544 (min) 16.3878 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5179 (min) 32.0269 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -6.482e-05 (min) 0.000129719 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:07 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:07 DEBUG opendrift:685: No elements hit coastline.
17:17:07 DEBUG opendrift:719: Lifting 114 elements to seafloor.
17:17:07 DEBUG opendrift:1636: No elements to deactivate
17:17:07 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:07 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:07 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:07 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 18
17:17:07 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
17:17:07 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
17:17:07 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 164. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 14. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:07 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:07 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:07 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:07 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:07 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.03533295687807585
17:17:07 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:07 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:07 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:07 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:548: 18 elements reached seafloor, interacting with bottom
17:17:07 DEBUG opendrift:719: Lifting 18 elements to seafloor.
17:17:07 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 11 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:07 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:07 DEBUG opendrift.models.oceandrift:528: 11 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 19 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 11 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 24 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 25 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 11 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 13 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:07 DEBUG opendrift.models.oceandrift:528: 13 elements penetrated seafloor, lifting up
17:17:07 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:07 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:07 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:07 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:07 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(289), np.int64(0), np.int64(33), np.int64(178), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:07 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:07 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:07 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:07 DEBUG opendrift:2034: ======================================================================
17:17:07 INFO opendrift:2035: 2025-07-01 22:16:48.563089 - step 11 of 96 - 500 active elements (0 deactivated)
17:17:07 DEBUG opendrift:2041: 0 elements scheduled.
17:17:07 DEBUG opendrift:2043: ======================================================================
17:17:07 DEBUG opendrift:2054: 57.558988047385014 <- latitude -> 57.67102417837828
17:17:07 DEBUG opendrift:2054: 10.511967461476395 <- longitude -> 10.721456036145426
17:17:07 DEBUG opendrift:2054: -22.143510717447707 <- z -> -0.0735980960652537
17:17:07 DEBUG opendrift:2055: ---------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:07 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:07 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-01 22:00:00 (before)
2025-07-01 23:00:00 (after)
17:17:09 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:09 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:09 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:09 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:09 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:09 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:09 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 40x36x7) for time after (2025-07-01 23:00:00)
17:17:09 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-01 22:00:00) in space (linearNDFast)
17:17:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:09 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-01 23:00:00) in space (linearNDFast)
17:17:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:09 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-01 22:00:00, weight 0.72) and
after (2025-07-01 23:00:00, weight 0.28) in time
17:17:09 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.2785550149776 degrees.
17:17:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.2785550149776 degrees.
17:17:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:09 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:09 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:09 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:09 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:09 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:09 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:09 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:09 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.117098 (min) 0.18209 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0938585 (min) 0.273177 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.166824 (min) -0.14345 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: x_wind: -0.927997 (min) -0.441625 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: y_wind: 5.20462 (min) 6.91014 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.09548 (min) 23.7979 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1529 (min) 16.3869 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5129 (min) 32.0308 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -6.73118e-05 (min) 0.000124815 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:09 DEBUG opendrift:685: No elements hit coastline.
17:17:09 DEBUG opendrift:719: Lifting 134 elements to seafloor.
17:17:09 DEBUG opendrift:1636: No elements to deactivate
17:17:09 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:09 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:09 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:09 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 15
17:17:09 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
17:17:09 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
17:17:09 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 179. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 15. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:09 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:09 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:09 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:09 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:09 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.0347693934509172
17:17:09 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:09 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:09 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:09 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:548: 15 elements reached seafloor, interacting with bottom
17:17:09 DEBUG opendrift:719: Lifting 15 elements to seafloor.
17:17:09 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 11 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 13 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 13 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 13 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 13 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:09 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:09 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 13 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:09 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:09 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:09 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:09 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:09 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(274), np.int64(0), np.int64(32), np.int64(194), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:09 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:09 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:09 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:09 DEBUG opendrift:2034: ======================================================================
17:17:09 INFO opendrift:2035: 2025-07-01 22:46:48.563089 - step 12 of 96 - 500 active elements (0 deactivated)
17:17:09 DEBUG opendrift:2041: 0 elements scheduled.
17:17:09 DEBUG opendrift:2043: ======================================================================
17:17:09 DEBUG opendrift:2054: 57.558988047385014 <- latitude -> 57.67415068755304
17:17:09 DEBUG opendrift:2054: 10.511967461476395 <- longitude -> 10.72325051922127
17:17:09 DEBUG opendrift:2054: -22.274925231933594 <- z -> -0.1606236483786465
17:17:09 DEBUG opendrift:2055: ---------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:09 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:09 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-01 22:00:00 (before)
2025-07-01 23:00:00 (after)
17:17:09 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-01 22:00:00) in space (linearNDFast)
17:17:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:09 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-01 23:00:00) in space (linearNDFast)
17:17:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:09 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-01 22:00:00, weight 0.22) and
after (2025-07-01 23:00:00, weight 0.78) in time
17:17:09 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.27676053060178 degrees.
17:17:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.27676053060178 degrees.
17:17:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:09 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:09 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:09 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:09 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:09 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:09 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:09 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:09 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.116152 (min) 0.187607 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.125283 (min) 0.280488 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.19386 (min) -0.169753 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: x_wind: -0.983284 (min) -0.410224 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: y_wind: 4.89919 (min) 7.0327 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.18894 (min) 23.7732 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1529 (min) 16.3157 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5038 (min) 32.0343 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -8.1776e-05 (min) 0.000121069 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:09 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:09 DEBUG opendrift:685: No elements hit coastline.
17:17:09 DEBUG opendrift:719: Lifting 173 elements to seafloor.
17:17:09 DEBUG opendrift:1636: No elements to deactivate
17:17:09 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:09 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:09 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:09 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 10
17:17:09 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 2 0 0 0 2 0 0 2]
17:17:09 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 0 3 3 3 0 3 3 0]
17:17:09 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 186. 0.]
[ 0. 0. 0. 0. 0.]
[ 6. 0. 0. 16. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:09 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:09 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:09 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:09 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:09 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.035887383480788515
17:17:09 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:09 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:09 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:09 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:548: 7 elements reached seafloor, interacting with bottom
17:17:09 DEBUG opendrift:719: Lifting 7 elements to seafloor.
17:17:09 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 11 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 13 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 19 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 11 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 13 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 18 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 14 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 11 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 16 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 11 elements penetrated seafloor, lifting up
17:17:09 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:09 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:09 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:09 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:09 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:09 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(270), np.int64(0), np.int64(29), np.int64(201), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:09 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:09 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:09 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:09 DEBUG opendrift:2034: ======================================================================
17:17:09 INFO opendrift:2035: 2025-07-01 23:16:48.563089 - step 13 of 96 - 500 active elements (0 deactivated)
17:17:09 DEBUG opendrift:2041: 0 elements scheduled.
17:17:09 DEBUG opendrift:2043: ======================================================================
17:17:09 DEBUG opendrift:2054: 57.55898804738502 <- latitude -> 57.676831179838146
17:17:09 DEBUG opendrift:2054: 10.511967461476395 <- longitude -> 10.725054983824887
17:17:09 DEBUG opendrift:2054: -22.24892807006836 <- z -> -0.09035003239556394
17:17:09 DEBUG opendrift:2055: ---------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:09 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:09 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-01 23:00:00 (before)
2025-07-02 00:00:00 (after)
17:17:12 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:12 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:12 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:12 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:12 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:12 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:12 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 41x36x7) for time after (2025-07-02 00:00:00)
17:17:12 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-01 23:00:00) in space (linearNDFast)
17:17:12 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:12 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 00:00:00) in space (linearNDFast)
17:17:12 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:12 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-01 23:00:00, weight 0.72) and
after (2025-07-02 00:00:00, weight 0.28) in time
17:17:12 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:12 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.27495607156548 degrees.
17:17:12 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.27495607156548 degrees.
17:17:12 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:12 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:12 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:12 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:12 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:12 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:12 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:12 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:12 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:12 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:12 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:12 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:12 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:12 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:12 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:12 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:12 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:12 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:12 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:12 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:12 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:12 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:12 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.114712 (min) 0.19207 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.132692 (min) 0.273829 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.22381 (min) -0.198382 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: x_wind: -0.610082 (min) -0.0550821 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: y_wind: 4.02649 (min) 6.29542 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.3158 (min) 23.6907 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1529 (min) 16.3684 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5323 (min) 32.0372 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -8.28848e-05 (min) 0.000117444 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:12 DEBUG opendrift:685: No elements hit coastline.
17:17:12 DEBUG opendrift:719: Lifting 203 elements to seafloor.
17:17:12 DEBUG opendrift:1636: No elements to deactivate
17:17:12 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:12 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:12 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:12 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 15
17:17:12 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 2]
17:17:12 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 0]
17:17:12 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 200. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 16. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:12 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:12 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:12 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:12 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:12 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.028652829644360084
17:17:12 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:12 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:12 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:12 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:548: 14 elements reached seafloor, interacting with bottom
17:17:12 DEBUG opendrift:719: Lifting 14 elements to seafloor.
17:17:12 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 17 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 11 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:12 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:12 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 11 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 15 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 13 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:12 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:12 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:12 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:12 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:12 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(257), np.int64(0), np.int64(27), np.int64(216), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:12 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:12 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:12 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:12 DEBUG opendrift:2034: ======================================================================
17:17:12 INFO opendrift:2035: 2025-07-01 23:46:48.563089 - step 14 of 96 - 500 active elements (0 deactivated)
17:17:12 DEBUG opendrift:2041: 0 elements scheduled.
17:17:12 DEBUG opendrift:2043: ======================================================================
17:17:12 DEBUG opendrift:2054: 57.55898804738502 <- latitude -> 57.68023843189858
17:17:12 DEBUG opendrift:2054: 10.511967461476395 <- longitude -> 10.7285597873491
17:17:12 DEBUG opendrift:2054: -22.220684051513672 <- z -> -0.07313638722847327
17:17:12 DEBUG opendrift:2055: ---------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:12 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:12 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:12 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:12 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-01 23:00:00 (before)
2025-07-02 00:00:00 (after)
17:17:12 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-01 23:00:00) in space (linearNDFast)
17:17:12 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:12 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 00:00:00) in space (linearNDFast)
17:17:12 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:12 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-01 23:00:00, weight 0.22) and
after (2025-07-02 00:00:00, weight 0.78) in time
17:17:12 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:12 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.271451261145884 degrees.
17:17:12 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.271451261145884 degrees.
17:17:12 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:12 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:12 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:12 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:12 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:12 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:12 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:12 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:12 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:12 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:12 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:12 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:12 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:12 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:12 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:12 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:12 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:12 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:12 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:12 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:12 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:12 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:12 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:12 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.112885 (min) 0.20335 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.141018 (min) 0.286833 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.255758 (min) -0.228615 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.0556009 (min) 0.497567 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.70867 (min) 4.90353 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.47949 (min) 23.6211 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1529 (min) 16.3641 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5081 (min) 32.0397 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -9.87069e-05 (min) 0.000117061 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:12 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:12 DEBUG opendrift:685: No elements hit coastline.
17:17:12 DEBUG opendrift:719: Lifting 217 elements to seafloor.
17:17:12 DEBUG opendrift:1636: No elements to deactivate
17:17:12 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:12 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:12 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:12 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 6
17:17:12 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0]
17:17:12 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3]
17:17:12 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 206. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 17. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:12 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:12 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:12 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:12 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:12 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.017429820692286203
17:17:12 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:12 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:12 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:12 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:548: 6 elements reached seafloor, interacting with bottom
17:17:12 DEBUG opendrift:719: Lifting 6 elements to seafloor.
17:17:12 DEBUG opendrift.models.oceandrift:528: 11 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:12 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 12 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:13 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:13 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:13 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:13 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:13 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:13 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(251), np.int64(0), np.int64(27), np.int64(222), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:13 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:13 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:13 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:13 DEBUG opendrift:2034: ======================================================================
17:17:13 INFO opendrift:2035: 2025-07-02 00:16:48.563089 - step 15 of 96 - 500 active elements (0 deactivated)
17:17:13 DEBUG opendrift:2041: 0 elements scheduled.
17:17:13 DEBUG opendrift:2043: ======================================================================
17:17:13 DEBUG opendrift:2054: 57.55898804738502 <- latitude -> 57.68371274964328
17:17:13 DEBUG opendrift:2054: 10.511967461476395 <- longitude -> 10.732314422247907
17:17:13 DEBUG opendrift:2054: -22.519624994068472 <- z -> -0.08721458295805751
17:17:13 DEBUG opendrift:2055: ---------------------------------
17:17:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:13 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:13 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 00:00:00 (before)
2025-07-02 01:00:00 (after)
17:17:14 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:14 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:14 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:14 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:14 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:14 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:14 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 42x35x7) for time after (2025-07-02 01:00:00)
17:17:14 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 00:00:00) in space (linearNDFast)
17:17:14 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:15 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 01:00:00) in space (linearNDFast)
17:17:15 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:15 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 00:00:00, weight 0.72) and
after (2025-07-02 01:00:00, weight 0.28) in time
17:17:15 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:15 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.26769662140119 degrees.
17:17:15 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.26769662140119 degrees.
17:17:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:15 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:15 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:15 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:15 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:15 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:15 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:15 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:15 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:15 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:15 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:15 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:15 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.113935 (min) 0.213216 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.148449 (min) 0.285112 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.287605 (min) -0.258705 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.391176 (min) 1.05512 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.98859 (min) 4.19131 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.69667 (min) 23.5463 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1529 (min) 16.3566 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5135 (min) 32.0418 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000111568 (min) 0.000118435 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:15 DEBUG opendrift:685: No elements hit coastline.
17:17:15 DEBUG opendrift:719: Lifting 222 elements to seafloor.
17:17:15 DEBUG opendrift:1636: No elements to deactivate
17:17:15 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:15 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:15 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:15 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 9
17:17:15 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0]
17:17:15 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3]
17:17:15 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 215. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 17. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:15 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:15 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:15 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:15 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:15 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.012937815516773839
17:17:15 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:15 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:15 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:548: 9 elements reached seafloor, interacting with bottom
17:17:15 DEBUG opendrift:719: Lifting 9 elements to seafloor.
17:17:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 11 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 10 elements penetrated seafloor, lifting up
17:17:15 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:15 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:15 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:15 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:15 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(242), np.int64(0), np.int64(27), np.int64(231), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:15 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:15 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:15 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:15 DEBUG opendrift:2034: ======================================================================
17:17:15 INFO opendrift:2035: 2025-07-02 00:46:48.563089 - step 16 of 96 - 500 active elements (0 deactivated)
17:17:15 DEBUG opendrift:2041: 0 elements scheduled.
17:17:15 DEBUG opendrift:2043: ======================================================================
17:17:15 DEBUG opendrift:2054: 57.55898804738502 <- latitude -> 57.687274677965966
17:17:15 DEBUG opendrift:2054: 10.511967461476393 <- longitude -> 10.735811394120777
17:17:15 DEBUG opendrift:2054: -22.16116714477539 <- z -> -0.2668483153562946
17:17:15 DEBUG opendrift:2055: ---------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:15 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:15 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 00:00:00 (before)
2025-07-02 01:00:00 (after)
17:17:15 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 00:00:00) in space (linearNDFast)
17:17:15 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:15 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 01:00:00) in space (linearNDFast)
17:17:15 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:15 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 00:00:00, weight 0.22) and
after (2025-07-02 01:00:00, weight 0.78) in time
17:17:15 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:15 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.26419965089795 degrees.
17:17:15 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.26419965089795 degrees.
17:17:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:15 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:15 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:15 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:15 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:15 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:15 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:15 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:15 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:15 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:15 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:15 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:15 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.117244 (min) 0.224893 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.155177 (min) 0.285815 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.319105 (min) -0.287574 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.46771 (min) 1.56536 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.72937 (min) 3.99979 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 23.4966 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1529 (min) 16.3117 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5103 (min) 32.0457 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000107363 (min) 0.000121188 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:15 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:15 DEBUG opendrift:685: No elements hit coastline.
17:17:15 DEBUG opendrift:719: Lifting 232 elements to seafloor.
17:17:15 DEBUG opendrift:1636: No elements to deactivate
17:17:15 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:15 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:15 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:15 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 16
17:17:15 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0]
17:17:15 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 0 3 3 3 3 3 3 3 3 3 3 3]
17:17:15 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 230. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 17. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:15 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:15 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:15 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:15 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:15 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.012064863079682929
17:17:15 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:15 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:15 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:548: 15 elements reached seafloor, interacting with bottom
17:17:15 DEBUG opendrift:719: Lifting 15 elements to seafloor.
17:17:15 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:15 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:15 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:15 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:15 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:15 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:15 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:15 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:15 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:15 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:15 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:15 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:15 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(228), np.int64(0), np.int64(23), np.int64(249), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:15 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:15 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:15 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:15 DEBUG opendrift:2034: ======================================================================
17:17:15 INFO opendrift:2035: 2025-07-02 01:16:48.563089 - step 17 of 96 - 500 active elements (0 deactivated)
17:17:15 DEBUG opendrift:2041: 0 elements scheduled.
17:17:15 DEBUG opendrift:2043: ======================================================================
17:17:15 DEBUG opendrift:2054: 57.55898804738502 <- latitude -> 57.69041118376335
17:17:15 DEBUG opendrift:2054: 10.511967461476393 <- longitude -> 10.73960830132863
17:17:15 DEBUG opendrift:2054: -22.654586791992188 <- z -> -0.2944765545073068
17:17:15 DEBUG opendrift:2055: ---------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:15 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:15 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 01:00:00 (before)
2025-07-02 02:00:00 (after)
17:17:17 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:17 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:17 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:17 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:17 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:17 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:17 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 44x35x7) for time after (2025-07-02 02:00:00)
17:17:17 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 01:00:00) in space (linearNDFast)
17:17:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:17 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 02:00:00) in space (linearNDFast)
17:17:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:17 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 01:00:00, weight 0.72) and
after (2025-07-02 02:00:00, weight 0.28) in time
17:17:17 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.260402741737565 degrees.
17:17:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.260402741737565 degrees.
17:17:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:17 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:17 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:17 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:17 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:17 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:17 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:17 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:17 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.11691 (min) 0.235186 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.161708 (min) 0.294798 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.344551 (min) -0.312614 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.26664 (min) 1.37253 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.36843 (min) 3.83337 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 23.4613 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.152 (min) 16.3176 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5115 (min) 32.0485 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000114948 (min) 0.000119725 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:17 DEBUG opendrift:685: No elements hit coastline.
17:17:17 DEBUG opendrift:719: Lifting 250 elements to seafloor.
17:17:17 DEBUG opendrift:1636: No elements to deactivate
17:17:17 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:17 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:17 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:17 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 11
17:17:17 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 3 3 0 0 0]
17:17:17 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 0 0 3 3 3]
17:17:17 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 239. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 20. 0.]
[ 3. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:17 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:17 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:17 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:17 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:17 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.010819081073586357
17:17:17 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:17 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:17 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:548: 9 elements reached seafloor, interacting with bottom
17:17:17 DEBUG opendrift:719: Lifting 9 elements to seafloor.
17:17:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:17 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:17 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:17 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:17 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:17 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:17 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(221), np.int64(0), np.int64(22), np.int64(257), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:17 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:17 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:17 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:17 DEBUG opendrift:2034: ======================================================================
17:17:17 INFO opendrift:2035: 2025-07-02 01:46:48.563089 - step 18 of 96 - 500 active elements (0 deactivated)
17:17:17 DEBUG opendrift:2041: 0 elements scheduled.
17:17:17 DEBUG opendrift:2043: ======================================================================
17:17:17 DEBUG opendrift:2054: 57.55898804738502 <- latitude -> 57.694165041999696
17:17:17 DEBUG opendrift:2054: 10.511967461476393 <- longitude -> 10.74390858886242
17:17:17 DEBUG opendrift:2054: -22.63072395324707 <- z -> -0.32712262478116905
17:17:17 DEBUG opendrift:2055: ---------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:17 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:17 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 01:00:00 (before)
2025-07-02 02:00:00 (after)
17:17:17 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 01:00:00) in space (linearNDFast)
17:17:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:17 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 02:00:00) in space (linearNDFast)
17:17:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:17 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 01:00:00, weight 0.22) and
after (2025-07-02 02:00:00, weight 0.78) in time
17:17:17 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.25610245128374 degrees.
17:17:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.25610245128374 degrees.
17:17:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:17 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:17 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:17 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:17 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:17 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:17 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:17 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:17 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.113718 (min) 0.240298 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.168087 (min) 0.307078 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.366855 (min) -0.331277 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: x_wind: -0.248298 (min) 0.605393 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.996121 (min) 3.95761 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 23.4934 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1503 (min) 16.3201 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5222 (min) 32.0505 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000134838 (min) 0.000114953 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:17 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:17 DEBUG opendrift:685: No elements hit coastline.
17:17:17 DEBUG opendrift:719: Lifting 257 elements to seafloor.
17:17:17 DEBUG opendrift:1636: No elements to deactivate
17:17:17 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:17 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:17 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:17 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 6
17:17:17 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0]
17:17:17 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3]
17:17:17 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 245. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 21. 0.]
[ 3. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:17 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:17 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:17 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:17 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:17 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.011339112192464054
17:17:17 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:17 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:17 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:548: 6 elements reached seafloor, interacting with bottom
17:17:17 DEBUG opendrift:719: Lifting 6 elements to seafloor.
17:17:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:17 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:17 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:17 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:17 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:17 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(215), np.int64(0), np.int64(22), np.int64(263), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:17 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:17 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:17 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:17 DEBUG opendrift:2034: ======================================================================
17:17:17 INFO opendrift:2035: 2025-07-02 02:16:48.563089 - step 19 of 96 - 500 active elements (0 deactivated)
17:17:17 DEBUG opendrift:2041: 0 elements scheduled.
17:17:17 DEBUG opendrift:2043: ======================================================================
17:17:17 DEBUG opendrift:2054: 57.55898804738502 <- latitude -> 57.69824344545812
17:17:17 DEBUG opendrift:2054: 10.511967461476393 <- longitude -> 10.748651906935462
17:17:17 DEBUG opendrift:2054: -23.183400492304965 <- z -> -0.32704595049599205
17:17:17 DEBUG opendrift:2055: ---------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:17 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:17 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 02:00:00 (before)
2025-07-02 03:00:00 (after)
17:17:19 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:19 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:19 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:19 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:19 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:19 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:19 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 45x35x7) for time after (2025-07-02 03:00:00)
17:17:19 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 02:00:00) in space (linearNDFast)
17:17:19 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:19 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 03:00:00) in space (linearNDFast)
17:17:19 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:19 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 02:00:00, weight 0.72) and
after (2025-07-02 03:00:00, weight 0.28) in time
17:17:19 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:19 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.25135914226571 degrees.
17:17:19 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.25135914226571 degrees.
17:17:19 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:19 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:19 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:19 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:19 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:19 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:19 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:19 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:19 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:19 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:19 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:19 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:19 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:19 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:19 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:19 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:19 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:19 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:19 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:19 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:19 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:19 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:19 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.111723 (min) 0.242074 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.167763 (min) 0.311145 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.380213 (min) -0.344971 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.291224 (min) 0.88846 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.519903 (min) 3.28089 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 23.6641 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1477 (min) 16.3212 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5231 (min) 32.0506 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000161264 (min) 0.000111041 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:19 DEBUG opendrift:685: No elements hit coastline.
17:17:19 DEBUG opendrift:719: Lifting 264 elements to seafloor.
17:17:19 DEBUG opendrift:1636: No elements to deactivate
17:17:19 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:19 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:19 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:19 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 7
17:17:19 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0]
17:17:19 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3]
17:17:19 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 252. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 21. 0.]
[ 3. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:19 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:19 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:19 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:19 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:19 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.007843667837930734
17:17:19 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:19 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:19 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:19 DEBUG opendrift.models.oceandrift:548: 7 elements reached seafloor, interacting with bottom
17:17:19 DEBUG opendrift:719: Lifting 7 elements to seafloor.
17:17:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:19 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:19 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:19 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:19 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(208), np.int64(0), np.int64(22), np.int64(270), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:19 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:19 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:19 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:19 DEBUG opendrift:2034: ======================================================================
17:17:19 INFO opendrift:2035: 2025-07-02 02:46:48.563089 - step 20 of 96 - 500 active elements (0 deactivated)
17:17:19 DEBUG opendrift:2041: 0 elements scheduled.
17:17:19 DEBUG opendrift:2043: ======================================================================
17:17:19 DEBUG opendrift:2054: 57.55898804738502 <- latitude -> 57.70217153541941
17:17:19 DEBUG opendrift:2054: 10.511967461476392 <- longitude -> 10.753219026383443
17:17:19 DEBUG opendrift:2054: -23.170238494873047 <- z -> -0.2592699354587474
17:17:19 DEBUG opendrift:2055: ---------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:19 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:19 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:19 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:19 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 02:00:00 (before)
2025-07-02 03:00:00 (after)
17:17:19 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 02:00:00) in space (linearNDFast)
17:17:19 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:19 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 03:00:00) in space (linearNDFast)
17:17:19 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:19 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 02:00:00, weight 0.22) and
after (2025-07-02 03:00:00, weight 0.78) in time
17:17:19 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:19 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.24679201153809 degrees.
17:17:19 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.24679201153809 degrees.
17:17:19 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:19 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:19 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:19 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:19 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:19 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:19 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:19 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:19 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:19 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:19 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:19 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:19 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:19 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:19 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:19 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:19 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:19 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:19 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:19 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:19 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:19 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:19 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.110668 (min) 0.240293 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.158374 (min) 0.308767 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.386218 (min) -0.354849 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.6148 (min) 2.33314 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.0032 (min) 1.97566 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 23.8896 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1444 (min) 16.3215 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5139 (min) 32.0493 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000200133 (min) 0.000107802 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:19 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:19 DEBUG opendrift:685: No elements hit coastline.
17:17:19 DEBUG opendrift:719: Lifting 270 elements to seafloor.
17:17:19 DEBUG opendrift:1636: No elements to deactivate
17:17:19 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:19 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:19 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:19 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
17:17:19 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0]
17:17:19 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3]
17:17:19 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 255. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 21. 0.]
[ 3. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:19 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:19 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:19 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:19 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:19 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.0050682682684096425
17:17:19 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:19 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:19 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:19 DEBUG opendrift.models.oceandrift:548: 3 elements reached seafloor, interacting with bottom
17:17:19 DEBUG opendrift:719: Lifting 3 elements to seafloor.
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:19 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:19 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:19 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:19 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:19 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:19 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(205), np.int64(0), np.int64(21), np.int64(274), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:19 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:19 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:19 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:19 DEBUG opendrift:2034: ======================================================================
17:17:19 INFO opendrift:2035: 2025-07-02 03:16:48.563089 - step 21 of 96 - 500 active elements (0 deactivated)
17:17:19 DEBUG opendrift:2041: 0 elements scheduled.
17:17:19 DEBUG opendrift:2043: ======================================================================
17:17:19 DEBUG opendrift:2054: 57.558988047385014 <- latitude -> 57.70582717406096
17:17:19 DEBUG opendrift:2054: 10.51196746147639 <- longitude -> 10.758683481564523
17:17:19 DEBUG opendrift:2054: -23.54465874039295 <- z -> -0.282511671206997
17:17:19 DEBUG opendrift:2055: ---------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:19 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:19 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:19 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:19 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:19 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 03:00:00 (before)
2025-07-02 04:00:00 (after)
17:17:21 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:21 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:21 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:21 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:21 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:21 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:21 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 47x35x7) for time after (2025-07-02 04:00:00)
17:17:21 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 03:00:00) in space (linearNDFast)
17:17:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:21 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 04:00:00) in space (linearNDFast)
17:17:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:21 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 03:00:00, weight 0.72) and
after (2025-07-02 04:00:00, weight 0.28) in time
17:17:21 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.24132755411481 degrees.
17:17:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.24132755411481 degrees.
17:17:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:21 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:21 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:21 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:21 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:21 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:21 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:21 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:21 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.112394 (min) 0.238817 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.126695 (min) 0.299523 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.389193 (min) -0.356365 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.58516 (min) 2.58321 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.97155 (min) 0.684539 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 24.2213 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1429 (min) 16.3206 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5235 (min) 32.0474 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000235208 (min) 0.000108774 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:21 DEBUG opendrift:685: No elements hit coastline.
17:17:21 DEBUG opendrift:719: Lifting 254 elements to seafloor.
17:17:21 DEBUG opendrift:1636: No elements to deactivate
17:17:21 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:21 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:21 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:21 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
17:17:21 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 3 0 0 0]
17:17:21 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0 3 3 3]
17:17:21 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 259. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 22. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:21 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:21 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:21 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:21 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:21 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.0071935618606379145
17:17:21 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:21 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:21 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:548: 4 elements reached seafloor, interacting with bottom
17:17:21 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:21 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:21 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:21 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:21 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:21 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:21 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:21 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:21 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(202), np.int64(0), np.int64(19), np.int64(279), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:21 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:21 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:21 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:21 DEBUG opendrift:2034: ======================================================================
17:17:21 INFO opendrift:2035: 2025-07-02 03:46:48.563089 - step 22 of 96 - 500 active elements (0 deactivated)
17:17:21 DEBUG opendrift:2041: 0 elements scheduled.
17:17:21 DEBUG opendrift:2043: ======================================================================
17:17:21 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.70582717406096
17:17:21 DEBUG opendrift:2054: 10.51196746147639 <- longitude -> 10.764323781335714
17:17:21 DEBUG opendrift:2054: -23.737045288085938 <- z -> -0.13137014705516092
17:17:21 DEBUG opendrift:2055: ---------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:21 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:21 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 03:00:00 (before)
2025-07-02 04:00:00 (after)
17:17:21 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 03:00:00) in space (linearNDFast)
17:17:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:21 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 04:00:00) in space (linearNDFast)
17:17:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:21 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 03:00:00, weight 0.22) and
after (2025-07-02 04:00:00, weight 0.78) in time
17:17:21 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.23568725991582 degrees.
17:17:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.23568725991582 degrees.
17:17:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:21 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:21 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:21 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:21 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:21 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:21 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:21 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:21 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.116301 (min) 0.22503 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0783277 (min) 0.285402 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.387772 (min) -0.349549 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.493618 (min) 2.21337 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.41645 (min) -0.595513 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 24.5744 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1429 (min) 16.3176 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5249 (min) 32.045 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000224044 (min) 0.000121198 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:21 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:21 DEBUG opendrift:685: No elements hit coastline.
17:17:21 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:17:21 DEBUG opendrift:1636: No elements to deactivate
17:17:21 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:21 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:21 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:21 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 8
17:17:21 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0]
17:17:21 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3]
17:17:21 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 267. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 24. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:21 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:21 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:21 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:21 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:21 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.007475528481937623
17:17:21 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:21 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:21 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:548: 8 elements reached seafloor, interacting with bottom
17:17:21 DEBUG opendrift:719: Lifting 8 elements to seafloor.
17:17:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:21 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:21 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:21 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:21 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:21 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:21 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(194), np.int64(0), np.int64(18), np.int64(288), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:21 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:21 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:21 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:21 DEBUG opendrift:2034: ======================================================================
17:17:21 INFO opendrift:2035: 2025-07-02 04:16:48.563089 - step 23 of 96 - 500 active elements (0 deactivated)
17:17:21 DEBUG opendrift:2041: 0 elements scheduled.
17:17:21 DEBUG opendrift:2043: ======================================================================
17:17:21 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.70582717406096
17:17:21 DEBUG opendrift:2054: 10.51196746147639 <- longitude -> 10.77005319557733
17:17:21 DEBUG opendrift:2054: -23.737045288085938 <- z -> -0.2742281624639315
17:17:21 DEBUG opendrift:2055: ---------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:21 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:21 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 04:00:00 (before)
2025-07-02 05:00:00 (after)
17:17:23 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:23 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:23 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:23 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:23 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:23 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:23 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 47x34x7) for time after (2025-07-02 05:00:00)
17:17:23 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 04:00:00) in space (linearNDFast)
17:17:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:23 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 05:00:00) in space (linearNDFast)
17:17:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:23 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 04:00:00, weight 0.72) and
after (2025-07-02 05:00:00, weight 0.28) in time
17:17:23 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:23 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.2299578530924 degrees.
17:17:23 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.2299578530924 degrees.
17:17:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:23 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:23 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:23 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:23 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:23 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:23 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:23 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:23 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:23 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:23 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:23 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:23 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.116565 (min) 0.209123 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0402841 (min) 0.264998 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.37518 (min) -0.335636 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.512248 (min) 2.16298 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.79902 (min) -1.65881 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 24.9376 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1429 (min) 16.3352 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4968 (min) 32.0432 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000209348 (min) 0.00013016 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:23 DEBUG opendrift:685: No elements hit coastline.
17:17:23 DEBUG opendrift:714: No elements hit seafloor.
17:17:23 DEBUG opendrift:1636: No elements to deactivate
17:17:23 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:23 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:23 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:23 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
17:17:23 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0]
17:17:23 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3]
17:17:23 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 272. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 25. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:23 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:23 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:23 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:23 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:23 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.00901419990405291
17:17:23 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:23 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:23 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:548: 5 elements reached seafloor, interacting with bottom
17:17:23 DEBUG opendrift:719: Lifting 5 elements to seafloor.
17:17:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:23 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:23 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:23 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:23 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:23 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(189), np.int64(0), np.int64(18), np.int64(293), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:23 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:23 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:23 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:23 DEBUG opendrift:2034: ======================================================================
17:17:23 INFO opendrift:2035: 2025-07-02 04:46:48.563089 - step 24 of 96 - 500 active elements (0 deactivated)
17:17:23 DEBUG opendrift:2041: 0 elements scheduled.
17:17:23 DEBUG opendrift:2043: ======================================================================
17:17:23 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.706706106126305
17:17:23 DEBUG opendrift:2054: 10.51196746147639 <- longitude -> 10.77581920094923
17:17:23 DEBUG opendrift:2054: -23.737045288085938 <- z -> -0.34094883232117995
17:17:23 DEBUG opendrift:2055: ---------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:23 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:23 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 04:00:00 (before)
2025-07-02 05:00:00 (after)
17:17:23 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 04:00:00) in space (linearNDFast)
17:17:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:23 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 05:00:00) in space (linearNDFast)
17:17:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:23 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 04:00:00, weight 0.22) and
after (2025-07-02 05:00:00, weight 0.78) in time
17:17:23 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:23 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.22419183174065 degrees.
17:17:23 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.22419183174065 degrees.
17:17:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:23 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:23 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:23 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:23 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:23 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:23 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:23 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:23 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:23 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:23 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:23 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:23 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.113968 (min) 0.20515 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.00501913 (min) 0.238735 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.353822 (min) -0.316399 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.27564 (min) 2.52021 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.11327 (min) -2.09269 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 25.2989 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1429 (min) 16.3344 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4988 (min) 32.0414 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000191879 (min) 0.000136345 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:23 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:23 DEBUG opendrift:685: No elements hit coastline.
17:17:23 DEBUG opendrift:714: No elements hit seafloor.
17:17:23 DEBUG opendrift:1636: No elements to deactivate
17:17:23 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:23 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:23 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:23 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
17:17:23 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0]
17:17:23 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3]
17:17:23 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 275. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 25. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:23 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:23 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:23 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:23 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:23 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.011215659148713334
17:17:23 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:23 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:23 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:23 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:548: 4 elements reached seafloor, interacting with bottom
17:17:23 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:17:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:23 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:23 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:23 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:23 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:23 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:23 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:23 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:23 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(186), np.int64(0), np.int64(16), np.int64(298), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:23 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:23 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:23 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:23 DEBUG opendrift:2034: ======================================================================
17:17:23 INFO opendrift:2035: 2025-07-02 05:16:48.563089 - step 25 of 96 - 500 active elements (0 deactivated)
17:17:23 DEBUG opendrift:2041: 0 elements scheduled.
17:17:23 DEBUG opendrift:2043: ======================================================================
17:17:23 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.70767576282331
17:17:23 DEBUG opendrift:2054: 10.51196746147639 <- longitude -> 10.781551036593996
17:17:23 DEBUG opendrift:2054: -23.737045288085938 <- z -> -0.5364346514950504
17:17:23 DEBUG opendrift:2055: ---------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:23 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:23 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 05:00:00 (before)
2025-07-02 06:00:00 (after)
17:17:25 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:25 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:25 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:25 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:25 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:25 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:25 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 47x35x7) for time after (2025-07-02 06:00:00)
17:17:25 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 05:00:00) in space (linearNDFast)
17:17:25 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:25 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 06:00:00) in space (linearNDFast)
17:17:25 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:25 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 05:00:00, weight 0.72) and
after (2025-07-02 06:00:00, weight 0.28) in time
17:17:25 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:25 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.2184599925457 degrees.
17:17:25 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.2184599925457 degrees.
17:17:25 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:25 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:25 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:25 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:25 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:25 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:25 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:25 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:25 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:25 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:25 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:25 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:25 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:25 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:25 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:25 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:25 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:25 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:25 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:25 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:25 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:25 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:25 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.11425 (min) 0.198567 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0437357 (min) 0.212223 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.322334 (min) -0.289767 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.09005 (min) 1.45058 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.07544 (min) -2.11638 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 25.6524 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1429 (min) 16.3322 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5331 (min) 32.0399 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000158982 (min) 0.000147011 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:25 DEBUG opendrift:685: No elements hit coastline.
17:17:25 DEBUG opendrift:714: No elements hit seafloor.
17:17:25 DEBUG opendrift:1636: No elements to deactivate
17:17:25 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:25 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:25 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:25 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 6
17:17:25 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0]
17:17:25 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3]
17:17:25 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 281. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 27. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:25 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:25 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:25 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:25 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:25 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.00796821355832984
17:17:25 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:25 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:25 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:548: 6 elements reached seafloor, interacting with bottom
17:17:25 DEBUG opendrift:719: Lifting 6 elements to seafloor.
17:17:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:25 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:25 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:25 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:25 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:25 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:25 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(180), np.int64(0), np.int64(15), np.int64(305), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:25 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:25 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:25 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:25 DEBUG opendrift:2034: ======================================================================
17:17:25 INFO opendrift:2035: 2025-07-02 05:46:48.563089 - step 26 of 96 - 500 active elements (0 deactivated)
17:17:25 DEBUG opendrift:2041: 0 elements scheduled.
17:17:25 DEBUG opendrift:2043: ======================================================================
17:17:25 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.707768942466366
17:17:25 DEBUG opendrift:2054: 10.51196746147639 <- longitude -> 10.78684461020613
17:17:25 DEBUG opendrift:2054: -24.655676741767422 <- z -> -0.2739746636754249
17:17:25 DEBUG opendrift:2055: ---------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:25 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:25 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:25 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:25 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 05:00:00 (before)
2025-07-02 06:00:00 (after)
17:17:25 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 05:00:00) in space (linearNDFast)
17:17:25 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:25 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 06:00:00) in space (linearNDFast)
17:17:25 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:25 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 05:00:00, weight 0.22) and
after (2025-07-02 06:00:00, weight 0.78) in time
17:17:25 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:25 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.21316642027695 degrees.
17:17:25 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.21316642027695 degrees.
17:17:25 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:25 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:25 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:25 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:25 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:25 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:25 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:25 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:25 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:25 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:25 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:25 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:25 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:25 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:25 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:25 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:25 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:25 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:25 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:25 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:25 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:25 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:25 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.116792 (min) 0.189006 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0676539 (min) 0.185515 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.283481 (min) -0.2575 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: x_wind: -2.20962 (min) -0.712413 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.77858 (min) -1.79881 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 25.9737 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1429 (min) 16.3361 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5338 (min) 32.2004 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000138913 (min) 0.000186261 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:25 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:25 DEBUG opendrift:685: No elements hit coastline.
17:17:25 DEBUG opendrift:714: No elements hit seafloor.
17:17:25 DEBUG opendrift:1636: No elements to deactivate
17:17:25 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:25 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:25 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:25 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 12
17:17:25 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 3 0 0 0 0 3 3 0 0]
17:17:25 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 0 3 3 3 3 0 0 3 3]
17:17:25 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 290. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 28. 0.]
[ 7. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:25 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:25 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:25 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:25 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:25 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.008215531826764072
17:17:25 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:25 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:25 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:25 DEBUG opendrift.models.oceandrift:548: 9 elements reached seafloor, interacting with bottom
17:17:25 DEBUG opendrift:719: Lifting 9 elements to seafloor.
17:17:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:25 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:25 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:25 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:25 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:25 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(174), np.int64(0), np.int64(15), np.int64(311), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:25 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:25 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:25 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:25 DEBUG opendrift:2034: ======================================================================
17:17:25 INFO opendrift:2035: 2025-07-02 06:16:48.563089 - step 27 of 96 - 500 active elements (0 deactivated)
17:17:25 DEBUG opendrift:2041: 0 elements scheduled.
17:17:25 DEBUG opendrift:2043: ======================================================================
17:17:25 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.707498472490435
17:17:25 DEBUG opendrift:2054: 10.51196746147639 <- longitude -> 10.79145080579785
17:17:25 DEBUG opendrift:2054: -23.737045288085938 <- z -> -0.19451871725753092
17:17:25 DEBUG opendrift:2055: ---------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:25 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:25 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:25 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:25 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:25 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 06:00:00 (before)
2025-07-02 07:00:00 (after)
17:17:27 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:27 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:27 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:27 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:27 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:27 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:27 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 47x35x7) for time after (2025-07-02 07:00:00)
17:17:27 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 06:00:00) in space (linearNDFast)
17:17:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:27 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 07:00:00) in space (linearNDFast)
17:17:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:27 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 06:00:00, weight 0.72) and
after (2025-07-02 07:00:00, weight 0.28) in time
17:17:27 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.20856022186716 degrees.
17:17:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.20856022186716 degrees.
17:17:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:27 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:27 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:27 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:27 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:27 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:27 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:27 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:27 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.114582 (min) 0.180356 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0843253 (min) 0.165729 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.242963 (min) -0.224063 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: x_wind: -3.69503 (min) -2.24133 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.8239 (min) -0.943076 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.1182 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1429 (min) 16.3397 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5456 (min) 32.0574 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000136224 (min) 0.000214318 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:27 DEBUG opendrift:685: No elements hit coastline.
17:17:27 DEBUG opendrift:714: No elements hit seafloor.
17:17:27 DEBUG opendrift:1636: No elements to deactivate
17:17:27 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:27 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:27 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:27 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
17:17:27 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 0 0 0 0]
17:17:27 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3 3 3 3]
17:17:27 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 294. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 28. 0.]
[ 8. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:27 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:27 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:27 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:27 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:27 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.01160077382779082
17:17:27 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:27 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:27 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:548: 4 elements reached seafloor, interacting with bottom
17:17:27 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:17:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:27 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:27 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:27 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:27 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:27 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:27 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:27 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(171), np.int64(0), np.int64(14), np.int64(315), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:27 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:27 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:27 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:27 DEBUG opendrift:2034: ======================================================================
17:17:27 INFO opendrift:2035: 2025-07-02 06:46:48.563089 - step 28 of 96 - 500 active elements (0 deactivated)
17:17:27 DEBUG opendrift:2041: 0 elements scheduled.
17:17:27 DEBUG opendrift:2043: ======================================================================
17:17:27 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.70737815748657
17:17:27 DEBUG opendrift:2054: 10.511967461476393 <- longitude -> 10.795371125526419
17:17:27 DEBUG opendrift:2054: -23.737045288085938 <- z -> -0.2581551467112335
17:17:27 DEBUG opendrift:2055: ---------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:27 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:27 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 06:00:00 (before)
2025-07-02 07:00:00 (after)
17:17:27 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 06:00:00) in space (linearNDFast)
17:17:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:27 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 07:00:00) in space (linearNDFast)
17:17:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:27 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 06:00:00, weight 0.22) and
after (2025-07-02 07:00:00, weight 0.78) in time
17:17:27 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.20463990647522 degrees.
17:17:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.20463990647522 degrees.
17:17:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:27 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:27 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:27 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:27 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:27 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:27 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:27 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:27 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:27 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.108643 (min) 0.16893 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.111779 (min) 0.13989 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.199947 (min) -0.189146 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: x_wind: -4.42923 (min) -3.49065 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.366124 (min) 0.582413 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.2872 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1429 (min) 16.3456 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5379 (min) 32.1812 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000133149 (min) 0.000217898 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:27 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:27 DEBUG opendrift:685: No elements hit coastline.
17:17:27 DEBUG opendrift:714: No elements hit seafloor.
17:17:27 DEBUG opendrift:1636: No elements to deactivate
17:17:27 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:27 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:27 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:27 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
17:17:27 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0]
17:17:27 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3]
17:17:27 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 299. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 29. 0.]
[ 8. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:27 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:27 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:27 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:27 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:27 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.0141988976437911
17:17:27 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:27 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:27 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:27 DEBUG opendrift.models.oceandrift:548: 5 elements reached seafloor, interacting with bottom
17:17:27 DEBUG opendrift:719: Lifting 5 elements to seafloor.
17:17:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:27 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:27 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:27 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:28 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:28 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:28 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:28 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:28 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:28 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(166), np.int64(0), np.int64(13), np.int64(321), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:28 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:28 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:28 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:28 DEBUG opendrift:2034: ======================================================================
17:17:28 INFO opendrift:2035: 2025-07-02 07:16:48.563089 - step 29 of 96 - 500 active elements (0 deactivated)
17:17:28 DEBUG opendrift:2041: 0 elements scheduled.
17:17:28 DEBUG opendrift:2043: ======================================================================
17:17:28 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.707630736318045
17:17:28 DEBUG opendrift:2054: 10.511967461476397 <- longitude -> 10.799074570617437
17:17:28 DEBUG opendrift:2054: -23.867108563705173 <- z -> -0.04649589365490908
17:17:28 DEBUG opendrift:2055: ---------------------------------
17:17:28 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:28 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:28 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:28 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:28 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:28 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:28 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:28 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 07:00:00 (before)
2025-07-02 08:00:00 (after)
17:17:29 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:29 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:29 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:29 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:29 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:29 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:29 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 48x36x7) for time after (2025-07-02 08:00:00)
17:17:29 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 07:00:00) in space (linearNDFast)
17:17:29 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:29 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 08:00:00) in space (linearNDFast)
17:17:29 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:29 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 07:00:00, weight 0.72) and
after (2025-07-02 08:00:00, weight 0.28) in time
17:17:29 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:29 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.20093646801685 degrees.
17:17:29 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.20093646801685 degrees.
17:17:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:29 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:29 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:29 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:29 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:29 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:29 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:29 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:29 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:29 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:29 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:29 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:29 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.105947 (min) 0.162202 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.128967 (min) 0.126142 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.163294 (min) -0.155361 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: x_wind: -5.00639 (min) -4.06492 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.62614 (min) 1.48046 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.4414 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1456 (min) 16.3128 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.423 (min) 32.3333 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000129438 (min) 0.000274648 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:29 DEBUG opendrift:685: No elements hit coastline.
17:17:29 DEBUG opendrift:714: No elements hit seafloor.
17:17:29 DEBUG opendrift:1636: No elements to deactivate
17:17:29 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:29 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:29 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:29 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 7
17:17:29 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 3 0 0 0 0]
17:17:29 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 0 3 3 3 3]
17:17:29 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 305. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 30. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:29 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:29 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:29 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:29 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:29 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.019164292179308713
17:17:29 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:29 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:29 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:29 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:548: 6 elements reached seafloor, interacting with bottom
17:17:29 DEBUG opendrift:719: Lifting 6 elements to seafloor.
17:17:29 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:29 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:29 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:29 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:29 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:29 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(161), np.int64(0), np.int64(13), np.int64(326), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:29 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:29 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:29 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:29 DEBUG opendrift:2034: ======================================================================
17:17:29 INFO opendrift:2035: 2025-07-02 07:46:48.563089 - step 30 of 96 - 500 active elements (0 deactivated)
17:17:29 DEBUG opendrift:2041: 0 elements scheduled.
17:17:29 DEBUG opendrift:2043: ======================================================================
17:17:29 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.70755101968786
17:17:29 DEBUG opendrift:2054: 10.511967461476397 <- longitude -> 10.803072124527542
17:17:29 DEBUG opendrift:2054: -23.737045288085938 <- z -> -0.018635683277879567
17:17:29 DEBUG opendrift:2055: ---------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:29 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:29 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 07:00:00 (before)
2025-07-02 08:00:00 (after)
17:17:29 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 07:00:00) in space (linearNDFast)
17:17:29 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:29 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 08:00:00) in space (linearNDFast)
17:17:29 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:29 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 07:00:00, weight 0.22) and
after (2025-07-02 08:00:00, weight 0.78) in time
17:17:29 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:29 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.196938914096236 degrees.
17:17:29 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.196938914096236 degrees.
17:17:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:29 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:29 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:29 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:29 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:29 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:29 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:29 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:29 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:29 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:29 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:29 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:29 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.109844 (min) 0.155338 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.133918 (min) 0.112199 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.136479 (min) -0.12478 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: x_wind: -5.51258 (min) -4.10945 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.29948 (min) 2.52182 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.5921 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1492 (min) 16.3063 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4242 (min) 32.5076 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000124991 (min) 0.000357413 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:29 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:29 DEBUG opendrift:685: No elements hit coastline.
17:17:29 DEBUG opendrift:714: No elements hit seafloor.
17:17:29 DEBUG opendrift:1636: No elements to deactivate
17:17:29 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:29 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:29 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:29 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:17:29 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
17:17:29 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
17:17:29 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 306. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 30. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:29 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:29 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:29 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:29 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:29 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.025657225721298537
17:17:29 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:29 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:29 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:29 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:29 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:29 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:29 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:29 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:29 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:29 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:29 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:29 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(160), np.int64(0), np.int64(13), np.int64(327), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:29 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:29 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:29 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:29 DEBUG opendrift:2034: ======================================================================
17:17:29 INFO opendrift:2035: 2025-07-02 08:16:48.563089 - step 31 of 96 - 500 active elements (0 deactivated)
17:17:29 DEBUG opendrift:2041: 0 elements scheduled.
17:17:29 DEBUG opendrift:2043: ======================================================================
17:17:29 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.70737815748657
17:17:29 DEBUG opendrift:2054: 10.511967461476397 <- longitude -> 10.805751321009065
17:17:29 DEBUG opendrift:2054: -24.48784977951717 <- z -> 0.0
17:17:29 DEBUG opendrift:2055: ---------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:29 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:29 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 08:00:00 (before)
2025-07-02 09:00:00 (after)
17:17:31 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:31 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:31 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:31 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:31 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:31 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:31 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 48x36x7) for time after (2025-07-02 09:00:00)
17:17:31 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 08:00:00) in space (linearNDFast)
17:17:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:31 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 09:00:00) in space (linearNDFast)
17:17:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:31 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 08:00:00, weight 0.72) and
after (2025-07-02 09:00:00, weight 0.28) in time
17:17:31 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.194259711463815 degrees.
17:17:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.194259711463815 degrees.
17:17:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:31 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:31 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:31 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:31 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:31 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:31 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:31 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:31 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.11069 (min) 0.14882 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.13035 (min) 0.10367 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.117228 (min) -0.10474 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: x_wind: -5.42963 (min) -3.90336 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.73626 (min) 2.72202 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.6212 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1493 (min) 16.3575 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4256 (min) 32.6613 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000125364 (min) 0.000414457 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:31 DEBUG opendrift:685: No elements hit coastline.
17:17:31 DEBUG opendrift:714: No elements hit seafloor.
17:17:31 DEBUG opendrift:1636: No elements to deactivate
17:17:31 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:31 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:31 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:31 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 6
17:17:31 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 3 0 0 3]
17:17:31 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 0 3 3 0]
17:17:31 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 310. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 30. 0.]
[ 11. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:31 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:31 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:31 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:31 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:31 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.02531887195403981
17:17:31 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:31 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:31 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:31 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:548: 4 elements reached seafloor, interacting with bottom
17:17:31 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:17:31 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:31 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:31 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:31 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:31 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:31 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(158), np.int64(0), np.int64(13), np.int64(329), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:31 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:31 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:31 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:31 DEBUG opendrift:2034: ======================================================================
17:17:31 INFO opendrift:2035: 2025-07-02 08:46:48.563089 - step 32 of 96 - 500 active elements (0 deactivated)
17:17:31 DEBUG opendrift:2041: 0 elements scheduled.
17:17:31 DEBUG opendrift:2043: ======================================================================
17:17:31 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.70737815748658
17:17:31 DEBUG opendrift:2054: 10.511967461476397 <- longitude -> 10.809317479410073
17:17:31 DEBUG opendrift:2054: -25.163158416748047 <- z -> -0.01702010955216615
17:17:31 DEBUG opendrift:2055: ---------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:31 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:31 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 08:00:00 (before)
2025-07-02 09:00:00 (after)
17:17:31 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 08:00:00) in space (linearNDFast)
17:17:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:31 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 09:00:00) in space (linearNDFast)
17:17:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:31 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 08:00:00, weight 0.22) and
after (2025-07-02 09:00:00, weight 0.78) in time
17:17:31 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.1906935547517 degrees.
17:17:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.1906935547517 degrees.
17:17:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:31 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:31 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:31 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:31 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:31 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:31 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:31 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:31 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.109141 (min) 0.142875 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.127745 (min) 0.0962775 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.103914 (min) -0.0931054 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: x_wind: -4.88744 (min) -3.50059 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.61157 (min) 2.24083 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.5605 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1494 (min) 16.4137 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4168 (min) 32.7988 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000118178 (min) 0.000492374 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:31 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:31 DEBUG opendrift:685: No elements hit coastline.
17:17:31 DEBUG opendrift:714: No elements hit seafloor.
17:17:31 DEBUG opendrift:1636: No elements to deactivate
17:17:31 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:31 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:31 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:31 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 7
17:17:31 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 3 0 3 3 0 0]
17:17:31 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0 3 0 0 3 3]
17:17:31 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 314. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 30. 0.]
[ 14. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:31 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:31 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:31 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:31 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:31 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.020091017899762358
17:17:31 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:31 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:31 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:31 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:548: 4 elements reached seafloor, interacting with bottom
17:17:31 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:17:31 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:31 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:31 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:31 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:31 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:31 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:31 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(157), np.int64(0), np.int64(13), np.int64(330), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:31 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:31 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:31 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:31 DEBUG opendrift:2034: ======================================================================
17:17:31 INFO opendrift:2035: 2025-07-02 09:16:48.563089 - step 33 of 96 - 500 active elements (0 deactivated)
17:17:31 DEBUG opendrift:2041: 0 elements scheduled.
17:17:31 DEBUG opendrift:2043: ======================================================================
17:17:31 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.70737815748657
17:17:31 DEBUG opendrift:2054: 10.5119674614764 <- longitude -> 10.810813236234189
17:17:31 DEBUG opendrift:2054: -25.163158416748047 <- z -> -0.28772574550504376
17:17:31 DEBUG opendrift:2055: ---------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:31 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:31 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 09:00:00 (before)
2025-07-02 10:00:00 (after)
17:17:33 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:33 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:33 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:33 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:33 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:33 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:33 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 48x37x7) for time after (2025-07-02 10:00:00)
17:17:33 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 09:00:00) in space (linearNDFast)
17:17:33 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:33 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 10:00:00) in space (linearNDFast)
17:17:33 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:33 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 09:00:00, weight 0.72) and
after (2025-07-02 10:00:00, weight 0.28) in time
17:17:33 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:33 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.18919780295677 degrees.
17:17:33 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.18919780295677 degrees.
17:17:33 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:33 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:33 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:33 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:33 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:33 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:33 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:33 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:33 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:33 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:33 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:33 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:33 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:33 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:33 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:33 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:33 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:33 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:33 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:33 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:33 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:33 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:33 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:33 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:33 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:33 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:33 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:33 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:33 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:33 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.108939 (min) 0.134902 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.133845 (min) 0.108222 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0988836 (min) -0.089558 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: x_wind: -4.50844 (min) -3.41226 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.15451 (min) 2.92056 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.65 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1509 (min) 16.355 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3711 (min) 32.9062 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000118619 (min) 0.000462392 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:33 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:33 DEBUG opendrift:685: No elements hit coastline.
17:17:33 DEBUG opendrift:714: No elements hit seafloor.
17:17:33 DEBUG opendrift:1636: No elements to deactivate
17:17:33 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:33 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:33 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:33 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
17:17:33 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 3 0]
17:17:33 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 0 3]
17:17:33 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 317. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 30. 0.]
[ 15. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:33 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:33 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:33 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:33 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:33 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.020389906445974205
17:17:33 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:33 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:33 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:33 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:548: 3 elements reached seafloor, interacting with bottom
17:17:33 DEBUG opendrift:719: Lifting 3 elements to seafloor.
17:17:33 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:33 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:33 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:33 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:33 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:33 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:33 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:33 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:33 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(155), np.int64(0), np.int64(12), np.int64(333), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:33 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:33 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:33 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:33 DEBUG opendrift:2034: ======================================================================
17:17:33 INFO opendrift:2035: 2025-07-02 09:46:48.563089 - step 34 of 96 - 500 active elements (0 deactivated)
17:17:33 DEBUG opendrift:2041: 0 elements scheduled.
17:17:33 DEBUG opendrift:2043: ======================================================================
17:17:33 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.70737815748657
17:17:33 DEBUG opendrift:2054: 10.511967461476397 <- longitude -> 10.813486385501413
17:17:33 DEBUG opendrift:2054: -25.257373809814453 <- z -> -0.2199383391713015
17:17:33 DEBUG opendrift:2055: ---------------------------------
17:17:33 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:33 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:33 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:33 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:33 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:33 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:33 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:33 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 09:00:00 (before)
2025-07-02 10:00:00 (after)
17:17:33 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 09:00:00) in space (linearNDFast)
17:17:33 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:34 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 10:00:00) in space (linearNDFast)
17:17:34 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:34 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 09:00:00, weight 0.22) and
after (2025-07-02 10:00:00, weight 0.78) in time
17:17:34 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:34 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.18652464033637 degrees.
17:17:34 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.18652464033637 degrees.
17:17:34 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:34 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:34 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:34 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:34 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:34 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:34 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:34 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:34 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:34 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:34 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:34 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:34 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:34 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:34 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:34 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:34 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:34 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:34 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:34 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:34 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:34 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:34 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:34 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:34 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:34 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:34 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:34 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:34 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:34 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.109795 (min) 0.126297 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.134881 (min) 0.123821 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.100354 (min) -0.0926434 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: x_wind: -4.37733 (min) -3.5339 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.51238 (min) 4.2088 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.7567 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1535 (min) 16.3713 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3275 (min) 32.9901 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000126436 (min) 0.000349696 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:34 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:34 DEBUG opendrift:685: No elements hit coastline.
17:17:34 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:17:34 DEBUG opendrift:1636: No elements to deactivate
17:17:34 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:34 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:34 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:34 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
17:17:34 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0]
17:17:34 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3]
17:17:34 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 322. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 31. 0.]
[ 15. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:34 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:34 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:34 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:34 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:34 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.026163583377626285
17:17:34 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:34 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:34 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:548: 5 elements reached seafloor, interacting with bottom
17:17:34 DEBUG opendrift:719: Lifting 5 elements to seafloor.
17:17:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:34 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:34 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:34 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:34 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:34 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(150), np.int64(0), np.int64(12), np.int64(338), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:34 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:34 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:34 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:34 DEBUG opendrift:2034: ======================================================================
17:17:34 INFO opendrift:2035: 2025-07-02 10:16:48.563089 - step 35 of 96 - 500 active elements (0 deactivated)
17:17:34 DEBUG opendrift:2041: 0 elements scheduled.
17:17:34 DEBUG opendrift:2043: ======================================================================
17:17:34 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.70737815748657
17:17:34 DEBUG opendrift:2054: 10.511967461476397 <- longitude -> 10.813347289421996
17:17:34 DEBUG opendrift:2054: -25.253524780273438 <- z -> 0.0
17:17:34 DEBUG opendrift:2055: ---------------------------------
17:17:34 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:34 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:34 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:34 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:34 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:34 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:34 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:34 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 10:00:00 (before)
2025-07-02 11:00:00 (after)
17:17:35 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:35 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:35 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:35 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:35 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:35 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:35 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 47x37x7) for time after (2025-07-02 11:00:00)
17:17:35 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 10:00:00) in space (linearNDFast)
17:17:35 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:35 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 11:00:00) in space (linearNDFast)
17:17:35 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:35 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 10:00:00, weight 0.72) and
after (2025-07-02 11:00:00, weight 0.28) in time
17:17:35 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:35 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.18666373866373 degrees.
17:17:35 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.18666373866373 degrees.
17:17:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:35 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:35 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:35 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:35 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:35 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:35 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:35 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:35 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:35 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:35 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:35 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:35 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:35 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.111614 (min) 0.119805 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.125921 (min) 0.130218 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.110542 (min) -0.103557 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: x_wind: -4.40483 (min) -2.89478 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.37502 (min) 4.39132 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.6511 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1548 (min) 16.3678 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3947 (min) 33.0466 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000127358 (min) 0.000323309 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:35 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:35 DEBUG opendrift:685: No elements hit coastline.
17:17:35 DEBUG opendrift:719: Lifting 13 elements to seafloor.
17:17:35 DEBUG opendrift:1636: No elements to deactivate
17:17:35 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:35 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:35 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:35 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
17:17:35 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0]
17:17:35 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3]
17:17:35 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 325. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 31. 0.]
[ 15. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:35 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:35 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:35 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:35 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:35 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.027191470832111993
17:17:35 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:35 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:35 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:35 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:35 DEBUG opendrift.models.oceandrift:548: 3 elements reached seafloor, interacting with bottom
17:17:35 DEBUG opendrift:719: Lifting 3 elements to seafloor.
17:17:35 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:35 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:35 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:35 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:35 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:35 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:35 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:35 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:35 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:35 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:17:35 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:35 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:35 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:35 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:35 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:35 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:35 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 8 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:36 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:36 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:36 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:36 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:36 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(147), np.int64(0), np.int64(11), np.int64(342), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:36 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:36 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:36 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:36 DEBUG opendrift:2034: ======================================================================
17:17:36 INFO opendrift:2035: 2025-07-02 10:46:48.563089 - step 36 of 96 - 500 active elements (0 deactivated)
17:17:36 DEBUG opendrift:2041: 0 elements scheduled.
17:17:36 DEBUG opendrift:2043: ======================================================================
17:17:36 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.70737815748657
17:17:36 DEBUG opendrift:2054: 10.511967461476397 <- longitude -> 10.812032861049136
17:17:36 DEBUG opendrift:2054: -25.242097854614258 <- z -> -0.019383582865799664
17:17:36 DEBUG opendrift:2055: ---------------------------------
17:17:36 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:36 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:36 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:36 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:36 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:36 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:36 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:36 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 10:00:00 (before)
2025-07-02 11:00:00 (after)
17:17:36 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 10:00:00) in space (linearNDFast)
17:17:36 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:36 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 11:00:00) in space (linearNDFast)
17:17:36 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:36 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 10:00:00, weight 0.22) and
after (2025-07-02 11:00:00, weight 0.78) in time
17:17:36 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:36 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.18797818287209 degrees.
17:17:36 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.18797818287209 degrees.
17:17:36 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:36 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:36 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:36 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:36 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:36 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:36 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:36 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:36 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:36 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:36 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:36 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:36 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:36 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:36 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:36 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:36 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:36 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:36 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:36 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:36 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:36 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:36 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:36 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:36 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:36 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:36 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:36 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:36 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:36 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.114189 (min) 0.109759 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.120687 (min) 0.175826 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.127572 (min) -0.120671 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: x_wind: -4.6483 (min) -1.93102 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.73715 (min) 3.7542 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.5507 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1549 (min) 16.3515 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3632 (min) 33.0816 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000122871 (min) 0.00028588 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:36 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:36 DEBUG opendrift:685: No elements hit coastline.
17:17:36 DEBUG opendrift:719: Lifting 21 elements to seafloor.
17:17:36 DEBUG opendrift:1636: No elements to deactivate
17:17:36 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:36 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:36 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:36 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
17:17:36 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0]
17:17:36 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3]
17:17:36 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 329. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 32. 0.]
[ 15. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:36 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:36 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:36 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:36 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:36 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.02460058268910322
17:17:36 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:36 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:36 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:36 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:548: 4 elements reached seafloor, interacting with bottom
17:17:36 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:17:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:36 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:36 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:36 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:36 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:36 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(143), np.int64(0), np.int64(11), np.int64(346), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:36 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:36 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:36 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:36 DEBUG opendrift:2034: ======================================================================
17:17:36 INFO opendrift:2035: 2025-07-02 11:16:48.563089 - step 37 of 96 - 500 active elements (0 deactivated)
17:17:36 DEBUG opendrift:2041: 0 elements scheduled.
17:17:36 DEBUG opendrift:2043: ======================================================================
17:17:36 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.70737815748657
17:17:36 DEBUG opendrift:2054: 10.511967461476397 <- longitude -> 10.810910846755327
17:17:36 DEBUG opendrift:2054: -25.224721908569336 <- z -> -0.14128586127645915
17:17:36 DEBUG opendrift:2055: ---------------------------------
17:17:36 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:36 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:36 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:36 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:36 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:36 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:36 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:36 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 11:00:00 (before)
2025-07-02 12:00:00 (after)
17:17:38 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:38 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:38 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:38 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:38 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:38 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:38 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 47x37x7) for time after (2025-07-02 12:00:00)
17:17:38 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 11:00:00) in space (linearNDFast)
17:17:38 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:38 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 12:00:00) in space (linearNDFast)
17:17:38 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:38 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 11:00:00, weight 0.72) and
after (2025-07-02 12:00:00, weight 0.28) in time
17:17:38 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:38 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.18910019280559 degrees.
17:17:38 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.18910019280559 degrees.
17:17:38 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:38 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:38 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:38 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:38 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:38 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:38 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:38 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:38 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:38 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:38 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:38 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:38 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:38 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:38 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:38 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:38 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:38 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:38 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:38 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:38 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:38 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:38 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.119614 (min) 0.0966431 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.121075 (min) 0.190038 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.150309 (min) -0.140776 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: x_wind: -3.95576 (min) -0.924639 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.29751 (min) 3.27866 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.5479 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1564 (min) 16.4069 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.2919 (min) 33.0999 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000110687 (min) 0.00027196 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:38 DEBUG opendrift:685: No elements hit coastline.
17:17:38 DEBUG opendrift:719: Lifting 27 elements to seafloor.
17:17:38 DEBUG opendrift:1636: No elements to deactivate
17:17:38 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:38 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:38 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:38 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 11
17:17:38 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 3 0 0 0 0]
17:17:38 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 0 3 3 3 3]
17:17:38 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 339. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 32. 0.]
[ 16. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:38 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:38 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:38 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:38 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:38 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.01902984175992074
17:17:38 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:38 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:38 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:548: 10 elements reached seafloor, interacting with bottom
17:17:38 DEBUG opendrift:719: Lifting 10 elements to seafloor.
17:17:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:38 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:38 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:38 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:38 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:38 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(134), np.int64(0), np.int64(11), np.int64(355), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:38 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:38 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:38 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:38 DEBUG opendrift:2034: ======================================================================
17:17:38 INFO opendrift:2035: 2025-07-02 11:46:48.563089 - step 38 of 96 - 500 active elements (0 deactivated)
17:17:38 DEBUG opendrift:2041: 0 elements scheduled.
17:17:38 DEBUG opendrift:2043: ======================================================================
17:17:38 DEBUG opendrift:2054: 57.558988047385014 <- latitude -> 57.70737815748658
17:17:38 DEBUG opendrift:2054: 10.511967461476397 <- longitude -> 10.811054326415682
17:17:38 DEBUG opendrift:2054: -25.203479766845703 <- z -> 0.0
17:17:38 DEBUG opendrift:2055: ---------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:38 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:38 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:38 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:38 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 11:00:00 (before)
2025-07-02 12:00:00 (after)
17:17:38 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 11:00:00) in space (linearNDFast)
17:17:38 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:38 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 12:00:00) in space (linearNDFast)
17:17:38 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:38 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 11:00:00, weight 0.22) and
after (2025-07-02 12:00:00, weight 0.78) in time
17:17:38 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:38 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.18895669993929 degrees.
17:17:38 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.18895669993929 degrees.
17:17:38 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:38 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:38 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:38 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:38 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:38 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:38 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:38 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:38 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:38 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:38 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:38 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:38 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:38 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:38 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:38 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:38 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:38 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:38 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:38 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:38 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:38 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:38 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.129549 (min) 0.0855754 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.11432 (min) 0.195818 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.177524 (min) -0.162501 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: x_wind: -3.12047 (min) 0.350542 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.0818483 (min) 3.62681 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.5264 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1589 (min) 16.4457 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4328 (min) 33.105 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -9.76205e-05 (min) 0.000247224 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:38 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:38 DEBUG opendrift:685: No elements hit coastline.
17:17:38 DEBUG opendrift:719: Lifting 42 elements to seafloor.
17:17:38 DEBUG opendrift:1636: No elements to deactivate
17:17:38 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:38 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:38 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:38 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
17:17:38 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0]
17:17:38 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3]
17:17:38 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 344. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 32. 0.]
[ 16. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:38 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:38 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:38 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:38 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:38 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.015868276317551378
17:17:38 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:38 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:38 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:548: 5 elements reached seafloor, interacting with bottom
17:17:38 DEBUG opendrift:719: Lifting 5 elements to seafloor.
17:17:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:38 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:38 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:38 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:38 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:38 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(129), np.int64(0), np.int64(11), np.int64(360), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:38 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:38 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:38 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:38 DEBUG opendrift:2034: ======================================================================
17:17:38 INFO opendrift:2035: 2025-07-02 12:16:48.563089 - step 39 of 96 - 500 active elements (0 deactivated)
17:17:38 DEBUG opendrift:2041: 0 elements scheduled.
17:17:38 DEBUG opendrift:2043: ======================================================================
17:17:38 DEBUG opendrift:2054: 57.558988047385014 <- latitude -> 57.70737815748657
17:17:38 DEBUG opendrift:2054: 10.5119674614764 <- longitude -> 10.810901747940985
17:17:38 DEBUG opendrift:2054: -25.1792049407959 <- z -> -0.26510181847903896
17:17:38 DEBUG opendrift:2055: ---------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:38 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:38 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:38 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:38 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:38 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 12:00:00 (before)
2025-07-02 13:00:00 (after)
17:17:40 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:40 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:40 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:40 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:40 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:40 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:40 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 48x37x7) for time after (2025-07-02 13:00:00)
17:17:40 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 12:00:00) in space (linearNDFast)
17:17:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:40 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 13:00:00) in space (linearNDFast)
17:17:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:40 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 12:00:00, weight 0.72) and
after (2025-07-02 13:00:00, weight 0.28) in time
17:17:40 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.18910926375801 degrees.
17:17:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.18910926375801 degrees.
17:17:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:40 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:40 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:40 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:40 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:40 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:40 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:40 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:40 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.133218 (min) 0.0813521 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.104626 (min) 0.198162 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.20385 (min) -0.185437 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: x_wind: -2.08289 (min) 0.76518 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.13397 (min) 1.96519 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.4127 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1614 (min) 16.494 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4127 (min) 33.0995 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -7.98952e-05 (min) 0.000218241 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:40 DEBUG opendrift:685: No elements hit coastline.
17:17:40 DEBUG opendrift:719: Lifting 53 elements to seafloor.
17:17:40 DEBUG opendrift:1636: No elements to deactivate
17:17:40 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:40 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:40 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:40 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
17:17:40 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 0 0]
17:17:40 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3 3]
17:17:40 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 346. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 32. 0.]
[ 17. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:40 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:40 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:40 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:40 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:40 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.005716079006910756
17:17:40 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:40 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:40 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:40 DEBUG opendrift.models.oceandrift:548: 2 elements reached seafloor, interacting with bottom
17:17:40 DEBUG opendrift:719: Lifting 2 elements to seafloor.
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:40 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:40 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:40 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:40 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(128), np.int64(0), np.int64(11), np.int64(361), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:40 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:40 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:40 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:40 DEBUG opendrift:2034: ======================================================================
17:17:40 INFO opendrift:2035: 2025-07-02 12:46:48.563089 - step 40 of 96 - 500 active elements (0 deactivated)
17:17:40 DEBUG opendrift:2041: 0 elements scheduled.
17:17:40 DEBUG opendrift:2043: ======================================================================
17:17:40 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.70873748651214
17:17:40 DEBUG opendrift:2054: 10.5119674614764 <- longitude -> 10.809485175240697
17:17:40 DEBUG opendrift:2054: -25.15439796447754 <- z -> -0.3134626035862169
17:17:40 DEBUG opendrift:2055: ---------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:40 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:40 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 12:00:00 (before)
2025-07-02 13:00:00 (after)
17:17:40 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 12:00:00) in space (linearNDFast)
17:17:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:40 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 13:00:00) in space (linearNDFast)
17:17:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:40 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 12:00:00, weight 0.22) and
after (2025-07-02 13:00:00, weight 0.78) in time
17:17:40 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.190525855026436 degrees.
17:17:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.190525855026436 degrees.
17:17:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:40 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:40 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:40 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:40 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:40 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:40 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:40 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:40 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.133608 (min) 0.11828 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0887697 (min) 0.19806 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.22948 (min) -0.209437 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: x_wind: -0.911622 (min) 0.0245287 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.6554 (min) -0.740897 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.2586 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1639 (min) 16.5347 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4012 (min) 33.0856 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -7.79927e-05 (min) 0.000203041 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:40 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:40 DEBUG opendrift:685: No elements hit coastline.
17:17:40 DEBUG opendrift:719: Lifting 55 elements to seafloor.
17:17:40 DEBUG opendrift:1636: No elements to deactivate
17:17:40 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:40 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:40 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:40 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
17:17:40 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0]
17:17:40 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3]
17:17:40 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 350. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 32. 0.]
[ 17. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:40 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:40 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:40 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:40 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:40 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.005099469129361869
17:17:40 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:40 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:40 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:40 DEBUG opendrift.models.oceandrift:548: 4 elements reached seafloor, interacting with bottom
17:17:40 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:40 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:40 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:40 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:40 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:40 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(124), np.int64(0), np.int64(11), np.int64(365), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:40 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:40 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:40 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:40 DEBUG opendrift:2034: ======================================================================
17:17:40 INFO opendrift:2035: 2025-07-02 13:16:48.563089 - step 41 of 96 - 500 active elements (0 deactivated)
17:17:40 DEBUG opendrift:2041: 0 elements scheduled.
17:17:40 DEBUG opendrift:2043: ======================================================================
17:17:40 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.711334555930556
17:17:40 DEBUG opendrift:2054: 10.5119674614764 <- longitude -> 10.808536088117789
17:17:40 DEBUG opendrift:2054: -25.12917137145996 <- z -> -0.30232637813767105
17:17:40 DEBUG opendrift:2055: ---------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:40 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:40 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 13:00:00 (before)
2025-07-02 14:00:00 (after)
17:17:42 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:42 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:42 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:42 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:42 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:42 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:42 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 48x37x7) for time after (2025-07-02 14:00:00)
17:17:42 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 13:00:00) in space (linearNDFast)
17:17:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:42 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 14:00:00) in space (linearNDFast)
17:17:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:42 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 13:00:00, weight 0.72) and
after (2025-07-02 14:00:00, weight 0.28) in time
17:17:42 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.19147494516965 degrees.
17:17:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.19147494516965 degrees.
17:17:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:42 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:42 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:42 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:42 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:42 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:42 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:42 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:42 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.131182 (min) 0.149837 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0666969 (min) 0.197551 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.252417 (min) -0.230355 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: x_wind: -0.466177 (min) 0.240168 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.53661 (min) -2.4446 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.1617 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1651 (min) 16.5967 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3937 (min) 33.0634 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -9.03795e-05 (min) 0.000186061 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:42 DEBUG opendrift:685: No elements hit coastline.
17:17:42 DEBUG opendrift:719: Lifting 64 elements to seafloor.
17:17:42 DEBUG opendrift:1636: No elements to deactivate
17:17:42 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:42 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:42 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:42 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
17:17:42 DEBUG opendrift.models.chemicaldrift:1476: old species: [2 0 0]
17:17:42 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3 3]
17:17:42 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 352. 0.]
[ 0. 0. 0. 0. 0.]
[ 9. 0. 0. 32. 0.]
[ 17. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:42 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:42 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:42 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:42 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:42 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.009143286675628073
17:17:42 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:42 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:42 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:42 DEBUG opendrift.models.oceandrift:548: 2 elements reached seafloor, interacting with bottom
17:17:42 DEBUG opendrift:719: Lifting 2 elements to seafloor.
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:42 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:42 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:42 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:42 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(123), np.int64(0), np.int64(10), np.int64(367), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:42 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:42 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:42 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:42 DEBUG opendrift:2034: ======================================================================
17:17:42 INFO opendrift:2035: 2025-07-02 13:46:48.563089 - step 42 of 96 - 500 active elements (0 deactivated)
17:17:42 DEBUG opendrift:2041: 0 elements scheduled.
17:17:42 DEBUG opendrift:2043: ======================================================================
17:17:42 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.71348979329728
17:17:42 DEBUG opendrift:2054: 10.511967461476404 <- longitude -> 10.808111258418194
17:17:42 DEBUG opendrift:2054: -25.107349395751953 <- z -> -0.24752444647201782
17:17:42 DEBUG opendrift:2055: ---------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:42 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:42 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 13:00:00 (before)
2025-07-02 14:00:00 (after)
17:17:42 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 13:00:00) in space (linearNDFast)
17:17:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:42 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 14:00:00) in space (linearNDFast)
17:17:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:42 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 13:00:00, weight 0.22) and
after (2025-07-02 14:00:00, weight 0.78) in time
17:17:42 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.191899773015315 degrees.
17:17:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.191899773015315 degrees.
17:17:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:42 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:42 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:42 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:42 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:42 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:42 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:42 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:42 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.12527 (min) 0.160184 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0454295 (min) 0.188382 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.273689 (min) -0.248855 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: x_wind: -0.747027 (min) 0.449175 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.96059 (min) -3.11975 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.1947 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1652 (min) 16.639 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4145 (min) 33.0346 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -9.15825e-05 (min) 0.000178867 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:42 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:42 DEBUG opendrift:685: No elements hit coastline.
17:17:42 DEBUG opendrift:719: Lifting 70 elements to seafloor.
17:17:42 DEBUG opendrift:1636: No elements to deactivate
17:17:42 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:42 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:42 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:42 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:17:42 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
17:17:42 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
17:17:42 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 353. 0.]
[ 0. 0. 0. 0. 0.]
[ 9. 0. 0. 32. 0.]
[ 17. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:42 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:42 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:42 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:42 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:42 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.01140585725991513
17:17:42 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:42 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:42 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:42 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:42 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:42 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:42 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:42 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:42 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:42 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(122), np.int64(0), np.int64(10), np.int64(368), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:42 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:42 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:42 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:42 DEBUG opendrift:2034: ======================================================================
17:17:42 INFO opendrift:2035: 2025-07-02 14:16:48.563089 - step 43 of 96 - 500 active elements (0 deactivated)
17:17:42 DEBUG opendrift:2041: 0 elements scheduled.
17:17:42 DEBUG opendrift:2043: ======================================================================
17:17:42 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.71605855841027
17:17:42 DEBUG opendrift:2054: 10.5119674614764 <- longitude -> 10.808274223351368
17:17:42 DEBUG opendrift:2054: -25.088199615478516 <- z -> -0.33655261276050674
17:17:42 DEBUG opendrift:2055: ---------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:42 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:42 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 14:00:00 (before)
2025-07-02 15:00:00 (after)
17:17:44 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:44 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:44 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:44 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:44 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:44 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:44 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 49x37x7) for time after (2025-07-02 15:00:00)
17:17:44 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 14:00:00) in space (linearNDFast)
17:17:44 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:44 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 15:00:00) in space (linearNDFast)
17:17:44 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:44 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 14:00:00, weight 0.72) and
after (2025-07-02 15:00:00, weight 0.28) in time
17:17:44 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:44 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.19173679816405 degrees.
17:17:44 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.19173679816405 degrees.
17:17:44 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:44 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:44 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:44 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:44 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:44 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:44 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:44 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:44 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:44 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:44 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:44 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:44 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:44 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:44 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:44 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:44 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:44 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:44 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:44 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:44 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:44 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:44 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.117704 (min) 0.177554 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0272952 (min) 0.187597 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.288569 (min) -0.264834 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: x_wind: -0.71458 (min) 0.781111 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.38694 (min) -3.25273 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.5859 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1665 (min) 16.5554 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4543 (min) 33.0005 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -8.17258e-05 (min) 0.000185218 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:44 DEBUG opendrift:685: No elements hit coastline.
17:17:44 DEBUG opendrift:719: Lifting 76 elements to seafloor.
17:17:44 DEBUG opendrift:1636: No elements to deactivate
17:17:44 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:44 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:44 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:44 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
17:17:44 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0]
17:17:44 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3]
17:17:44 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 357. 0.]
[ 0. 0. 0. 0. 0.]
[ 9. 0. 0. 32. 0.]
[ 17. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:44 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:44 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:44 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:44 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:44 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.01399892369530534
17:17:44 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:44 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:44 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:548: 4 elements reached seafloor, interacting with bottom
17:17:44 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:17:44 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:44 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:44 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:44 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:44 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(118), np.int64(0), np.int64(10), np.int64(372), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:44 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:44 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:44 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:44 DEBUG opendrift:2034: ======================================================================
17:17:44 INFO opendrift:2035: 2025-07-02 14:46:48.563089 - step 44 of 96 - 500 active elements (0 deactivated)
17:17:44 DEBUG opendrift:2041: 0 elements scheduled.
17:17:44 DEBUG opendrift:2043: ======================================================================
17:17:44 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.71810736234378
17:17:44 DEBUG opendrift:2054: 10.511967461476404 <- longitude -> 10.808291685303502
17:17:44 DEBUG opendrift:2054: -25.074386596679688 <- z -> -0.4037319743296942
17:17:44 DEBUG opendrift:2055: ---------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:44 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:44 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:44 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:44 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 14:00:00 (before)
2025-07-02 15:00:00 (after)
17:17:44 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 14:00:00) in space (linearNDFast)
17:17:44 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:44 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 15:00:00) in space (linearNDFast)
17:17:44 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:44 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 14:00:00, weight 0.22) and
after (2025-07-02 15:00:00, weight 0.78) in time
17:17:44 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:44 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.19171932809623 degrees.
17:17:44 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.19171932809623 degrees.
17:17:44 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:44 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:44 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:44 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:44 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:44 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:44 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:44 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:44 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:44 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:44 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:44 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:44 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:44 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:44 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:44 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:44 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:44 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:44 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:44 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:44 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:44 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:44 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.110855 (min) 0.201908 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.015951 (min) 0.188908 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.298529 (min) -0.278834 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: x_wind: -0.41843 (min) 0.925788 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.01909 (min) -3.0275 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.8406 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1687 (min) 16.6563 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4288 (min) 32.9641 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -9.88509e-05 (min) 0.000195965 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:44 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:44 DEBUG opendrift:685: No elements hit coastline.
17:17:44 DEBUG opendrift:719: Lifting 80 elements to seafloor.
17:17:44 DEBUG opendrift:1636: No elements to deactivate
17:17:44 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:44 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:44 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:44 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:17:44 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
17:17:44 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
17:17:44 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 358. 0.]
[ 0. 0. 0. 0. 0.]
[ 9. 0. 0. 32. 0.]
[ 17. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:44 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:44 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:44 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:44 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:44 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.011683562177501798
17:17:44 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:44 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:44 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:44 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:44 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:44 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:44 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:44 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:44 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:44 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:44 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(117), np.int64(0), np.int64(9), np.int64(374), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:44 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:44 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:44 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:44 DEBUG opendrift:2034: ======================================================================
17:17:44 INFO opendrift:2035: 2025-07-02 15:16:48.563089 - step 45 of 96 - 500 active elements (0 deactivated)
17:17:44 DEBUG opendrift:2041: 0 elements scheduled.
17:17:44 DEBUG opendrift:2043: ======================================================================
17:17:44 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.720068304683274
17:17:44 DEBUG opendrift:2054: 10.511967461476404 <- longitude -> 10.80942913745571
17:17:44 DEBUG opendrift:2054: -25.064762115478516 <- z -> -0.4490215693624247
17:17:44 DEBUG opendrift:2055: ---------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:44 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:44 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:44 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:44 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:44 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 15:00:00 (before)
2025-07-02 16:00:00 (after)
17:17:46 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:46 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:46 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:46 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:46 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:46 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:46 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 49x37x7) for time after (2025-07-02 16:00:00)
17:17:46 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 15:00:00) in space (linearNDFast)
17:17:46 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:46 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 16:00:00) in space (linearNDFast)
17:17:46 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:46 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 15:00:00, weight 0.72) and
after (2025-07-02 16:00:00, weight 0.28) in time
17:17:46 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:46 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.190581881020265 degrees.
17:17:46 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.190581881020265 degrees.
17:17:46 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:46 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:46 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:46 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:46 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:46 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:46 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:46 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:46 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:46 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:46 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:46 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:46 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:46 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:46 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:46 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:46 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:46 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:46 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:46 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:46 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:46 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:46 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.112759 (min) 0.207295 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.00947904 (min) 0.214811 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.301711 (min) -0.287745 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: x_wind: -0.385289 (min) 0.706536 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.45163 (min) -2.53143 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 26.9586 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1697 (min) 16.6408 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.2746 (min) 32.9264 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -5.41744e-05 (min) 0.000226729 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:46 DEBUG opendrift:685: No elements hit coastline.
17:17:46 DEBUG opendrift:719: Lifting 82 elements to seafloor.
17:17:46 DEBUG opendrift:1636: No elements to deactivate
17:17:46 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:46 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:46 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:46 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
17:17:46 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0]
17:17:46 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3]
17:17:46 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 362. 0.]
[ 0. 0. 0. 0. 0.]
[ 9. 0. 0. 33. 0.]
[ 17. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:46 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:46 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:46 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:46 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:46 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.008632340306945744
17:17:46 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:46 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:46 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:548: 4 elements reached seafloor, interacting with bottom
17:17:46 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:17:46 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:46 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:46 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:46 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:46 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:46 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(113), np.int64(0), np.int64(9), np.int64(378), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:46 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:46 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:46 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:46 DEBUG opendrift:2034: ======================================================================
17:17:46 INFO opendrift:2035: 2025-07-02 15:46:48.563089 - step 46 of 96 - 500 active elements (0 deactivated)
17:17:46 DEBUG opendrift:2041: 0 elements scheduled.
17:17:46 DEBUG opendrift:2043: ======================================================================
17:17:46 DEBUG opendrift:2054: 57.55898804738501 <- latitude -> 57.722181676274076
17:17:46 DEBUG opendrift:2054: 10.5119674614764 <- longitude -> 10.810897579484601
17:17:46 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.13908187504114444
17:17:46 DEBUG opendrift:2055: ---------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:46 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:46 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:46 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:46 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 15:00:00 (before)
2025-07-02 16:00:00 (after)
17:17:46 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 15:00:00) in space (linearNDFast)
17:17:46 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:46 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 16:00:00) in space (linearNDFast)
17:17:46 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:46 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 15:00:00, weight 0.22) and
after (2025-07-02 16:00:00, weight 0.78) in time
17:17:46 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:46 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.18911345418631 degrees.
17:17:46 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.18911345418631 degrees.
17:17:46 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:46 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:46 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:46 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:46 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:46 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:46 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:46 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:46 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:46 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:46 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:46 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:46 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:46 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:46 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:46 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:46 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:46 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:46 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:46 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:46 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:46 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:46 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.103442 (min) 0.206731 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0121611 (min) 0.225258 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.304178 (min) -0.286386 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: x_wind: -0.720823 (min) 0.194769 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.69158 (min) -1.72938 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 27.142 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1697 (min) 16.6372 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3417 (min) 32.8892 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -5.96714e-05 (min) 0.000206392 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:46 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:46 DEBUG opendrift:685: No elements hit coastline.
17:17:46 DEBUG opendrift:719: Lifting 43 elements to seafloor.
17:17:46 DEBUG opendrift:1636: No elements to deactivate
17:17:46 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:46 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:46 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:46 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
17:17:46 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 2 0 0 0]
17:17:46 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0 3 3 3]
17:17:46 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 366. 0.]
[ 0. 0. 0. 0. 0.]
[ 10. 0. 0. 33. 0.]
[ 17. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:46 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:46 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:46 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:46 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:46 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.005438769059275746
17:17:46 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:46 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:46 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:46 DEBUG opendrift.models.oceandrift:548: 4 elements reached seafloor, interacting with bottom
17:17:46 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:46 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:46 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:46 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:46 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:46 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:46 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(110), np.int64(0), np.int64(8), np.int64(382), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:46 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:46 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:46 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:46 DEBUG opendrift:2034: ======================================================================
17:17:46 INFO opendrift:2035: 2025-07-02 16:16:48.563089 - step 47 of 96 - 500 active elements (0 deactivated)
17:17:46 DEBUG opendrift:2041: 0 elements scheduled.
17:17:46 DEBUG opendrift:2043: ======================================================================
17:17:46 DEBUG opendrift:2054: 57.558988047385 <- latitude -> 57.72430533176434
17:17:46 DEBUG opendrift:2054: 10.5119674614764 <- longitude -> 10.809476089366349
17:17:46 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.194361668565199
17:17:46 DEBUG opendrift:2055: ---------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:46 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:46 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:46 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:46 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:46 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 16:00:00 (before)
2025-07-02 17:00:00 (after)
17:17:48 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:48 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:48 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:48 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:48 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:48 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:48 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 50x37x7) for time after (2025-07-02 17:00:00)
17:17:48 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 16:00:00) in space (linearNDFast)
17:17:48 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:48 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 17:00:00) in space (linearNDFast)
17:17:48 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:48 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 16:00:00, weight 0.72) and
after (2025-07-02 17:00:00, weight 0.28) in time
17:17:48 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:48 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.19053493156302 degrees.
17:17:48 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.19053493156302 degrees.
17:17:48 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:48 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:48 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:48 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:48 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:48 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:48 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:48 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:48 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:48 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:48 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:48 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:48 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:48 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:48 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:48 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:48 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:48 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:48 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:48 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:48 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:48 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:48 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.101332 (min) 0.207641 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0270101 (min) 0.224779 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.296427 (min) -0.274072 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: x_wind: -1.18982 (min) 0.557661 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.23017 (min) -1.41936 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 27.403 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1697 (min) 16.6726 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4245 (min) 32.8572 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -5.74541e-05 (min) 0.000211531 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:48 DEBUG opendrift:685: No elements hit coastline.
17:17:48 DEBUG opendrift:714: No elements hit seafloor.
17:17:48 DEBUG opendrift:1636: No elements to deactivate
17:17:48 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:48 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:48 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:48 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 6
17:17:48 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 3 0 0 0]
17:17:48 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 0 3 3 3]
17:17:48 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 371. 0.]
[ 0. 0. 0. 0. 0.]
[ 10. 0. 0. 33. 0.]
[ 18. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:48 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:48 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:48 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:48 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:48 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.003739261459772831
17:17:48 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:48 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:48 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:48 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:48 DEBUG opendrift.models.oceandrift:548: 5 elements reached seafloor, interacting with bottom
17:17:48 DEBUG opendrift:719: Lifting 5 elements to seafloor.
17:17:48 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:48 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:48 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:48 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:48 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:48 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:48 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:48 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:48 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:48 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:48 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:48 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(106), np.int64(0), np.int64(8), np.int64(386), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:48 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:48 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:48 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:48 DEBUG opendrift:2034: ======================================================================
17:17:48 INFO opendrift:2035: 2025-07-02 16:46:48.563089 - step 48 of 96 - 500 active elements (0 deactivated)
17:17:48 DEBUG opendrift:2041: 0 elements scheduled.
17:17:48 DEBUG opendrift:2043: ======================================================================
17:17:48 DEBUG opendrift:2054: 57.558988047384986 <- latitude -> 57.72698493851228
17:17:48 DEBUG opendrift:2054: 10.5119674614764 <- longitude -> 10.809445619577069
17:17:48 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.2034383387904276
17:17:48 DEBUG opendrift:2055: ---------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:48 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:48 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:48 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:48 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 16:00:00 (before)
2025-07-02 17:00:00 (after)
17:17:48 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 16:00:00) in space (linearNDFast)
17:17:48 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:48 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 17:00:00) in space (linearNDFast)
17:17:48 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:48 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 16:00:00, weight 0.22) and
after (2025-07-02 17:00:00, weight 0.78) in time
17:17:48 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:48 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.1905654141055 degrees.
17:17:48 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.1905654141055 degrees.
17:17:48 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:48 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:48 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:48 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:48 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:48 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:48 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:48 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:48 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:48 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:48 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:48 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:48 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:48 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:48 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:48 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:48 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:48 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:48 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:48 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:48 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:48 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:48 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.100406 (min) 0.170633 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0582157 (min) 0.193373 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.279847 (min) -0.25448 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: x_wind: -1.23239 (min) 1.51465 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.38162 (min) -1.52017 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 27.4355 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1697 (min) 16.6979 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3596 (min) 32.8291 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -4.81577e-05 (min) 0.000224832 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:48 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:48 DEBUG opendrift:685: No elements hit coastline.
17:17:48 DEBUG opendrift:714: No elements hit seafloor.
17:17:48 DEBUG opendrift:1636: No elements to deactivate
17:17:48 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:48 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:48 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:48 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
17:17:48 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:48 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.0055619149532093095
17:17:48 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:48 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:48 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:48 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:48 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:48 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:48 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:48 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:48 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:48 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:48 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:48 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:48 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:48 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:48 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:48 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:48 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(106), np.int64(0), np.int64(8), np.int64(386), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:48 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:48 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:48 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:48 DEBUG opendrift:2034: ======================================================================
17:17:48 INFO opendrift:2035: 2025-07-02 17:16:48.563089 - step 49 of 96 - 500 active elements (0 deactivated)
17:17:48 DEBUG opendrift:2041: 0 elements scheduled.
17:17:48 DEBUG opendrift:2043: ======================================================================
17:17:48 DEBUG opendrift:2054: 57.558988047384986 <- latitude -> 57.73001150006917
17:17:48 DEBUG opendrift:2054: 10.5119674614764 <- longitude -> 10.807136320989724
17:17:48 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.3414900370386903
17:17:48 DEBUG opendrift:2055: ---------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:48 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:48 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:48 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:48 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:48 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 17:00:00 (before)
2025-07-02 18:00:00 (after)
17:17:50 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:50 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:50 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:50 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:50 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:50 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:50 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 50x37x7) for time after (2025-07-02 18:00:00)
17:17:50 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 17:00:00) in space (linearNDFast)
17:17:50 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:50 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 18:00:00) in space (linearNDFast)
17:17:50 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:50 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 17:00:00, weight 0.72) and
after (2025-07-02 18:00:00, weight 0.28) in time
17:17:50 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:50 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.192874709542856 degrees.
17:17:50 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.192874709542856 degrees.
17:17:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:50 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:50 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:50 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:50 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:50 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:50 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:50 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:50 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:50 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:50 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:50 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:50 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:50 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:50 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0981978 (min) 0.139578 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0903924 (min) 0.188957 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.256152 (min) -0.23058 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: x_wind: -0.424013 (min) 2.31364 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.58216 (min) -1.35592 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 27.513 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1711 (min) 16.7175 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.428 (min) 32.8087 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -3.67944e-05 (min) 0.000218223 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:50 DEBUG opendrift:685: No elements hit coastline.
17:17:50 DEBUG opendrift:714: No elements hit seafloor.
17:17:50 DEBUG opendrift:1636: No elements to deactivate
17:17:50 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:50 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:50 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:50 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:17:50 DEBUG opendrift.models.chemicaldrift:1476: old species: [3]
17:17:50 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
17:17:50 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 371. 0.]
[ 0. 0. 0. 0. 0.]
[ 10. 0. 0. 33. 0.]
[ 19. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:50 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:50 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:50 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:50 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:50 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.00821129792540517
17:17:50 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:50 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:50 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:50 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:50 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:50 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:50 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:50 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(107), np.int64(0), np.int64(8), np.int64(385), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:50 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:50 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:50 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:50 DEBUG opendrift:2034: ======================================================================
17:17:50 INFO opendrift:2035: 2025-07-02 17:46:48.563089 - step 50 of 96 - 500 active elements (0 deactivated)
17:17:50 DEBUG opendrift:2041: 0 elements scheduled.
17:17:50 DEBUG opendrift:2043: ======================================================================
17:17:50 DEBUG opendrift:2054: 57.55898804738498 <- latitude -> 57.73306540495897
17:17:50 DEBUG opendrift:2054: 10.5119674614764 <- longitude -> 10.804951900280127
17:17:50 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.29727779276590477
17:17:50 DEBUG opendrift:2055: ---------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:50 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:50 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 17:00:00 (before)
2025-07-02 18:00:00 (after)
17:17:50 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 17:00:00) in space (linearNDFast)
17:17:50 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:50 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 18:00:00) in space (linearNDFast)
17:17:50 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:50 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 17:00:00, weight 0.22) and
after (2025-07-02 18:00:00, weight 0.78) in time
17:17:50 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:50 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.195059133482395 degrees.
17:17:50 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.195059133482395 degrees.
17:17:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:50 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:50 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:50 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:50 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:50 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:50 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:50 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:50 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:50 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:50 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:50 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:50 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:50 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:50 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.100558 (min) 0.105925 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.122253 (min) 0.174918 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.226873 (min) -0.203435 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.376792 (min) 3.1234 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.88733 (min) -1.0072 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 27.6755 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1736 (min) 16.6993 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3624 (min) 32.9515 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -3.41829e-05 (min) 0.000235024 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:50 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:50 DEBUG opendrift:685: No elements hit coastline.
17:17:50 DEBUG opendrift:714: No elements hit seafloor.
17:17:50 DEBUG opendrift:1636: No elements to deactivate
17:17:50 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:50 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:50 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:50 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:17:50 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
17:17:50 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
17:17:50 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 372. 0.]
[ 0. 0. 0. 0. 0.]
[ 10. 0. 0. 33. 0.]
[ 19. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:50 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:50 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:50 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:50 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:50 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.010630068313546749
17:17:50 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:50 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:50 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:50 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:50 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:50 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:50 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:50 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:50 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:50 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:50 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(106), np.int64(0), np.int64(6), np.int64(388), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:50 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:50 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:50 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:50 DEBUG opendrift:2034: ======================================================================
17:17:50 INFO opendrift:2035: 2025-07-02 18:16:48.563089 - step 51 of 96 - 500 active elements (0 deactivated)
17:17:50 DEBUG opendrift:2041: 0 elements scheduled.
17:17:50 DEBUG opendrift:2043: ======================================================================
17:17:50 DEBUG opendrift:2054: 57.55898804738497 <- latitude -> 57.73589240842631
17:17:50 DEBUG opendrift:2054: 10.5119674614764 <- longitude -> 10.802584773548029
17:17:50 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.27029607408979656
17:17:50 DEBUG opendrift:2055: ---------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:50 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:50 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 18:00:00 (before)
2025-07-02 19:00:00 (after)
17:17:52 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:52 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:52 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:52 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:52 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:52 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:52 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 50x37x7) for time after (2025-07-02 19:00:00)
17:17:52 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 18:00:00) in space (linearNDFast)
17:17:52 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:52 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 19:00:00) in space (linearNDFast)
17:17:52 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:52 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 18:00:00, weight 0.72) and
after (2025-07-02 19:00:00, weight 0.28) in time
17:17:52 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:52 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.19742625030366 degrees.
17:17:52 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.19742625030366 degrees.
17:17:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:52 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:52 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:52 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:52 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:52 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:52 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:52 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:52 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:52 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:52 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:52 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:52 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:52 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:52 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.100667 (min) 0.0790221 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.151273 (min) 0.153892 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.191868 (min) -0.174991 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.79997 (min) 4.02351 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.13696 (min) -0.897382 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 27.5069 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1759 (min) 16.703 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4324 (min) 33.0204 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -2.37276e-05 (min) 0.000256269 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:52 DEBUG opendrift:685: No elements hit coastline.
17:17:52 DEBUG opendrift:714: No elements hit seafloor.
17:17:52 DEBUG opendrift:1636: No elements to deactivate
17:17:52 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:52 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:52 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:52 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
17:17:52 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:52 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.014005815148674173
17:17:52 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:52 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:52 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:52 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:52 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:52 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:52 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(106), np.int64(0), np.int64(6), np.int64(388), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:52 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:52 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:52 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:52 DEBUG opendrift:2034: ======================================================================
17:17:52 INFO opendrift:2035: 2025-07-02 18:46:48.563089 - step 52 of 96 - 500 active elements (0 deactivated)
17:17:52 DEBUG opendrift:2041: 0 elements scheduled.
17:17:52 DEBUG opendrift:2043: ======================================================================
17:17:52 DEBUG opendrift:2054: 57.55898804738497 <- latitude -> 57.73837959742021
17:17:52 DEBUG opendrift:2054: 10.5119674614764 <- longitude -> 10.799877916436799
17:17:52 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.08515565870041591
17:17:52 DEBUG opendrift:2055: ---------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:52 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:52 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 18:00:00 (before)
2025-07-02 19:00:00 (after)
17:17:52 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 18:00:00) in space (linearNDFast)
17:17:52 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:52 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 19:00:00) in space (linearNDFast)
17:17:52 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:52 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 18:00:00, weight 0.22) and
after (2025-07-02 19:00:00, weight 0.78) in time
17:17:52 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:52 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.2001331070425 degrees.
17:17:52 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.2001331070425 degrees.
17:17:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:52 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:52 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:52 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:52 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:52 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:52 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:52 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:52 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:52 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:52 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:52 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:52 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:52 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:52 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0996855 (min) 0.0578425 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.169265 (min) 0.147645 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.152368 (min) -0.145228 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: x_wind: 3.42786 (min) 4.89727 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.14855 (min) -0.726924 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 27.3361 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1782 (min) 16.6397 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3813 (min) 33.0621 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -2.33773e-05 (min) 0.0002743 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:52 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:52 DEBUG opendrift:685: No elements hit coastline.
17:17:52 DEBUG opendrift:714: No elements hit seafloor.
17:17:52 DEBUG opendrift:1636: No elements to deactivate
17:17:52 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:52 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:52 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:52 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
17:17:52 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 3]
17:17:52 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 0]
17:17:52 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 376. 0.]
[ 0. 0. 0. 0. 0.]
[ 10. 0. 0. 35. 0.]
[ 20. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:52 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:52 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:52 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:52 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:52 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.020528799946337935
17:17:52 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:52 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:52 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:548: 4 elements reached seafloor, interacting with bottom
17:17:52 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:52 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:52 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:52 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:52 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:52 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:52 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(103), np.int64(0), np.int64(6), np.int64(391), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:52 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:52 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:52 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:52 DEBUG opendrift:2034: ======================================================================
17:17:52 INFO opendrift:2035: 2025-07-02 19:16:48.563089 - step 53 of 96 - 500 active elements (0 deactivated)
17:17:52 DEBUG opendrift:2041: 0 elements scheduled.
17:17:52 DEBUG opendrift:2043: ======================================================================
17:17:52 DEBUG opendrift:2054: 57.55898804738497 <- latitude -> 57.740597520569686
17:17:52 DEBUG opendrift:2054: 10.511967461476404 <- longitude -> 10.798530568093623
17:17:52 DEBUG opendrift:2054: -25.06081199645996 <- z -> 0.0
17:17:52 DEBUG opendrift:2055: ---------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:52 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:52 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 19:00:00 (before)
2025-07-02 20:00:00 (after)
17:17:54 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:54 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:54 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:54 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:54 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:54 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:54 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 50x37x7) for time after (2025-07-02 20:00:00)
17:17:54 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 19:00:00) in space (linearNDFast)
17:17:54 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:54 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 20:00:00) in space (linearNDFast)
17:17:54 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:54 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 19:00:00, weight 0.72) and
after (2025-07-02 20:00:00, weight 0.28) in time
17:17:54 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:54 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:17:54 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:17:54 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:54 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:54 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:54 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:54 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:54 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:54 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:54 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:54 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:54 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:54 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:54 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:54 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:54 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:54 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:54 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:54 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:54 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:54 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:54 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:54 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:54 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:54 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0961469 (min) 0.0607292 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.190102 (min) 0.144583 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.121963 (min) -0.109828 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.4508 (min) 5.457 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.5975 (min) -1.25843 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 27.3767 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1792 (min) 16.6144 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3835 (min) 33.086 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -1.789e-05 (min) 0.00027638 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:54 DEBUG opendrift:685: No elements hit coastline.
17:17:54 DEBUG opendrift:714: No elements hit seafloor.
17:17:54 DEBUG opendrift:1636: No elements to deactivate
17:17:54 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:54 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:54 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:54 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 6
17:17:54 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0]
17:17:54 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3]
17:17:54 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 382. 0.]
[ 0. 0. 0. 0. 0.]
[ 10. 0. 0. 35. 0.]
[ 20. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:54 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:54 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:54 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:54 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:54 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.02889211876944182
17:17:54 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:54 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:54 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:54 DEBUG opendrift.models.oceandrift:548: 6 elements reached seafloor, interacting with bottom
17:17:54 DEBUG opendrift:719: Lifting 6 elements to seafloor.
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:54 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:54 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:54 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:54 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(97), np.int64(0), np.int64(6), np.int64(397), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:54 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:54 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:54 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:54 DEBUG opendrift:2034: ======================================================================
17:17:54 INFO opendrift:2035: 2025-07-02 19:46:48.563089 - step 54 of 96 - 500 active elements (0 deactivated)
17:17:54 DEBUG opendrift:2041: 0 elements scheduled.
17:17:54 DEBUG opendrift:2043: ======================================================================
17:17:54 DEBUG opendrift:2054: 57.55898804738497 <- latitude -> 57.742662223463256
17:17:54 DEBUG opendrift:2054: 10.511967461476404 <- longitude -> 10.798530568093623
17:17:54 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.17687873613317973
17:17:54 DEBUG opendrift:2055: ---------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:54 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:54 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:54 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:54 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 19:00:00 (before)
2025-07-02 20:00:00 (after)
17:17:54 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 19:00:00) in space (linearNDFast)
17:17:54 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:54 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 20:00:00) in space (linearNDFast)
17:17:54 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:54 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 19:00:00, weight 0.22) and
after (2025-07-02 20:00:00, weight 0.78) in time
17:17:54 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:54 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:17:54 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:17:54 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:54 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:54 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:54 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:54 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:54 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:54 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:54 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:54 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:54 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:54 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:54 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:54 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:54 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:54 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:54 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:54 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:54 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:54 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:54 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:54 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:54 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:54 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0899405 (min) 0.0711461 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.190279 (min) 0.147244 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0913998 (min) -0.0738274 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.22885 (min) 6.16697 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.36807 (min) -2.45252 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 27.2532 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1794 (min) 16.675 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3509 (min) 33.1177 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -2.44541e-05 (min) 0.000245165 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:54 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:54 DEBUG opendrift:685: No elements hit coastline.
17:17:54 DEBUG opendrift:714: No elements hit seafloor.
17:17:54 DEBUG opendrift:1636: No elements to deactivate
17:17:54 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:54 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:54 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:54 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:17:54 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
17:17:54 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
17:17:54 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 383. 0.]
[ 0. 0. 0. 0. 0.]
[ 10. 0. 0. 35. 0.]
[ 20. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:54 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:54 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:54 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:54 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:54 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.03663344332574521
17:17:54 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:54 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:54 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:54 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:54 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:17:54 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:17:54 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:54 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:54 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:54 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:54 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:54 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:54 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(96), np.int64(0), np.int64(5), np.int64(399), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:54 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:54 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:54 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:54 DEBUG opendrift:2034: ======================================================================
17:17:54 INFO opendrift:2035: 2025-07-02 20:16:48.563089 - step 55 of 96 - 500 active elements (0 deactivated)
17:17:54 DEBUG opendrift:2041: 0 elements scheduled.
17:17:54 DEBUG opendrift:2043: ======================================================================
17:17:54 DEBUG opendrift:2054: 57.55898804738497 <- latitude -> 57.74266222346326
17:17:54 DEBUG opendrift:2054: 10.511967461476404 <- longitude -> 10.798530568093623
17:17:54 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.09137237454104286
17:17:54 DEBUG opendrift:2055: ---------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:54 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:54 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:54 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:54 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:54 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 20:00:00 (before)
2025-07-02 21:00:00 (after)
17:17:56 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:56 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:56 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:56 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:56 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:56 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:56 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 50x37x7) for time after (2025-07-02 21:00:00)
17:17:56 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 20:00:00) in space (linearNDFast)
17:17:56 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:56 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 21:00:00) in space (linearNDFast)
17:17:56 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:56 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 20:00:00, weight 0.72) and
after (2025-07-02 21:00:00, weight 0.28) in time
17:17:56 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:56 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:17:56 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:17:56 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:56 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:56 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:56 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:56 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:56 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:56 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:56 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:56 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:56 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:56 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:56 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:56 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:56 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:56 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:56 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:56 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:56 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:56 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:56 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:56 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:56 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:56 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0767385 (min) 0.0847292 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.167412 (min) 0.161751 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0680453 (min) -0.0445482 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.17162 (min) 5.68808 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.25552 (min) -2.98106 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 27.4263 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1794 (min) 16.6409 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3866 (min) 33.12 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -2.79618e-05 (min) 0.000198636 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:56 DEBUG opendrift:685: No elements hit coastline.
17:17:56 DEBUG opendrift:714: No elements hit seafloor.
17:17:56 DEBUG opendrift:1636: No elements to deactivate
17:17:56 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:56 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:56 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:56 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
17:17:56 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0]
17:17:56 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3]
17:17:56 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 387. 0.]
[ 0. 0. 0. 0. 0.]
[ 10. 0. 0. 36. 0.]
[ 20. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:56 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:56 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:56 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:56 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:56 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.029805453463958995
17:17:56 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:56 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:56 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:56 DEBUG opendrift.models.oceandrift:548: 4 elements reached seafloor, interacting with bottom
17:17:56 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:56 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:56 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:56 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:56 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:56 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(92), np.int64(0), np.int64(5), np.int64(403), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:56 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:56 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:56 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:56 DEBUG opendrift:2034: ======================================================================
17:17:56 INFO opendrift:2035: 2025-07-02 20:46:48.563089 - step 56 of 96 - 500 active elements (0 deactivated)
17:17:56 DEBUG opendrift:2041: 0 elements scheduled.
17:17:56 DEBUG opendrift:2043: ======================================================================
17:17:56 DEBUG opendrift:2054: 57.55898804738497 <- latitude -> 57.74266222346326
17:17:56 DEBUG opendrift:2054: 10.511967461476408 <- longitude -> 10.798530568093623
17:17:56 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.23734599870514772
17:17:56 DEBUG opendrift:2055: ---------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:56 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:56 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:56 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:56 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 20:00:00 (before)
2025-07-02 21:00:00 (after)
17:17:56 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 20:00:00) in space (linearNDFast)
17:17:56 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:56 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 21:00:00) in space (linearNDFast)
17:17:56 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:56 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 20:00:00, weight 0.22) and
after (2025-07-02 21:00:00, weight 0.78) in time
17:17:56 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:56 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:17:56 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:17:56 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:56 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:56 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:56 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:56 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:56 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:56 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:56 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:56 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:56 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:56 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:56 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:56 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:56 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:56 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:56 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:56 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:56 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:56 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:56 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:56 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:56 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:56 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0664088 (min) 0.0821467 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.179983 (min) 0.194136 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0506832 (min) -0.0205437 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.56365 (min) 4.25439 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.66471 (min) -1.51074 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 27.563 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1794 (min) 16.5335 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3109 (min) 33.1032 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -3.09252e-05 (min) 0.000187482 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:56 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:56 DEBUG opendrift:685: No elements hit coastline.
17:17:56 DEBUG opendrift:714: No elements hit seafloor.
17:17:56 DEBUG opendrift:1636: No elements to deactivate
17:17:56 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:56 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:56 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:56 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
17:17:56 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 3]
17:17:56 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 0]
17:17:56 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 387. 0.]
[ 0. 0. 0. 0. 0.]
[ 10. 0. 0. 36. 0.]
[ 22. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:56 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:56 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:56 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:56 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:56 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.01597979288392503
17:17:56 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:56 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:56 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:56 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:56 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:56 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:56 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:56 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(94), np.int64(0), np.int64(5), np.int64(401), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:56 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:56 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:56 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:56 DEBUG opendrift:2034: ======================================================================
17:17:56 INFO opendrift:2035: 2025-07-02 21:16:48.563089 - step 57 of 96 - 500 active elements (0 deactivated)
17:17:56 DEBUG opendrift:2041: 0 elements scheduled.
17:17:56 DEBUG opendrift:2043: ======================================================================
17:17:56 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.74266222346327
17:17:56 DEBUG opendrift:2054: 10.511967461476402 <- longitude -> 10.798530568093623
17:17:56 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.34291386846972116
17:17:56 DEBUG opendrift:2055: ---------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:56 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:56 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:56 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:56 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:56 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 21:00:00 (before)
2025-07-02 22:00:00 (after)
17:17:58 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:17:58 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:17:58 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:17:58 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:17:58 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:17:58 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:17:58 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 50x37x7) for time after (2025-07-02 22:00:00)
17:17:58 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 21:00:00) in space (linearNDFast)
17:17:58 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:58 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 22:00:00) in space (linearNDFast)
17:17:58 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:58 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 21:00:00, weight 0.72) and
after (2025-07-02 22:00:00, weight 0.28) in time
17:17:58 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:58 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:17:58 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:17:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:58 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:58 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:58 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:58 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:58 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:58 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:58 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:58 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:58 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:58 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:58 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:58 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.096091 (min) 0.0977314 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.11778 (min) 0.252188 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.045075 (min) -0.0139114 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: x_wind: -0.547328 (min) 2.54379 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.4679 (min) -0.145896 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 27.8093 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1794 (min) 16.5126 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3111 (min) 33.0509 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -9.36787e-05 (min) 0.000164226 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:58 DEBUG opendrift:685: No elements hit coastline.
17:17:58 DEBUG opendrift:714: No elements hit seafloor.
17:17:58 DEBUG opendrift:1636: No elements to deactivate
17:17:58 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:58 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:58 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:58 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
17:17:58 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0]
17:17:58 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3]
17:17:58 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 389. 0.]
[ 0. 0. 0. 0. 0.]
[ 10. 0. 0. 36. 0.]
[ 22. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:58 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:58 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:58 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:58 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:58 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.005272772235391247
17:17:58 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:58 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:58 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:58 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:58 DEBUG opendrift.models.oceandrift:548: 2 elements reached seafloor, interacting with bottom
17:17:58 DEBUG opendrift:719: Lifting 2 elements to seafloor.
17:17:58 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:58 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:58 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:58 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:58 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:58 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:58 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:17:58 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:58 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:58 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:58 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:58 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(92), np.int64(0), np.int64(5), np.int64(403), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:58 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:58 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:58 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:58 DEBUG opendrift:2034: ======================================================================
17:17:58 INFO opendrift:2035: 2025-07-02 21:46:48.563089 - step 58 of 96 - 500 active elements (0 deactivated)
17:17:58 DEBUG opendrift:2041: 0 elements scheduled.
17:17:58 DEBUG opendrift:2043: ======================================================================
17:17:58 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.74540118804885
17:17:58 DEBUG opendrift:2054: 10.511967461476402 <- longitude -> 10.798530568093623
17:17:58 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.36444259506827026
17:17:58 DEBUG opendrift:2055: ---------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:58 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:58 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 21:00:00 (before)
2025-07-02 22:00:00 (after)
17:17:58 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 21:00:00) in space (linearNDFast)
17:17:58 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:58 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 22:00:00) in space (linearNDFast)
17:17:58 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:17:58 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 21:00:00, weight 0.22) and
after (2025-07-02 22:00:00, weight 0.78) in time
17:17:58 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:17:58 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:17:58 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:17:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:17:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:17:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:58 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:17:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:58 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:17:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:17:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:58 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:17:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:17:58 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:17:58 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:17:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:17:58 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:17:58 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:17:58 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:17:58 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:17:58 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:17:58 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:17:58 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.120454 (min) 0.116102 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.11459 (min) 0.302214 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0519248 (min) -0.0209114 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: x_wind: -2.29853 (min) 0.932309 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.390153 (min) 1.19104 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 28.4166 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1794 (min) 16.494 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3087 (min) 32.9706 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000194735 (min) 0.000152468 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:17:58 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:17:58 DEBUG opendrift:685: No elements hit coastline.
17:17:58 DEBUG opendrift:719: Lifting 2 elements to seafloor.
17:17:58 DEBUG opendrift:1636: No elements to deactivate
17:17:58 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:17:58 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:17:58 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:17:58 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
17:17:58 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0]
17:17:58 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3]
17:17:58 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 392. 0.]
[ 0. 0. 0. 0. 0.]
[ 10. 0. 0. 36. 0.]
[ 22. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:17:58 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:58 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:58 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:17:58 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:17:58 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.003904024830009412
17:17:58 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:17:58 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:17:58 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:17:58 DEBUG opendrift.models.oceandrift:548: 3 elements reached seafloor, interacting with bottom
17:17:58 DEBUG opendrift:719: Lifting 3 elements to seafloor.
17:17:58 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:58 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:58 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:58 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:58 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:17:58 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:17:58 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:17:58 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:17:58 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:17:58 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(89), np.int64(0), np.int64(5), np.int64(406), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:17:58 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:17:58 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:17:58 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:17:58 DEBUG opendrift:2034: ======================================================================
17:17:58 INFO opendrift:2035: 2025-07-02 22:16:48.563089 - step 59 of 96 - 500 active elements (0 deactivated)
17:17:58 DEBUG opendrift:2041: 0 elements scheduled.
17:17:58 DEBUG opendrift:2043: ======================================================================
17:17:58 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.74981626203139
17:17:58 DEBUG opendrift:2054: 10.511967461476399 <- longitude -> 10.798530568093623
17:17:58 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.281240987601704
17:17:58 DEBUG opendrift:2055: ---------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:17:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:17:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:17:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:17:58 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:17:58 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 22:00:00 (before)
2025-07-02 23:00:00 (after)
17:18:00 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:00 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:00 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:00 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:00 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:00 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:00 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 51x37x7) for time after (2025-07-02 23:00:00)
17:18:00 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 22:00:00) in space (linearNDFast)
17:18:00 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:00 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 23:00:00) in space (linearNDFast)
17:18:00 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:00 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 22:00:00, weight 0.72) and
after (2025-07-02 23:00:00, weight 0.28) in time
17:18:00 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:00 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:18:00 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:18:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:00 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:00 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:00 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:00 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:00 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:00 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:00 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:00 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:00 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:00 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:00 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:00 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.142184 (min) 0.137671 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0803169 (min) 0.328141 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0630278 (min) -0.0321163 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: x_wind: -2.88185 (min) -0.178355 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.71101 (min) 3.30574 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 29.348 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1794 (min) 16.4772 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3091 (min) 32.8658 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000298008 (min) 0.000127533 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:00 DEBUG opendrift:685: No elements hit coastline.
17:18:00 DEBUG opendrift:719: Lifting 5 elements to seafloor.
17:18:00 DEBUG opendrift:1636: No elements to deactivate
17:18:00 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:00 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:00 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:00 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
17:18:00 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0]
17:18:00 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3]
17:18:00 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 395. 0.]
[ 0. 0. 0. 0. 0.]
[ 10. 0. 0. 36. 0.]
[ 22. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:00 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:00 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:00 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:00 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:00 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.008658175313549118
17:18:00 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:00 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:00 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:00 DEBUG opendrift.models.oceandrift:548: 3 elements reached seafloor, interacting with bottom
17:18:00 DEBUG opendrift:719: Lifting 3 elements to seafloor.
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:00 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:00 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:00 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:00 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(86), np.int64(0), np.int64(5), np.int64(409), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:00 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:00 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:00 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:00 DEBUG opendrift:2034: ======================================================================
17:18:00 INFO opendrift:2035: 2025-07-02 22:46:48.563089 - step 60 of 96 - 500 active elements (0 deactivated)
17:18:00 DEBUG opendrift:2041: 0 elements scheduled.
17:18:00 DEBUG opendrift:2043: ======================================================================
17:18:00 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.75511957717272
17:18:00 DEBUG opendrift:2054: 10.511967461476399 <- longitude -> 10.79853056809362
17:18:00 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.5019610958495989
17:18:00 DEBUG opendrift:2055: ---------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:00 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:00 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 22:00:00 (before)
2025-07-02 23:00:00 (after)
17:18:00 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 22:00:00) in space (linearNDFast)
17:18:00 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:00 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-02 23:00:00) in space (linearNDFast)
17:18:00 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:00 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 22:00:00, weight 0.22) and
after (2025-07-02 23:00:00, weight 0.78) in time
17:18:00 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:00 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:00 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:00 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:00 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:00 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:00 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:00 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:00 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:00 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:00 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:00 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:00 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:00 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:00 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.151984 (min) 0.183442 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0410624 (min) 0.379149 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0771291 (min) -0.0466208 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: x_wind: -2.43131 (min) -1.01112 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: y_wind: 3.97735 (min) 5.99935 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 30.4485 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1794 (min) 16.4596 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4351 (min) 32.8156 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00040671 (min) 0.000100969 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:00 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:00 DEBUG opendrift:685: No elements hit coastline.
17:18:00 DEBUG opendrift:719: Lifting 9 elements to seafloor.
17:18:00 DEBUG opendrift:1636: No elements to deactivate
17:18:00 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:00 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:00 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:00 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
17:18:00 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0]
17:18:00 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3]
17:18:00 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 397. 0.]
[ 0. 0. 0. 0. 0.]
[ 10. 0. 0. 36. 0.]
[ 22. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:00 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:00 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:00 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:00 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:00 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.027300607870017105
17:18:00 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:00 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:00 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:00 DEBUG opendrift.models.oceandrift:548: 2 elements reached seafloor, interacting with bottom
17:18:00 DEBUG opendrift:719: Lifting 2 elements to seafloor.
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:18:00 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:00 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:00 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:00 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:00 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:00 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(84), np.int64(0), np.int64(4), np.int64(412), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:00 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:00 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:00 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:00 DEBUG opendrift:2034: ======================================================================
17:18:00 INFO opendrift:2035: 2025-07-02 23:16:48.563089 - step 61 of 96 - 500 active elements (0 deactivated)
17:18:00 DEBUG opendrift:2041: 0 elements scheduled.
17:18:00 DEBUG opendrift:2043: ======================================================================
17:18:00 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.761247266960375
17:18:00 DEBUG opendrift:2054: 10.511967461476399 <- longitude -> 10.79853056809362
17:18:00 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.3862063669071912
17:18:00 DEBUG opendrift:2055: ---------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:00 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:00 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 23:00:00 (before)
2025-07-03 00:00:00 (after)
17:18:02 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:02 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:02 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:02 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:02 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:02 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:02 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 52x37x7) for time after (2025-07-03 00:00:00)
17:18:02 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 23:00:00) in space (linearNDFast)
17:18:02 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:02 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 00:00:00) in space (linearNDFast)
17:18:02 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:02 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 23:00:00, weight 0.72) and
after (2025-07-03 00:00:00, weight 0.28) in time
17:18:02 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:02 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:02 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:02 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:02 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:02 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:02 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:02 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:02 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:02 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:02 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:02 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:02 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:02 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:02 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:02 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:02 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:02 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:02 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:02 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:02 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:02 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:02 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:02 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:02 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:02 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:02 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:02 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:02 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:02 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.155977 (min) 0.233211 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.00635217 (min) 0.437788 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0974336 (min) -0.0685108 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.0896365 (min) 0.575142 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: y_wind: 3.26549 (min) 4.92955 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 33.7642 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1794 (min) 16.4408 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.315 (min) 33.0283 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000511022 (min) 7.65038e-05 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:02 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:02 DEBUG opendrift:685: No elements hit coastline.
17:18:02 DEBUG opendrift:719: Lifting 15 elements to seafloor.
17:18:03 DEBUG opendrift:1636: No elements to deactivate
17:18:03 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:03 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:03 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:03 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:18:03 DEBUG opendrift.models.chemicaldrift:1476: old species: [3]
17:18:03 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
17:18:03 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 397. 0.]
[ 0. 0. 0. 0. 0.]
[ 10. 0. 0. 37. 0.]
[ 23. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:03 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:03 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:03 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:03 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:03 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.017670098345515105
17:18:03 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:03 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:03 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:18:03 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:03 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:03 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:03 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:03 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(85), np.int64(0), np.int64(3), np.int64(412), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:03 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:03 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:03 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:03 DEBUG opendrift:2034: ======================================================================
17:18:03 INFO opendrift:2035: 2025-07-02 23:46:48.563089 - step 62 of 96 - 500 active elements (0 deactivated)
17:18:03 DEBUG opendrift:2041: 0 elements scheduled.
17:18:03 DEBUG opendrift:2043: ======================================================================
17:18:03 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.767622222357815
17:18:03 DEBUG opendrift:2054: 10.511967461476399 <- longitude -> 10.79853056809362
17:18:03 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.3698491483353051
17:18:03 DEBUG opendrift:2055: ---------------------------------
17:18:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:03 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:03 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-02 23:00:00 (before)
2025-07-03 00:00:00 (after)
17:18:03 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-02 23:00:00) in space (linearNDFast)
17:18:03 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:03 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 00:00:00) in space (linearNDFast)
17:18:03 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:03 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-02 23:00:00, weight 0.22) and
after (2025-07-03 00:00:00, weight 0.78) in time
17:18:03 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:03 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:18:03 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:18:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:03 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:03 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:03 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:03 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:03 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:03 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:03 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:03 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:03 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:03 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:03 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:03 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:03 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.157789 (min) 0.221739 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0191627 (min) 0.47678 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.122592 (min) -0.0944085 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: x_wind: 3.69765 (min) 4.42375 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.0476998 (min) 1.09713 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 39.6266 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1794 (min) 16.4357 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3184 (min) 33.3253 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00063658 (min) 5.5188e-05 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:03 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:03 DEBUG opendrift:685: No elements hit coastline.
17:18:03 DEBUG opendrift:719: Lifting 18 elements to seafloor.
17:18:03 DEBUG opendrift:1636: No elements to deactivate
17:18:03 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:03 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:03 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:03 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
17:18:03 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 2]
17:18:03 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0]
17:18:03 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 398. 0.]
[ 0. 0. 0. 0. 0.]
[ 11. 0. 0. 38. 0.]
[ 23. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:03 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:03 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:03 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:03 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:03 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.01433975231338966
17:18:03 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:03 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:03 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:18:03 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:18:03 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:03 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:03 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:03 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:03 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:03 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(85), np.int64(0), np.int64(2), np.int64(413), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:03 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:03 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:03 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:03 DEBUG opendrift:2034: ======================================================================
17:18:03 INFO opendrift:2035: 2025-07-03 00:16:48.563089 - step 63 of 96 - 500 active elements (0 deactivated)
17:18:03 DEBUG opendrift:2041: 0 elements scheduled.
17:18:03 DEBUG opendrift:2043: ======================================================================
17:18:03 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.77464257065809
17:18:03 DEBUG opendrift:2054: 10.511967461476399 <- longitude -> 10.798530568093616
17:18:03 DEBUG opendrift:2054: -25.06081199645996 <- z -> -0.556851210905611
17:18:03 DEBUG opendrift:2055: ---------------------------------
17:18:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:03 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:03 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 00:00:00 (before)
2025-07-03 01:00:00 (after)
17:18:05 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:05 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:05 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:05 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:05 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:05 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:05 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 53x38x7) for time after (2025-07-03 01:00:00)
17:18:05 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 00:00:00) in space (linearNDFast)
17:18:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:05 DEBUG opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
17:18:05 DEBUG opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
17:18:05 DEBUG opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
17:18:05 DEBUG opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
17:18:05 DEBUG opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
17:18:05 DEBUG opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
17:18:05 DEBUG opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
17:18:05 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 01:00:00) in space (linearNDFast)
17:18:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:05 DEBUG opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
17:18:05 DEBUG opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
17:18:05 DEBUG opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
17:18:05 DEBUG opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
17:18:05 DEBUG opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
17:18:05 DEBUG opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
17:18:05 DEBUG opendrift.readers.interpolation.interpolators:131: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
17:18:05 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 00:00:00, weight 0.72) and
after (2025-07-03 01:00:00, weight 0.28) in time
17:18:05 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:05 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:05 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:05 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:05 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:05 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:05 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:05 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:05 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.150317 (min) 0.253213 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0144023 (min) 0.478341 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.146816 (min) -0.119947 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.47158 (min) 5.78714 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.06638 (min) -0.14334 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 47.1933 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1794 (min) 16.387 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.596 (min) 32.9803 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00080459 (min) 0.000363414 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:05 DEBUG opendrift:685: No elements hit coastline.
17:18:05 DEBUG opendrift:719: Lifting 25 elements to seafloor.
17:18:05 DEBUG opendrift:1636: No elements to deactivate
17:18:05 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:05 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:05 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:05 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
17:18:05 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:05 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.02464254041326404
17:18:05 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:05 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:05 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:05 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:05 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:05 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:05 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(85), np.int64(0), np.int64(2), np.int64(413), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:05 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:05 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:05 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:05 DEBUG opendrift:2034: ======================================================================
17:18:05 INFO opendrift:2035: 2025-07-03 00:46:48.563089 - step 64 of 96 - 500 active elements (0 deactivated)
17:18:05 DEBUG opendrift:2041: 0 elements scheduled.
17:18:05 DEBUG opendrift:2043: ======================================================================
17:18:05 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.782373379503
17:18:05 DEBUG opendrift:2054: 10.511967461476399 <- longitude -> 10.79853056809362
17:18:05 DEBUG opendrift:2054: -27.202946140045494 <- z -> -0.5602365707572612
17:18:05 DEBUG opendrift:2055: ---------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:05 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:05 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 00:00:00 (before)
2025-07-03 01:00:00 (after)
17:18:05 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 00:00:00) in space (linearNDFast)
17:18:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:05 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 01:00:00) in space (linearNDFast)
17:18:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:05 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 00:00:00, weight 0.22) and
after (2025-07-03 01:00:00, weight 0.78) in time
17:18:05 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:05 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:05 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:05 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:05 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:05 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:05 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:05 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:05 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.16741 (min) 0.239618 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.00968138 (min) 0.483241 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.170241 (min) -0.145008 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: x_wind: 3.25967 (min) 5.28434 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.557035 (min) 0.880486 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 56.0976 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1794 (min) 16.3673 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3946 (min) 33.5105 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000779496 (min) 0.000595706 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:05 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:05 DEBUG opendrift:685: No elements hit coastline.
17:18:05 DEBUG opendrift:719: Lifting 29 elements to seafloor.
17:18:05 DEBUG opendrift:1636: No elements to deactivate
17:18:05 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:05 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:05 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:05 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
17:18:05 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:05 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.020406803216375457
17:18:05 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:05 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:05 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:05 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:05 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:05 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:05 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:05 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(85), np.int64(0), np.int64(2), np.int64(413), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:05 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:05 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:05 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:05 DEBUG opendrift:2034: ======================================================================
17:18:05 INFO opendrift:2035: 2025-07-03 01:16:48.563089 - step 65 of 96 - 500 active elements (0 deactivated)
17:18:05 DEBUG opendrift:2041: 0 elements scheduled.
17:18:05 DEBUG opendrift:2043: ======================================================================
17:18:05 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.78825018282454
17:18:05 DEBUG opendrift:2054: 10.511967461476395 <- longitude -> 10.79853056809362
17:18:05 DEBUG opendrift:2054: -28.9940985490116 <- z -> -0.4236488876741532
17:18:05 DEBUG opendrift:2055: ---------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:05 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:05 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 01:00:00 (before)
2025-07-03 02:00:00 (after)
17:18:08 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:08 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:08 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:08 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:08 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:08 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:08 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 54x40x7) for time after (2025-07-03 02:00:00)
17:18:08 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 01:00:00) in space (linearNDFast)
17:18:08 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:08 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 02:00:00) in space (linearNDFast)
17:18:08 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:08 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 01:00:00, weight 0.72) and
after (2025-07-03 02:00:00, weight 0.28) in time
17:18:08 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:08 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:08 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:08 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:08 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:08 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:08 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:08 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:08 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:08 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:08 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:08 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:08 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:08 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:08 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:08 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:08 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:08 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:08 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:08 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:08 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:08 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:08 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:08 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:08 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:08 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.170014 (min) 0.256386 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.012047 (min) 0.46867 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.194944 (min) -0.167316 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: x_wind: 3.81403 (min) 5.50397 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.402717 (min) 1.71466 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 62.8121 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1807 (min) 16.3509 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3829 (min) 33.5089 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00082048 (min) 0.000763768 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:08 DEBUG opendrift:685: No elements hit coastline.
17:18:08 DEBUG opendrift:719: Lifting 29 elements to seafloor.
17:18:08 DEBUG opendrift:1636: No elements to deactivate
17:18:08 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:08 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:08 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:08 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
17:18:08 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 0 0 0 0]
17:18:08 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3 3 3 3]
17:18:08 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 402. 0.]
[ 0. 0. 0. 0. 0.]
[ 11. 0. 0. 38. 0.]
[ 24. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:08 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:08 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:08 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:08 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:08 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.022011962865146437
17:18:08 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:08 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:08 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:08 DEBUG opendrift.models.oceandrift:548: 4 elements reached seafloor, interacting with bottom
17:18:08 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:08 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:08 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:08 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:08 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(82), np.int64(0), np.int64(2), np.int64(416), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:08 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:08 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:08 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:08 DEBUG opendrift:2034: ======================================================================
17:18:08 INFO opendrift:2035: 2025-07-03 01:46:48.563089 - step 66 of 96 - 500 active elements (0 deactivated)
17:18:08 DEBUG opendrift:2041: 0 elements scheduled.
17:18:08 DEBUG opendrift:2043: ======================================================================
17:18:08 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.79550563211187
17:18:08 DEBUG opendrift:2054: 10.511967461476395 <- longitude -> 10.79853056809362
17:18:08 DEBUG opendrift:2054: -29.7192440032959 <- z -> -0.024735081266109793
17:18:08 DEBUG opendrift:2055: ---------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:08 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:08 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:08 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:08 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 01:00:00 (before)
2025-07-03 02:00:00 (after)
17:18:08 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 01:00:00) in space (linearNDFast)
17:18:08 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:08 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 02:00:00) in space (linearNDFast)
17:18:08 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:08 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 01:00:00, weight 0.22) and
after (2025-07-03 02:00:00, weight 0.78) in time
17:18:08 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:08 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:18:08 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:18:08 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:08 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:08 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:08 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:08 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:08 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:08 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:08 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:08 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:08 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:08 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:08 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:08 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:08 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:08 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:08 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:08 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:08 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:08 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:08 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:08 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:08 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:08 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.174109 (min) 0.273079 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0199735 (min) 0.482447 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.220581 (min) -0.189316 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.59931 (min) 6.93546 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.72432 (min) 2.77674 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 70.6587 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1829 (min) 16.3362 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3337 (min) 33.5164 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000838495 (min) 0.00090126 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:08 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:08 DEBUG opendrift:685: No elements hit coastline.
17:18:08 DEBUG opendrift:719: Lifting 33 elements to seafloor.
17:18:08 DEBUG opendrift:1636: No elements to deactivate
17:18:08 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:08 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:08 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:08 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
17:18:08 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 0 0]
17:18:08 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3 3]
17:18:08 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 404. 0.]
[ 0. 0. 0. 0. 0.]
[ 11. 0. 0. 38. 0.]
[ 25. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:08 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:08 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:08 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:08 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:08 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.04033399491421423
17:18:08 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:08 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:08 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:548: 2 elements reached seafloor, interacting with bottom
17:18:08 DEBUG opendrift:719: Lifting 2 elements to seafloor.
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:08 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:08 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:08 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:08 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:08 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(81), np.int64(0), np.int64(2), np.int64(417), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:08 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:08 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:08 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:08 DEBUG opendrift:2034: ======================================================================
17:18:08 INFO opendrift:2035: 2025-07-03 02:16:48.563089 - step 67 of 96 - 500 active elements (0 deactivated)
17:18:08 DEBUG opendrift:2041: 0 elements scheduled.
17:18:08 DEBUG opendrift:2043: ======================================================================
17:18:08 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.802821053556144
17:18:08 DEBUG opendrift:2054: 10.511967461476395 <- longitude -> 10.798530568093614
17:18:08 DEBUG opendrift:2054: -29.696598052978516 <- z -> -0.20857307958424853
17:18:08 DEBUG opendrift:2055: ---------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:08 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:08 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:08 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:08 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:08 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 02:00:00 (before)
2025-07-03 03:00:00 (after)
17:18:10 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:10 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:10 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:10 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:10 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:10 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:10 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 56x41x7) for time after (2025-07-03 03:00:00)
17:18:10 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 02:00:00) in space (linearNDFast)
17:18:10 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:10 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 03:00:00) in space (linearNDFast)
17:18:10 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:10 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 02:00:00, weight 0.72) and
after (2025-07-03 03:00:00, weight 0.28) in time
17:18:10 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:10 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:10 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:10 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:10 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:10 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:10 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:10 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:10 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:10 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:10 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:10 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:10 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:10 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:10 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:10 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:10 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:10 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:10 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:10 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:10 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:10 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:10 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:10 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:10 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:10 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.184811 (min) 0.265963 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0091428 (min) 0.450353 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.238105 (min) -0.207852 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.5293 (min) 8.29548 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.70352 (min) 3.75586 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 77.7697 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1841 (min) 16.312 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4749 (min) 33.7068 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000807728 (min) 0.00100809 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:10 DEBUG opendrift:685: No elements hit coastline.
17:18:10 DEBUG opendrift:719: Lifting 38 elements to seafloor.
17:18:10 DEBUG opendrift:1636: No elements to deactivate
17:18:10 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:10 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:10 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:10 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
17:18:10 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 0]
17:18:10 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3]
17:18:10 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 405. 0.]
[ 0. 0. 0. 0. 0.]
[ 11. 0. 0. 38. 0.]
[ 26. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:10 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:10 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:10 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:10 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:10 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.05992469869167206
17:18:10 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:10 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:10 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:10 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:18:10 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:18:10 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:10 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:10 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:10 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:10 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(81), np.int64(0), np.int64(2), np.int64(417), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:10 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:10 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:10 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:10 DEBUG opendrift:2034: ======================================================================
17:18:10 INFO opendrift:2035: 2025-07-03 02:46:48.563089 - step 68 of 96 - 500 active elements (0 deactivated)
17:18:10 DEBUG opendrift:2041: 0 elements scheduled.
17:18:10 DEBUG opendrift:2043: ======================================================================
17:18:10 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.80521239510935
17:18:10 DEBUG opendrift:2054: 10.511967461476395 <- longitude -> 10.798530568093614
17:18:10 DEBUG opendrift:2054: -29.679969787597656 <- z -> -1.0851077991870914
17:18:10 DEBUG opendrift:2055: ---------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:10 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:10 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:10 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:10 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 02:00:00 (before)
2025-07-03 03:00:00 (after)
17:18:10 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 02:00:00) in space (linearNDFast)
17:18:10 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:10 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 03:00:00) in space (linearNDFast)
17:18:10 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:10 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 02:00:00, weight 0.22) and
after (2025-07-03 03:00:00, weight 0.78) in time
17:18:10 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:10 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:10 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:10 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:10 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:10 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:10 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:10 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:10 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:10 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:10 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:10 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:10 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:10 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:10 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:10 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:10 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:10 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:10 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:10 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:10 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:10 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:10 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:10 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:10 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:10 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.181497 (min) 0.320487 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0279734 (min) 0.444567 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.249544 (min) -0.222229 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.71639 (min) 8.95423 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: y_wind: 3.37428 (min) 4.27957 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 80.2231 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.1844 (min) 16.2937 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4995 (min) 33.7217 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000738676 (min) 0.0010336 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:10 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:10 DEBUG opendrift:685: No elements hit coastline.
17:18:10 DEBUG opendrift:719: Lifting 39 elements to seafloor.
17:18:10 DEBUG opendrift:1636: No elements to deactivate
17:18:10 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:10 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:10 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:10 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
17:18:10 DEBUG opendrift.models.chemicaldrift:1476: old species: [2 0]
17:18:10 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3]
17:18:10 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 406. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 26. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:10 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:10 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:10 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:10 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:10 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.07117703692082668
17:18:10 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:10 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:10 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:10 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:18:10 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:18:10 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:10 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:10 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:10 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:10 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:10 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:10 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(81), np.int64(0), np.int64(1), np.int64(418), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:10 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:10 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:10 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:10 DEBUG opendrift:2034: ======================================================================
17:18:10 INFO opendrift:2035: 2025-07-03 03:16:48.563089 - step 69 of 96 - 500 active elements (0 deactivated)
17:18:10 DEBUG opendrift:2041: 0 elements scheduled.
17:18:10 DEBUG opendrift:2043: ======================================================================
17:18:10 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.81108618068096
17:18:10 DEBUG opendrift:2054: 10.511967461476395 <- longitude -> 10.79853056809362
17:18:10 DEBUG opendrift:2054: -31.045919380319138 <- z -> -0.22978072975224473
17:18:10 DEBUG opendrift:2055: ---------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:10 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:10 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:10 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:10 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:10 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 03:00:00 (before)
2025-07-03 04:00:00 (after)
17:18:12 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:12 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:12 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:12 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:12 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:12 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:12 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 57x41x7) for time after (2025-07-03 04:00:00)
17:18:12 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 03:00:00) in space (linearNDFast)
17:18:12 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:12 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 04:00:00) in space (linearNDFast)
17:18:12 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:12 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 03:00:00, weight 0.72) and
after (2025-07-03 04:00:00, weight 0.28) in time
17:18:12 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:12 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:12 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:13 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:13 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:13 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:13 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:13 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:13 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:13 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:13 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:13 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:13 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:13 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:13 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.178017 (min) 0.248505 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0623194 (min) 0.406088 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.266035 (min) -0.232626 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.52888 (min) 9.8686 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: y_wind: 3.65602 (min) 4.53521 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 85.2251 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.8891 (min) 16.2353 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3293 (min) 33.9487 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000664313 (min) 0.00102848 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:13 DEBUG opendrift:685: No elements hit coastline.
17:18:13 DEBUG opendrift:719: Lifting 40 elements to seafloor.
17:18:13 DEBUG opendrift:1636: No elements to deactivate
17:18:13 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:13 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:13 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:13 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
17:18:13 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0]
17:18:13 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3]
17:18:13 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 409. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 26. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:13 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:13 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:13 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:13 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:13 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.08524248618570246
17:18:13 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:13 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:13 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:13 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:548: 3 elements reached seafloor, interacting with bottom
17:18:13 DEBUG opendrift:719: Lifting 3 elements to seafloor.
17:18:13 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:13 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:13 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:13 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:13 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:13 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(78), np.int64(0), np.int64(1), np.int64(421), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:13 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:13 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:13 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:13 DEBUG opendrift:2034: ======================================================================
17:18:13 INFO opendrift:2035: 2025-07-03 03:46:48.563089 - step 70 of 96 - 500 active elements (0 deactivated)
17:18:13 DEBUG opendrift:2041: 0 elements scheduled.
17:18:13 DEBUG opendrift:2043: ======================================================================
17:18:13 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.81471608094643
17:18:13 DEBUG opendrift:2054: 10.511967461476395 <- longitude -> 10.798530568093614
17:18:13 DEBUG opendrift:2054: -33.14928060918305 <- z -> -0.48228760604689747
17:18:13 DEBUG opendrift:2055: ---------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:13 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:13 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 03:00:00 (before)
2025-07-03 04:00:00 (after)
17:18:13 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 03:00:00) in space (linearNDFast)
17:18:13 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:13 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 04:00:00) in space (linearNDFast)
17:18:13 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:13 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 03:00:00, weight 0.22) and
after (2025-07-03 04:00:00, weight 0.78) in time
17:18:13 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:13 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:18:13 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:18:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:13 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:13 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:13 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:13 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:13 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:13 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:13 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:13 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:13 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:13 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:13 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:13 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.176713 (min) 0.234066 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0490719 (min) 0.364531 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.281671 (min) -0.239551 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.99425 (min) 10.8076 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: y_wind: 3.45648 (min) 4.53032 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 88.2773 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.845 (min) 16.2009 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5189 (min) 33.9161 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000694135 (min) 0.00104682 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:13 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:13 DEBUG opendrift:685: No elements hit coastline.
17:18:13 DEBUG opendrift:719: Lifting 43 elements to seafloor.
17:18:13 DEBUG opendrift:1636: No elements to deactivate
17:18:13 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:13 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:13 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:13 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:18:13 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
17:18:13 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
17:18:13 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 410. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 26. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:13 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:13 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:13 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:13 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:13 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.09918545681314402
17:18:13 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:13 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:13 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:13 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:18:13 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:18:13 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:13 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:13 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:13 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:13 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:13 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:13 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(77), np.int64(0), np.int64(1), np.int64(422), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:13 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:13 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:13 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:13 DEBUG opendrift:2034: ======================================================================
17:18:13 INFO opendrift:2035: 2025-07-03 04:16:48.563089 - step 71 of 96 - 500 active elements (0 deactivated)
17:18:13 DEBUG opendrift:2041: 0 elements scheduled.
17:18:13 DEBUG opendrift:2043: ======================================================================
17:18:13 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.8173147805499
17:18:13 DEBUG opendrift:2054: 10.511967461476397 <- longitude -> 10.798530568093614
17:18:13 DEBUG opendrift:2054: -30.74693458912365 <- z -> -0.8075266137177146
17:18:13 DEBUG opendrift:2055: ---------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:13 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:13 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 04:00:00 (before)
2025-07-03 05:00:00 (after)
17:18:15 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:15 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:15 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:15 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:15 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:15 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:15 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 57x42x7) for time after (2025-07-03 05:00:00)
17:18:15 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 04:00:00) in space (linearNDFast)
17:18:15 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:15 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 05:00:00) in space (linearNDFast)
17:18:15 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:15 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 04:00:00, weight 0.72) and
after (2025-07-03 05:00:00, weight 0.28) in time
17:18:15 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:15 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:15 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488043633245 and -59.201480486812486 degrees.
17:18:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:15 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:15 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:15 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:15 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:15 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:15 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:15 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:15 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:15 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:15 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:15 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:15 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.1672 (min) 0.247051 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0617459 (min) 0.315032 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.292469 (min) -0.239227 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.9289 (min) 11.3274 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.93708 (min) 4.10495 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 90.4217 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 15.0735 (min) 16.1817 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3897 (min) 33.7674 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000541533 (min) 0.00106311 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:15 DEBUG opendrift:685: No elements hit coastline.
17:18:15 DEBUG opendrift:719: Lifting 44 elements to seafloor.
17:18:15 DEBUG opendrift:1636: No elements to deactivate
17:18:15 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:15 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:15 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:15 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:18:15 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
17:18:15 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
17:18:15 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 411. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 26. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:15 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:15 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:15 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:15 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:15 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.10488837454697598
17:18:15 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:15 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:15 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:15 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:18:15 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:15 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:15 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:15 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:15 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:15 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(76), np.int64(0), np.int64(1), np.int64(423), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:15 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:15 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:15 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:15 DEBUG opendrift:2034: ======================================================================
17:18:15 INFO opendrift:2035: 2025-07-03 04:46:48.563089 - step 72 of 96 - 500 active elements (0 deactivated)
17:18:15 DEBUG opendrift:2041: 0 elements scheduled.
17:18:15 DEBUG opendrift:2043: ======================================================================
17:18:15 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.82235977077414
17:18:15 DEBUG opendrift:2054: 10.511967461476399 <- longitude -> 10.798530568093609
17:18:15 DEBUG opendrift:2054: -36.239364895026334 <- z -> 0.0
17:18:15 DEBUG opendrift:2055: ---------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:15 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:15 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 04:00:00 (before)
2025-07-03 05:00:00 (after)
17:18:15 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 04:00:00) in space (linearNDFast)
17:18:15 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:15 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 05:00:00) in space (linearNDFast)
17:18:15 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:15 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 04:00:00, weight 0.22) and
after (2025-07-03 05:00:00, weight 0.78) in time
17:18:15 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:15 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:18:15 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:18:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:15 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:15 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:15 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:15 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:15 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:15 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:15 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:15 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:15 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:15 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:15 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:15 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.153966 (min) 0.276096 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.113133 (min) 0.295136 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.299469 (min) -0.235466 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.1245 (min) 11.4315 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.16669 (min) 3.34746 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 93.7446 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.7188 (min) 16.1761 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3779 (min) 33.8759 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000422855 (min) 0.00115033 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:15 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:15 DEBUG opendrift:685: No elements hit coastline.
17:18:15 DEBUG opendrift:719: Lifting 33 elements to seafloor.
17:18:15 DEBUG opendrift:1636: No elements to deactivate
17:18:15 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:15 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:15 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:15 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:18:15 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
17:18:15 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
17:18:15 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 412. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 26. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:15 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:15 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:15 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:15 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:15 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.10241479468614598
17:18:15 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:15 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:15 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:18:15 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:15 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:15 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:15 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:15 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:15 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:15 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(75), np.int64(0), np.int64(1), np.int64(424), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:15 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:15 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:15 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:15 DEBUG opendrift:2034: ======================================================================
17:18:15 INFO opendrift:2035: 2025-07-03 05:16:48.563089 - step 73 of 96 - 500 active elements (0 deactivated)
17:18:15 DEBUG opendrift:2041: 0 elements scheduled.
17:18:15 DEBUG opendrift:2043: ======================================================================
17:18:15 DEBUG opendrift:2054: 57.558988047384965 <- latitude -> 57.82685012445832
17:18:15 DEBUG opendrift:2054: 10.511967461476399 <- longitude -> 10.798530568093605
17:18:15 DEBUG opendrift:2054: -34.65823822988044 <- z -> 0.0
17:18:15 DEBUG opendrift:2055: ---------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:15 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:15 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 05:00:00 (before)
2025-07-03 06:00:00 (after)
17:18:17 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:17 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:17 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:17 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:17 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:17 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:17 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 59x42x7) for time after (2025-07-03 06:00:00)
17:18:17 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 05:00:00) in space (linearNDFast)
17:18:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:17 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 06:00:00) in space (linearNDFast)
17:18:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:17 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 05:00:00, weight 0.72) and
after (2025-07-03 06:00:00, weight 0.28) in time
17:18:17 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:18:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48804362971186 and -59.201480486812486 degrees.
17:18:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:17 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:17 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:17 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:17 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:17 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:17 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:17 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:17 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.152266 (min) 0.25533 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.138045 (min) 0.229148 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.291945 (min) -0.22091 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.227 (min) 11.2791 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.1665 (min) 1.98956 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91955 (min) 96.6209 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.5735 (min) 16.0816 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.3833 (min) 34.0348 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000286797 (min) 0.00133106 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:17 DEBUG opendrift:685: No elements hit coastline.
17:18:17 DEBUG opendrift:714: No elements hit seafloor.
17:18:17 DEBUG opendrift:1636: No elements to deactivate
17:18:17 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:17 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:17 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:17 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
17:18:17 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 3 3]
17:18:17 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 0 0]
17:18:17 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 412. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 29. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:17 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:17 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:17 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:17 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:17 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.09389069529036274
17:18:17 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:17 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:17 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:17 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:17 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:17 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:17 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:17 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(78), np.int64(0), np.int64(1), np.int64(421), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:17 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:17 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:17 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:17 DEBUG opendrift:2034: ======================================================================
17:18:17 INFO opendrift:2035: 2025-07-03 05:46:48.563089 - step 74 of 96 - 500 active elements (0 deactivated)
17:18:17 DEBUG opendrift:2041: 0 elements scheduled.
17:18:17 DEBUG opendrift:2043: ======================================================================
17:18:17 DEBUG opendrift:2054: 57.56086088399848 <- latitude -> 57.82927263914614
17:18:17 DEBUG opendrift:2054: 10.512067794820325 <- longitude -> 10.798530568093609
17:18:17 DEBUG opendrift:2054: -36.657052553081456 <- z -> -1.3907835542676161
17:18:17 DEBUG opendrift:2055: ---------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:17 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:17 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 05:00:00 (before)
2025-07-03 06:00:00 (after)
17:18:17 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 05:00:00) in space (linearNDFast)
17:18:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:17 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 06:00:00) in space (linearNDFast)
17:18:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:17 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 05:00:00, weight 0.22) and
after (2025-07-03 06:00:00, weight 0.78) in time
17:18:17 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.487943295544326 and -59.20148047373076 degrees.
17:18:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.487943295544326 and -59.20148047373076 degrees.
17:18:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:17 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:17 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:17 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:17 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:17 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:17 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:17 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:17 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.154198 (min) 0.222026 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.116213 (min) 0.175176 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.272801 (min) -0.19832 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.52766 (min) 11.2963 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.282845 (min) 0.754088 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.88184 (min) 98.261 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.47 (min) 16.058 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4073 (min) 33.9803 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -1.05743e-05 (min) 0.00131408 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:17 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:17 DEBUG opendrift:685: No elements hit coastline.
17:18:17 DEBUG opendrift:714: No elements hit seafloor.
17:18:17 DEBUG opendrift:1636: No elements to deactivate
17:18:17 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:17 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:17 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:17 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:18:17 DEBUG opendrift.models.chemicaldrift:1476: old species: [3]
17:18:17 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
17:18:17 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 412. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 30. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:17 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:17 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:17 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:17 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:17 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.0923428932221024
17:18:17 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:17 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:17 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:17 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:17 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:17 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:17 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:17 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:17 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(79), np.int64(0), np.int64(1), np.int64(420), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:17 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:17 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:17 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:17 DEBUG opendrift:2034: ======================================================================
17:18:17 INFO opendrift:2035: 2025-07-03 06:16:48.563089 - step 75 of 96 - 500 active elements (0 deactivated)
17:18:17 DEBUG opendrift:2041: 0 elements scheduled.
17:18:17 DEBUG opendrift:2043: ======================================================================
17:18:17 DEBUG opendrift:2054: 57.56297613570238 <- latitude -> 57.83100647896137
17:18:17 DEBUG opendrift:2054: 10.512513183099482 <- longitude -> 10.798530568093609
17:18:17 DEBUG opendrift:2054: -35.58138694331977 <- z -> 0.0
17:18:17 DEBUG opendrift:2055: ---------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:17 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:17 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 06:00:00 (before)
2025-07-03 07:00:00 (after)
17:18:19 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:19 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:19 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:19 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:19 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:19 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:19 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 59x43x7) for time after (2025-07-03 07:00:00)
17:18:19 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 06:00:00) in space (linearNDFast)
17:18:19 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:19 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 07:00:00) in space (linearNDFast)
17:18:19 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:19 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 06:00:00, weight 0.72) and
after (2025-07-03 07:00:00, weight 0.28) in time
17:18:19 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:19 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.487497905381645 and -59.20148047373076 degrees.
17:18:19 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.487497905381645 and -59.20148047373076 degrees.
17:18:19 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:19 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:19 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:19 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:19 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:19 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:19 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:19 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:19 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:19 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:19 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:19 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:19 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:19 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:19 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:19 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:19 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:19 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:19 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:19 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:19 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:19 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:19 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.159856 (min) 0.254955 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0926544 (min) 0.137304 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.241516 (min) -0.173195 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.45853 (min) 11.2066 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.26408 (min) -0.218222 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.87473 (min) 99.3922 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.5974 (min) 16.0831 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5541 (min) 33.9643 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000123911 (min) 0.00107506 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:19 DEBUG opendrift:685: No elements hit coastline.
17:18:19 DEBUG opendrift:714: No elements hit seafloor.
17:18:19 DEBUG opendrift:1636: No elements to deactivate
17:18:19 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:19 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:19 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:19 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
17:18:19 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:19 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.09093763691266381
17:18:19 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:19 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:19 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:19 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:19 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:19 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:19 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:19 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(79), np.int64(0), np.int64(1), np.int64(420), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:19 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:19 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:19 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:19 DEBUG opendrift:2034: ======================================================================
17:18:19 INFO opendrift:2035: 2025-07-03 06:46:48.563089 - step 76 of 96 - 500 active elements (0 deactivated)
17:18:19 DEBUG opendrift:2041: 0 elements scheduled.
17:18:19 DEBUG opendrift:2043: ======================================================================
17:18:19 DEBUG opendrift:2054: 57.56438557320619 <- latitude -> 57.83299457237709
17:18:19 DEBUG opendrift:2054: 10.513525689913177 <- longitude -> 10.798530568093609
17:18:19 DEBUG opendrift:2054: -36.29066805892271 <- z -> -0.07613520872792856
17:18:19 DEBUG opendrift:2055: ---------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:19 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:19 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:19 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:19 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 06:00:00 (before)
2025-07-03 07:00:00 (after)
17:18:19 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 06:00:00) in space (linearNDFast)
17:18:19 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:19 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 07:00:00) in space (linearNDFast)
17:18:19 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:19 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 06:00:00, weight 0.22) and
after (2025-07-03 07:00:00, weight 0.78) in time
17:18:19 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:19 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.486485396869625 and -59.20148047373076 degrees.
17:18:19 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.486485396869625 and -59.20148047373076 degrees.
17:18:19 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:19 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:19 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:19 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:19 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:19 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:19 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:19 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:19 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:19 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:19 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:19 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:19 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:19 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:19 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:19 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:19 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:19 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:19 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:19 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:19 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:19 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:19 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.159131 (min) 0.215571 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.166817 (min) 0.139459 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.200714 (min) -0.144617 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.2939 (min) 10.8916 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.69509 (min) -0.885762 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91759 (min) 100.645 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.3774 (min) 16.0691 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.294 (min) 33.9778 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00024799 (min) 0.00113791 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:19 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:19 DEBUG opendrift:685: No elements hit coastline.
17:18:19 DEBUG opendrift:714: No elements hit seafloor.
17:18:19 DEBUG opendrift:1636: No elements to deactivate
17:18:19 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:19 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:19 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:19 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
17:18:19 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 0]
17:18:19 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3]
17:18:19 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 413. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 31. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:19 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:19 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:19 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:19 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:19 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.08719557067247137
17:18:19 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:19 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:19 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:18:19 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:19 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:19 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:19 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:19 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:19 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:19 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(79), np.int64(0), np.int64(1), np.int64(420), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:19 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:19 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:19 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:19 DEBUG opendrift:2034: ======================================================================
17:18:19 INFO opendrift:2035: 2025-07-03 07:16:48.563089 - step 77 of 96 - 500 active elements (0 deactivated)
17:18:19 DEBUG opendrift:2041: 0 elements scheduled.
17:18:19 DEBUG opendrift:2043: ======================================================================
17:18:19 DEBUG opendrift:2054: 57.56476459738314 <- latitude -> 57.834955181873845
17:18:19 DEBUG opendrift:2054: 10.51411300166192 <- longitude -> 10.798530568093605
17:18:19 DEBUG opendrift:2054: -37.89848728465955 <- z -> 0.0
17:18:19 DEBUG opendrift:2055: ---------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:19 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:19 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:19 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:19 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:19 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 07:00:00 (before)
2025-07-03 08:00:00 (after)
17:18:21 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:21 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:21 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:21 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:21 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:21 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:21 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 60x43x7) for time after (2025-07-03 08:00:00)
17:18:21 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 07:00:00) in space (linearNDFast)
17:18:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:21 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 08:00:00) in space (linearNDFast)
17:18:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:21 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 07:00:00, weight 0.72) and
after (2025-07-03 08:00:00, weight 0.28) in time
17:18:21 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48589809325995 and -59.20148047373076 degrees.
17:18:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48589809325995 and -59.20148047373076 degrees.
17:18:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:21 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:21 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:21 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:21 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:21 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:21 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:21 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:21 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.152488 (min) 0.180026 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.210519 (min) 0.164253 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.159813 (min) -0.116287 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.91495 (min) 10.7402 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.36488 (min) -1.27924 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.94638 (min) 101.836 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.505 (min) 16.0346 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4613 (min) 34.0435 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000295299 (min) 0.0010998 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:21 DEBUG opendrift:685: No elements hit coastline.
17:18:21 DEBUG opendrift:714: No elements hit seafloor.
17:18:21 DEBUG opendrift:1636: No elements to deactivate
17:18:21 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:21 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:21 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:21 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:18:21 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
17:18:21 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
17:18:21 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 414. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 31. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:21 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:21 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:21 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:21 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:21 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.08696988263555737
17:18:21 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:21 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:21 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:21 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:18:21 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:18:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:21 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:21 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:21 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:21 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:21 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(78), np.int64(0), np.int64(1), np.int64(421), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:21 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:21 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:21 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:21 DEBUG opendrift:2034: ======================================================================
17:18:21 INFO opendrift:2035: 2025-07-03 07:46:48.563089 - step 78 of 96 - 500 active elements (0 deactivated)
17:18:21 DEBUG opendrift:2041: 0 elements scheduled.
17:18:21 DEBUG opendrift:2043: ======================================================================
17:18:21 DEBUG opendrift:2054: 57.56591987027292 <- latitude -> 57.83678597723812
17:18:21 DEBUG opendrift:2054: 10.51467429581273 <- longitude -> 10.798530568093605
17:18:21 DEBUG opendrift:2054: -35.51546101365453 <- z -> 0.0
17:18:21 DEBUG opendrift:2055: ---------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:21 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:21 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 07:00:00 (before)
2025-07-03 08:00:00 (after)
17:18:21 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 07:00:00) in space (linearNDFast)
17:18:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:21 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 08:00:00) in space (linearNDFast)
17:18:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:21 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 07:00:00, weight 0.22) and
after (2025-07-03 08:00:00, weight 0.78) in time
17:18:21 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48533679713569 and -59.20148047373076 degrees.
17:18:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48533679713569 and -59.20148047373076 degrees.
17:18:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:21 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:21 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:21 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:21 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:21 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:21 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:21 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:21 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.143741 (min) 0.170189 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.236406 (min) 0.170101 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.118809 (min) -0.0866264 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.17847 (min) 10.6337 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.1297 (min) -1.90904 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.98647 (min) 102.93 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.541 (min) 16.0446 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.492 (min) 34.0334 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000259529 (min) 0.000940215 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:21 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:21 DEBUG opendrift:685: No elements hit coastline.
17:18:21 DEBUG opendrift:714: No elements hit seafloor.
17:18:21 DEBUG opendrift:1636: No elements to deactivate
17:18:21 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:21 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:21 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:21 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
17:18:21 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 3 3]
17:18:21 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 0 0]
17:18:21 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 414. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 34. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:21 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:21 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:21 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:21 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:21 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.08835745135207698
17:18:21 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:21 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:21 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:21 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:21 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:21 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:21 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:21 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:21 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:21 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(81), np.int64(0), np.int64(1), np.int64(418), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:21 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:21 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:21 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:21 DEBUG opendrift:2034: ======================================================================
17:18:21 INFO opendrift:2035: 2025-07-03 08:16:48.563089 - step 79 of 96 - 500 active elements (0 deactivated)
17:18:21 DEBUG opendrift:2041: 0 elements scheduled.
17:18:21 DEBUG opendrift:2043: ======================================================================
17:18:21 DEBUG opendrift:2054: 57.566590448726856 <- latitude -> 57.838872830350475
17:18:21 DEBUG opendrift:2054: 10.514788472710192 <- longitude -> 10.798530568093605
17:18:21 DEBUG opendrift:2054: -37.41011062805214 <- z -> 0.0
17:18:21 DEBUG opendrift:2055: ---------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:21 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:21 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 08:00:00 (before)
2025-07-03 09:00:00 (after)
17:18:23 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:23 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:23 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:23 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:23 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:23 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:23 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 60x43x7) for time after (2025-07-03 09:00:00)
17:18:23 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 08:00:00) in space (linearNDFast)
17:18:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:23 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 09:00:00) in space (linearNDFast)
17:18:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:23 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 08:00:00, weight 0.72) and
after (2025-07-03 09:00:00, weight 0.28) in time
17:18:23 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:23 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485222617440215 and -59.20148047373076 degrees.
17:18:23 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485222617440215 and -59.20148047373076 degrees.
17:18:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:23 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:23 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:23 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:23 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:23 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:23 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:23 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:23 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:23 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:23 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:23 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:23 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.145473 (min) 0.172216 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.263737 (min) 0.160293 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0806344 (min) -0.0578409 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.06261 (min) 10.3968 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.53652 (min) -2.44161 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.0041 (min) 104.145 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.3753 (min) 16.0496 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4888 (min) 34.0644 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000182146 (min) 0.000742023 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:23 DEBUG opendrift:685: No elements hit coastline.
17:18:23 DEBUG opendrift:714: No elements hit seafloor.
17:18:23 DEBUG opendrift:1636: No elements to deactivate
17:18:23 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:23 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:23 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:23 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
17:18:23 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 0 0 3]
17:18:23 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3 3 0]
17:18:23 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 416. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 36. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:23 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:23 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:23 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:23 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:23 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.08650031764382149
17:18:23 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:23 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:23 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:548: 2 elements reached seafloor, interacting with bottom
17:18:23 DEBUG opendrift:719: Lifting 2 elements to seafloor.
17:18:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:18:23 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:23 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:23 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:23 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:23 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(81), np.int64(0), np.int64(1), np.int64(418), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:23 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:23 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:23 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:23 DEBUG opendrift:2034: ======================================================================
17:18:23 INFO opendrift:2035: 2025-07-03 08:46:48.563089 - step 80 of 96 - 500 active elements (0 deactivated)
17:18:23 DEBUG opendrift:2041: 0 elements scheduled.
17:18:23 DEBUG opendrift:2043: ======================================================================
17:18:23 DEBUG opendrift:2054: 57.566590448726856 <- latitude -> 57.84108243264933
17:18:23 DEBUG opendrift:2054: 10.514885632215023 <- longitude -> 10.798530568093609
17:18:23 DEBUG opendrift:2054: -37.122414853252046 <- z -> -0.22333243994030783
17:18:23 DEBUG opendrift:2055: ---------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:23 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:23 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 08:00:00 (before)
2025-07-03 09:00:00 (after)
17:18:23 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 08:00:00) in space (linearNDFast)
17:18:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:23 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 09:00:00) in space (linearNDFast)
17:18:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:23 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 08:00:00, weight 0.22) and
after (2025-07-03 09:00:00, weight 0.78) in time
17:18:23 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:23 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48512544988759 and -59.20148047373076 degrees.
17:18:23 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48512544988759 and -59.20148047373076 degrees.
17:18:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:23 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:23 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:23 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:23 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:23 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:23 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:23 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:23 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:23 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:23 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:23 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:23 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.145962 (min) 0.103296 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.304181 (min) 0.161515 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0541777 (min) -0.0299358 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.20222 (min) 10.5879 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.76688 (min) -2.89874 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.0281 (min) 105.396 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.255 (min) 16.0549 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5113 (min) 34.0599 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000201207 (min) 0.000777902 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:23 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:23 DEBUG opendrift:685: No elements hit coastline.
17:18:23 DEBUG opendrift:714: No elements hit seafloor.
17:18:23 DEBUG opendrift:1636: No elements to deactivate
17:18:23 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:23 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:23 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:23 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
17:18:23 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 3 3 0]
17:18:23 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 0 0 3]
17:18:23 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 419. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 38. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:23 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:23 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:23 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:23 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:23 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.09001346900879097
17:18:23 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:23 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:23 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:548: 3 elements reached seafloor, interacting with bottom
17:18:23 DEBUG opendrift:719: Lifting 3 elements to seafloor.
17:18:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:23 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:23 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:23 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:23 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:23 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:23 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(80), np.int64(0), np.int64(1), np.int64(419), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:23 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:23 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:23 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:23 DEBUG opendrift:2034: ======================================================================
17:18:23 INFO opendrift:2035: 2025-07-03 09:16:48.563089 - step 81 of 96 - 500 active elements (0 deactivated)
17:18:23 DEBUG opendrift:2041: 0 elements scheduled.
17:18:23 DEBUG opendrift:2043: ======================================================================
17:18:23 DEBUG opendrift:2054: 57.566590448726856 <- latitude -> 57.84369276460756
17:18:23 DEBUG opendrift:2054: 10.514860629134787 <- longitude -> 10.798530568093609
17:18:23 DEBUG opendrift:2054: -38.672491662353266 <- z -> 0.0
17:18:23 DEBUG opendrift:2055: ---------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:23 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:23 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 09:00:00 (before)
2025-07-03 10:00:00 (after)
17:18:25 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:25 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:25 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:25 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:25 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:25 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:25 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 61x43x7) for time after (2025-07-03 10:00:00)
17:18:25 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 09:00:00) in space (linearNDFast)
17:18:25 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:25 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 10:00:00) in space (linearNDFast)
17:18:25 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:25 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 09:00:00, weight 0.72) and
after (2025-07-03 10:00:00, weight 0.28) in time
17:18:25 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:25 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48515046288112 and -59.20148047373076 degrees.
17:18:25 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48515046288112 and -59.20148047373076 degrees.
17:18:25 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:25 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:25 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:25 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:25 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:25 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:25 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:25 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:25 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:25 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:25 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:25 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:25 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:25 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:25 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:25 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:25 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:25 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:25 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:25 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:25 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:25 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:25 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.145608 (min) 0.128211 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.304223 (min) 0.227104 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0355544 (min) -0.00711965 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.81977 (min) 11.2684 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.51496 (min) -2.70645 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.0476 (min) 106.818 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.2344 (min) 16.2091 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4162 (min) 34.0835 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00025017 (min) 0.000686426 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:25 DEBUG opendrift:685: No elements hit coastline.
17:18:25 DEBUG opendrift:714: No elements hit seafloor.
17:18:25 DEBUG opendrift:1636: No elements to deactivate
17:18:25 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:25 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:25 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:25 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
17:18:25 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 0 0]
17:18:25 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3 3]
17:18:25 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 421. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 39. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:25 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:25 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:25 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:25 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:25 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.09923111975262788
17:18:25 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:25 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:25 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:548: 2 elements reached seafloor, interacting with bottom
17:18:25 DEBUG opendrift:719: Lifting 2 elements to seafloor.
17:18:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 9 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:25 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:25 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:25 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:25 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:25 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(79), np.int64(0), np.int64(1), np.int64(420), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:25 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:25 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:25 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:25 DEBUG opendrift:2034: ======================================================================
17:18:25 INFO opendrift:2035: 2025-07-03 09:46:48.563089 - step 82 of 96 - 500 active elements (0 deactivated)
17:18:25 DEBUG opendrift:2041: 0 elements scheduled.
17:18:25 DEBUG opendrift:2043: ======================================================================
17:18:25 DEBUG opendrift:2054: 57.566590448726856 <- latitude -> 57.847363080552
17:18:25 DEBUG opendrift:2054: 10.515003950428737 <- longitude -> 10.798530568093609
17:18:25 DEBUG opendrift:2054: -35.37487948464759 <- z -> -0.33630409308706133
17:18:25 DEBUG opendrift:2055: ---------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:25 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:25 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:25 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:25 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 09:00:00 (before)
2025-07-03 10:00:00 (after)
17:18:25 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 09:00:00) in space (linearNDFast)
17:18:25 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:25 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 10:00:00) in space (linearNDFast)
17:18:25 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:25 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 09:00:00, weight 0.22) and
after (2025-07-03 10:00:00, weight 0.78) in time
17:18:25 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:25 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48500714388456 and -59.20148047373076 degrees.
17:18:25 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48500714388456 and -59.20148047373076 degrees.
17:18:25 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:25 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:25 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:25 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:25 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:25 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:25 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:25 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:25 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:25 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:25 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:25 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:25 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:25 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:25 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:25 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:25 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:25 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:25 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:25 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:25 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:25 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:25 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.144592 (min) 0.140948 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.271308 (min) 0.21612 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0215247 (min) 0.0108658 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.4301 (min) 11.3651 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.35169 (min) -2.02901 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.0841 (min) 108.747 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.2095 (min) 16.0384 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4719 (min) 34.0404 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000271125 (min) 0.000559626 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:25 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:25 DEBUG opendrift:685: No elements hit coastline.
17:18:25 DEBUG opendrift:714: No elements hit seafloor.
17:18:25 DEBUG opendrift:1636: No elements to deactivate
17:18:25 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:25 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:25 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:25 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
17:18:25 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0]
17:18:25 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3]
17:18:25 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 425. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 39. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:25 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:25 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:25 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:25 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:25 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.09735821195950971
17:18:25 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:25 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:25 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:25 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:25 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:25 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:25 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:25 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:25 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(75), np.int64(0), np.int64(1), np.int64(424), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:25 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:25 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:25 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:25 DEBUG opendrift:2034: ======================================================================
17:18:25 INFO opendrift:2035: 2025-07-03 10:16:48.563089 - step 83 of 96 - 500 active elements (0 deactivated)
17:18:25 DEBUG opendrift:2041: 0 elements scheduled.
17:18:25 DEBUG opendrift:2043: ======================================================================
17:18:25 DEBUG opendrift:2054: 57.566220042823915 <- latitude -> 57.85085590580926
17:18:25 DEBUG opendrift:2054: 10.515290608522948 <- longitude -> 10.798530568093609
17:18:25 DEBUG opendrift:2054: -36.3964355212332 <- z -> 0.0
17:18:25 DEBUG opendrift:2055: ---------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:25 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:25 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:25 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:25 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:25 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 10:00:00 (before)
2025-07-03 11:00:00 (after)
17:18:27 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:27 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:27 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:27 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:27 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:27 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:27 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 62x43x7) for time after (2025-07-03 11:00:00)
17:18:27 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 10:00:00) in space (linearNDFast)
17:18:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:27 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 11:00:00) in space (linearNDFast)
17:18:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:27 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 10:00:00, weight 0.72) and
after (2025-07-03 11:00:00, weight 0.28) in time
17:18:27 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48472047935509 and -59.20148047373076 degrees.
17:18:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48472047935509 and -59.20148047373076 degrees.
17:18:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:27 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:27 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:27 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:27 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:27 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:27 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:27 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:27 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.146191 (min) 0.151994 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.275839 (min) 0.239655 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0201025 (min) 0.0169985 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.9617 (min) 11.879 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.28492 (min) -1.47623 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.1333 (min) 110.543 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.2893 (min) 16.19 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.4777 (min) 34.0397 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000316186 (min) 0.000471305 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:27 DEBUG opendrift:685: No elements hit coastline.
17:18:27 DEBUG opendrift:714: No elements hit seafloor.
17:18:27 DEBUG opendrift:1636: No elements to deactivate
17:18:27 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:27 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:27 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:27 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:18:27 DEBUG opendrift.models.chemicaldrift:1476: old species: [3]
17:18:27 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
17:18:27 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 425. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 40. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:27 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:27 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:27 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:27 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:27 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.10649592608081736
17:18:27 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:27 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:27 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:27 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:27 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:27 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:27 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:27 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:27 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(76), np.int64(0), np.int64(1), np.int64(423), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:27 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:27 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:27 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:27 DEBUG opendrift:2034: ======================================================================
17:18:27 INFO opendrift:2035: 2025-07-03 10:46:48.563089 - step 84 of 96 - 500 active elements (0 deactivated)
17:18:27 DEBUG opendrift:2041: 0 elements scheduled.
17:18:27 DEBUG opendrift:2043: ======================================================================
17:18:27 DEBUG opendrift:2054: 57.56541310873573 <- latitude -> 57.854729031627905
17:18:27 DEBUG opendrift:2054: 10.515944331727352 <- longitude -> 10.798530568093609
17:18:27 DEBUG opendrift:2054: -36.16198550571986 <- z -> -1.0692970448467647
17:18:27 DEBUG opendrift:2055: ---------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:27 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:27 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 10:00:00 (before)
2025-07-03 11:00:00 (after)
17:18:27 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 10:00:00) in space (linearNDFast)
17:18:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:27 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 11:00:00) in space (linearNDFast)
17:18:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:27 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 10:00:00, weight 0.22) and
after (2025-07-03 11:00:00, weight 0.78) in time
17:18:27 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48406675609463 and -59.20148047373076 degrees.
17:18:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48406675609463 and -59.20148047373076 degrees.
17:18:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:27 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:27 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:27 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:27 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:27 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:27 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:27 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:27 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.14983 (min) 0.190938 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.285645 (min) 0.260568 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0282669 (min) 0.0131524 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: x_wind: 11.5972 (min) 12.5531 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.26004 (min) -0.971322 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.2106 (min) 112.466 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.3092 (min) 16.0935 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5731 (min) 34.0349 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000384351 (min) 0.000436512 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:27 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:27 DEBUG opendrift:685: No elements hit coastline.
17:18:27 DEBUG opendrift:714: No elements hit seafloor.
17:18:27 DEBUG opendrift:1636: No elements to deactivate
17:18:27 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:27 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:27 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:27 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
17:18:27 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 3 0]
17:18:27 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 0 3]
17:18:27 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 429. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 41. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:27 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:27 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:27 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:27 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:27 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.11726655454385658
17:18:27 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:27 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:27 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:27 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:27 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:27 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:27 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:27 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:27 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(73), np.int64(0), np.int64(1), np.int64(426), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:27 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:27 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:27 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:27 DEBUG opendrift:2034: ======================================================================
17:18:27 INFO opendrift:2035: 2025-07-03 11:16:48.563089 - step 85 of 96 - 500 active elements (0 deactivated)
17:18:27 DEBUG opendrift:2041: 0 elements scheduled.
17:18:27 DEBUG opendrift:2043: ======================================================================
17:18:27 DEBUG opendrift:2054: 57.56541310873574 <- latitude -> 57.85894018028123
17:18:27 DEBUG opendrift:2054: 10.517693452704654 <- longitude -> 10.798530568093609
17:18:27 DEBUG opendrift:2054: -38.93307845388697 <- z -> -0.0825291449959864
17:18:27 DEBUG opendrift:2055: ---------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:27 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:27 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 11:00:00 (before)
2025-07-03 12:00:00 (after)
17:18:30 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:30 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:30 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:30 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:30 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:30 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:30 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 63x43x7) for time after (2025-07-03 12:00:00)
17:18:30 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 11:00:00) in space (linearNDFast)
17:18:30 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:30 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 12:00:00) in space (linearNDFast)
17:18:30 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:30 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 11:00:00, weight 0.72) and
after (2025-07-03 12:00:00, weight 0.28) in time
17:18:30 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:30 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.482317636104135 and -59.20148047373076 degrees.
17:18:30 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.482317636104135 and -59.20148047373076 degrees.
17:18:30 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:30 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:30 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:30 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:30 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:30 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:30 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:30 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:30 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:30 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:30 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:30 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:30 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:30 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:30 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:30 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:30 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:30 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:30 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:30 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:30 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:30 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:30 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.155158 (min) 0.272871 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.291131 (min) 0.200866 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.045952 (min) -0.000617766 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: x_wind: 12.1625 (min) 13.1154 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.23308 (min) -0.714376 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3633 (min) 114.53 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.2109 (min) 16.0751 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5419 (min) 34.0609 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000452906 (min) 0.000365861 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:30 DEBUG opendrift:685: No elements hit coastline.
17:18:30 DEBUG opendrift:719: Lifting 8 elements to seafloor.
17:18:30 DEBUG opendrift:1636: No elements to deactivate
17:18:30 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:30 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:30 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:30 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
17:18:30 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 3 0 3]
17:18:30 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0 3 0]
17:18:30 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 431. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 43. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:30 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:30 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:30 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:30 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:30 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.12608282755536623
17:18:30 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:30 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:30 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:30 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:548: 2 elements reached seafloor, interacting with bottom
17:18:30 DEBUG opendrift:719: Lifting 2 elements to seafloor.
17:18:30 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:30 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:30 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:30 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:30 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:30 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(73), np.int64(0), np.int64(1), np.int64(426), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:30 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:30 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:30 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:30 DEBUG opendrift:2034: ======================================================================
17:18:30 INFO opendrift:2035: 2025-07-03 11:46:48.563089 - step 86 of 96 - 500 active elements (0 deactivated)
17:18:30 DEBUG opendrift:2041: 0 elements scheduled.
17:18:30 DEBUG opendrift:2043: ======================================================================
17:18:30 DEBUG opendrift:2054: 57.56541310873574 <- latitude -> 57.86188167843196
17:18:30 DEBUG opendrift:2054: 10.517877556768335 <- longitude -> 10.798530568093604
17:18:30 DEBUG opendrift:2054: -38.9929201513011 <- z -> 0.0
17:18:30 DEBUG opendrift:2055: ---------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:30 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:30 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:30 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:30 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 11:00:00 (before)
2025-07-03 12:00:00 (after)
17:18:30 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 11:00:00) in space (linearNDFast)
17:18:30 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:30 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 12:00:00) in space (linearNDFast)
17:18:30 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:30 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 11:00:00, weight 0.22) and
after (2025-07-03 12:00:00, weight 0.78) in time
17:18:30 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:30 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.482133530961356 and -59.20148047373076 degrees.
17:18:30 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.482133530961356 and -59.20148047373076 degrees.
17:18:30 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:30 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:30 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:30 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:30 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:30 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:30 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:30 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:30 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:30 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:30 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:30 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:30 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:30 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:30 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:30 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:30 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:30 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:30 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:30 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:30 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:30 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:30 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.16181 (min) 0.192293 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.23897 (min) 0.250025 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0682344 (min) -0.0222528 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: x_wind: 12.4704 (min) 13.5427 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.21196 (min) -0.689396 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3978 (min) 115.899 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 13.8162 (min) 16.0951 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5645 (min) 34.0608 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000562355 (min) 0.000376233 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:30 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:30 DEBUG opendrift:685: No elements hit coastline.
17:18:30 DEBUG opendrift:719: Lifting 12 elements to seafloor.
17:18:30 DEBUG opendrift:1636: No elements to deactivate
17:18:30 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:30 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:30 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:30 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
17:18:30 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 3]
17:18:30 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 0]
17:18:30 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 435. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 44. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:30 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:30 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:30 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:30 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:30 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.13357328661589302
17:18:30 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:30 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:30 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:30 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:548: 4 elements reached seafloor, interacting with bottom
17:18:30 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:18:30 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:30 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:30 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:30 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:30 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:30 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:30 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(70), np.int64(0), np.int64(1), np.int64(429), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:30 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:30 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:30 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:30 DEBUG opendrift:2034: ======================================================================
17:18:30 INFO opendrift:2035: 2025-07-03 12:16:48.563089 - step 87 of 96 - 500 active elements (0 deactivated)
17:18:30 DEBUG opendrift:2041: 0 elements scheduled.
17:18:30 DEBUG opendrift:2043: ======================================================================
17:18:30 DEBUG opendrift:2054: 57.56541310873573 <- latitude -> 57.865922349006105
17:18:30 DEBUG opendrift:2054: 10.519780303060871 <- longitude -> 10.798530568093609
17:18:30 DEBUG opendrift:2054: -39.928932189941406 <- z -> -0.20726352235506829
17:18:30 DEBUG opendrift:2055: ---------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:30 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:30 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:30 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:30 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:30 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 12:00:00 (before)
2025-07-03 13:00:00 (after)
17:18:32 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:32 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:32 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:32 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:32 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:32 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:32 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 65x43x7) for time after (2025-07-03 13:00:00)
17:18:32 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 12:00:00) in space (linearNDFast)
17:18:32 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:32 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 13:00:00) in space (linearNDFast)
17:18:32 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:32 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 12:00:00, weight 0.72) and
after (2025-07-03 13:00:00, weight 0.28) in time
17:18:32 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:32 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.480230782090466 and -59.20148047373076 degrees.
17:18:32 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.480230782090466 and -59.20148047373076 degrees.
17:18:32 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:32 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:32 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:32 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:32 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:32 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:32 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:32 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:32 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:32 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:32 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:32 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:32 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:32 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:32 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:32 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:32 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:32 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:32 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:32 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:32 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:32 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:32 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.166913 (min) 0.214687 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.22141 (min) 0.27758 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0924415 (min) -0.0449985 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: x_wind: 12.7922 (min) 13.7904 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.13502 (min) -0.59172 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.5544 (min) 117.841 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 13.7113 (min) 16.1437 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.565 (min) 34.015 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000705141 (min) 0.000309881 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:32 DEBUG opendrift:685: No elements hit coastline.
17:18:32 DEBUG opendrift:719: Lifting 19 elements to seafloor.
17:18:32 DEBUG opendrift:1636: No elements to deactivate
17:18:32 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:32 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:32 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:32 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
17:18:32 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 3 0]
17:18:32 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 0 3]
17:18:32 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 436. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 46. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:32 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:32 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:32 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:32 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:32 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.13860115259985403
17:18:32 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:32 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:32 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:32 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:18:32 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:18:32 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:32 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:32 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:32 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:32 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:32 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(71), np.int64(0), np.int64(1), np.int64(428), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:32 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:32 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:32 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:32 DEBUG opendrift:2034: ======================================================================
17:18:32 INFO opendrift:2035: 2025-07-03 12:46:48.563089 - step 88 of 96 - 500 active elements (0 deactivated)
17:18:32 DEBUG opendrift:2041: 0 elements scheduled.
17:18:32 DEBUG opendrift:2043: ======================================================================
17:18:32 DEBUG opendrift:2054: 57.56541310873573 <- latitude -> 57.87040840278384
17:18:32 DEBUG opendrift:2054: 10.519595008778957 <- longitude -> 10.798530568093609
17:18:32 DEBUG opendrift:2054: -40.78958550666621 <- z -> -0.8052969093827489
17:18:32 DEBUG opendrift:2055: ---------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:32 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:32 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:32 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:32 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 12:00:00 (before)
2025-07-03 13:00:00 (after)
17:18:32 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 12:00:00) in space (linearNDFast)
17:18:32 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:32 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 13:00:00) in space (linearNDFast)
17:18:32 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:32 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 12:00:00, weight 0.22) and
after (2025-07-03 13:00:00, weight 0.78) in time
17:18:32 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:32 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48041607157427 and -59.20148047373076 degrees.
17:18:32 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48041607157427 and -59.20148047373076 degrees.
17:18:32 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:32 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:32 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:32 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:32 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:32 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:32 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:32 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:32 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:32 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:32 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:32 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:32 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:32 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:32 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:32 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:32 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:32 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:32 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:32 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:32 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:32 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:32 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.1708 (min) 0.304423 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.214488 (min) 0.242927 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.118177 (min) -0.0686158 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: x_wind: 13.07 (min) 14.0059 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.01428 (min) -0.445974 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.5577 (min) 120.009 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 13.7771 (min) 16.1128 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5719 (min) 34.0948 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00072198 (min) 0.00026737 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:32 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:32 DEBUG opendrift:685: No elements hit coastline.
17:18:32 DEBUG opendrift:719: Lifting 21 elements to seafloor.
17:18:32 DEBUG opendrift:1636: No elements to deactivate
17:18:32 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:32 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:32 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:32 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
17:18:32 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:32 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.14379120780910412
17:18:32 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:32 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:32 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:32 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:32 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:32 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:32 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:32 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:32 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(71), np.int64(0), np.int64(1), np.int64(428), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:32 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:32 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:32 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:32 DEBUG opendrift:2034: ======================================================================
17:18:32 INFO opendrift:2035: 2025-07-03 13:16:48.563089 - step 89 of 96 - 500 active elements (0 deactivated)
17:18:32 DEBUG opendrift:2041: 0 elements scheduled.
17:18:32 DEBUG opendrift:2043: ======================================================================
17:18:32 DEBUG opendrift:2054: 57.56541310873573 <- latitude -> 57.8741831548795
17:18:32 DEBUG opendrift:2054: 10.520425256725288 <- longitude -> 10.798530568093609
17:18:32 DEBUG opendrift:2054: -41.79232375433094 <- z -> -0.21760314541147263
17:18:32 DEBUG opendrift:2055: ---------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:32 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:32 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:32 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:32 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:32 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 13:00:00 (before)
2025-07-03 14:00:00 (after)
17:18:34 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:34 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:34 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:34 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:34 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:34 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:34 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 66x43x7) for time after (2025-07-03 14:00:00)
17:18:34 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 13:00:00) in space (linearNDFast)
17:18:34 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:34 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 14:00:00) in space (linearNDFast)
17:18:34 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:34 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 13:00:00, weight 0.72) and
after (2025-07-03 14:00:00, weight 0.28) in time
17:18:34 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:34 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.479585837900885 and -59.20148047373076 degrees.
17:18:34 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.479585837900885 and -59.20148047373076 degrees.
17:18:34 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:34 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:34 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:34 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:34 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:34 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:34 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:34 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:34 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:34 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:34 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:34 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:34 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:34 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:34 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:34 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:34 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:34 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:34 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:34 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:34 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:34 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:34 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.169081 (min) 0.311413 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.201835 (min) 0.278004 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.141299 (min) -0.0899261 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: x_wind: 13.2037 (min) 14.1708 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.71733 (min) -0.200531 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6311 (min) 121.918 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 13.9105 (min) 16.1587 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.6277 (min) 34.0804 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000795805 (min) 0.000267918 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:34 DEBUG opendrift:685: No elements hit coastline.
17:18:34 DEBUG opendrift:719: Lifting 21 elements to seafloor.
17:18:34 DEBUG opendrift:1636: No elements to deactivate
17:18:34 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:34 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:34 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:34 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:18:34 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
17:18:34 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
17:18:34 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 437. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 46. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:34 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:34 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:34 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:34 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:34 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.14643194777962038
17:18:34 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:34 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:34 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:18:34 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:18:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:34 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:34 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:34 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:34 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:34 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(70), np.int64(0), np.int64(1), np.int64(429), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:34 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:34 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:34 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:34 DEBUG opendrift:2034: ======================================================================
17:18:34 INFO opendrift:2035: 2025-07-03 13:46:48.563089 - step 90 of 96 - 500 active elements (0 deactivated)
17:18:34 DEBUG opendrift:2041: 0 elements scheduled.
17:18:34 DEBUG opendrift:2043: ======================================================================
17:18:34 DEBUG opendrift:2054: 57.56541310873573 <- latitude -> 57.87867592810651
17:18:34 DEBUG opendrift:2054: 10.519832007472628 <- longitude -> 10.798530568093609
17:18:34 DEBUG opendrift:2054: -43.124816536355304 <- z -> -0.09547065732665239
17:18:34 DEBUG opendrift:2055: ---------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:34 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:34 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:34 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:34 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 13:00:00 (before)
2025-07-03 14:00:00 (after)
17:18:34 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 13:00:00) in space (linearNDFast)
17:18:34 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:34 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 14:00:00) in space (linearNDFast)
17:18:34 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:34 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 13:00:00, weight 0.22) and
after (2025-07-03 14:00:00, weight 0.78) in time
17:18:34 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:34 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48017908375998 and -59.20148047373076 degrees.
17:18:34 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48017908375998 and -59.20148047373076 degrees.
17:18:34 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:34 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:34 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:34 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:34 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:34 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:34 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:34 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:34 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:34 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:34 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:34 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:34 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:34 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:34 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:34 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:34 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:34 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:34 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:34 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:34 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:34 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:34 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.1664 (min) 0.332747 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.19517 (min) 0.276725 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.16446 (min) -0.109426 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: x_wind: 13.3155 (min) 14.4981 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.29331 (min) 0.14475 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6007 (min) 124.319 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.0363 (min) 16.194 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.6133 (min) 34.0511 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000876981 (min) 0.000268737 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:34 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:34 DEBUG opendrift:685: No elements hit coastline.
17:18:34 DEBUG opendrift:719: Lifting 22 elements to seafloor.
17:18:34 DEBUG opendrift:1636: No elements to deactivate
17:18:34 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:34 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:34 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:34 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
17:18:34 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 3 0 0]
17:18:34 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 0 3 3]
17:18:34 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 439. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 48. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:34 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:34 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:34 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:34 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:34 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.15192700628776407
17:18:34 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:34 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:34 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:34 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:548: 2 elements reached seafloor, interacting with bottom
17:18:34 DEBUG opendrift:719: Lifting 2 elements to seafloor.
17:18:34 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:34 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:34 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:34 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:34 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:34 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:34 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(70), np.int64(0), np.int64(1), np.int64(429), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:34 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:34 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:34 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:34 DEBUG opendrift:2034: ======================================================================
17:18:34 INFO opendrift:2035: 2025-07-03 14:16:48.563089 - step 91 of 96 - 500 active elements (0 deactivated)
17:18:34 DEBUG opendrift:2041: 0 elements scheduled.
17:18:34 DEBUG opendrift:2043: ======================================================================
17:18:34 DEBUG opendrift:2054: 57.56541310873574 <- latitude -> 57.882648619196864
17:18:34 DEBUG opendrift:2054: 10.522346387791059 <- longitude -> 10.798530568093609
17:18:34 DEBUG opendrift:2054: -44.44941860169494 <- z -> -0.35986365993916025
17:18:34 DEBUG opendrift:2055: ---------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:34 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:34 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:34 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:34 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:34 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 14:00:00 (before)
2025-07-03 15:00:00 (after)
17:18:36 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:36 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:36 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:36 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:36 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:36 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:36 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 68x42x7) for time after (2025-07-03 15:00:00)
17:18:36 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 14:00:00) in space (linearNDFast)
17:18:36 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:36 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 15:00:00) in space (linearNDFast)
17:18:36 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:36 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 14:00:00, weight 0.72) and
after (2025-07-03 15:00:00, weight 0.28) in time
17:18:36 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:36 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4776647032489 and -59.20148047373076 degrees.
17:18:36 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4776647032489 and -59.20148047373076 degrees.
17:18:36 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:36 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:36 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:36 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:36 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:36 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:36 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:36 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:36 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:36 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:36 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:36 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:36 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:36 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:36 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:36 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:36 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:36 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:36 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:36 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:36 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:36 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:36 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.152338 (min) 0.356 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.193058 (min) 0.354948 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.183911 (min) -0.126405 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: x_wind: 13.4743 (min) 14.8937 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.9926 (min) 0.307641 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.7229 (min) 126.606 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.2225 (min) 16.2263 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.6077 (min) 34.0395 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00101402 (min) 0.000272663 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:36 DEBUG opendrift:685: No elements hit coastline.
17:18:36 DEBUG opendrift:719: Lifting 24 elements to seafloor.
17:18:36 DEBUG opendrift:1636: No elements to deactivate
17:18:36 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:36 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:36 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:36 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
17:18:36 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 3]
17:18:36 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0]
17:18:36 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 440. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 49. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:36 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:36 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:36 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:36 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:36 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.16030368083222774
17:18:36 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:36 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:36 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:548: 1 elements reached seafloor, interacting with bottom
17:18:36 DEBUG opendrift:719: Lifting 1 elements to seafloor.
17:18:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:36 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:36 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:36 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:36 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:36 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(70), np.int64(0), np.int64(1), np.int64(429), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:36 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:36 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:36 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:36 DEBUG opendrift:2034: ======================================================================
17:18:36 INFO opendrift:2035: 2025-07-03 14:46:48.563089 - step 92 of 96 - 500 active elements (0 deactivated)
17:18:36 DEBUG opendrift:2041: 0 elements scheduled.
17:18:36 DEBUG opendrift:2043: ======================================================================
17:18:36 DEBUG opendrift:2054: 57.56541310873573 <- latitude -> 57.88838502629514
17:18:36 DEBUG opendrift:2054: 10.522237764415541 <- longitude -> 10.798530568093609
17:18:36 DEBUG opendrift:2054: -46.48357932412015 <- z -> 0.0
17:18:36 DEBUG opendrift:2055: ---------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:36 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:36 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:36 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:36 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 14:00:00 (before)
2025-07-03 15:00:00 (after)
17:18:36 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 14:00:00) in space (linearNDFast)
17:18:36 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:36 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 15:00:00) in space (linearNDFast)
17:18:36 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:36 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 14:00:00, weight 0.22) and
after (2025-07-03 15:00:00, weight 0.78) in time
17:18:36 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:36 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47777333205705 and -59.20148047373076 degrees.
17:18:36 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47777333205705 and -59.20148047373076 degrees.
17:18:36 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:36 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:36 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:36 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:36 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:36 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:36 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:36 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:36 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:36 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:36 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:36 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:36 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:36 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:36 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:36 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:36 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:36 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:36 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:36 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:36 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:36 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:36 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.134005 (min) 0.416666 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.129714 (min) 0.352707 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.204114 (min) -0.141405 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: x_wind: 13.5322 (min) 15.3204 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.7972 (min) 0.350832 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.7229 (min) 130.248 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.2895 (min) 16.2563 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5993 (min) 34.0468 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00115311 (min) 0.000274095 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:36 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:36 DEBUG opendrift:685: No elements hit coastline.
17:18:36 DEBUG opendrift:719: Lifting 26 elements to seafloor.
17:18:36 DEBUG opendrift:1636: No elements to deactivate
17:18:36 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:36 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:36 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:36 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
17:18:36 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 0 0 0 0]
17:18:36 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3 3 3 3]
17:18:36 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 444. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 50. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:36 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:36 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:36 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:36 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:36 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.169623693665704
17:18:36 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:36 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:36 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:548: 4 elements reached seafloor, interacting with bottom
17:18:36 DEBUG opendrift:719: Lifting 4 elements to seafloor.
17:18:36 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:36 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:36 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:36 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:36 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:36 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:36 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(67), np.int64(0), np.int64(1), np.int64(432), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:36 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:36 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:36 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:36 DEBUG opendrift:2034: ======================================================================
17:18:36 INFO opendrift:2035: 2025-07-03 15:16:48.563089 - step 93 of 96 - 500 active elements (0 deactivated)
17:18:36 DEBUG opendrift:2041: 0 elements scheduled.
17:18:36 DEBUG opendrift:2043: ======================================================================
17:18:36 DEBUG opendrift:2054: 57.56541310873573 <- latitude -> 57.89408519906869
17:18:36 DEBUG opendrift:2054: 10.52267849949411 <- longitude -> 10.798530568093609
17:18:36 DEBUG opendrift:2054: -48.17898869117361 <- z -> -0.8259138276981233
17:18:36 DEBUG opendrift:2055: ---------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:36 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:36 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:36 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:36 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:36 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 15:00:00 (before)
2025-07-03 16:00:00 (after)
17:18:38 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:38 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:38 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:38 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:38 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:38 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:38 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 70x42x7) for time after (2025-07-03 16:00:00)
17:18:38 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 15:00:00) in space (linearNDFast)
17:18:38 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:38 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 16:00:00) in space (linearNDFast)
17:18:38 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:38 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 15:00:00, weight 0.72) and
after (2025-07-03 16:00:00, weight 0.28) in time
17:18:38 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:38 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47733259003478 and -59.20148047373076 degrees.
17:18:38 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47733259003478 and -59.20148047373076 degrees.
17:18:38 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:38 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:38 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:38 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:38 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:38 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:38 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:38 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:38 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:38 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:38 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:38 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:38 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:38 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:38 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:38 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:38 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:38 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:38 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:38 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:38 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:38 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:38 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.127023 (min) 0.468887 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.148078 (min) 0.334962 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.220216 (min) -0.151619 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: x_wind: 13.4817 (min) 15.4223 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.57852 (min) 0.451944 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.7229 (min) 134.346 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.1127 (min) 16.2807 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5934 (min) 34.0635 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00124602 (min) 0.000269385 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:38 DEBUG opendrift:685: No elements hit coastline.
17:18:38 DEBUG opendrift:719: Lifting 30 elements to seafloor.
17:18:38 DEBUG opendrift:1636: No elements to deactivate
17:18:38 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:38 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:38 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:38 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
17:18:38 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:38 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.17187849812573486
17:18:38 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:38 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:38 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 6 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:38 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:38 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:38 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:38 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(67), np.int64(0), np.int64(1), np.int64(432), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:38 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:38 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:38 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:38 DEBUG opendrift:2034: ======================================================================
17:18:38 INFO opendrift:2035: 2025-07-03 15:46:48.563089 - step 94 of 96 - 500 active elements (0 deactivated)
17:18:38 DEBUG opendrift:2041: 0 elements scheduled.
17:18:38 DEBUG opendrift:2043: ======================================================================
17:18:38 DEBUG opendrift:2054: 57.56541310873573 <- latitude -> 57.89949845155461
17:18:38 DEBUG opendrift:2054: 10.524020598187388 <- longitude -> 10.798530568093609
17:18:38 DEBUG opendrift:2054: -50.430248560128334 <- z -> -0.013228696538534201
17:18:38 DEBUG opendrift:2055: ---------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:38 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:38 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:38 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:38 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 15:00:00 (before)
2025-07-03 16:00:00 (after)
17:18:38 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 15:00:00) in space (linearNDFast)
17:18:38 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:38 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 16:00:00) in space (linearNDFast)
17:18:38 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:38 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 15:00:00, weight 0.22) and
after (2025-07-03 16:00:00, weight 0.78) in time
17:18:38 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:38 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47599049521165 and -59.20148047373076 degrees.
17:18:38 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47599049521165 and -59.20148047373076 degrees.
17:18:38 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:38 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:38 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:38 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:38 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:38 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:38 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:38 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:38 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:38 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:38 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:38 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:38 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:38 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:38 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:38 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:38 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:38 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:38 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:38 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:38 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:38 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:38 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.11781 (min) 0.514482 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.147428 (min) 0.425222 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.231501 (min) -0.158077 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: x_wind: 13.3463 (min) 15.2626 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.3408 (min) 0.597156 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.7229 (min) 138.771 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.2555 (min) 16.3007 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5899 (min) 34.0688 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00128021 (min) 0.000367263 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:38 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:38 DEBUG opendrift:685: No elements hit coastline.
17:18:38 DEBUG opendrift:719: Lifting 30 elements to seafloor.
17:18:38 DEBUG opendrift:1636: No elements to deactivate
17:18:38 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:38 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:38 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:38 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
17:18:38 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 3]
17:18:38 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 0]
17:18:38 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 446. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 51. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:38 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:38 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:38 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:38 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:38 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.16834117724756711
17:18:38 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:38 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:38 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:38 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:548: 2 elements reached seafloor, interacting with bottom
17:18:38 DEBUG opendrift:719: Lifting 2 elements to seafloor.
17:18:38 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:38 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:38 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:38 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:38 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:38 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:38 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(66), np.int64(0), np.int64(1), np.int64(433), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:38 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:38 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:38 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:38 DEBUG opendrift:2034: ======================================================================
17:18:38 INFO opendrift:2035: 2025-07-03 16:16:48.563089 - step 95 of 96 - 500 active elements (0 deactivated)
17:18:38 DEBUG opendrift:2041: 0 elements scheduled.
17:18:38 DEBUG opendrift:2043: ======================================================================
17:18:38 DEBUG opendrift:2054: 57.56541310873573 <- latitude -> 57.90637053182143
17:18:38 DEBUG opendrift:2054: 10.523186046610851 <- longitude -> 10.798530568093605
17:18:38 DEBUG opendrift:2054: -52.279467353467275 <- z -> -0.14061957021067162
17:18:38 DEBUG opendrift:2055: ---------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:38 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:38 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:38 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:38 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:38 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 16:00:00 (before)
2025-07-03 17:00:00 (after)
17:18:40 DEBUG opendrift.readers.basereader.variables:639: Checking sea_floor_depth_below_sea_level for invalid values
17:18:40 DEBUG opendrift.readers.basereader.variables:639: Checking x_wind for invalid values
17:18:40 DEBUG opendrift.readers.basereader.variables:639: Checking y_wind for invalid values
17:18:40 DEBUG opendrift.readers.basereader.variables:639: Checking x_sea_water_velocity for invalid values
17:18:40 DEBUG opendrift.readers.basereader.variables:639: Checking y_sea_water_velocity for invalid values
17:18:40 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['y_sea_water_velocity', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
17:18:40 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 72x42x8) for time after (2025-07-03 17:00:00)
17:18:40 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 16:00:00) in space (linearNDFast)
17:18:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:40 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 17:00:00) in space (linearNDFast)
17:18:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:40 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 16:00:00, weight 0.72) and
after (2025-07-03 17:00:00, weight 0.28) in time
17:18:40 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.476825034822 and -59.20148047373076 degrees.
17:18:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.476825034822 and -59.20148047373076 degrees.
17:18:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:40 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:40 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:40 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:40 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:40 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:40 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:40 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:40 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.108756 (min) 0.557743 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.137618 (min) 0.359649 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.240344 (min) -0.161995 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: x_wind: 13.1984 (min) 15.1538 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.01671 (min) 0.705581 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.7229 (min) 144.989 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.3505 (min) 16.3185 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5884 (min) 34.0415 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.0013691 (min) 0.0002745 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:40 DEBUG opendrift:685: No elements hit coastline.
17:18:40 DEBUG opendrift:719: Lifting 33 elements to seafloor.
17:18:40 DEBUG opendrift:1636: No elements to deactivate
17:18:40 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:40 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:40 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:40 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
17:18:40 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 3 0]
17:18:40 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0 3]
17:18:40 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 448. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 52. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:40 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:40 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:40 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:40 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:40 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.1659828032813743
17:18:40 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:40 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:40 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:548: 2 elements reached seafloor, interacting with bottom
17:18:40 DEBUG opendrift:719: Lifting 2 elements to seafloor.
17:18:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:40 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:40 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:40 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:40 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:40 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(65), np.int64(0), np.int64(1), np.int64(434), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:40 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:40 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:40 DEBUG opendrift:856: to be seeded: 0, already seeded 500
17:18:40 DEBUG opendrift:2034: ======================================================================
17:18:40 INFO opendrift:2035: 2025-07-03 16:46:48.563089 - step 96 of 96 - 500 active elements (0 deactivated)
17:18:40 DEBUG opendrift:2041: 0 elements scheduled.
17:18:40 DEBUG opendrift:2043: ======================================================================
17:18:40 DEBUG opendrift:2054: 57.56541310873573 <- latitude -> 57.91218287790244
17:18:40 DEBUG opendrift:2054: 10.523175490711317 <- longitude -> 10.798530568093605
17:18:40 DEBUG opendrift:2054: -54.0936499590731 <- z -> -0.7837823270258615
17:18:40 DEBUG opendrift:2055: ---------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
17:18:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
17:18:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:40 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
17:18:40 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-07-03 16:00:00 (before)
2025-07-03 17:00:00 (after)
17:18:40 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-07-03 16:00:00) in space (linearNDFast)
17:18:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:40 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-07-03 17:00:00) in space (linearNDFast)
17:18:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
17:18:40 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-07-03 16:00:00, weight 0.22) and
after (2025-07-03 17:00:00, weight 0.78) in time
17:18:40 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
17:18:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47683559596342 and -59.20148047373076 degrees.
17:18:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47683559596342 and -59.20148047373076 degrees.
17:18:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
17:18:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
17:18:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:40 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from constant_reader covering 500 elements
17:18:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:40 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:40 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:40 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:40 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:40 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
17:18:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
17:18:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
17:18:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
17:18:40 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:40 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.10204 (min) 0.599173 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.132577 (min) 0.384023 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.245263 (min) -0.163919 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: x_wind: 13.0891 (min) 15.0868 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.639073 (min) 0.769181 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.7229 (min) 150.596 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 14.4717 (min) 16.3344 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 31.5885 (min) 34.0137 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00133579 (min) 0.000273757 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:40 DEBUG opendrift:685: No elements hit coastline.
17:18:40 DEBUG opendrift:719: Lifting 35 elements to seafloor.
17:18:40 DEBUG opendrift:1636: No elements to deactivate
17:18:40 DEBUG opendrift:2089: Calling ChemicalDrift.update()
17:18:40 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
17:18:40 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
17:18:40 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
17:18:40 DEBUG opendrift.models.chemicaldrift:1476: old species: [3]
17:18:40 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
17:18:40 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 448. 0.]
[ 0. 0. 0. 0. 0.]
[ 12. 0. 0. 38. 0.]
[ 53. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
17:18:40 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:40 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:40 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
17:18:40 DEBUG opendrift.models.oceandrift:440: Using functional expression for diffusivity
17:18:40 DEBUG opendrift.models.oceandrift:445: Diffusivities are in range 0.0 to 0.16459385062544865
17:18:40 DEBUG opendrift.models.oceandrift:464: TSprofiles deactivated for vertical mixing
17:18:40 DEBUG opendrift.models.oceandrift:478: Vertical mixing module:windspeed_Large1994
17:18:40 DEBUG opendrift.models.oceandrift:481: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 5 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 1 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 3 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 2 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 7 elements penetrated seafloor, lifting up
17:18:40 DEBUG opendrift.models.oceandrift:528: 4 elements penetrated seafloor, lifting up
17:18:40 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
17:18:40 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
17:18:40 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
17:18:40 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
17:18:40 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(66), np.int64(0), np.int64(1), np.int64(433), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
17:18:40 DEBUG opendrift.models.oceandrift:321: Vertical advection, including elements at surface
17:18:40 DEBUG opendrift:1587: Horizontal diffusivity is 0, no random walk.
17:18:40 DEBUG opendrift:2127: Cleaning up
17:18:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
17:18:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
17:18:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
17:18:40 DEBUG opendrift.readers.basereader.variables:761: Fetching variables from global_landmask covering 500 elements
17:18:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
17:18:40 DEBUG opendrift.readers.basereader.variables:639: Checking land_binary_mask for invalid values
17:18:40 DEBUG opendrift.readers.basereader.variables:797: Reader projection is latlon - rotation of vectors is not needed.
17:18:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
17:18:40 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
17:18:40 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
17:18:40 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
17:18:40 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
17:18:40 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
17:18:40 DEBUG opendrift:685: No elements hit coastline.
17:18:40 DEBUG opendrift:2213: Updating minval and maxval
17:18:40 DEBUG opendrift:2293: Writing to file
17:18:40 DEBUG opendrift:1636: No elements to deactivate
17:18:40 DEBUG opendrift:101: Changed mode from Mode.Run to Mode.Result
Print and plot results
print('Final speciation:')
for isp,sp in enumerate(o.name_species):
print ('{:32}: {:>6}'.format(sp,sum(o.elements.specie==isp)))
print('Number of transformations:')
for isp in range(o.nspecies):
print('{}'.format(['{:>9}'.format(np.int32(item)) for item in o.ntransformations[isp,:]]) )
m_pre = o.result.mass.isel(time=-1).sum()
m_deg = o.result.mass_degraded.isel(time=-1).sum()
m_vol = o.result.mass_volatilized.isel(time=-1).sum()
m_tot = m_pre + m_deg + m_vol
print('Mass budget for target chemical:')
print('mass preserved : {:.3f}'.format(m_pre * 1e-6),' g {:.3f}'.format(m_pre/m_tot*100),'%')
print('mass degraded : {:.3f}'.format(m_deg * 1e-6),' g {:.3f}'.format(m_deg/m_tot*100),'%')
print('mass volatilized : {:.3f}'.format(m_vol * 1e-6),' g {:.3f}'.format(m_vol/m_tot*100),'%')
legend=['dissolved', '', 'SPM', 'sediment', '']
o.animation_profile(color='specie',
markersize='mass',
markersize_scaling=30,
alpha=.5,
vmin=0,vmax=o.nspecies-1,
legend = legend,
legend_loc = 3,
fps = 10
)
Final speciation:
LMM : 66
Humic colloid : 0
Particle reversible : 1
Sediment reversible : 433
Sediment slowly reversible : 0
Number of transformations:
[' 0', ' 0', ' 0', ' 448', ' 0']
[' 0', ' 0', ' 0', ' 0', ' 0']
[' 12', ' 0', ' 0', ' 38', ' 0']
[' 53', ' 0', ' 0', ' 0', ' 0']
[' 0', ' 0', ' 0', ' 0', ' 0']
Mass budget for target chemical:
mass preserved : 0.180 g 17.962 %
mass degraded : 0.818 g 81.840 %
mass volatilized : 0.002 g 0.197 %
17:18:41 DEBUG opendrift:3001: Saving animation..
17:18:41 INFO opendrift:4553: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_0.gif...
17:19:01 DEBUG opendrift:4591: MPLBACKEND = agg
17:19:01 DEBUG opendrift:4592: DISPLAY = None
17:19:01 DEBUG opendrift:4593: Time to save animation: 0:00:20.015120
17:19:01 INFO opendrift:3204: Time to make animation: 0:00:20.176258
o.animation(color='specie',
markersize='mass',
markersize_scaling=100,
alpha=.5,
vmin=0,vmax=o.nspecies-1,
colorbar=False,
fast = True,
legend = legend,
legend_loc = 3,
fps=10
)
17:19:01 DEBUG opendrift:2360: Setting up map: corners=None, fast=True, lscale=None
17:19:01 WARNING opendrift:2391: Plotting fast. This will make your plots less accurate.
17:19:02 DEBUG opendrift:3001: Saving animation..
17:19:02 INFO opendrift:4553: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_1.gif...
17:20:39 DEBUG opendrift:4591: MPLBACKEND = agg
17:20:39 DEBUG opendrift:4592: DISPLAY = None
17:20:39 DEBUG opendrift:4593: Time to save animation: 0:01:37.039335
17:20:39 INFO opendrift:2994: Time to make animation: 0:01:38.775530
o.plot_mass(legend = legend,
time_unit = 'hours',
title = 'Chemical mass budget')
dissolved : 0.011532589793205261g (6.42041535275644%)
SPM : 0.0020000000949949026g (1.113438659110648%)
sediment : 0.16609114408493042g (92.46614598813291%)
/root/project/opendrift/models/chemicaldrift.py:3369: UserWarning: set_ticklabels() should only be used with a fixed number of ticks, i.e. after set_ticks() or using a FixedLocator.
ax.axes.get_xaxis().set_ticklabels(np.round(ax.axes.get_xticks() * time_conversion_factor))
Total running time of the script: (4 minutes 1.624 seconds)