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ChemicalDrift - Transport and fate of organic compounds
from opendrift.readers import reader_netCDF_CF_generic
from opendrift.models.chemicaldrift import ChemicalDrift
from opendrift.readers.reader_constant import Reader as ConstantReader
from datetime import timedelta, datetime
import matplotlib.pyplot as plt
import numpy as np
o = ChemicalDrift(loglevel=0, seed=0)
# Norkyst
reader_norkyst = reader_netCDF_CF_generic.Reader('https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be')
mixed_layer = ConstantReader({'ocean_mixed_layer_thickness': 40})
o.add_reader([reader_norkyst,mixed_layer])
o.set_config('drift:vertical_mixing', True)
o.set_config('vertical_mixing:diffusivitymodel', 'windspeed_Large1994')
o.set_config('chemical:particle_diameter',30.e-6) # m
o.set_config('chemical:particle_diameter_uncertainty',5.e-6) # m
o.set_config('chemical:sediment:resuspension_critvel',0.15) # m/s
o.set_config('chemical:transformations:volatilization', True)
o.set_config('chemical:transformations:degradation', True)
o.set_config('chemical:transformations:degradation_mode', 'OverallRateConstants')
o.set_config('seed:LMM_fraction',.9)
o.set_config('seed:particle_fraction',.1)
o.set_config('general:coastline_action', 'previous')
o.init_chemical_compound("Phenanthrene")
# Modify half-life times with unrealistic values for this demo
o.set_config('chemical:transformations:t12_W_tot', 6.) # hours
o.set_config('chemical:transformations:t12_S_tot', 12.) # hours
o.list_configspec()
09:58:00 DEBUG opendrift.config:168: Adding 18 config items from __init__
09:58:00 DEBUG opendrift.config:178: Overwriting config item readers:max_number_of_fails
09:58:00 DEBUG opendrift.config:168: Adding 13 config items from __init__
09:58:00 INFO opendrift:509: OpenDriftSimulation initialised (version 1.14.2 / v1.14.2-59-g60ee835)
09:58:00 DEBUG opendrift.config:168: Adding 17 config items from oceandrift
09:58:00 DEBUG opendrift.config:178: Overwriting config item seed:z
09:58:00 DEBUG opendrift.config:168: Adding 71 config items from chemicaldrift
09:58:00 INFO opendrift.readers:61: Opening file with xr.open_dataset
09:58:00 DEBUG gribapi.bindings:58: eccodes lib search: trying to find binary wheel
09:58:00 DEBUG gribapi.bindings:65: eccodes lib search: looking in /opt/conda/envs/opendrift/lib/python3.13/site-packages/eccodes.libs
09:58:00 DEBUG gribapi.bindings:65: eccodes lib search: looking in /opt/conda/envs/opendrift/lib/python3.13/site-packages/eccodes/.dylibs
09:58:00 DEBUG gribapi.bindings:65: eccodes lib search: looking in /opt/conda/envs/opendrift/lib/python3.13/site-packages/eccodes
09:58:00 DEBUG gribapi.bindings:91: eccodes lib search: did not find library from wheel; try to find as separate lib
09:58:00 DEBUG gribapi.bindings:99: eccodes lib search: findlibs returned /opt/conda/envs/opendrift/lib/libeccodes.so
09:58:03 DEBUG opendrift.readers.reader_netCDF_CF_generic:128: Finding coordinate variables.
09:58:03 DEBUG opendrift.readers.reader_netCDF_CF_generic:143: Parsing CF grid mapping dictionary: {'grid_mapping_name': 'polar_stereographic', 'straight_vertical_longitude_from_pole': np.float64(70.0), 'latitude_of_projection_origin': np.float64(90.0), 'standard_parallel': np.float64(60.0), 'false_easting': np.float64(3192800.0), 'false_northing': np.float64(1784000.0), 'semi_major_axis': np.float64(6378137.0), 'semi_minor_axis': np.float64(6356752.3142), 'proj4': '+proj=stere +lat_0=90 +lat_ts=60 +lon_0=70 +x_0=3192800 +y_0=1784000 +a=6378137 +b=6356752.3142 +units=m +no_defs +type=crs'}
09:58:03 DEBUG pyproj:40: PROJ_ERROR: proj_create: several objects matching this name: Krovak (Greenwich), Equal Earth Greenwich, Laborde Grid (Greenwich), Modified Krovak (Greenwich), Krovak East North (Greenwich), Modified Krovak East North (Greenwich), ...
09:58:03 INFO opendrift.readers.reader_netCDF_CF_generic:332: Detected dimensions: {'x': 'X', 'y': 'Y', 'z': 'depth', 'time': 'time'}
09:58:03 DEBUG opendrift.readers.reader_netCDF_CF_generic:368: Skipped variables without standard_name: ['angle', 'tke', 'ubar', 'vbar']
09:58:03 DEBUG opendrift.readers.basereader.variables:612: Setting buffer size 25 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 5 m/s and time span of 1:00:00
09:58:03 DEBUG opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
09:58:03 DEBUG opendrift.readers.basereader.variables:567: Adding variable mapping: ['x_wind', 'y_wind'] -> wind_speed
09:58:03 DEBUG opendrift.readers.basereader.variables:567: Adding variable mapping: ['x_sea_water_velocity', 'y_sea_water_velocity'] -> sea_water_speed
09:58:03 DEBUG opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
09:58:03 DEBUG opendrift.models.basemodel.environment:312: Added reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:03 DEBUG opendrift.models.basemodel.environment:312: Added reader constant_reader
environment:constant:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:sea_surface_height [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_surface_height [0] float min: None, max: None [None] Fallback value for s...
environment:constant:x_wind [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:x_wind [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:y_wind [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:y_wind [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:fallback:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:constant:sea_floor_depth_below_sea_level [None] float min: -20, max: 12000 [None] Depth of seafloor...
environment:fallback:sea_floor_depth_below_sea_level [10000] float min: -20, max: 12000 [None] Depth of seafloor...
environment:constant:ocean_vertical_diffusivity [None] float min: 0, max: 1 [None] Use constant value f...
environment:fallback:ocean_vertical_diffusivity [0.0001] float min: 0, max: 1 [None] Fallback value for o...
environment:constant:sea_water_temperature [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_temperature [10] float min: None, max: None [None] Fallback value for s...
environment:constant:sea_water_salinity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_salinity [34] float min: None, max: None [None] Fallback value for s...
environment:constant:upward_sea_water_velocity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:upward_sea_water_velocity [0] float min: None, max: None [None] Fallback value for u...
environment:constant:spm [None] float min: None, max: None [None] Use constant value f...
environment:fallback:spm [1] float min: None, max: None [None] Fallback value for s...
environment:constant:ocean_mixed_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:ocean_mixed_layer_thickness [50] float min: None, max: None [None] Fallback value for o...
environment:constant:active_sediment_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:active_sediment_layer_thickness [0.03] float min: None, max: None [None] Fallback value for a...
environment:constant:doc [None] float min: None, max: None [None] Use constant value f...
environment:fallback:doc [0.0] float min: None, max: None [None] Fallback value for d...
environment:constant:sea_water_ph_reported_on_total_scale [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_ph_reported_on_total_scale [8.1] float min: None, max: None [None] Fallback value for s...
environment:constant:pH_sediment [None] float min: None, max: None [None] Use constant value f...
environment:fallback:pH_sediment [6.9] float min: None, max: None [None] Fallback value for p...
general:use_auto_landmask [True] bool A built-in GSHHG glo...
drift:current_uncertainty [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:current_uncertainty_uniform [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:max_speed [2.0] float min: 0, max: inf [seconds] Typical maximum spee...
readers:max_number_of_fails [1] int min: 0, max: 1000000.0 [number] Readers are discarde...
general:simulation_name [] str min length 0, max length 64 Name of simulation...
general:coastline_action [previous] enum ['none', 'stranding', 'previous'] None means that obje...
general:coastline_approximation_precision [0.001] float min: 0.0001, max: 0.005 [degrees] The precision of the...
general:time_step_minutes [60] float min: 0.01, max: 1440 [minutes] Calculation time ste...
general:time_step_output_minutes [None] float min: 1, max: 1440 [minutes] Output time step, i....
seed:ocean_only [True] bool If True, elements se...
seed:number [1] int min: 1, max: 100000000 [1] The number of elemen...
drift:max_age_seconds [None] float min: 0, max: inf [seconds] Elements will be dea...
drift:advection_scheme [euler] enum ['euler', 'runge-kutta', 'runge-kutta4'] Numerical advection ...
drift:horizontal_diffusivity [0] float min: 0, max: 100000 [m2/s] Add horizontal diffu...
drift:profiles_depth [50] float min: 0, max: None [meters] Environment profiles...
drift:wind_uncertainty [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:relative_wind [False] bool If True, wind drift ...
drift:deactivate_north_of [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_south_of [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_east_of [None] float min: -360, max: 360 [degrees] Elements are deactiv...
drift:deactivate_west_of [None] float min: -360, max: 360 [degrees] Elements are deactiv...
seed:origin_marker [0] float min: None, max: None [None] An integer kept cons...
seed:z [0] float min: -10000, max: 0 [m] Depth below sea leve...
seed:wind_drift_factor [0.02] float min: None, max: None [1] Elements at surface ...
seed:current_drift_factor [1] float min: None, max: None [1] Elements are moved w...
seed:terminal_velocity [0.0] float min: None, max: None [m/s] Terminal rise/sinkin...
seed:diameter [0.0] float min: None, max: None [m] Seeding value of dia...
seed:density [2650.0] float min: None, max: None [kg/m^3] Seeding value of den...
seed:specie [0] float min: None, max: None [] Seeding value of spe...
seed:mass [1000.0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_water [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_sediment [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_volatilized [0] float min: None, max: None [ug] Seeding value of mas...
drift:vertical_advection [True] bool Advect elements with...
drift:vertical_advection_at_surface [True] bool If vertical advectio...
drift:vertical_mixing [True] bool Activate vertical mi...
drift:vertical_mixing_at_surface [True] bool If vertical mixing i...
vertical_mixing:timestep [60] float min: 0.1, max: 3600 [seconds] Time step used for i...
vertical_mixing:diffusivitymodel [windspeed_Large1994] enum ['environment', 'stepfunction', 'windspeed_Sundby1983', 'windspeed_Large1994', 'gls_tke', 'constant'] Algorithm/source use...
vertical_mixing:background_diffusivity [1.2e-05] float min: 0, max: 1 [m2s-1] Background diffusivi...
vertical_mixing:TSprofiles [False] bool Update T and S profi...
drift:wind_drift_depth [0.1] float min: 0, max: 10 [meters] The direct wind drif...
drift:stokes_drift [True] bool Advection elements w...
drift:stokes_drift_profile [Phillips] enum ['monochromatic', 'exponential', 'Phillips', 'windsea_swell'] Algorithm to calcula...
drift:use_tabularised_stokes_drift [False] bool If True, Stokes drif...
drift:tabularised_stokes_drift_fetch [25000] enum ['5000', '25000', '50000'] The fetch length whe...
general:seafloor_action [lift_to_seafloor] enum ['none', 'lift_to_seafloor', 'deactivate', 'previous'] "deactivate": elemen...
drift:truncate_ocean_model_below_m [None] float min: 0, max: 10000 [m] Ocean model data are...
seed:seafloor [False] bool Elements are seeded ...
chemical:transfer_setup [organics] enum ['Sandnesfj_Al', 'metals', '137Cs_rev', 'custom', 'organics'] ...
chemical:dynamic_partitioning [True] bool Toggle dynamic parti...
chemical:slowly_fraction [False] bool ...
chemical:irreversible_fraction [False] bool ...
chemical:dissolved_diameter [0] float min: 0, max: 0.0001 [m] ...
chemical:particle_diameter [3e-05] float min: 0, max: 0.0001 [m] ...
chemical:particle_concentration_half_depth [20] float min: 0, max: 100 [m] ...
chemical:doc_concentration_half_depth [1000] float min: 0, max: 1000 [m] ...
chemical:particle_diameter_uncertainty [5e-06] float min: 0, max: 0.0001 [m] ...
seed:LMM_fraction [0.9] float min: 0, max: 1 [] ...
seed:particle_fraction [0.1] float min: 0, max: 1 [] ...
chemical:species:LMM [True] bool Toggle LMM species...
chemical:species:LMMcation [False] bool ...
chemical:species:LMManion [False] bool ...
chemical:species:Colloid [False] bool ...
chemical:species:Humic_colloid [False] bool ...
chemical:species:Polymer [False] bool ...
chemical:species:Particle_reversible [True] bool ...
chemical:species:Particle_slowly_reversible [False] bool ...
chemical:species:Particle_irreversible [False] bool ...
chemical:species:Sediment_reversible [True] bool ...
chemical:species:Sediment_slowly_reversible [False] bool ...
chemical:species:Sediment_irreversible [False] bool ...
chemical:transformations:Kd [2.0] float min: 0, max: 1000000000.0 [m3/kg] ...
chemical:transformations:S0 [0.0] float min: 0, max: 100 [PSU] parameter controllin...
chemical:transformations:Dc [1.16e-05] float min: 0, max: 1000000.0 [] ...
chemical:transformations:slow_coeff [0] float min: 0, max: 1000000.0 [] ...
chemical:transformations:volatilization [True] bool Chemical is evaporat...
chemical:transformations:degradation [True] bool Chemical mass is deg...
chemical:transformations:degradation_mode [OverallRateConstants] enum ['OverallRateConstants'] ...
chemical:transformations:dissociation [nondiss] enum ['nondiss', 'acid', 'base', 'amphoter'] ...
chemical:transformations:LogKOW [4.505] float min: -3, max: 10 [Log L/Kg] ...
chemical:transformations:TrefKOW [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_KOC_Sed [-24900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:DeltaH_KOC_DOM [-25900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:Setchenow [0.3026] float min: 0, max: 1 [L/mol] ...
chemical:transformations:pKa_acid [-1] float min: -1, max: 14 [] ...
chemical:transformations:pKa_base [-1] float min: -1, max: 14 [] ...
chemical:transformations:KOC_DOM [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:KOC_sed [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:fOC_SPM [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:fOC_sed [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:aggregation_rate [0] float min: 0, max: 1 [s-1] ...
chemical:transformations:t12_W_tot [6.0] float min: 1, max: None [hours] half life in water, ...
chemical:transformations:Tref_kWt [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kWt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:t12_S_tot [12.0] float min: 1, max: None [hours] half life in sedimen...
chemical:transformations:Tref_kSt [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kSt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:MolWt [178.226] float min: 50, max: 1000 [amu] molecular weight...
chemical:transformations:Henry [4.294e-05] float min: None, max: None [atm m3 mol-1] Henry constant...
chemical:transformations:Vpress [0.0222] float min: None, max: None [Pa] Vapour pressure...
chemical:transformations:Tref_Vpress [25.0] float min: None, max: None [C] Vapour pressure ref ...
chemical:transformations:DeltaH_Vpress [71733.0] float min: -100000.0, max: 115000.0 [J/mol] Enthalpy of volatili...
chemical:transformations:Solub [1.09] float min: None, max: None [g/m3] Solubility...
chemical:transformations:Tref_Solub [25.0] float min: None, max: None [C] Solubility ref temp...
chemical:transformations:DeltaH_Solub [34800.0] float min: -100000.0, max: 100000.0 [J/mol] Enthalpy of solubili...
chemical:sediment:mixing_depth [0.03] float min: 0, max: 100 [m] ...
chemical:sediment:density [2600] float min: 0, max: 10000 [kg/m3] ...
chemical:sediment:effective_fraction [0.9] float min: 0, max: 1 [] ...
chemical:sediment:corr_factor [0.1] float min: 0, max: 10 [] ...
chemical:sediment:porosity [0.6] float min: 0, max: 1 [] ...
chemical:sediment:layer_thickness [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth [1] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_critvel [0.15] float min: 0, max: 1 [m/s] ...
chemical:sediment:burial_rate [3e-05] float min: 0, max: 10 [m/year] ...
chemical:sediment:buried_leaking_rate [0] float min: 0, max: 10 [s-1] ...
chemical:compound [Phenanthrene] enum ['Naphthalene', 'Phenanthrene', 'Fluoranthene', 'Benzo-a-anthracene', 'Benzo-a-pyrene', 'Dibenzo-ah-anthracene', 'C1-Naphthalene', 'Acenaphthene', 'Acenaphthylene', 'Fluorene', 'Dibenzothiophene', 'C2-Naphthalene', 'Anthracene', 'C3-Naphthalene', 'C1-Dibenzothiophene', 'Pyrene', 'C1-Phenanthrene', 'C2-Dibenzothiophene', 'C2-Phenanthrene', 'Benzo-b-fluoranthene', 'Chrysene', 'C3-Dibenzothiophene', 'C3-Phenanthrene', 'Benzo-k-fluoranthene', 'Benzo-ghi-perylene', 'Indeno-123cd-pyrene', 'Copper', 'Cadmium', 'Chromium', 'Lead', 'Vanadium', 'Zinc', 'Nickel', None] ...
Seeding 500 lagrangian elements each representign 2mg og target chemical
td=datetime.today()
time = td - timedelta(days=10)
latseed= 57.6; lonseed= 10.6 # Skagen
ntraj=500
iniz=np.random.rand(ntraj) * -10. # seeding the chemicals in the upper 10m
o.seed_elements(lonseed, latseed, z=iniz, radius=2000,number=ntraj,time=time, mass=2e3)
09:58:03 DEBUG opendrift.models.chemicaldrift:894: Partitioning coefficients (Tref,freshwater)
09:58:03 DEBUG opendrift.models.chemicaldrift:895: KOC_sed: 12953.922406542462 L/KgOC
09:58:03 DEBUG opendrift.models.chemicaldrift:896: KOC_SPM: 12953.922406542462 L/KgOC
09:58:03 DEBUG opendrift.models.chemicaldrift:897: KOC_DOM: 3004.29439651874 L/KgOC
09:58:03 DEBUG opendrift.models.chemicaldrift:909: Kd_sed: 647.6961203271231 L/Kg
09:58:03 DEBUG opendrift.models.chemicaldrift:910: Kd_SPM: 647.6961203271231 L/Kg
09:58:03 DEBUG opendrift.models.chemicaldrift:911: Kd_DOM: 1580.2588525688573 L/Kg
09:58:03 DEBUG opendrift.models.chemicaldrift:1128: nspecies: 5
09:58:03 DEBUG opendrift.models.chemicaldrift:1129: Transfer rates:
[[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
0.00000000e+00]
[4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]
[9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]
[9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
3.16887646e-11]
[0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]]
09:58:03 DEBUG opendrift.models.chemicaldrift:533: Initial partitioning:
09:58:03 DEBUG opendrift.models.chemicaldrift:535: 449 0 LMM
09:58:03 DEBUG opendrift.models.chemicaldrift:535: 0 1 Humic colloid
09:58:03 DEBUG opendrift.models.chemicaldrift:535: 51 2 Particle reversible
09:58:03 DEBUG opendrift.models.chemicaldrift:535: 0 3 Sediment reversible
09:58:03 DEBUG opendrift.models.chemicaldrift:535: 0 4 Sediment slowly reversible
09:58:03 INFO opendrift.models.basemodel.environment:206: Adding a global landmask from GSHHG
09:58:03 DEBUG opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
09:58:07 DEBUG opendrift.models.basemodel.environment:312: Added reader global_landmask
09:58:07 INFO opendrift.models.basemodel.environment:229: Fallback values will be used for the following variables which have no readers:
09:58:07 INFO opendrift.models.basemodel.environment:232: ocean_vertical_diffusivity: 0.000100
09:58:07 INFO opendrift.models.basemodel.environment:232: spm: 1.000000
09:58:07 INFO opendrift.models.basemodel.environment:232: active_sediment_layer_thickness: 0.030000
09:58:07 INFO opendrift.models.basemodel.environment:232: doc: 0.000000
09:58:07 INFO opendrift.models.basemodel.environment:232: sea_water_ph_reported_on_total_scale: 8.100000
09:58:07 INFO opendrift.models.basemodel.environment:232: pH_sediment: 6.900000
09:58:07 DEBUG opendrift:100: Changed mode from Mode.Config to Mode.Ready
Running model
o.run(steps=48*2, time_step=1800, time_step_output=1800)
09:58:07 DEBUG opendrift:100: Changed mode from Mode.Ready to Mode.Run
09:58:07 DEBUG opendrift:1788:
------------------------------------------------------
Software and hardware:
OpenDrift version 1.14.2
Platform: Linux, 6.8.0-1029-aws
4.0 GB memory
36 processors (x86_64)
NumPy version 2.3.0
SciPy version 1.15.2
Matplotlib version 3.10.3
NetCDF4 version 1.7.2
Xarray version 2025.6.1
ADIOS (adios_db) version 1.2.5
Copernicusmarine version 2.1.2
Python version 3.13.5 | packaged by conda-forge | (main, Jun 16 2025, 08:27:50) [GCC 13.3.0]
------------------------------------------------------
09:58:07 DEBUG opendrift:1802: No output file is specified, neglecting export_buffer_length
09:58:07 DEBUG opendrift:1920: Finalizing environment and preparing readers for simulation coverage ([np.float64(4.69639997080836), np.float64(54.43270917325407), np.float64(16.516793922624256), np.float64(60.761642023034995)]) and time (2025-06-16 09:58:03.273845 to 2025-06-18 09:58:03.273845)
09:58:07 DEBUG opendrift.models.basemodel.environment:168: Preparing https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be for extent [np.float64(4.69639997080836), np.float64(54.43270917325407), np.float64(16.516793922624256), np.float64(60.761642023034995)]
09:58:07 DEBUG opendrift.readers.basereader.structured:153: Clearing cache for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be before starting new simulation
09:58:07 DEBUG opendrift.readers.basereader.variables:612: Setting buffer size 11 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 2 m/s and time span of 1:00:00
09:58:07 DEBUG opendrift.readers.basereader.variables:553: Nothing more to prepare for https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:07 DEBUG opendrift.models.basemodel.environment:168: Preparing constant_reader for extent [np.float64(4.69639997080836), np.float64(54.43270917325407), np.float64(16.516793922624256), np.float64(60.761642023034995)]
09:58:07 DEBUG opendrift.readers.basereader.variables:553: Nothing more to prepare for constant_reader
09:58:07 DEBUG opendrift.models.basemodel.environment:168: Preparing global_landmask for extent [np.float64(4.69639997080836), np.float64(54.43270917325407), np.float64(16.516793922624256), np.float64(60.761642023034995)]
09:58:07 DEBUG opendrift.readers.basereader.variables:553: Nothing more to prepare for global_landmask
09:58:07 DEBUG opendrift:2007: Initial self.result, size Frozen({'trajectory': 500, 'time': 97})
09:58:07 INFO opendrift:885: Using existing reader for land_binary_mask
09:58:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:07 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:07 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:07 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:07 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:07 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:07 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:07 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:07 INFO opendrift:914: All points are in ocean
09:58:07 INFO opendrift:2035: Storing previous position of elements for coastline interaction
09:58:07 INFO opendrift.models.chemicaldrift:355: Number of species: 5
09:58:07 INFO opendrift.models.chemicaldrift:357: 0 LMM
09:58:07 INFO opendrift.models.chemicaldrift:357: 1 Humic colloid
09:58:07 INFO opendrift.models.chemicaldrift:357: 2 Particle reversible
09:58:07 INFO opendrift.models.chemicaldrift:357: 3 Sediment reversible
09:58:07 INFO opendrift.models.chemicaldrift:357: 4 Sediment slowly reversible
09:58:07 INFO opendrift.models.chemicaldrift:360: transfer setup: organics
09:58:07 INFO opendrift.models.chemicaldrift:362: nspecies: 5
09:58:07 INFO opendrift.models.chemicaldrift:363: Transfer rates:
[[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
0.00000000e+00]
[4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]
[9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]
[9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
3.16887646e-11]
[0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]]
09:58:07 DEBUG opendrift:842: to be seeded: 500, already seeded 0
09:58:07 DEBUG opendrift:864: Released 500 new elements.
09:58:07 DEBUG opendrift:2095: ======================================================================
09:58:07 INFO opendrift:2096: 2025-06-16 09:58:03.273845 - step 1 of 96 - 500 active elements (0 deactivated)
09:58:07 DEBUG opendrift:2102: 0 elements scheduled.
09:58:07 DEBUG opendrift:2104: ======================================================================
09:58:07 DEBUG opendrift:2115: 57.54622268676758 <- latitude -> 57.648128509521484
09:58:07 DEBUG opendrift:2115: 10.507113456726074 <- longitude -> 10.706080436706543
09:58:07 DEBUG opendrift:2115: -9.988470077514648 <- z -> -0.04695476219058037
09:58:07 DEBUG opendrift:2116: ---------------------------------
09:58:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:07 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 09:00:00 (before)
2025-06-16 10:00:00 (after)
09:58:09 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:09 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:09 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:09 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:09 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:09 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:09 DEBUG opendrift.readers.basereader.structured:292: Fetched env-block (size 37x35x7) for time before (2025-06-16 09:00:00)
09:58:10 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:10 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:10 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:10 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:10 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:10 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:10 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 37x35x7) for time after (2025-06-16 10:00:00)
09:58:10 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 09:00:00) in space (linearNDFast)
09:58:10 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:10 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 10:00:00) in space (linearNDFast)
09:58:10 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:10 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 09:00:00, weight 0.03) and
after (2025-06-16 10:00:00, weight 0.97) in time
09:58:10 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:10 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4929004930107 and -59.29392585004879 degrees.
09:58:10 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4929004930107 and -59.29392585004879 degrees.
09:58:10 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:10 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:10 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:10 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:10 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:10 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:10 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:10 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:10 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:10 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:10 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:10 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:10 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:10 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:10 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:10 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:10 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:10 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:10 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:10 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:10 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:10 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:10 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:10 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:10 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:10 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:10 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:10 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:10 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:10 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0762022 (min) 0.163588 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.189716 (min) 0.183002 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.125486 (min) -0.0949973 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.2242 (min) 11.5467 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.180769 (min) 0.913939 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.53077 (min) 23.882 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6309 (min) 14.2219 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.1267 (min) 32.0122 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000106262 (min) 0.000156835 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:10 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:10 DEBUG opendrift:671: No elements hit coastline.
09:58:10 DEBUG opendrift:702: No elements hit seafloor.
09:58:10 DEBUG opendrift:1720: No elements to deactivate
09:58:10 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:10 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:10 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:10 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:58:10 DEBUG opendrift.models.chemicaldrift:1476: old species: [2]
09:58:10 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
09:58:10 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[0. 0. 0. 0. 0.]
[0. 0. 0. 0. 0.]
[1. 0. 0. 0. 0.]
[0. 0. 0. 0. 0.]
[0. 0. 0. 0. 0.]]
09:58:10 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:10 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:10 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:10 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:10 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.09679823194688456
09:58:10 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:10 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:10 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:10 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 39 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 44 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 50 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 39 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 50 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 51 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 44 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:10 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:10 DEBUG opendrift.models.oceandrift:524: 42 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 47 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 50 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 55 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 43 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 55 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 60 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 47 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:10 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:10 DEBUG opendrift.models.oceandrift:524: 41 elements penetrated seafloor, lifting up
09:58:10 DEBUG opendrift.models.oceandrift:524: 36 elements penetrated seafloor, lifting up
09:58:10 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:10 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:10 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:10 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:10 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(450), np.int64(0), np.int64(48), np.int64(2), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:10 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:10 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:10 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:10 DEBUG opendrift:2095: ======================================================================
09:58:10 INFO opendrift:2096: 2025-06-16 10:28:03.273845 - step 2 of 96 - 500 active elements (0 deactivated)
09:58:10 DEBUG opendrift:2102: 0 elements scheduled.
09:58:10 DEBUG opendrift:2104: ======================================================================
09:58:10 DEBUG opendrift:2115: 57.543464568942866 <- latitude -> 57.64857231025215
09:58:10 DEBUG opendrift:2115: 10.508700575808682 <- longitude -> 10.704664210256793
09:58:10 DEBUG opendrift:2115: -21.218189239501953 <- z -> -0.14233741534902844
09:58:10 DEBUG opendrift:2116: ---------------------------------
09:58:10 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:10 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:10 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:10 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:10 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:10 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:10 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:10 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 10:00:00 (before)
2025-06-16 11:00:00 (after)
09:58:11 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:11 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:11 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:11 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:11 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:11 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:11 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 38x35x7) for time after (2025-06-16 11:00:00)
09:58:11 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 10:00:00) in space (linearNDFast)
09:58:11 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:11 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 11:00:00) in space (linearNDFast)
09:58:11 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:11 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 10:00:00, weight 0.53) and
after (2025-06-16 11:00:00, weight 0.47) in time
09:58:11 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:11 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.491310514887594 and -59.295346843886456 degrees.
09:58:11 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.491310514887594 and -59.295346843886456 degrees.
09:58:11 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:11 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:11 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:11 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:11 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:11 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:11 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:11 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:11 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:11 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:11 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:11 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:11 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:11 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:11 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:11 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:11 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:11 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:11 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:11 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:11 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:11 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:11 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:11 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:11 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:11 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:11 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:11 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:11 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:11 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0978027 (min) 0.167597 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.149871 (min) 0.209378 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.162656 (min) -0.130895 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.1692 (min) 11.529 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.174857 (min) 0.850039 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.64641 (min) 23.9482 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.405 (min) 14.2109 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.575 (min) 32.4776 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00013662 (min) 0.000143365 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:11 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:11 DEBUG opendrift:671: No elements hit coastline.
09:58:11 DEBUG opendrift:707: Lifting 5 elements to seafloor.
09:58:11 DEBUG opendrift:1720: No elements to deactivate
09:58:11 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:11 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:11 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:11 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 25
09:58:11 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0]
09:58:11 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 0 3 3 3 3]
09:58:11 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 24. 0.]
[ 0. 0. 0. 0. 0.]
[ 2. 0. 0. 2. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:11 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:11 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:11 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:11 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:11 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.09633427332192618
09:58:11 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:11 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:11 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:11 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:11 DEBUG opendrift.models.oceandrift:544: 24 elements reached seafloor, interacting with bottom
09:58:11 DEBUG opendrift:707: Lifting 24 elements to seafloor.
09:58:11 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:11 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:11 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:11 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:11 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:11 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:11 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:11 DEBUG opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
09:58:11 DEBUG opendrift:707: Lifting 2 elements to seafloor.
09:58:11 DEBUG opendrift.models.oceandrift:524: 40 elements penetrated seafloor, lifting up
09:58:11 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:11 DEBUG opendrift.models.oceandrift:524: 41 elements penetrated seafloor, lifting up
09:58:11 DEBUG opendrift.models.oceandrift:524: 41 elements penetrated seafloor, lifting up
09:58:11 DEBUG opendrift.models.oceandrift:524: 43 elements penetrated seafloor, lifting up
09:58:11 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:11 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:11 DEBUG opendrift.models.oceandrift:524: 39 elements penetrated seafloor, lifting up
09:58:11 DEBUG opendrift.models.oceandrift:524: 41 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 45 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 42 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 52 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 51 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 45 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 41 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 47 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:12 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:12 DEBUG opendrift.models.oceandrift:524: 40 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 42 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 45 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 43 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 42 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 36 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:12 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:12 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:12 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:12 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:12 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(427), np.int64(0), np.int64(43), np.int64(30), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:12 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:12 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:12 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:12 DEBUG opendrift:2095: ======================================================================
09:58:12 INFO opendrift:2096: 2025-06-16 10:58:03.273845 - step 3 of 96 - 500 active elements (0 deactivated)
09:58:12 DEBUG opendrift:2102: 0 elements scheduled.
09:58:12 DEBUG opendrift:2104: ======================================================================
09:58:12 DEBUG opendrift:2115: 57.5442519511431 <- latitude -> 57.649898745547965
09:58:12 DEBUG opendrift:2115: 10.51052109080502 <- longitude -> 10.70318920465952
09:58:12 DEBUG opendrift:2115: -21.182275772094727 <- z -> -0.058789374482906886
09:58:12 DEBUG opendrift:2116: ---------------------------------
09:58:12 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:12 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:12 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:12 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:12 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:12 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:12 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:12 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 10:00:00 (before)
2025-06-16 11:00:00 (after)
09:58:12 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 10:00:00) in space (linearNDFast)
09:58:12 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:12 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 11:00:00) in space (linearNDFast)
09:58:12 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:12 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 10:00:00, weight 0.03) and
after (2025-06-16 11:00:00, weight 0.97) in time
09:58:12 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:12 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48949000381624 and -59.29682186224132 degrees.
09:58:12 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48949000381624 and -59.29682186224132 degrees.
09:58:12 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:12 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:12 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:12 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:12 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:12 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:12 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:12 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:12 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:12 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:12 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:12 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:12 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:12 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:12 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:12 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:12 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:12 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:12 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:12 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:12 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:12 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:12 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:12 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:12 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:12 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:12 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:12 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:12 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:12 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.108268 (min) 0.157264 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.121564 (min) 0.229866 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.201652 (min) -0.167647 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.0807 (min) 11.6133 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.245808 (min) 0.755351 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.7689 (min) 23.8673 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.3837 (min) 14.2266 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.0307 (min) 32.4662 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000149778 (min) 0.000135536 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:12 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:12 DEBUG opendrift:671: No elements hit coastline.
09:58:12 DEBUG opendrift:707: Lifting 36 elements to seafloor.
09:58:12 DEBUG opendrift:1720: No elements to deactivate
09:58:12 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:12 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:12 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:12 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 28
09:58:12 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
09:58:12 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
09:58:12 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 52. 0.]
[ 0. 0. 0. 0. 0.]
[ 2. 0. 0. 6. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:12 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:12 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:12 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:12 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:12 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.09765264506814396
09:58:12 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:12 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:12 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:12 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:544: 28 elements reached seafloor, interacting with bottom
09:58:12 DEBUG opendrift:707: Lifting 28 elements to seafloor.
09:58:12 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 38 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 43 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 38 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 38 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 42 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 51 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 53 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 36 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 36 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 42 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 47 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 42 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:12 DEBUG opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
09:58:12 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:12 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:12 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:12 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:12 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(399), np.int64(0), np.int64(43), np.int64(58), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:12 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:12 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:12 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:12 DEBUG opendrift:2095: ======================================================================
09:58:12 INFO opendrift:2096: 2025-06-16 11:28:03.273845 - step 4 of 96 - 500 active elements (0 deactivated)
09:58:12 DEBUG opendrift:2102: 0 elements scheduled.
09:58:12 DEBUG opendrift:2104: ======================================================================
09:58:12 DEBUG opendrift:2115: 57.54411876770317 <- latitude -> 57.65213246338624
09:58:12 DEBUG opendrift:2115: 10.512041679075601 <- longitude -> 10.700156343283789
09:58:12 DEBUG opendrift:2115: -22.12131127366281 <- z -> -0.005124529140476786
09:58:12 DEBUG opendrift:2116: ---------------------------------
09:58:12 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:12 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:12 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:12 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:12 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:12 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:12 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:12 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 11:00:00 (before)
2025-06-16 12:00:00 (after)
09:58:13 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:13 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:13 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:13 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:13 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:13 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:13 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 37x35x7) for time after (2025-06-16 12:00:00)
09:58:13 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 11:00:00) in space (linearNDFast)
09:58:13 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:13 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 12:00:00) in space (linearNDFast)
09:58:13 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:13 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 11:00:00, weight 0.53) and
after (2025-06-16 12:00:00, weight 0.47) in time
09:58:13 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:13 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4879694076815 and -59.29985472446538 degrees.
09:58:13 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4879694076815 and -59.29985472446538 degrees.
09:58:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:13 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:13 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:13 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:13 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:13 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:13 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:13 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:13 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:13 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:13 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:13 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:13 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.115991 (min) 0.191751 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0785476 (min) 0.226233 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.241251 (min) -0.204485 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.92315 (min) 11.6037 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.307885 (min) 0.746588 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.85985 (min) 23.7527 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4031 (min) 14.2311 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.4051 (min) 32.4714 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000154305 (min) 0.000112932 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:13 DEBUG opendrift:671: No elements hit coastline.
09:58:13 DEBUG opendrift:707: Lifting 62 elements to seafloor.
09:58:13 DEBUG opendrift:1720: No elements to deactivate
09:58:13 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:13 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:13 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:13 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 21
09:58:13 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 3 0 0]
09:58:13 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 0 3 3 3 3 3 3 3 0 3 3]
09:58:13 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 71. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 6. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:13 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:13 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:13 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:13 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:13 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.09745945136361048
09:58:13 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:13 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:13 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:13 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:544: 19 elements reached seafloor, interacting with bottom
09:58:13 DEBUG opendrift:707: Lifting 19 elements to seafloor.
09:58:13 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 38 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 40 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 39 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 43 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 38 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 38 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 40 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 39 elements penetrated seafloor, lifting up
09:58:13 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:13 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:13 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:13 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:13 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(382), np.int64(0), np.int64(42), np.int64(76), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:13 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:13 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:13 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:13 DEBUG opendrift:2095: ======================================================================
09:58:13 INFO opendrift:2096: 2025-06-16 11:58:03.273845 - step 5 of 96 - 500 active elements (0 deactivated)
09:58:13 DEBUG opendrift:2102: 0 elements scheduled.
09:58:13 DEBUG opendrift:2104: ======================================================================
09:58:13 DEBUG opendrift:2115: 57.542878185671356 <- latitude -> 57.65256137705328
09:58:13 DEBUG opendrift:2115: 10.513500163673308 <- longitude -> 10.697255765986196
09:58:13 DEBUG opendrift:2115: -22.283594131469727 <- z -> 0.0
09:58:13 DEBUG opendrift:2116: ---------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:13 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:13 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 11:00:00 (before)
2025-06-16 12:00:00 (after)
09:58:13 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 11:00:00) in space (linearNDFast)
09:58:13 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:13 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 12:00:00) in space (linearNDFast)
09:58:13 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:13 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 11:00:00, weight 0.03) and
after (2025-06-16 12:00:00, weight 0.97) in time
09:58:13 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:13 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.486510924918676 and -59.302755294088335 degrees.
09:58:13 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.486510924918676 and -59.302755294088335 degrees.
09:58:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:13 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:13 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:13 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:13 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:13 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:13 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:13 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:13 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:13 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:13 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:13 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:13 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.133502 (min) 0.203562 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0441534 (min) 0.261114 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.280795 (min) -0.241369 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.71921 (min) 11.691 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.400346 (min) 0.73709 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.93486 (min) 23.6178 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4206 (min) 14.294 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.2277 (min) 32.462 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000182286 (min) 8.99505e-05 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:13 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:13 DEBUG opendrift:671: No elements hit coastline.
09:58:13 DEBUG opendrift:707: Lifting 82 elements to seafloor.
09:58:13 DEBUG opendrift:1720: No elements to deactivate
09:58:13 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:13 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:13 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:13 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 27
09:58:13 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
09:58:13 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 0 0 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
09:58:13 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 96. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 6. 0.]
[ 3. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:13 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:13 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:13 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:13 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:13 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.09909031803989435
09:58:13 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:13 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:13 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:13 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:544: 25 elements reached seafloor, interacting with bottom
09:58:13 DEBUG opendrift:707: Lifting 25 elements to seafloor.
09:58:13 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:13 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:13 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 40 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 36 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 36 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 38 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 38 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 42 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 42 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 40 elements penetrated seafloor, lifting up
09:58:13 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:13 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:13 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:13 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:13 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:13 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(359), np.int64(0), np.int64(41), np.int64(100), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:13 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:13 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:13 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:13 DEBUG opendrift:2095: ======================================================================
09:58:13 INFO opendrift:2096: 2025-06-16 12:28:03.273845 - step 6 of 96 - 500 active elements (0 deactivated)
09:58:13 DEBUG opendrift:2102: 0 elements scheduled.
09:58:13 DEBUG opendrift:2104: ======================================================================
09:58:13 DEBUG opendrift:2115: 57.54216452389711 <- latitude -> 57.65548512112835
09:58:13 DEBUG opendrift:2115: 10.514826242951946 <- longitude -> 10.696468605242826
09:58:13 DEBUG opendrift:2115: -22.247095108032227 <- z -> -0.034846125157112384
09:58:13 DEBUG opendrift:2116: ---------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:13 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:13 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 12:00:00 (before)
2025-06-16 13:00:00 (after)
09:58:14 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:14 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:14 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:14 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:14 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:14 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:14 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 38x34x7) for time after (2025-06-16 13:00:00)
09:58:14 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 12:00:00) in space (linearNDFast)
09:58:14 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:14 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 13:00:00) in space (linearNDFast)
09:58:14 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:14 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 12:00:00, weight 0.53) and
after (2025-06-16 13:00:00, weight 0.47) in time
09:58:14 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:14 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184861851536 and -59.30354245305812 degrees.
09:58:14 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184861851536 and -59.30354245305812 degrees.
09:58:14 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:14 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:14 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:14 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:14 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:14 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:14 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:14 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:14 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:14 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:14 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:14 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:14 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:14 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:14 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:14 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:14 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:14 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:14 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:14 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:14 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:14 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:14 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.143066 (min) 0.178259 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.00189604 (min) 0.263029 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.300696 (min) -0.261648 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.89028 (min) 11.8811 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.2753 (min) 0.85737 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.99127 (min) 23.5675 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4387 (min) 14.2653 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.2627 (min) 32.4362 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000177425 (min) 6.6899e-05 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:14 DEBUG opendrift:671: No elements hit coastline.
09:58:14 DEBUG opendrift:707: Lifting 103 elements to seafloor.
09:58:14 DEBUG opendrift:1720: No elements to deactivate
09:58:14 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:14 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:14 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:14 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 15
09:58:14 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
09:58:14 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
09:58:14 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 111. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 7. 0.]
[ 3. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:14 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:14 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:14 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:14 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:14 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.10228319334609645
09:58:14 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:14 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:14 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:14 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:544: 15 elements reached seafloor, interacting with bottom
09:58:14 DEBUG opendrift:707: Lifting 15 elements to seafloor.
09:58:14 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 44 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 36 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 39 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:14 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:14 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 39 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 40 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 38 elements penetrated seafloor, lifting up
09:58:14 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:14 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:14 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:14 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:14 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(344), np.int64(0), np.int64(40), np.int64(116), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:14 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:14 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:14 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:14 DEBUG opendrift:2095: ======================================================================
09:58:14 INFO opendrift:2096: 2025-06-16 12:58:03.273845 - step 7 of 96 - 500 active elements (0 deactivated)
09:58:14 DEBUG opendrift:2102: 0 elements scheduled.
09:58:14 DEBUG opendrift:2104: ======================================================================
09:58:14 DEBUG opendrift:2115: 57.54324403023446 <- latitude -> 57.658496956613824
09:58:14 DEBUG opendrift:2115: 10.514826242951946 <- longitude -> 10.695059026986495
09:58:14 DEBUG opendrift:2115: -22.610186730090856 <- z -> -0.2082422495647005
09:58:14 DEBUG opendrift:2116: ---------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:14 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:14 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:14 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:14 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 12:00:00 (before)
2025-06-16 13:00:00 (after)
09:58:14 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 12:00:00) in space (linearNDFast)
09:58:14 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:14 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 13:00:00) in space (linearNDFast)
09:58:14 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:14 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 12:00:00, weight 0.03) and
after (2025-06-16 13:00:00, weight 0.97) in time
09:58:14 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:14 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184861851536 and -59.30495202734958 degrees.
09:58:14 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184861851536 and -59.30495202734958 degrees.
09:58:14 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:14 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:14 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:14 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:14 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:14 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:14 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:14 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:14 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:14 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:14 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:14 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:14 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:14 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:14 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:14 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:14 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:14 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:14 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:14 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:14 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:14 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:14 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.154311 (min) 0.231988 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.00461856 (min) 0.274586 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.320289 (min) -0.280899 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.0736 (min) 12.0723 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.15936 (min) 0.990538 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.0278 (min) 23.4802 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4572 (min) 14.2876 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.0818 (min) 32.4101 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000182441 (min) 8.42486e-05 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:14 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:14 DEBUG opendrift:671: No elements hit coastline.
09:58:14 DEBUG opendrift:707: Lifting 123 elements to seafloor.
09:58:14 DEBUG opendrift:1720: No elements to deactivate
09:58:14 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:14 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:14 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:14 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 23
09:58:14 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
09:58:14 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
09:58:14 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 134. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 8. 0.]
[ 3. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:14 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:14 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:14 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:14 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:14 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.10566842916882228
09:58:14 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:14 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:14 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:14 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:544: 23 elements reached seafloor, interacting with bottom
09:58:14 DEBUG opendrift:707: Lifting 23 elements to seafloor.
09:58:14 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 39 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:14 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:14 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:14 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:14 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:14 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:14 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:14 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:14 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:14 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:14 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(321), np.int64(0), np.int64(38), np.int64(141), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:14 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:14 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:14 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:14 DEBUG opendrift:2095: ======================================================================
09:58:14 INFO opendrift:2096: 2025-06-16 13:28:03.273845 - step 8 of 96 - 500 active elements (0 deactivated)
09:58:14 DEBUG opendrift:2102: 0 elements scheduled.
09:58:14 DEBUG opendrift:2104: ======================================================================
09:58:14 DEBUG opendrift:2115: 57.544289213338985 <- latitude -> 57.66201941139249
09:58:14 DEBUG opendrift:2115: 10.514826242951942 <- longitude -> 10.692433981145978
09:58:14 DEBUG opendrift:2115: -22.57403564453125 <- z -> -0.1861733327942079
09:58:14 DEBUG opendrift:2116: ---------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:14 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:14 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:14 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:14 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:14 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 13:00:00 (before)
2025-06-16 14:00:00 (after)
09:58:16 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:16 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:16 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:16 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:16 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:16 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:16 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 39x35x7) for time after (2025-06-16 14:00:00)
09:58:16 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 13:00:00) in space (linearNDFast)
09:58:16 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:16 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 14:00:00) in space (linearNDFast)
09:58:16 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:16 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 13:00:00, weight 0.53) and
after (2025-06-16 14:00:00, weight 0.47) in time
09:58:16 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:16 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184861851536 and -59.30757708861015 degrees.
09:58:16 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184861851536 and -59.30757708861015 degrees.
09:58:16 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:16 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:16 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:16 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:16 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:16 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:16 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:16 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:16 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:16 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:16 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:16 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:16 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:16 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:16 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:16 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:16 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:16 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:16 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:16 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:16 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.144544 (min) 0.226418 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0238285 (min) 0.281949 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.317661 (min) -0.276609 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.5842 (min) 12.521 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.246144 (min) 0.97773 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.0703 (min) 23.3126 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4717 (min) 14.3122 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.3682 (min) 32.3852 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000166722 (min) 7.38449e-05 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:16 DEBUG opendrift:671: No elements hit coastline.
09:58:16 DEBUG opendrift:707: Lifting 3 elements to seafloor.
09:58:16 DEBUG opendrift:1720: No elements to deactivate
09:58:16 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:16 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:16 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:16 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 15
09:58:16 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 3 0 0 0 0 0 0 0 0 0 0 0 0]
09:58:16 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 0 3 3 3 3 3 3 3 3 3 3 3 3]
09:58:16 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 148. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 10. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:16 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:16 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:16 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:16 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:16 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.11382463369280595
09:58:16 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:16 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:16 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:16 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:544: 14 elements reached seafloor, interacting with bottom
09:58:16 DEBUG opendrift:707: Lifting 14 elements to seafloor.
09:58:16 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:16 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:16 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 40 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 38 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 36 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 39 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:16 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:16 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:16 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:16 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:16 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(308), np.int64(0), np.int64(37), np.int64(155), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:16 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:16 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:16 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:16 DEBUG opendrift:2095: ======================================================================
09:58:16 INFO opendrift:2096: 2025-06-16 13:58:03.273845 - step 9 of 96 - 500 active elements (0 deactivated)
09:58:16 DEBUG opendrift:2102: 0 elements scheduled.
09:58:16 DEBUG opendrift:2104: ======================================================================
09:58:16 DEBUG opendrift:2115: 57.54522337850822 <- latitude -> 57.66657630236553
09:58:16 DEBUG opendrift:2115: 10.514826242951942 <- longitude -> 10.68997412521244
09:58:16 DEBUG opendrift:2115: -22.57403564453125 <- z -> -0.18670205167797427
09:58:16 DEBUG opendrift:2116: ---------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:16 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:16 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:16 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:16 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 13:00:00 (before)
2025-06-16 14:00:00 (after)
09:58:16 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 13:00:00) in space (linearNDFast)
09:58:16 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:16 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 14:00:00) in space (linearNDFast)
09:58:16 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:16 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 13:00:00, weight 0.03) and
after (2025-06-16 14:00:00, weight 0.97) in time
09:58:16 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:16 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184849485336 and -59.310036944758096 degrees.
09:58:16 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184849485336 and -59.310036944758096 degrees.
09:58:16 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:16 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:16 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:16 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:16 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:16 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:16 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:16 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:16 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:16 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:16 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:16 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:16 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:16 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:16 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:16 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:16 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:16 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:16 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:16 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:16 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.148995 (min) 0.20239 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0388147 (min) 0.278306 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.313797 (min) -0.270724 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: x_wind: 11.0734 (min) 12.966 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.37136 (min) 1.07764 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.131 (min) 23.1353 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4834 (min) 14.3069 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.3878 (min) 32.3802 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000152153 (min) 8.82924e-05 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:16 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:16 DEBUG opendrift:671: No elements hit coastline.
09:58:16 DEBUG opendrift:707: Lifting 3 elements to seafloor.
09:58:16 DEBUG opendrift:1720: No elements to deactivate
09:58:16 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:16 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:16 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:16 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 20
09:58:16 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0]
09:58:16 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 0 3 3 3 3 3 3 3 3 3 3 3 3 3]
09:58:16 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 167. 0.]
[ 0. 0. 0. 0. 0.]
[ 4. 0. 0. 11. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:16 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:16 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:16 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:16 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:16 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.12217931348599512
09:58:16 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:16 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:16 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:16 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:544: 19 elements reached seafloor, interacting with bottom
09:58:16 DEBUG opendrift:707: Lifting 19 elements to seafloor.
09:58:16 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 40 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:16 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:16 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 38 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 43 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:16 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:16 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:16 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:16 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:16 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:16 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:16 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(290), np.int64(0), np.int64(34), np.int64(176), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:16 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:16 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:16 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:16 DEBUG opendrift:2095: ======================================================================
09:58:16 INFO opendrift:2096: 2025-06-16 14:28:03.273845 - step 10 of 96 - 500 active elements (0 deactivated)
09:58:16 DEBUG opendrift:2102: 0 elements scheduled.
09:58:16 DEBUG opendrift:2104: ======================================================================
09:58:16 DEBUG opendrift:2115: 57.545777775582316 <- latitude -> 57.670295901295496
09:58:16 DEBUG opendrift:2115: 10.514826242951946 <- longitude -> 10.688375513876586
09:58:16 DEBUG opendrift:2115: -22.57403564453125 <- z -> -0.09667068085092612
09:58:16 DEBUG opendrift:2116: ---------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:16 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:16 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:16 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:16 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:16 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 14:00:00 (before)
2025-06-16 15:00:00 (after)
09:58:17 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:17 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:17 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:17 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:17 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:17 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:17 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 39x34x7) for time after (2025-06-16 15:00:00)
09:58:17 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 14:00:00) in space (linearNDFast)
09:58:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:17 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 15:00:00) in space (linearNDFast)
09:58:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:17 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 14:00:00, weight 0.53) and
after (2025-06-16 15:00:00, weight 0.47) in time
09:58:17 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184849485336 and -59.311635535108095 degrees.
09:58:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184849485336 and -59.311635535108095 degrees.
09:58:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:17 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:17 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:17 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:17 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:17 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:17 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:17 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:17 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.143361 (min) 0.249369 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0503627 (min) 0.254427 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.280449 (min) -0.237393 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: x_wind: 11.1102 (min) 13.0137 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.427315 (min) 1.02751 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.1783 (min) 23.0601 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4889 (min) 14.3847 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.0056 (min) 32.3868 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000121341 (min) 0.000104211 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:17 DEBUG opendrift:671: No elements hit coastline.
09:58:17 DEBUG opendrift:707: Lifting 3 elements to seafloor.
09:58:17 DEBUG opendrift:1720: No elements to deactivate
09:58:17 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:17 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:17 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:17 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 18
09:58:17 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
09:58:17 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
09:58:17 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 185. 0.]
[ 0. 0. 0. 0. 0.]
[ 4. 0. 0. 13. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:17 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:17 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:17 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:17 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:17 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.12314728024770287
09:58:17 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:17 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:17 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:17 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:544: 18 elements reached seafloor, interacting with bottom
09:58:17 DEBUG opendrift:707: Lifting 18 elements to seafloor.
09:58:17 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 40 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:17 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:17 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 41 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:17 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:17 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 45 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 36 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:17 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:17 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:17 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:17 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:17 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:17 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:17 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(272), np.int64(0), np.int64(31), np.int64(197), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:17 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:17 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:17 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:17 DEBUG opendrift:2095: ======================================================================
09:58:17 INFO opendrift:2096: 2025-06-16 14:58:03.273845 - step 11 of 96 - 500 active elements (0 deactivated)
09:58:17 DEBUG opendrift:2102: 0 elements scheduled.
09:58:17 DEBUG opendrift:2104: ======================================================================
09:58:17 DEBUG opendrift:2115: 57.545777775582316 <- latitude -> 57.670295901295496
09:58:17 DEBUG opendrift:2115: 10.514826242951942 <- longitude -> 10.685493679043478
09:58:17 DEBUG opendrift:2115: -22.57403564453125 <- z -> -0.04325794473935263
09:58:17 DEBUG opendrift:2116: ---------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:17 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:17 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 14:00:00 (before)
2025-06-16 15:00:00 (after)
09:58:17 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 14:00:00) in space (linearNDFast)
09:58:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:17 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 15:00:00) in space (linearNDFast)
09:58:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:17 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 14:00:00, weight 0.03) and
after (2025-06-16 15:00:00, weight 0.97) in time
09:58:17 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184849485336 and -59.314517388580796 degrees.
09:58:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184849485336 and -59.314517388580796 degrees.
09:58:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:17 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:17 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:17 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:17 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:17 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:17 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:17 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:17 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.167748 (min) 0.256444 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0616722 (min) 0.238787 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.244949 (min) -0.202358 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: x_wind: 11.1315 (min) 13.0402 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.493675 (min) 0.912869 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.2872 (min) 22.8566 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4939 (min) 14.4292 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.0068 (min) 32.3766 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -9.51032e-05 (min) 0.00012898 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:17 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:17 DEBUG opendrift:671: No elements hit coastline.
09:58:17 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:17 DEBUG opendrift:1720: No elements to deactivate
09:58:17 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:17 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:17 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:17 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 20
09:58:17 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0]
09:58:17 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 0 3 3 3 3 3 3 3 3 3 3]
09:58:17 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 204. 0.]
[ 0. 0. 0. 0. 0.]
[ 5. 0. 0. 16. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:17 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:17 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:17 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:17 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:17 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.12348627479302843
09:58:17 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:17 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:17 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:17 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:544: 19 elements reached seafloor, interacting with bottom
09:58:17 DEBUG opendrift:707: Lifting 19 elements to seafloor.
09:58:17 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:17 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:17 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 36 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:17 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:17 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:17 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:17 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:17 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:17 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(254), np.int64(0), np.int64(29), np.int64(217), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:17 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:17 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:17 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:17 DEBUG opendrift:2095: ======================================================================
09:58:17 INFO opendrift:2096: 2025-06-16 15:28:03.273845 - step 12 of 96 - 500 active elements (0 deactivated)
09:58:17 DEBUG opendrift:2102: 0 elements scheduled.
09:58:17 DEBUG opendrift:2104: ======================================================================
09:58:17 DEBUG opendrift:2115: 57.545777775582316 <- latitude -> 57.67150617151552
09:58:17 DEBUG opendrift:2115: 10.514826242951939 <- longitude -> 10.68537007839379
09:58:17 DEBUG opendrift:2115: -22.57403564453125 <- z -> -0.06535396404890426
09:58:17 DEBUG opendrift:2116: ---------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:17 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:17 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 15:00:00 (before)
2025-06-16 16:00:00 (after)
09:58:18 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:18 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:18 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:18 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:18 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:18 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:18 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 38x34x7) for time after (2025-06-16 16:00:00)
09:58:18 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 15:00:00) in space (linearNDFast)
09:58:18 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:18 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 16:00:00) in space (linearNDFast)
09:58:18 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:18 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 15:00:00, weight 0.53) and
after (2025-06-16 16:00:00, weight 0.47) in time
09:58:18 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:18 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184844185554 and -59.31464098572887 degrees.
09:58:18 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184844185554 and -59.31464098572887 degrees.
09:58:18 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:18 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:18 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:18 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:18 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:18 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:18 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:18 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:18 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:18 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:18 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:18 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:18 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:18 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:18 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:18 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:18 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:18 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:18 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:18 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:18 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.154583 (min) 0.209894 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0684175 (min) 0.21651 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.193587 (min) -0.152513 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: x_wind: 11.1001 (min) 12.9371 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.423136 (min) 0.813937 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3279 (min) 22.8566 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4851 (min) 14.4313 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.039 (min) 32.3644 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -6.76576e-05 (min) 0.000181319 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:18 DEBUG opendrift:671: No elements hit coastline.
09:58:18 DEBUG opendrift:707: Lifting 2 elements to seafloor.
09:58:18 DEBUG opendrift:1720: No elements to deactivate
09:58:18 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:18 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:18 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:18 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 13
09:58:18 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0]
09:58:18 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3]
09:58:18 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 217. 0.]
[ 0. 0. 0. 0. 0.]
[ 5. 0. 0. 17. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:18 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:18 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:18 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:18 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:18 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.12140056513348614
09:58:18 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:18 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:18 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:18 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:544: 13 elements reached seafloor, interacting with bottom
09:58:18 DEBUG opendrift:707: Lifting 13 elements to seafloor.
09:58:18 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 34 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:18 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:18 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:18 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:18 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:18 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(241), np.int64(0), np.int64(29), np.int64(230), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:18 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:18 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:18 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:18 DEBUG opendrift:2095: ======================================================================
09:58:18 INFO opendrift:2096: 2025-06-16 15:58:03.273845 - step 13 of 96 - 500 active elements (0 deactivated)
09:58:18 DEBUG opendrift:2102: 0 elements scheduled.
09:58:18 DEBUG opendrift:2104: ======================================================================
09:58:18 DEBUG opendrift:2115: 57.545777775582316 <- latitude -> 57.67442657796793
09:58:18 DEBUG opendrift:2115: 10.514826242951942 <- longitude -> 10.686351793142249
09:58:18 DEBUG opendrift:2115: -22.57403564453125 <- z -> -0.018285613360407904
09:58:18 DEBUG opendrift:2116: ---------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:18 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:18 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:18 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:18 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 15:00:00 (before)
2025-06-16 16:00:00 (after)
09:58:18 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 15:00:00) in space (linearNDFast)
09:58:18 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:18 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 16:00:00) in space (linearNDFast)
09:58:18 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:18 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 15:00:00, weight 0.03) and
after (2025-06-16 16:00:00, weight 0.97) in time
09:58:18 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:18 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184849485336 and -59.31365926828142 degrees.
09:58:18 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184849485336 and -59.31365926828142 degrees.
09:58:18 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:18 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:18 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:18 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:18 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:18 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:18 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:18 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:18 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:18 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:18 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:18 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:18 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:18 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:18 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:18 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:18 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:18 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:18 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:18 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:18 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.154588 (min) 0.260069 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0760654 (min) 0.192155 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.141125 (min) -0.10142 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: x_wind: 11.0492 (min) 12.8387 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.377812 (min) 0.741759 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3279 (min) 22.8566 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4753 (min) 14.4471 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.2176 (min) 32.3523 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -5.43284e-05 (min) 0.000233558 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:18 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:18 DEBUG opendrift:671: No elements hit coastline.
09:58:18 DEBUG opendrift:702: No elements hit seafloor.
09:58:18 DEBUG opendrift:1720: No elements to deactivate
09:58:18 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:18 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:18 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:18 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 12
09:58:18 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 2 0 0 0 0 0 0]
09:58:18 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 0 3 3 3 3 3 3]
09:58:18 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 228. 0.]
[ 0. 0. 0. 0. 0.]
[ 6. 0. 0. 17. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:18 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:18 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:18 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:18 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:18 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.11948154956321788
09:58:18 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:18 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:18 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:18 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:544: 11 elements reached seafloor, interacting with bottom
09:58:18 DEBUG opendrift:707: Lifting 11 elements to seafloor.
09:58:18 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:18 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:18 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:18 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:18 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:18 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:18 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:18 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:18 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:18 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:18 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(231), np.int64(0), np.int64(26), np.int64(243), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:18 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:18 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:18 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:18 DEBUG opendrift:2095: ======================================================================
09:58:18 INFO opendrift:2096: 2025-06-16 16:28:03.273845 - step 14 of 96 - 500 active elements (0 deactivated)
09:58:18 DEBUG opendrift:2102: 0 elements scheduled.
09:58:18 DEBUG opendrift:2104: ======================================================================
09:58:18 DEBUG opendrift:2115: 57.545777775582316 <- latitude -> 57.67580164513292
09:58:18 DEBUG opendrift:2115: 10.514826242951942 <- longitude -> 10.685370078393786
09:58:18 DEBUG opendrift:2115: -22.57403564453125 <- z -> 0.0
09:58:18 DEBUG opendrift:2116: ---------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:18 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:18 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:18 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:18 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:18 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 16:00:00 (before)
2025-06-16 17:00:00 (after)
09:58:20 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:20 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:20 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:20 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:20 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:20 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:20 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 39x34x7) for time after (2025-06-16 17:00:00)
09:58:20 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 16:00:00) in space (linearNDFast)
09:58:20 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:20 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 17:00:00) in space (linearNDFast)
09:58:20 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:20 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 16:00:00, weight 0.53) and
after (2025-06-16 17:00:00, weight 0.47) in time
09:58:20 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:20 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184849485336 and -59.31464098572887 degrees.
09:58:20 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184849485336 and -59.31464098572887 degrees.
09:58:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:20 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:20 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:20 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:20 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:20 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:20 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:20 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:20 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:20 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:20 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.18285 (min) 0.276445 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0719355 (min) 0.178589 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0960898 (min) -0.0562513 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: x_wind: 11.2812 (min) 12.9636 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.48051 (min) 0.539039 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3279 (min) 22.8566 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4653 (min) 14.4717 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.0255 (min) 32.3639 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -4.04392e-05 (min) 0.000255322 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:20 DEBUG opendrift:671: No elements hit coastline.
09:58:20 DEBUG opendrift:707: Lifting 3 elements to seafloor.
09:58:20 DEBUG opendrift:1720: No elements to deactivate
09:58:20 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:20 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:20 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:20 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 17
09:58:20 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
09:58:20 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
09:58:20 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 245. 0.]
[ 0. 0. 0. 0. 0.]
[ 6. 0. 0. 19. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:20 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:20 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:20 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:20 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:20 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.12160034667202897
09:58:20 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:20 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:20 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:20 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:544: 17 elements reached seafloor, interacting with bottom
09:58:20 DEBUG opendrift:707: Lifting 17 elements to seafloor.
09:58:20 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:20 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:20 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:20 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:20 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:20 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:20 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:20 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(214), np.int64(0), np.int64(25), np.int64(261), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:20 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:20 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:20 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:20 DEBUG opendrift:2095: ======================================================================
09:58:20 INFO opendrift:2096: 2025-06-16 16:58:03.273845 - step 15 of 96 - 500 active elements (0 deactivated)
09:58:20 DEBUG opendrift:2102: 0 elements scheduled.
09:58:20 DEBUG opendrift:2104: ======================================================================
09:58:20 DEBUG opendrift:2115: 57.545777775582316 <- latitude -> 57.676765526587644
09:58:20 DEBUG opendrift:2115: 10.514826242951948 <- longitude -> 10.685370078393786
09:58:20 DEBUG opendrift:2115: -22.57403564453125 <- z -> -0.06268285437481158
09:58:20 DEBUG opendrift:2116: ---------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:20 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 16:00:00 (before)
2025-06-16 17:00:00 (after)
09:58:20 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 16:00:00) in space (linearNDFast)
09:58:20 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:20 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 17:00:00) in space (linearNDFast)
09:58:20 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:20 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 16:00:00, weight 0.03) and
after (2025-06-16 17:00:00, weight 0.97) in time
09:58:20 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:20 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184844185554 and -59.31464098572887 degrees.
09:58:20 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184844185554 and -59.31464098572887 degrees.
09:58:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:20 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:20 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:20 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:20 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:20 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:20 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:20 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:20 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:20 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:20 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.192428 (min) 0.286103 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0668916 (min) 0.170428 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.05157 (min) -0.011091 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: x_wind: 11.519 (min) 13.1368 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.645441 (min) 0.353045 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.2142 (min) 22.8566 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4553 (min) 14.4721 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.1373 (min) 32.3795 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -4.78253e-05 (min) 0.000274974 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:20 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:20 DEBUG opendrift:671: No elements hit coastline.
09:58:20 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:20 DEBUG opendrift:1720: No elements to deactivate
09:58:20 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:20 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:20 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:20 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 12
09:58:20 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0]
09:58:20 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3]
09:58:20 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 257. 0.]
[ 0. 0. 0. 0. 0.]
[ 6. 0. 0. 20. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:20 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:20 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:20 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:20 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:20 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.12477270295826198
09:58:20 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:20 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:20 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:20 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:544: 12 elements reached seafloor, interacting with bottom
09:58:20 DEBUG opendrift:707: Lifting 12 elements to seafloor.
09:58:20 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:20 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:20 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:20 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:20 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:20 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:20 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(202), np.int64(0), np.int64(25), np.int64(273), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:20 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:20 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:20 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:20 DEBUG opendrift:2095: ======================================================================
09:58:20 INFO opendrift:2096: 2025-06-16 17:28:03.273845 - step 16 of 96 - 500 active elements (0 deactivated)
09:58:20 DEBUG opendrift:2102: 0 elements scheduled.
09:58:20 DEBUG opendrift:2104: ======================================================================
09:58:20 DEBUG opendrift:2115: 57.545777775582316 <- latitude -> 57.67759570904848
09:58:20 DEBUG opendrift:2115: 10.514826242951948 <- longitude -> 10.685370078393786
09:58:20 DEBUG opendrift:2115: -22.57403564453125 <- z -> -0.06789672134358415
09:58:20 DEBUG opendrift:2116: ---------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:20 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 17:00:00 (before)
2025-06-16 18:00:00 (after)
09:58:21 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:21 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:21 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:21 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:21 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:21 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:21 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 40x34x7) for time after (2025-06-16 18:00:00)
09:58:21 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 17:00:00) in space (linearNDFast)
09:58:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:21 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 18:00:00) in space (linearNDFast)
09:58:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:21 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 17:00:00, weight 0.53) and
after (2025-06-16 18:00:00, weight 0.47) in time
09:58:21 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184844185554 and -59.31464098572887 degrees.
09:58:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184844185554 and -59.31464098572887 degrees.
09:58:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:21 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:21 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:21 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:21 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:21 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:21 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:21 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:21 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.193809 (min) 0.292456 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.050194 (min) 0.163602 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.020852 (min) 0.0182985 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: x_wind: 11.6584 (min) 13.3682 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.850106 (min) -0.071495 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.2758 (min) 22.8566 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4455 (min) 14.465 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.047 (min) 32.3867 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -4.04985e-05 (min) 0.000267991 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:21 DEBUG opendrift:671: No elements hit coastline.
09:58:21 DEBUG opendrift:702: No elements hit seafloor.
09:58:21 DEBUG opendrift:1720: No elements to deactivate
09:58:21 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:21 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:21 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:21 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 11
09:58:21 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0]
09:58:21 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3]
09:58:21 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 268. 0.]
[ 0. 0. 0. 0. 0.]
[ 6. 0. 0. 20. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:21 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:21 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:21 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:21 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:21 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.12915681116912528
09:58:21 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:21 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:21 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:21 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:544: 7 elements reached seafloor, interacting with bottom
09:58:21 DEBUG opendrift:707: Lifting 7 elements to seafloor.
09:58:21 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:21 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 2
09:58:21 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:21 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 2 elements
09:58:21 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:21 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(191), np.int64(0), np.int64(26), np.int64(283), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:21 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:21 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:21 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:21 DEBUG opendrift:2095: ======================================================================
09:58:21 INFO opendrift:2096: 2025-06-16 17:58:03.273845 - step 17 of 96 - 500 active elements (0 deactivated)
09:58:21 DEBUG opendrift:2102: 0 elements scheduled.
09:58:21 DEBUG opendrift:2104: ======================================================================
09:58:21 DEBUG opendrift:2115: 57.54577777558231 <- latitude -> 57.67850662777808
09:58:21 DEBUG opendrift:2115: 10.514826242951942 <- longitude -> 10.685370078393786
09:58:21 DEBUG opendrift:2115: -22.57403564453125 <- z -> 0.0
09:58:21 DEBUG opendrift:2116: ---------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:21 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:21 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 17:00:00 (before)
2025-06-16 18:00:00 (after)
09:58:21 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 17:00:00) in space (linearNDFast)
09:58:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:21 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 18:00:00) in space (linearNDFast)
09:58:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:21 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 17:00:00, weight 0.03) and
after (2025-06-16 18:00:00, weight 0.97) in time
09:58:21 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.31464098572887 degrees.
09:58:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.31464098572887 degrees.
09:58:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:21 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:21 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:21 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:21 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:21 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:21 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:21 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:21 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.225957 (min) 0.272439 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0326883 (min) 0.162413 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: 0.00890903 (min) 0.0465945 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: x_wind: 11.7787 (min) 13.587 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.08601 (min) -0.529358 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3279 (min) 22.8566 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4358 (min) 14.4113 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.5185 (min) 32.3933 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -3.69598e-05 (min) 0.00025916 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:21 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:21 DEBUG opendrift:671: No elements hit coastline.
09:58:21 DEBUG opendrift:702: No elements hit seafloor.
09:58:21 DEBUG opendrift:1720: No elements to deactivate
09:58:21 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:21 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:21 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:21 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 10
09:58:21 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 3 0 0 0 0 0 0 0 0]
09:58:21 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 0 3 3 3 3 3 3 3 3]
09:58:21 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 276. 0.]
[ 0. 0. 0. 0. 0.]
[ 6. 0. 0. 21. 0.]
[ 6. 0. 2. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:21 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:21 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:21 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:21 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:21 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.13366418883994052
09:58:21 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:21 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:21 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:21 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 37 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 33 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:21 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:21 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 6
09:58:21 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:21 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 6 elements
09:58:21 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:21 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(185), np.int64(0), np.int64(32), np.int64(283), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:21 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:21 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:21 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:21 DEBUG opendrift:2095: ======================================================================
09:58:21 INFO opendrift:2096: 2025-06-16 18:28:03.273845 - step 18 of 96 - 500 active elements (0 deactivated)
09:58:21 DEBUG opendrift:2102: 0 elements scheduled.
09:58:21 DEBUG opendrift:2104: ======================================================================
09:58:21 DEBUG opendrift:2115: 57.5457777755823 <- latitude -> 57.67922301279335
09:58:21 DEBUG opendrift:2115: 10.514826242951937 <- longitude -> 10.685370078393786
09:58:21 DEBUG opendrift:2115: -22.57403564453125 <- z -> -0.07505235322430392
09:58:21 DEBUG opendrift:2116: ---------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:21 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:21 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 18:00:00 (before)
2025-06-16 19:00:00 (after)
09:58:23 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:23 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:23 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:23 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:23 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:23 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:23 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 40x33x7) for time after (2025-06-16 19:00:00)
09:58:23 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 18:00:00) in space (linearNDFast)
09:58:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:23 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 19:00:00) in space (linearNDFast)
09:58:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:23 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 18:00:00, weight 0.53) and
after (2025-06-16 19:00:00, weight 0.47) in time
09:58:23 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:23 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.31464098572887 degrees.
09:58:23 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.31464098572887 degrees.
09:58:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:23 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:23 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:23 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:23 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:23 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:23 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:23 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:23 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:23 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:23 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:23 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:23 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.225903 (min) 0.28369 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0427132 (min) 0.16993 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: 0.0147792 (min) 0.0536866 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: x_wind: 11.9432 (min) 13.7428 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.1311 (min) -0.632688 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3279 (min) 22.8566 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4328 (min) 14.4002 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.8318 (min) 32.3928 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -4.96895e-05 (min) 0.000250871 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:23 DEBUG opendrift:671: No elements hit coastline.
09:58:23 DEBUG opendrift:702: No elements hit seafloor.
09:58:23 DEBUG opendrift:1720: No elements to deactivate
09:58:23 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:23 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:23 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:23 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 12
09:58:23 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0 0 0 0 0 0]
09:58:23 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3 3 3 3 3 3]
09:58:23 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 288. 0.]
[ 0. 0. 0. 0. 0.]
[ 6. 0. 0. 21. 0.]
[ 6. 0. 8. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:23 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:23 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:23 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:23 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:23 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.13682829797706003
09:58:23 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:23 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:23 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:23 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:23 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:23 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:23 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:23 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:23 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 11
09:58:23 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:23 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 11 elements
09:58:23 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:23 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(173), np.int64(0), np.int64(41), np.int64(286), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:23 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:23 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:23 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:23 DEBUG opendrift:2095: ======================================================================
09:58:23 INFO opendrift:2096: 2025-06-16 18:58:03.273845 - step 19 of 96 - 500 active elements (0 deactivated)
09:58:23 DEBUG opendrift:2102: 0 elements scheduled.
09:58:23 DEBUG opendrift:2104: ======================================================================
09:58:23 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.680793582376474
09:58:23 DEBUG opendrift:2115: 10.514826242951937 <- longitude -> 10.689390531605317
09:58:23 DEBUG opendrift:2115: -22.57403564453125 <- z -> 0.0
09:58:23 DEBUG opendrift:2116: ---------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:23 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:23 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 18:00:00 (before)
2025-06-16 19:00:00 (after)
09:58:23 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 18:00:00) in space (linearNDFast)
09:58:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:23 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 19:00:00) in space (linearNDFast)
09:58:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:23 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 18:00:00, weight 0.03) and
after (2025-06-16 19:00:00, weight 0.97) in time
09:58:23 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:23 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.310620522188096 degrees.
09:58:23 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.310620522188096 degrees.
09:58:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:23 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:23 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:23 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:23 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:23 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:23 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:23 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:23 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:23 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:23 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:23 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:23 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.242591 (min) 0.298161 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0363191 (min) 0.188255 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: 0.0171264 (min) 0.059893 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: x_wind: 12.0952 (min) 13.9061 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.17114 (min) -0.703544 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3279 (min) 22.8566 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4302 (min) 14.3443 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.3859 (min) 32.3918 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -2.46214e-05 (min) 0.00025857 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:23 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:23 DEBUG opendrift:671: No elements hit coastline.
09:58:23 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:23 DEBUG opendrift:1720: No elements to deactivate
09:58:23 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:23 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:23 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:23 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 11
09:58:23 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 2 0 0 0 0]
09:58:23 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 0 3 3 3 3]
09:58:23 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 298. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 23. 0.]
[ 6. 0. 19. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:23 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:23 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:23 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:23 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:23 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.1401919485816009
09:58:23 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:23 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:23 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:23 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:23 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:23 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 9
09:58:23 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:23 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 9 elements
09:58:23 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:23 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(164), np.int64(0), np.int64(49), np.int64(287), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:23 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:23 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:23 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:23 DEBUG opendrift:2095: ======================================================================
09:58:23 INFO opendrift:2096: 2025-06-16 19:28:03.273845 - step 20 of 96 - 500 active elements (0 deactivated)
09:58:23 DEBUG opendrift:2102: 0 elements scheduled.
09:58:23 DEBUG opendrift:2104: ======================================================================
09:58:23 DEBUG opendrift:2115: 57.5457777755823 <- latitude -> 57.68163176667933
09:58:23 DEBUG opendrift:2115: 10.514826242951937 <- longitude -> 10.692483386548954
09:58:23 DEBUG opendrift:2115: -22.57403564453125 <- z -> 0.0
09:58:23 DEBUG opendrift:2116: ---------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:23 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:23 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 19:00:00 (before)
2025-06-16 20:00:00 (after)
09:58:24 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:24 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:24 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:24 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:24 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:24 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:24 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 41x33x7) for time after (2025-06-16 20:00:00)
09:58:24 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 19:00:00) in space (linearNDFast)
09:58:24 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:24 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 20:00:00) in space (linearNDFast)
09:58:24 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:24 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 19:00:00, weight 0.53) and
after (2025-06-16 20:00:00, weight 0.47) in time
09:58:24 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:24 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.307527668836244 degrees.
09:58:24 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.307527668836244 degrees.
09:58:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:24 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:24 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:24 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:24 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:24 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:24 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:24 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:24 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:24 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:24 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.238167 (min) 0.311579 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.047841 (min) 0.231441 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: 0.00466089 (min) 0.0510688 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: x_wind: 11.8557 (min) 13.8934 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.887493 (min) -0.347695 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3279 (min) 22.8566 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4325 (min) 14.3026 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.4386 (min) 32.3851 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -1.278e-05 (min) 0.000252045 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:24 DEBUG opendrift:671: No elements hit coastline.
09:58:24 DEBUG opendrift:702: No elements hit seafloor.
09:58:24 DEBUG opendrift:1720: No elements to deactivate
09:58:24 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:24 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:24 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:24 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
09:58:24 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0]
09:58:24 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3]
09:58:24 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 303. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 23. 0.]
[ 6. 0. 28. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:24 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:24 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:24 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:24 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:24 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.1396873896934552
09:58:24 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:24 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:24 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:24 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 31 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 35 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:24 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:24 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:24 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 10
09:58:24 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:24 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 10 elements
09:58:24 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:24 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(159), np.int64(0), np.int64(58), np.int64(283), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:24 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:24 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:24 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:24 DEBUG opendrift:2095: ======================================================================
09:58:24 INFO opendrift:2096: 2025-06-16 19:58:03.273845 - step 21 of 96 - 500 active elements (0 deactivated)
09:58:24 DEBUG opendrift:2102: 0 elements scheduled.
09:58:24 DEBUG opendrift:2104: ======================================================================
09:58:24 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.682446743322345
09:58:24 DEBUG opendrift:2115: 10.51482624295194 <- longitude -> 10.698449508188581
09:58:24 DEBUG opendrift:2115: -22.57403564453125 <- z -> 0.0
09:58:24 DEBUG opendrift:2116: ---------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:24 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 19:00:00 (before)
2025-06-16 20:00:00 (after)
09:58:24 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 19:00:00) in space (linearNDFast)
09:58:24 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:24 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 20:00:00) in space (linearNDFast)
09:58:24 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:24 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 19:00:00, weight 0.03) and
after (2025-06-16 20:00:00, weight 0.97) in time
09:58:24 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:24 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.30156154293187 degrees.
09:58:24 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.30156154293187 degrees.
09:58:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:24 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:24 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:24 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:24 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:24 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:24 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:24 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:24 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:24 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:24 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.235407 (min) 0.336282 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.04522 (min) 0.251789 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.00826899 (min) 0.0412022 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: x_wind: 11.6316 (min) 13.8677 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.635782 (min) 0.0349692 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3279 (min) 22.8566 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4352 (min) 14.2436 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.7509 (min) 32.3785 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -9.04022e-06 (min) 0.000253937 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:24 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:24 DEBUG opendrift:671: No elements hit coastline.
09:58:24 DEBUG opendrift:707: Lifting 2 elements to seafloor.
09:58:24 DEBUG opendrift:1720: No elements to deactivate
09:58:24 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:24 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:24 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:24 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 8
09:58:24 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 2 0]
09:58:24 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 0 3]
09:58:24 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 310. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 24. 0.]
[ 6. 0. 38. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:24 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:24 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:24 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:24 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:24 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.13901978014834937
09:58:24 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:24 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:24 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:24 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:24 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:24 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 32 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:24 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:24 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 29 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:24 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:24 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 13
09:58:24 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:24 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 13 elements
09:58:24 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:24 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(153), np.int64(0), np.int64(68), np.int64(279), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:24 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:24 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:24 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:24 DEBUG opendrift:2095: ======================================================================
09:58:24 INFO opendrift:2096: 2025-06-16 20:28:03.273845 - step 22 of 96 - 500 active elements (0 deactivated)
09:58:24 DEBUG opendrift:2102: 0 elements scheduled.
09:58:24 DEBUG opendrift:2104: ======================================================================
09:58:24 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.68390779299682
09:58:24 DEBUG opendrift:2115: 10.51482624295194 <- longitude -> 10.703546441789916
09:58:24 DEBUG opendrift:2115: -22.57403564453125 <- z -> 0.0
09:58:24 DEBUG opendrift:2116: ---------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:24 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 20:00:00 (before)
2025-06-16 21:00:00 (after)
09:58:26 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:26 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:26 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:26 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:26 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:26 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:26 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 41x33x7) for time after (2025-06-16 21:00:00)
09:58:26 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 20:00:00) in space (linearNDFast)
09:58:26 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:26 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 21:00:00) in space (linearNDFast)
09:58:26 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:26 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 20:00:00, weight 0.53) and
after (2025-06-16 21:00:00, weight 0.47) in time
09:58:26 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:26 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.296464615577406 degrees.
09:58:26 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.296464615577406 degrees.
09:58:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:26 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:26 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:26 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:26 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:26 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:26 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:26 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:26 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:26 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:26 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.218124 (min) 0.323362 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0111095 (min) 0.294788 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0309235 (min) 0.0220939 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: x_wind: 11.2261 (min) 13.6486 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.543282 (min) 0.0485467 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3279 (min) 22.8566 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4401 (min) 14.1915 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.1829 (min) 32.3659 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -1.20955e-05 (min) 0.000229133 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:26 DEBUG opendrift:671: No elements hit coastline.
09:58:26 DEBUG opendrift:707: Lifting 9 elements to seafloor.
09:58:26 DEBUG opendrift:1720: No elements to deactivate
09:58:26 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:26 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:26 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:26 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 7
09:58:26 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0]
09:58:26 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3]
09:58:26 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 317. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 26. 0.]
[ 6. 0. 51. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:26 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:26 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:26 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:26 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:26 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.13466890060506162
09:58:26 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:26 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:26 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:26 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:544: 5 elements reached seafloor, interacting with bottom
09:58:26 DEBUG opendrift:707: Lifting 5 elements to seafloor.
09:58:26 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 30 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:26 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:26 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:26 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 3
09:58:26 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:26 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 3 elements
09:58:26 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:26 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(146), np.int64(0), np.int64(70), np.int64(284), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:26 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:26 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:26 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:26 DEBUG opendrift:2095: ======================================================================
09:58:26 INFO opendrift:2096: 2025-06-16 20:58:03.273845 - step 23 of 96 - 500 active elements (0 deactivated)
09:58:26 DEBUG opendrift:2102: 0 elements scheduled.
09:58:26 DEBUG opendrift:2104: ======================================================================
09:58:26 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.68719909516547
09:58:26 DEBUG opendrift:2115: 10.514826242951937 <- longitude -> 10.706816638735562
09:58:26 DEBUG opendrift:2115: -22.57403564453125 <- z -> 0.0
09:58:26 DEBUG opendrift:2116: ---------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:26 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 20:00:00 (before)
2025-06-16 21:00:00 (after)
09:58:26 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 20:00:00) in space (linearNDFast)
09:58:26 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:26 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 21:00:00) in space (linearNDFast)
09:58:26 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:26 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 20:00:00, weight 0.03) and
after (2025-06-16 21:00:00, weight 0.97) in time
09:58:26 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:26 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.293194411390715 degrees.
09:58:26 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.293194411390715 degrees.
09:58:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:26 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:26 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:26 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:26 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:26 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:26 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:26 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:26 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:26 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:26 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.199833 (min) 0.334577 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0176465 (min) 0.337618 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0537158 (min) 0.00234464 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.8198 (min) 13.4132 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.521944 (min) 0.0282174 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3279 (min) 22.8566 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4451 (min) 14.1542 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.988 (min) 32.3534 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -1.45404e-05 (min) 0.000206612 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:26 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:26 DEBUG opendrift:671: No elements hit coastline.
09:58:26 DEBUG opendrift:707: Lifting 13 elements to seafloor.
09:58:26 DEBUG opendrift:1720: No elements to deactivate
09:58:26 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:26 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:26 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:26 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 6
09:58:26 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0]
09:58:26 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3]
09:58:26 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 323. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 27. 0.]
[ 6. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:26 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:26 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:26 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:26 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:26 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.1302095089148761
09:58:26 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:26 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:26 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:26 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:544: 6 elements reached seafloor, interacting with bottom
09:58:26 DEBUG opendrift:707: Lifting 6 elements to seafloor.
09:58:26 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:26 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:26 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:26 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:26 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 27 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:26 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:26 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:26 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:26 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:26 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:26 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(140), np.int64(0), np.int64(68), np.int64(292), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:26 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:26 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:26 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:26 DEBUG opendrift:2095: ======================================================================
09:58:26 INFO opendrift:2096: 2025-06-16 21:28:03.273845 - step 24 of 96 - 500 active elements (0 deactivated)
09:58:26 DEBUG opendrift:2102: 0 elements scheduled.
09:58:26 DEBUG opendrift:2104: ======================================================================
09:58:26 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.68904300358509
09:58:26 DEBUG opendrift:2115: 10.514826242951937 <- longitude -> 10.713199515248318
09:58:26 DEBUG opendrift:2115: -22.57403564453125 <- z -> 0.0
09:58:26 DEBUG opendrift:2116: ---------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:26 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 21:00:00 (before)
2025-06-16 22:00:00 (after)
09:58:27 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:27 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:27 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:27 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:27 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:27 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:27 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 42x33x7) for time after (2025-06-16 22:00:00)
09:58:27 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 21:00:00) in space (linearNDFast)
09:58:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:27 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 22:00:00) in space (linearNDFast)
09:58:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:27 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 21:00:00, weight 0.53) and
after (2025-06-16 22:00:00, weight 0.47) in time
09:58:27 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184844185554 and -59.28681153887829 degrees.
09:58:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184844185554 and -59.28681153887829 degrees.
09:58:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:27 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:27 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:27 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:27 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:27 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:27 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:27 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:27 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.172959 (min) 0.352809 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0492045 (min) 0.367528 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0853603 (min) -0.0286961 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.2721 (min) 12.9648 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.0161093 (min) 0.589837 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3279 (min) 22.8566 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4524 (min) 14.0995 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.1278 (min) 32.3359 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -1.78635e-05 (min) 0.000178698 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:27 DEBUG opendrift:671: No elements hit coastline.
09:58:27 DEBUG opendrift:707: Lifting 34 elements to seafloor.
09:58:27 DEBUG opendrift:1720: No elements to deactivate
09:58:27 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:27 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:27 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:27 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 6
09:58:27 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0]
09:58:27 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3]
09:58:27 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 329. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 29. 0.]
[ 6. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:27 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:27 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:27 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:27 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:27 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.12149858476019328
09:58:27 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:27 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:27 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:27 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:544: 6 elements reached seafloor, interacting with bottom
09:58:27 DEBUG opendrift:707: Lifting 6 elements to seafloor.
09:58:27 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:27 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:27 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 24 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 28 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:27 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:27 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:27 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:27 DEBUG opendrift.models.oceandrift:524: 26 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 22 elements penetrated seafloor, lifting up
09:58:27 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:27 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:27 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:27 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:27 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(134), np.int64(0), np.int64(65), np.int64(301), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:27 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:27 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:27 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:27 DEBUG opendrift:2095: ======================================================================
09:58:27 INFO opendrift:2096: 2025-06-16 21:58:03.273845 - step 25 of 96 - 500 active elements (0 deactivated)
09:58:27 DEBUG opendrift:2102: 0 elements scheduled.
09:58:27 DEBUG opendrift:2104: ======================================================================
09:58:27 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.69293529437882
09:58:27 DEBUG opendrift:2115: 10.514826242951937 <- longitude -> 10.71010898732701
09:58:27 DEBUG opendrift:2115: -22.57403564453125 <- z -> 0.0
09:58:27 DEBUG opendrift:2116: ---------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:27 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:27 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 21:00:00 (before)
2025-06-16 22:00:00 (after)
09:58:27 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 21:00:00) in space (linearNDFast)
09:58:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:27 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 22:00:00) in space (linearNDFast)
09:58:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:27 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 21:00:00, weight 0.03) and
after (2025-06-16 22:00:00, weight 0.97) in time
09:58:27 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.28990206491213 degrees.
09:58:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.28990206491213 degrees.
09:58:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:27 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:27 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:27 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:27 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:27 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:27 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:27 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:27 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.14549 (min) 0.362764 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0758145 (min) 0.401771 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.118592 (min) -0.0605198 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.71603 (min) 12.5739 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.620658 (min) 1.33238 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.2685 (min) 22.8566 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4574 (min) 14.0739 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.1384 (min) 32.3181 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -2.0889e-05 (min) 0.000156948 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:27 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:27 DEBUG opendrift:671: No elements hit coastline.
09:58:27 DEBUG opendrift:707: Lifting 60 elements to seafloor.
09:58:27 DEBUG opendrift:1720: No elements to deactivate
09:58:27 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:27 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:27 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:27 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:58:27 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
09:58:27 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
09:58:27 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 330. 0.]
[ 0. 0. 0. 0. 0.]
[ 8. 0. 0. 32. 0.]
[ 6. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:27 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:27 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:27 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:27 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:27 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.11459771919121471
09:58:27 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:27 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:27 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:27 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:27 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:27 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:27 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:27 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:27 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:27 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:27 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:27 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(133), np.int64(0), np.int64(65), np.int64(302), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:27 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:27 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:27 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:27 DEBUG opendrift:2095: ======================================================================
09:58:27 INFO opendrift:2096: 2025-06-16 22:28:03.273845 - step 26 of 96 - 500 active elements (0 deactivated)
09:58:27 DEBUG opendrift:2102: 0 elements scheduled.
09:58:27 DEBUG opendrift:2104: ======================================================================
09:58:27 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.69725255083417
09:58:27 DEBUG opendrift:2115: 10.514826242951937 <- longitude -> 10.708526058182382
09:58:27 DEBUG opendrift:2115: -22.57403564453125 <- z -> 0.0
09:58:27 DEBUG opendrift:2116: ---------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:27 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:27 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 22:00:00 (before)
2025-06-16 23:00:00 (after)
09:58:28 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:28 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:28 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:28 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:28 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:28 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:28 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 43x33x7) for time after (2025-06-16 23:00:00)
09:58:28 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 22:00:00) in space (linearNDFast)
09:58:28 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:28 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 23:00:00) in space (linearNDFast)
09:58:28 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:28 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 22:00:00, weight 0.53) and
after (2025-06-16 23:00:00, weight 0.47) in time
09:58:28 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:28 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184844185554 and -59.29148500306199 degrees.
09:58:28 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184844185554 and -59.29148500306199 degrees.
09:58:28 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:28 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:28 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:28 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:28 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:28 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:28 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:28 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:28 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:28 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:28 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:28 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:28 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:28 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:28 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:28 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:28 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:28 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:28 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:28 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:28 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:28 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:28 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:28 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:28 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:28 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:28 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:28 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:28 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:28 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.12829 (min) 0.392524 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0866016 (min) 0.4261 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.161724 (min) -0.102727 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.43257 (min) 11.9285 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.874545 (min) 1.68415 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3206 (min) 22.8566 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4624 (min) 13.985 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.3956 (min) 32.2965 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -2.35671e-05 (min) 0.000139198 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:28 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:28 DEBUG opendrift:671: No elements hit coastline.
09:58:28 DEBUG opendrift:707: Lifting 74 elements to seafloor.
09:58:29 DEBUG opendrift:1720: No elements to deactivate
09:58:29 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:29 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:29 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:29 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 7
09:58:29 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 2 0 0 0]
09:58:29 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 0 3 3 3]
09:58:29 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 336. 0.]
[ 0. 0. 0. 0. 0.]
[ 9. 0. 0. 32. 0.]
[ 6. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:29 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:29 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:29 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:29 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:29 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.1033770915328382
09:58:29 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:29 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:29 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:29 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:544: 6 elements reached seafloor, interacting with bottom
09:58:29 DEBUG opendrift:707: Lifting 6 elements to seafloor.
09:58:29 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:29 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:29 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:29 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:29 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:29 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:29 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:29 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:29 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:29 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:29 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(128), np.int64(0), np.int64(61), np.int64(311), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:29 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:29 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:29 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:29 DEBUG opendrift:2095: ======================================================================
09:58:29 INFO opendrift:2096: 2025-06-16 22:58:03.273845 - step 27 of 96 - 500 active elements (0 deactivated)
09:58:29 DEBUG opendrift:2102: 0 elements scheduled.
09:58:29 DEBUG opendrift:2104: ======================================================================
09:58:29 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.700986811965805
09:58:29 DEBUG opendrift:2115: 10.514826242951935 <- longitude -> 10.714477115571212
09:58:29 DEBUG opendrift:2115: -22.57403564453125 <- z -> -0.04411542121017664
09:58:29 DEBUG opendrift:2116: ---------------------------------
09:58:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:29 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 22:00:00 (before)
2025-06-16 23:00:00 (after)
09:58:29 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 22:00:00) in space (linearNDFast)
09:58:29 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:29 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-16 23:00:00) in space (linearNDFast)
09:58:29 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:29 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 22:00:00, weight 0.03) and
after (2025-06-16 23:00:00, weight 0.97) in time
09:58:29 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:29 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184844185554 and -59.28553392498046 degrees.
09:58:29 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184844185554 and -59.28553392498046 degrees.
09:58:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:29 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:29 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:29 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:29 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:29 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:29 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:29 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:29 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:29 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:29 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:29 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.108698 (min) 0.377826 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.137748 (min) 0.452278 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.20606 (min) -0.145654 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.11954 (min) 11.3055 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.01652 (min) 2.01294 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.2494 (min) 22.8566 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4674 (min) 14.0319 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.2803 (min) 32.2745 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -3.33646e-05 (min) 0.000133594 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:29 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:29 DEBUG opendrift:671: No elements hit coastline.
09:58:29 DEBUG opendrift:707: Lifting 93 elements to seafloor.
09:58:29 DEBUG opendrift:1720: No elements to deactivate
09:58:29 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:29 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:29 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:29 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 6
09:58:29 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 2 0]
09:58:29 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 0 3]
09:58:29 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 341. 0.]
[ 0. 0. 0. 0. 0.]
[ 10. 0. 0. 35. 0.]
[ 6. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:29 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:29 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:29 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:29 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:29 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.09315796998401983
09:58:29 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:29 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:29 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:29 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:544: 5 elements reached seafloor, interacting with bottom
09:58:29 DEBUG opendrift:707: Lifting 5 elements to seafloor.
09:58:29 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:29 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:29 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:29 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:29 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:29 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:29 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 25 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:29 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:29 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:29 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:29 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:29 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:29 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(124), np.int64(0), np.int64(57), np.int64(319), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:29 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:29 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:29 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:29 DEBUG opendrift:2095: ======================================================================
09:58:29 INFO opendrift:2096: 2025-06-16 23:28:03.273845 - step 28 of 96 - 500 active elements (0 deactivated)
09:58:29 DEBUG opendrift:2102: 0 elements scheduled.
09:58:29 DEBUG opendrift:2104: ======================================================================
09:58:29 DEBUG opendrift:2115: 57.54577777558229 <- latitude -> 57.70460662714807
09:58:29 DEBUG opendrift:2115: 10.514826242951933 <- longitude -> 10.714661558842954
09:58:29 DEBUG opendrift:2115: -22.57403564453125 <- z -> 0.0
09:58:29 DEBUG opendrift:2116: ---------------------------------
09:58:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:29 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 23:00:00 (before)
2025-06-17 00:00:00 (after)
09:58:30 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:30 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:30 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:30 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:30 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:30 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:30 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 45x33x7) for time after (2025-06-17 00:00:00)
09:58:30 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 23:00:00) in space (linearNDFast)
09:58:30 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:30 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 00:00:00) in space (linearNDFast)
09:58:30 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:30 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 23:00:00, weight 0.53) and
after (2025-06-17 00:00:00, weight 0.47) in time
09:58:30 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:30 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.28534947845624 degrees.
09:58:30 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.28534947845624 degrees.
09:58:30 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:30 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:30 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:30 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:30 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:30 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:30 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:30 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:30 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:30 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:30 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:30 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:30 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:30 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:30 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:30 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:30 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:30 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:30 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:30 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:30 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:30 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:30 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0964594 (min) 0.408635 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.132519 (min) 0.459894 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.254402 (min) -0.194288 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.09895 (min) 11.4495 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.07306 (min) 1.97646 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.2636 (min) 22.8566 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4727 (min) 14.009 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.547 (min) 32.2534 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -4.0443e-05 (min) 0.000136189 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:30 DEBUG opendrift:671: No elements hit coastline.
09:58:30 DEBUG opendrift:707: Lifting 110 elements to seafloor.
09:58:30 DEBUG opendrift:1720: No elements to deactivate
09:58:30 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:30 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:30 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:30 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 6
09:58:30 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 3 2 0]
09:58:30 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 0 0 3]
09:58:30 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 345. 0.]
[ 0. 0. 0. 0. 0.]
[ 11. 0. 0. 38. 0.]
[ 7. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:30 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:30 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:30 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:30 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:30 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.0955654102508889
09:58:30 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:30 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:30 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:30 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:544: 4 elements reached seafloor, interacting with bottom
09:58:30 DEBUG opendrift:707: Lifting 4 elements to seafloor.
09:58:30 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:30 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:30 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 23 elements penetrated seafloor, lifting up
09:58:30 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:30 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:30 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:30 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:30 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(122), np.int64(0), np.int64(55), np.int64(323), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:30 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:30 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:30 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:30 DEBUG opendrift:2095: ======================================================================
09:58:30 INFO opendrift:2096: 2025-06-16 23:58:03.273845 - step 29 of 96 - 500 active elements (0 deactivated)
09:58:30 DEBUG opendrift:2102: 0 elements scheduled.
09:58:30 DEBUG opendrift:2104: ======================================================================
09:58:30 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.709632093949374
09:58:30 DEBUG opendrift:2115: 10.514826242951932 <- longitude -> 10.724545531649513
09:58:30 DEBUG opendrift:2115: -22.57403564453125 <- z -> -0.04226134280274074
09:58:30 DEBUG opendrift:2116: ---------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:30 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:30 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:30 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:30 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-16 23:00:00 (before)
2025-06-17 00:00:00 (after)
09:58:30 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-16 23:00:00) in space (linearNDFast)
09:58:30 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:30 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 00:00:00) in space (linearNDFast)
09:58:30 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:30 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-16 23:00:00, weight 0.03) and
after (2025-06-17 00:00:00, weight 0.97) in time
09:58:30 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:30 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.27546552108603 degrees.
09:58:30 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.27546552108603 degrees.
09:58:30 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:30 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:30 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:30 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:30 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:30 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:30 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:30 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:30 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:30 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:30 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:30 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:30 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:30 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:30 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:30 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:30 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:30 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:30 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:30 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:30 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:30 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:30 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0845888 (min) 0.436611 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.126745 (min) 0.47434 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.303564 (min) -0.243318 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.10991 (min) 11.6087 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.15524 (min) 1.92052 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3279 (min) 22.8566 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.478 (min) 13.988 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.4911 (min) 32.2344 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -8.0274e-05 (min) 0.00014015 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:30 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:30 DEBUG opendrift:671: No elements hit coastline.
09:58:30 DEBUG opendrift:707: Lifting 150 elements to seafloor.
09:58:30 DEBUG opendrift:1720: No elements to deactivate
09:58:30 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:30 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:30 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:30 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
09:58:30 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 2 2]
09:58:30 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 0 0]
09:58:30 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 348. 0.]
[ 0. 0. 0. 0. 0.]
[ 13. 0. 0. 39. 0.]
[ 7. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:30 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:30 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:30 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:30 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:30 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.09835053181821451
09:58:30 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:30 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:30 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:30 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:544: 3 elements reached seafloor, interacting with bottom
09:58:30 DEBUG opendrift:707: Lifting 3 elements to seafloor.
09:58:30 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:30 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:30 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:30 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:30 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:30 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:30 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(121), np.int64(0), np.int64(53), np.int64(326), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:30 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:30 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:30 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:30 DEBUG opendrift:2095: ======================================================================
09:58:30 INFO opendrift:2096: 2025-06-17 00:28:03.273845 - step 30 of 96 - 500 active elements (0 deactivated)
09:58:30 DEBUG opendrift:2102: 0 elements scheduled.
09:58:30 DEBUG opendrift:2104: ======================================================================
09:58:30 DEBUG opendrift:2115: 57.5457777755823 <- latitude -> 57.713921215663724
09:58:30 DEBUG opendrift:2115: 10.514826242951932 <- longitude -> 10.731235690410305
09:58:30 DEBUG opendrift:2115: -22.57403564453125 <- z -> -0.01817197225038547
09:58:30 DEBUG opendrift:2116: ---------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:30 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:30 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:30 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:30 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:30 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 00:00:00 (before)
2025-06-17 01:00:00 (after)
09:58:31 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:31 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:31 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:31 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:31 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:31 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:31 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 47x33x7) for time after (2025-06-17 01:00:00)
09:58:31 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 00:00:00) in space (linearNDFast)
09:58:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:31 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 01:00:00) in space (linearNDFast)
09:58:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:31 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 00:00:00, weight 0.53) and
after (2025-06-17 01:00:00, weight 0.47) in time
09:58:31 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.268775352870286 degrees.
09:58:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.268775352870286 degrees.
09:58:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:31 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:31 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:31 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:31 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:31 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:31 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0889901 (min) 0.448542 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.114291 (min) 0.451232 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.344452 (min) -0.292086 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.12764 (min) 11.5783 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.11078 (min) 1.75346 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3279 (min) 23.0297 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4819 (min) 13.9584 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.3761 (min) 32.2162 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000104741 (min) 0.000134071 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:31 DEBUG opendrift:671: No elements hit coastline.
09:58:31 DEBUG opendrift:707: Lifting 326 elements to seafloor.
09:58:31 DEBUG opendrift:1720: No elements to deactivate
09:58:31 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:31 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:31 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:31 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:58:31 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
09:58:31 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
09:58:31 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 349. 0.]
[ 0. 0. 0. 0. 0.]
[ 13. 0. 0. 39. 0.]
[ 7. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:31 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:31 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:31 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:31 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:31 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.09786604005145637
09:58:31 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:31 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:31 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:31 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:31 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:31 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 21 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:31 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:31 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:31 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:31 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:31 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(120), np.int64(0), np.int64(53), np.int64(327), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:31 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:31 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:31 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:31 DEBUG opendrift:2095: ======================================================================
09:58:31 INFO opendrift:2096: 2025-06-17 00:58:03.273845 - step 31 of 96 - 500 active elements (0 deactivated)
09:58:31 DEBUG opendrift:2102: 0 elements scheduled.
09:58:31 DEBUG opendrift:2104: ======================================================================
09:58:31 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.71822901311428
09:58:31 DEBUG opendrift:2115: 10.514826242951932 <- longitude -> 10.736680340172047
09:58:31 DEBUG opendrift:2115: -22.56450843811035 <- z -> -0.2119372667935906
09:58:31 DEBUG opendrift:2116: ---------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:31 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 00:00:00 (before)
2025-06-17 01:00:00 (after)
09:58:31 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 00:00:00) in space (linearNDFast)
09:58:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:31 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 01:00:00) in space (linearNDFast)
09:58:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:31 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 00:00:00, weight 0.03) and
after (2025-06-17 01:00:00, weight 0.97) in time
09:58:31 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184844185554 and -59.263330693389776 degrees.
09:58:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184844185554 and -59.263330693389776 degrees.
09:58:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:31 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:31 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:31 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:31 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:31 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:31 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0945198 (min) 0.456717 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.101373 (min) 0.459304 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.390784 (min) -0.340835 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.09376 (min) 11.5379 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.04958 (min) 1.61347 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3279 (min) 23.5753 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4858 (min) 13.8287 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.54 (min) 32.1981 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000155367 (min) 0.000128203 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:31 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:31 DEBUG opendrift:671: No elements hit coastline.
09:58:31 DEBUG opendrift:707: Lifting 327 elements to seafloor.
09:58:31 DEBUG opendrift:1720: No elements to deactivate
09:58:31 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:31 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:31 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:31 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
09:58:31 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 0]
09:58:31 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3]
09:58:31 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 350. 0.]
[ 0. 0. 0. 0. 0.]
[ 13. 0. 0. 39. 0.]
[ 8. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:31 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:31 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:31 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:31 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:31 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.0971626810919997
09:58:31 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:31 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:31 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:31 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:31 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:31 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 20 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:31 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:31 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:31 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:31 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:31 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:31 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(120), np.int64(0), np.int64(53), np.int64(327), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:31 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:31 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:31 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:31 DEBUG opendrift:2095: ======================================================================
09:58:31 INFO opendrift:2096: 2025-06-17 01:28:03.273845 - step 32 of 96 - 500 active elements (0 deactivated)
09:58:31 DEBUG opendrift:2102: 0 elements scheduled.
09:58:31 DEBUG opendrift:2104: ======================================================================
09:58:31 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.722304954349404
09:58:31 DEBUG opendrift:2115: 10.514826242951932 <- longitude -> 10.747202050419666
09:58:31 DEBUG opendrift:2115: -22.515758514404297 <- z -> -0.15501568790393083
09:58:31 DEBUG opendrift:2116: ---------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:31 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 01:00:00 (before)
2025-06-17 02:00:00 (after)
09:58:33 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:33 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:33 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:33 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:33 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:33 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:33 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 48x33x7) for time after (2025-06-17 02:00:00)
09:58:33 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 01:00:00) in space (linearNDFast)
09:58:33 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:33 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 02:00:00) in space (linearNDFast)
09:58:33 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:33 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 01:00:00, weight 0.53) and
after (2025-06-17 02:00:00, weight 0.47) in time
09:58:33 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:33 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.25280897828939 degrees.
09:58:33 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.485184838885765 and -59.25280897828939 degrees.
09:58:33 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:33 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:33 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:33 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:33 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:33 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:33 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:33 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:33 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:33 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:33 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:33 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:33 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:33 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:33 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:33 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:33 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:33 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:33 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:33 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:33 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:33 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:33 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.10392 (min) 0.469581 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0867786 (min) 0.43113 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.402657 (min) -0.353747 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.39757 (min) 11.1445 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.819074 (min) 1.43875 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.2849 (min) 24.3144 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4863 (min) 13.8895 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.6429 (min) 32.1904 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000188874 (min) 0.000142676 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:33 DEBUG opendrift:671: No elements hit coastline.
09:58:33 DEBUG opendrift:707: Lifting 327 elements to seafloor.
09:58:33 DEBUG opendrift:1720: No elements to deactivate
09:58:33 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:33 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:33 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:33 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
09:58:33 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 2 3 3 0]
09:58:33 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 0 0 0 3]
09:58:33 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 351. 0.]
[ 0. 0. 0. 0. 0.]
[ 14. 0. 0. 39. 0.]
[ 11. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:33 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:33 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:33 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:33 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:33 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.09027367079987182
09:58:33 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:33 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:33 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:33 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:33 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:33 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:33 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:33 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:33 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:33 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:33 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:33 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:33 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(123), np.int64(0), np.int64(51), np.int64(326), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:33 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:33 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:33 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:33 DEBUG opendrift:2095: ======================================================================
09:58:33 INFO opendrift:2096: 2025-06-17 01:58:03.273845 - step 33 of 96 - 500 active elements (0 deactivated)
09:58:33 DEBUG opendrift:2102: 0 elements scheduled.
09:58:33 DEBUG opendrift:2104: ======================================================================
09:58:33 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.72604115040253
09:58:33 DEBUG opendrift:2115: 10.51362393386553 <- longitude -> 10.759666170491473
09:58:33 DEBUG opendrift:2115: -22.50284767150879 <- z -> -0.33829415645222727
09:58:33 DEBUG opendrift:2116: ---------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:33 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:33 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:33 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:33 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 01:00:00 (before)
2025-06-17 02:00:00 (after)
09:58:33 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 01:00:00) in space (linearNDFast)
09:58:33 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:33 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 02:00:00) in space (linearNDFast)
09:58:33 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:33 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 01:00:00, weight 0.03) and
after (2025-06-17 02:00:00, weight 0.97) in time
09:58:33 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:33 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.486387153698146 and -59.24034485066113 degrees.
09:58:33 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.486387153698146 and -59.24034485066113 degrees.
09:58:33 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:33 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:33 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:33 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:33 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:33 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:33 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:33 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:33 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:33 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:33 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:33 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:33 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:33 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:33 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:33 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:33 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:33 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:33 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:33 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:33 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:33 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:33 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.123253 (min) 0.477253 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0720682 (min) 0.460756 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.411911 (min) -0.36373 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.63503 (min) 10.7679 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.584977 (min) 1.30479 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.1838 (min) 25.1171 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4866 (min) 14.0371 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.64 (min) 32.1868 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000379963 (min) 0.000173738 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:33 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:33 DEBUG opendrift:671: No elements hit coastline.
09:58:33 DEBUG opendrift:707: Lifting 326 elements to seafloor.
09:58:33 DEBUG opendrift:1720: No elements to deactivate
09:58:33 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:33 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:33 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:33 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
09:58:33 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:33 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.0840380634911919
09:58:33 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:33 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:33 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:33 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:33 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:33 DEBUG opendrift.models.oceandrift:524: 19 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 18 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:33 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:33 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:33 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:33 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 16 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 17 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:33 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:33 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:33 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:33 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:33 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:33 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:33 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:33 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(123), np.int64(0), np.int64(47), np.int64(330), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:33 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:33 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:33 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:33 DEBUG opendrift:2095: ======================================================================
09:58:33 INFO opendrift:2096: 2025-06-17 02:28:03.273845 - step 34 of 96 - 500 active elements (0 deactivated)
09:58:33 DEBUG opendrift:2102: 0 elements scheduled.
09:58:33 DEBUG opendrift:2104: ======================================================================
09:58:33 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.729178911966166
09:58:33 DEBUG opendrift:2115: 10.515141573822232 <- longitude -> 10.770333813932654
09:58:33 DEBUG opendrift:2115: -22.77287495425637 <- z -> -0.39277959084476965
09:58:33 DEBUG opendrift:2116: ---------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:33 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:33 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:33 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:33 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:33 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 02:00:00 (before)
2025-06-17 03:00:00 (after)
09:58:35 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:35 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:35 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:35 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:35 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:35 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:35 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 50x33x7) for time after (2025-06-17 03:00:00)
09:58:35 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 02:00:00) in space (linearNDFast)
09:58:35 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:35 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 03:00:00) in space (linearNDFast)
09:58:35 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:35 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 02:00:00, weight 0.53) and
after (2025-06-17 03:00:00, weight 0.47) in time
09:58:35 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:35 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48486952109209 and -59.22967721764883 degrees.
09:58:35 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48486952109209 and -59.22967721764883 degrees.
09:58:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:35 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:35 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:35 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:35 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:35 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:35 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:35 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:35 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:35 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:35 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.142315 (min) 0.469773 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0639244 (min) 0.445828 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.395771 (min) -0.352108 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.68901 (min) 9.93663 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.64713 (min) 1.39202 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.1486 (min) 26.0196 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4865 (min) 13.88 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.521 (min) 32.1837 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000325215 (min) 0.000207207 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:35 DEBUG opendrift:671: No elements hit coastline.
09:58:35 DEBUG opendrift:702: No elements hit seafloor.
09:58:35 DEBUG opendrift:1720: No elements to deactivate
09:58:35 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:35 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:35 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:35 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
09:58:35 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 2]
09:58:35 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 0]
09:58:35 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 353. 0.]
[ 0. 0. 0. 0. 0.]
[ 15. 0. 0. 44. 0.]
[ 11. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:35 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:35 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:35 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:35 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:35 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.07167884911290628
09:58:35 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:35 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:35 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:35 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
09:58:35 DEBUG opendrift:707: Lifting 2 elements to seafloor.
09:58:35 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:35 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:35 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 13 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:35 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:35 DEBUG opendrift.models.oceandrift:524: 15 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:35 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:35 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:35 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:35 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:35 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(122), np.int64(0), np.int64(44), np.int64(334), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:35 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:35 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:35 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:35 DEBUG opendrift:2095: ======================================================================
09:58:35 INFO opendrift:2096: 2025-06-17 02:58:03.273845 - step 35 of 96 - 500 active elements (0 deactivated)
09:58:35 DEBUG opendrift:2102: 0 elements scheduled.
09:58:35 DEBUG opendrift:2104: ======================================================================
09:58:35 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.73154828975433
09:58:35 DEBUG opendrift:2115: 10.515894211282598 <- longitude -> 10.783670037242393
09:58:35 DEBUG opendrift:2115: -22.534012032520398 <- z -> -0.660182554913592
09:58:35 DEBUG opendrift:2116: ---------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:35 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 02:00:00 (before)
2025-06-17 03:00:00 (after)
09:58:35 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 02:00:00) in space (linearNDFast)
09:58:35 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:35 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 03:00:00) in space (linearNDFast)
09:58:35 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:35 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 02:00:00, weight 0.03) and
after (2025-06-17 03:00:00, weight 0.97) in time
09:58:35 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:35 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.484116867818216 and -59.21634099099649 degrees.
09:58:35 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.484116867818216 and -59.21634099099649 degrees.
09:58:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:35 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:35 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:35 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:35 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:35 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:35 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:35 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:35 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:35 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:35 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.161359 (min) 0.461256 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.056236 (min) 0.398906 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.379873 (min) -0.339012 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.71671 (min) 9.15508 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.708052 (min) 1.50156 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.0631 (min) 27.2109 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4864 (min) 14.0095 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.6683 (min) 32.1846 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000290573 (min) 0.000239823 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:35 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:35 DEBUG opendrift:671: No elements hit coastline.
09:58:35 DEBUG opendrift:702: No elements hit seafloor.
09:58:35 DEBUG opendrift:1720: No elements to deactivate
09:58:35 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:35 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:35 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:35 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:58:35 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
09:58:35 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
09:58:35 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 354. 0.]
[ 0. 0. 0. 0. 0.]
[ 15. 0. 0. 46. 0.]
[ 11. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:35 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:35 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:35 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:35 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:35 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.06102934359155659
09:58:35 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:35 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:35 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:35 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:35 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:35 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:35 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:35 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:35 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:35 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:35 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:35 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:35 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:35 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:35 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:35 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(121), np.int64(0), np.int64(42), np.int64(337), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:35 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:35 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:35 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:35 DEBUG opendrift:2095: ======================================================================
09:58:35 INFO opendrift:2096: 2025-06-17 03:28:03.273845 - step 36 of 96 - 500 active elements (0 deactivated)
09:58:35 DEBUG opendrift:2102: 0 elements scheduled.
09:58:35 DEBUG opendrift:2104: ======================================================================
09:58:35 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.73305420542532
09:58:35 DEBUG opendrift:2115: 10.517779033070903 <- longitude -> 10.789719812928206
09:58:35 DEBUG opendrift:2115: -24.451043474974377 <- z -> -0.2627324095327357
09:58:35 DEBUG opendrift:2116: ---------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:35 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 03:00:00 (before)
2025-06-17 04:00:00 (after)
09:58:37 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:37 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:37 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:37 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:37 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:37 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:37 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 51x34x7) for time after (2025-06-17 04:00:00)
09:58:37 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 03:00:00) in space (linearNDFast)
09:58:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:37 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 04:00:00) in space (linearNDFast)
09:58:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:37 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 03:00:00, weight 0.53) and
after (2025-06-17 04:00:00, weight 0.47) in time
09:58:37 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48223205268969 and -59.21029120591304 degrees.
09:58:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48223205268969 and -59.21029120591304 degrees.
09:58:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:37 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:37 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:37 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:37 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.17016 (min) 0.466099 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0492431 (min) 0.356659 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.344525 (min) -0.303662 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.99516 (min) 8.60227 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.17961 (min) 2.00051 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.99708 (min) 28.3984 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4861 (min) 13.9997 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.5723 (min) 32.4421 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000314919 (min) 0.000253382 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:37 DEBUG opendrift:671: No elements hit coastline.
09:58:37 DEBUG opendrift:702: No elements hit seafloor.
09:58:37 DEBUG opendrift:1720: No elements to deactivate
09:58:37 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:37 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:37 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:37 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
09:58:37 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 2 0]
09:58:37 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0 3]
09:58:37 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 356. 0.]
[ 0. 0. 0. 0. 0.]
[ 16. 0. 0. 48. 0.]
[ 11. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:37 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:37 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:37 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:37 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:37 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.054482717084115985
09:58:37 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:37 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:37 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
09:58:37 DEBUG opendrift:707: Lifting 2 elements to seafloor.
09:58:37 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 11 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:37 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:37 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 14 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:37 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:37 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:37 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:37 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:37 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(120), np.int64(0), np.int64(40), np.int64(340), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:37 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:37 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:37 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:37 DEBUG opendrift:2095: ======================================================================
09:58:37 INFO opendrift:2096: 2025-06-17 03:58:03.273845 - step 37 of 96 - 500 active elements (0 deactivated)
09:58:37 DEBUG opendrift:2102: 0 elements scheduled.
09:58:37 DEBUG opendrift:2104: ======================================================================
09:58:37 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.733918479182165
09:58:37 DEBUG opendrift:2115: 10.519858091599358 <- longitude -> 10.803760540144186
09:58:37 DEBUG opendrift:2115: -24.38506491892755 <- z -> -0.3239261204315045
09:58:37 DEBUG opendrift:2116: ---------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:37 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 03:00:00 (before)
2025-06-17 04:00:00 (after)
09:58:37 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 03:00:00) in space (linearNDFast)
09:58:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:37 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 04:00:00) in space (linearNDFast)
09:58:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:37 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 03:00:00, weight 0.03) and
after (2025-06-17 04:00:00, weight 0.97) in time
09:58:37 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4801529809335 and -59.19625048396863 degrees.
09:58:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4801529809335 and -59.19625048396863 degrees.
09:58:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:37 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:37 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:37 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:37 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.178251 (min) 0.452629 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0223876 (min) 0.331511 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.30721 (min) -0.265511 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.26458 (min) 8.08311 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.54189 (min) 2.62935 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.94015 (min) 29.5377 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4858 (min) 13.9965 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.5687 (min) 32.3946 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000404235 (min) 0.00026562 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:37 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:37 DEBUG opendrift:671: No elements hit coastline.
09:58:37 DEBUG opendrift:702: No elements hit seafloor.
09:58:37 DEBUG opendrift:1720: No elements to deactivate
09:58:37 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:37 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:37 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:37 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
09:58:37 DEBUG opendrift.models.chemicaldrift:1476: old species: [2 0]
09:58:37 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3]
09:58:37 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 357. 0.]
[ 0. 0. 0. 0. 0.]
[ 17. 0. 0. 49. 0.]
[ 11. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:37 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:37 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:37 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:37 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:37 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.048935594916735506
09:58:37 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:37 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:37 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:37 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:37 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:37 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:37 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:37 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:37 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:37 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:37 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:37 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:37 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(120), np.int64(0), np.int64(37), np.int64(343), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:37 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:37 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:37 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:37 DEBUG opendrift:2095: ======================================================================
09:58:37 INFO opendrift:2096: 2025-06-17 04:28:03.273845 - step 38 of 96 - 500 active elements (0 deactivated)
09:58:37 DEBUG opendrift:2102: 0 elements scheduled.
09:58:37 DEBUG opendrift:2104: ======================================================================
09:58:37 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.734615309081114
09:58:37 DEBUG opendrift:2115: 10.52290018298153 <- longitude -> 10.817193395368092
09:58:37 DEBUG opendrift:2115: -25.80506706237793 <- z -> -0.36279217127227636
09:58:37 DEBUG opendrift:2116: ---------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:37 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 04:00:00 (before)
2025-06-17 05:00:00 (after)
09:58:39 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:39 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:39 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:39 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:39 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:39 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:39 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 52x34x7) for time after (2025-06-17 05:00:00)
09:58:39 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 04:00:00) in space (linearNDFast)
09:58:39 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:39 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 05:00:00) in space (linearNDFast)
09:58:39 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:39 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 04:00:00, weight 0.53) and
after (2025-06-17 05:00:00, weight 0.47) in time
09:58:39 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:39 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47711089232547 and -59.18281761259795 degrees.
09:58:39 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47711089232547 and -59.18281761259795 degrees.
09:58:39 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:39 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:39 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:39 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:39 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:39 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:39 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:39 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:39 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:39 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:39 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:39 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:39 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:39 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:39 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:39 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:39 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:39 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:39 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:39 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:39 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:39 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:39 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:39 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:39 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:39 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:39 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:39 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:39 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:39 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.177393 (min) 0.438262 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0443529 (min) 0.327094 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.260088 (min) -0.220773 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.42513 (min) 8.07264 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.91508 (min) 2.55854 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.93754 (min) 30.467 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4885 (min) 13.9888 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.721 (min) 32.2894 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000275229 (min) 0.000265861 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:39 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:39 DEBUG opendrift:671: No elements hit coastline.
09:58:39 DEBUG opendrift:702: No elements hit seafloor.
09:58:39 DEBUG opendrift:1720: No elements to deactivate
09:58:39 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:39 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:39 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:39 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
09:58:39 DEBUG opendrift.models.chemicaldrift:1476: old species: [2 3 3]
09:58:39 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 0 0]
09:58:39 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 357. 0.]
[ 0. 0. 0. 0. 0.]
[ 18. 0. 0. 51. 0.]
[ 13. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:39 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:39 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:39 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:39 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:40 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04975157547581605
09:58:40 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:40 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:40 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:40 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 12 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:40 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:40 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:40 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:40 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:40 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(123), np.int64(0), np.int64(36), np.int64(341), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:40 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:40 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:40 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:40 DEBUG opendrift:2095: ======================================================================
09:58:40 INFO opendrift:2096: 2025-06-17 04:58:03.273845 - step 39 of 96 - 500 active elements (0 deactivated)
09:58:40 DEBUG opendrift:2102: 0 elements scheduled.
09:58:40 DEBUG opendrift:2104: ======================================================================
09:58:40 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.73500571734889
09:58:40 DEBUG opendrift:2115: 10.524407914468316 <- longitude -> 10.830298407890885
09:58:40 DEBUG opendrift:2115: -25.80506706237793 <- z -> -0.37982878157684463
09:58:40 DEBUG opendrift:2116: ---------------------------------
09:58:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:40 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 04:00:00 (before)
2025-06-17 05:00:00 (after)
09:58:40 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 04:00:00) in space (linearNDFast)
09:58:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:40 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 05:00:00) in space (linearNDFast)
09:58:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:40 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 04:00:00, weight 0.03) and
after (2025-06-17 05:00:00, weight 0.97) in time
09:58:40 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47560316034507 and -59.16971260525086 degrees.
09:58:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47560316034507 and -59.16971260525086 degrees.
09:58:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:40 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:40 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:40 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:40 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:40 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:40 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:40 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.175915 (min) 0.431895 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0779855 (min) 0.301793 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.212886 (min) -0.176086 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.61354 (min) 8.19415 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.20766 (min) 2.48771 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.91056 (min) 31.2307 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.49 (min) 13.9035 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.896 (min) 32.3394 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000309432 (min) 0.000326322 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:40 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:40 DEBUG opendrift:671: No elements hit coastline.
09:58:40 DEBUG opendrift:702: No elements hit seafloor.
09:58:40 DEBUG opendrift:1720: No elements to deactivate
09:58:40 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:40 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:40 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:40 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
09:58:40 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 3]
09:58:40 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0]
09:58:40 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 358. 0.]
[ 0. 0. 0. 0. 0.]
[ 18. 0. 0. 51. 0.]
[ 14. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:40 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:40 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:40 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:40 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:40 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.05256385332352746
09:58:40 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:40 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:40 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:40 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:40 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:40 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 9 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 10 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:40 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:40 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:40 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:40 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:40 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:40 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(123), np.int64(0), np.int64(36), np.int64(341), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:40 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:40 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:40 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:40 DEBUG opendrift:2095: ======================================================================
09:58:40 INFO opendrift:2096: 2025-06-17 05:28:03.273845 - step 40 of 96 - 500 active elements (0 deactivated)
09:58:40 DEBUG opendrift:2102: 0 elements scheduled.
09:58:40 DEBUG opendrift:2104: ======================================================================
09:58:40 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.734875585299
09:58:40 DEBUG opendrift:2115: 10.526867588957115 <- longitude -> 10.841648571317574
09:58:40 DEBUG opendrift:2115: -29.020442878498898 <- z -> -0.08388001472605122
09:58:40 DEBUG opendrift:2116: ---------------------------------
09:58:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:40 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 05:00:00 (before)
2025-06-17 06:00:00 (after)
09:58:42 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:42 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:42 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:42 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:42 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:42 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:42 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 53x36x7) for time after (2025-06-17 06:00:00)
09:58:42 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 05:00:00) in space (linearNDFast)
09:58:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:42 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 06:00:00) in space (linearNDFast)
09:58:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:42 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 05:00:00, weight 0.53) and
after (2025-06-17 06:00:00, weight 0.47) in time
09:58:42 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47314349821325 and -59.15836244483356 degrees.
09:58:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47314349821325 and -59.15836244483356 degrees.
09:58:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:42 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:42 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:42 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:42 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:42 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:42 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.168367 (min) 0.40169 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0900251 (min) 0.247521 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.173826 (min) -0.143623 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.57825 (min) 7.13962 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.2384 (min) 2.50043 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.93002 (min) 31.6752 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4947 (min) 13.8651 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.9603 (min) 32.4559 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000332189 (min) 0.000410142 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:42 DEBUG opendrift:671: No elements hit coastline.
09:58:42 DEBUG opendrift:702: No elements hit seafloor.
09:58:42 DEBUG opendrift:1720: No elements to deactivate
09:58:42 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:42 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:42 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:42 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
09:58:42 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:42 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.04091678521383531
09:58:42 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:42 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:42 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:42 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:42 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:42 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:42 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:42 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:42 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(123), np.int64(0), np.int64(36), np.int64(341), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:42 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:42 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:42 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:42 DEBUG opendrift:2095: ======================================================================
09:58:42 INFO opendrift:2096: 2025-06-17 05:58:03.273845 - step 41 of 96 - 500 active elements (0 deactivated)
09:58:42 DEBUG opendrift:2102: 0 elements scheduled.
09:58:42 DEBUG opendrift:2104: ======================================================================
09:58:42 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.73414558080569
09:58:42 DEBUG opendrift:2115: 10.526867588957115 <- longitude -> 10.851021387349554
09:58:42 DEBUG opendrift:2115: -26.49559699206974 <- z -> 0.0
09:58:42 DEBUG opendrift:2116: ---------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:42 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 05:00:00 (before)
2025-06-17 06:00:00 (after)
09:58:42 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 05:00:00) in space (linearNDFast)
09:58:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:42 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 06:00:00) in space (linearNDFast)
09:58:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:42 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 05:00:00, weight 0.03) and
after (2025-06-17 06:00:00, weight 0.97) in time
09:58:42 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.14898962639005 degrees.
09:58:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.14898962639005 degrees.
09:58:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:42 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:42 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:42 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:42 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:42 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:42 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.160398 (min) 0.37818 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.131647 (min) 0.273589 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.135513 (min) -0.109667 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.24178 (min) 6.02265 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.19673 (min) 2.5969 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.9977 (min) 32.1195 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.4997 (min) 14.1516 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.5314 (min) 32.4746 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000232728 (min) 0.000545416 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:42 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:42 DEBUG opendrift:671: No elements hit coastline.
09:58:42 DEBUG opendrift:702: No elements hit seafloor.
09:58:42 DEBUG opendrift:1720: No elements to deactivate
09:58:42 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:42 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:42 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:42 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 7
09:58:42 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0 0 0]
09:58:42 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3 3 3]
09:58:42 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 365. 0.]
[ 0. 0. 0. 0. 0.]
[ 18. 0. 0. 51. 0.]
[ 14. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:42 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:42 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:42 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:42 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:42 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.03082099314274926
09:58:42 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:42 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:42 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:42 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:544: 7 elements reached seafloor, interacting with bottom
09:58:42 DEBUG opendrift:707: Lifting 7 elements to seafloor.
09:58:42 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:42 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:42 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:42 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:42 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:42 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:42 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(116), np.int64(0), np.int64(36), np.int64(348), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:42 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:42 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:42 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:42 DEBUG opendrift:2095: ======================================================================
09:58:42 INFO opendrift:2096: 2025-06-17 06:28:03.273845 - step 42 of 96 - 500 active elements (0 deactivated)
09:58:42 DEBUG opendrift:2102: 0 elements scheduled.
09:58:42 DEBUG opendrift:2104: ======================================================================
09:58:42 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.73259792642631
09:58:42 DEBUG opendrift:2115: 10.526867588957117 <- longitude -> 10.860728787186481
09:58:42 DEBUG opendrift:2115: -30.676061070549533 <- z -> 0.0
09:58:42 DEBUG opendrift:2116: ---------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:42 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 06:00:00 (before)
2025-06-17 07:00:00 (after)
09:58:44 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:44 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:44 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:44 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:44 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:44 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:44 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 53x37x7) for time after (2025-06-17 07:00:00)
09:58:44 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 06:00:00) in space (linearNDFast)
09:58:44 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:44 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 07:00:00) in space (linearNDFast)
09:58:44 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:44 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 06:00:00, weight 0.53) and
after (2025-06-17 07:00:00, weight 0.47) in time
09:58:44 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:44 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.13928222453963 degrees.
09:58:44 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.13928222453963 degrees.
09:58:44 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:44 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:44 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:44 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:44 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:44 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:44 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:44 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:44 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:44 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:44 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:44 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:44 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:44 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:44 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:44 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:44 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:44 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:44 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:44 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:44 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:44 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:44 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.155396 (min) 0.368906 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.142922 (min) 0.259106 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.117036 (min) -0.0917765 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: x_wind: 3.89655 (min) 4.84029 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.51517 (min) 3.2611 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.1045 (min) 32.1511 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.5047 (min) 14.1202 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.718 (min) 32.4818 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000188616 (min) 0.000517446 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:44 DEBUG opendrift:671: No elements hit coastline.
09:58:44 DEBUG opendrift:702: No elements hit seafloor.
09:58:44 DEBUG opendrift:1720: No elements to deactivate
09:58:44 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:44 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:44 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:44 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
09:58:44 DEBUG opendrift.models.chemicaldrift:1476: old species: [2 0 0]
09:58:44 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3 3]
09:58:44 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 367. 0.]
[ 0. 0. 0. 0. 0.]
[ 19. 0. 0. 51. 0.]
[ 14. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:44 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:44 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:44 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:44 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:44 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.02290990299900029
09:58:44 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:44 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:44 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:44 DEBUG opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
09:58:44 DEBUG opendrift:707: Lifting 2 elements to seafloor.
09:58:44 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:44 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:44 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:44 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:44 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:44 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(115), np.int64(0), np.int64(35), np.int64(350), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:44 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:44 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:44 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:44 DEBUG opendrift:2095: ======================================================================
09:58:44 INFO opendrift:2096: 2025-06-17 06:58:03.273845 - step 43 of 96 - 500 active elements (0 deactivated)
09:58:44 DEBUG opendrift:2102: 0 elements scheduled.
09:58:44 DEBUG opendrift:2104: ======================================================================
09:58:44 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.731800518210534
09:58:44 DEBUG opendrift:2115: 10.526867588957115 <- longitude -> 10.869076802012357
09:58:44 DEBUG opendrift:2115: -30.50379806230712 <- z -> -0.042722245480197096
09:58:44 DEBUG opendrift:2116: ---------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:44 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:44 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:44 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:44 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 06:00:00 (before)
2025-06-17 07:00:00 (after)
09:58:44 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 06:00:00) in space (linearNDFast)
09:58:44 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:44 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 07:00:00) in space (linearNDFast)
09:58:44 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:44 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 06:00:00, weight 0.03) and
after (2025-06-17 07:00:00, weight 0.97) in time
09:58:44 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:44 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.130934205659045 degrees.
09:58:44 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.130934205659045 degrees.
09:58:44 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:44 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:44 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:44 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:44 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:44 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:44 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:44 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:44 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:44 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:44 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:44 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:44 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:44 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:44 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:44 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:44 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:44 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:44 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:44 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:44 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:44 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:44 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.15194 (min) 0.327362 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.152226 (min) 0.243953 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.101966 (min) -0.0750003 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: x_wind: 2.83924 (min) 4.96751 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.86268 (min) 3.95772 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.2696 (min) 32.7248 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.5098 (min) 14.1275 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.7231 (min) 32.5739 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000329811 (min) 0.000579456 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:44 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:44 DEBUG opendrift:671: No elements hit coastline.
09:58:44 DEBUG opendrift:702: No elements hit seafloor.
09:58:44 DEBUG opendrift:1720: No elements to deactivate
09:58:44 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:44 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:44 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:44 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
09:58:44 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:44 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.02454669201802301
09:58:44 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:44 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:44 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:44 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:44 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:44 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:44 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:44 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:44 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:44 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:44 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:44 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:44 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(115), np.int64(0), np.int64(33), np.int64(352), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:44 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:44 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:44 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:44 DEBUG opendrift:2095: ======================================================================
09:58:44 INFO opendrift:2096: 2025-06-17 07:28:03.273845 - step 44 of 96 - 500 active elements (0 deactivated)
09:58:44 DEBUG opendrift:2102: 0 elements scheduled.
09:58:44 DEBUG opendrift:2104: ======================================================================
09:58:44 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.7323089097574
09:58:44 DEBUG opendrift:2115: 10.526867588957115 <- longitude -> 10.875972253528847
09:58:44 DEBUG opendrift:2115: -28.23096118774653 <- z -> 0.0
09:58:44 DEBUG opendrift:2116: ---------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:44 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:44 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:44 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:44 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:44 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 07:00:00 (before)
2025-06-17 08:00:00 (after)
09:58:46 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:46 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:46 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:46 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:46 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:46 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:46 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 54x38x7) for time after (2025-06-17 08:00:00)
09:58:46 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 07:00:00) in space (linearNDFast)
09:58:46 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:46 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 08:00:00) in space (linearNDFast)
09:58:46 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:46 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 07:00:00, weight 0.53) and
after (2025-06-17 08:00:00, weight 0.47) in time
09:58:46 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:46 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.12403876244949 degrees.
09:58:46 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.12403876244949 degrees.
09:58:46 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:46 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:46 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:46 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:46 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:46 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:46 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:46 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:46 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:46 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:46 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:46 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:46 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:46 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:46 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:46 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:46 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:46 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:46 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:46 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:46 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:46 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:46 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.143986 (min) 0.307795 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.155447 (min) 0.235658 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.098834 (min) -0.0697452 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: x_wind: 2.48756 (min) 4.72652 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: y_wind: 3.33172 (min) 4.60397 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.4949 (min) 33.1066 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.5152 (min) 14.1868 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.5805 (min) 32.6594 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000278932 (min) 0.000604819 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:46 DEBUG opendrift:671: No elements hit coastline.
09:58:46 DEBUG opendrift:702: No elements hit seafloor.
09:58:46 DEBUG opendrift:1720: No elements to deactivate
09:58:46 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:46 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:46 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:46 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:58:46 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
09:58:46 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
09:58:46 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 368. 0.]
[ 0. 0. 0. 0. 0.]
[ 19. 0. 0. 53. 0.]
[ 14. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:46 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:46 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:46 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:46 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:46 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.024578875670128696
09:58:46 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:46 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:46 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:46 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:46 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:46 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:46 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:46 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:46 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:46 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:46 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:46 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(114), np.int64(0), np.int64(33), np.int64(353), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:46 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:46 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:46 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:46 DEBUG opendrift:2095: ======================================================================
09:58:46 INFO opendrift:2096: 2025-06-17 07:58:03.273845 - step 45 of 96 - 500 active elements (0 deactivated)
09:58:46 DEBUG opendrift:2102: 0 elements scheduled.
09:58:46 DEBUG opendrift:2104: ======================================================================
09:58:46 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.73376685282762
09:58:46 DEBUG opendrift:2115: 10.526867588957119 <- longitude -> 10.882045618802554
09:58:46 DEBUG opendrift:2115: -32.28708718840217 <- z -> 0.0
09:58:46 DEBUG opendrift:2116: ---------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:46 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:46 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:46 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:46 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 07:00:00 (before)
2025-06-17 08:00:00 (after)
09:58:46 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 07:00:00) in space (linearNDFast)
09:58:46 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:46 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 08:00:00) in space (linearNDFast)
09:58:46 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:46 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 07:00:00, weight 0.03) and
after (2025-06-17 08:00:00, weight 0.97) in time
09:58:46 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:46 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.11796538781068 degrees.
09:58:46 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.11796538781068 degrees.
09:58:46 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:46 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:46 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:46 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:46 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:46 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:46 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:46 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:46 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:46 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:46 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:46 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:46 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:46 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:46 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:46 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:46 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:46 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:46 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:46 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:46 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:46 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:46 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:46 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.13572 (min) 0.291126 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.169536 (min) 0.202985 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0965857 (min) -0.065289 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: x_wind: 2.18593 (min) 4.47791 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: y_wind: 3.7185 (min) 5.27117 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 33.2865 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.5207 (min) 13.9129 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.0977 (min) 32.6467 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000181342 (min) 0.00053647 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:46 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:46 DEBUG opendrift:671: No elements hit coastline.
09:58:46 DEBUG opendrift:702: No elements hit seafloor.
09:58:47 DEBUG opendrift:1720: No elements to deactivate
09:58:47 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:47 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:47 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:47 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:58:47 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
09:58:47 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
09:58:47 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 369. 0.]
[ 0. 0. 0. 0. 0.]
[ 19. 0. 0. 53. 0.]
[ 14. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:47 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:47 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:47 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:47 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:47 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.024742175224354488
09:58:47 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:47 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:47 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:47 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:47 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:47 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:47 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:47 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:47 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:47 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:47 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:47 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:47 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:47 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(113), np.int64(0), np.int64(32), np.int64(355), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:47 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:47 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:47 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:47 DEBUG opendrift:2095: ======================================================================
09:58:47 INFO opendrift:2096: 2025-06-17 08:28:03.273845 - step 46 of 96 - 500 active elements (0 deactivated)
09:58:47 DEBUG opendrift:2102: 0 elements scheduled.
09:58:47 DEBUG opendrift:2104: ======================================================================
09:58:47 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.731728977842906
09:58:47 DEBUG opendrift:2115: 10.52686758895712 <- longitude -> 10.888353903879448
09:58:47 DEBUG opendrift:2115: -33.19490051269531 <- z -> 0.0
09:58:47 DEBUG opendrift:2116: ---------------------------------
09:58:47 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:47 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:47 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:47 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:47 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:47 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:47 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:47 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 08:00:00 (before)
2025-06-17 09:00:00 (after)
09:58:48 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:48 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:48 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:48 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:48 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:48 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:48 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 54x38x7) for time after (2025-06-17 09:00:00)
09:58:48 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 08:00:00) in space (linearNDFast)
09:58:48 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:48 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 09:00:00) in space (linearNDFast)
09:58:48 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:48 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 08:00:00, weight 0.53) and
after (2025-06-17 09:00:00, weight 0.47) in time
09:58:48 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:48 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.111657091441955 degrees.
09:58:48 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.111657091441955 degrees.
09:58:48 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:48 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:48 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:48 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:48 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:48 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:48 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:48 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:48 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:48 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:48 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:48 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:48 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:48 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:48 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:48 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:48 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:48 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:48 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:48 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:48 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:48 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:48 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.126288 (min) 0.291523 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.18416 (min) 0.208919 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.102653 (min) -0.0686387 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.79246 (min) 5.22582 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: y_wind: 3.76994 (min) 5.40557 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 33.2865 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.5304 (min) 14.1286 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.8035 (min) 32.5793 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -4.98603e-05 (min) 0.000505027 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:48 DEBUG opendrift:671: No elements hit coastline.
09:58:48 DEBUG opendrift:707: Lifting 3 elements to seafloor.
09:58:48 DEBUG opendrift:1720: No elements to deactivate
09:58:48 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:48 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:48 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:48 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
09:58:48 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0]
09:58:48 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3]
09:58:48 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 373. 0.]
[ 0. 0. 0. 0. 0.]
[ 19. 0. 0. 54. 0.]
[ 14. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:48 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:48 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:48 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:48 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:48 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.030092966875563062
09:58:48 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:48 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:48 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:48 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:544: 4 elements reached seafloor, interacting with bottom
09:58:48 DEBUG opendrift:707: Lifting 4 elements to seafloor.
09:58:48 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:48 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:48 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:48 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:48 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:48 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(109), np.int64(0), np.int64(32), np.int64(359), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:48 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:48 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:48 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:48 DEBUG opendrift:2095: ======================================================================
09:58:48 INFO opendrift:2096: 2025-06-17 08:58:03.273845 - step 47 of 96 - 500 active elements (0 deactivated)
09:58:48 DEBUG opendrift:2102: 0 elements scheduled.
09:58:48 DEBUG opendrift:2104: ======================================================================
09:58:48 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.733553908153034
09:58:48 DEBUG opendrift:2115: 10.52686758895712 <- longitude -> 10.894259076098022
09:58:48 DEBUG opendrift:2115: -33.187747955322266 <- z -> 0.0
09:58:48 DEBUG opendrift:2116: ---------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:48 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:48 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:48 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:48 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 08:00:00 (before)
2025-06-17 09:00:00 (after)
09:58:48 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 08:00:00) in space (linearNDFast)
09:58:48 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:48 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 09:00:00) in space (linearNDFast)
09:58:48 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:48 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 08:00:00, weight 0.03) and
after (2025-06-17 09:00:00, weight 0.97) in time
09:58:48 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:48 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.1057519227999 degrees.
09:58:48 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.1057519227999 degrees.
09:58:48 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:48 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:48 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:48 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:48 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:48 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:48 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:48 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:48 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:48 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:48 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:48 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:48 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:48 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:48 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:48 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:48 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:48 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:48 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:48 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:48 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:48 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:48 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.116774 (min) 0.300876 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.174199 (min) 0.226977 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.110073 (min) -0.0719323 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.37013 (min) 6.04283 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: y_wind: 3.71487 (min) 5.50988 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 33.6266 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.5404 (min) 14.155 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.3228 (min) 32.6734 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -2.52638e-05 (min) 0.000492943 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:48 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:48 DEBUG opendrift:671: No elements hit coastline.
09:58:48 DEBUG opendrift:707: Lifting 8 elements to seafloor.
09:58:48 DEBUG opendrift:1720: No elements to deactivate
09:58:48 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:48 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:48 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:48 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:58:48 DEBUG opendrift.models.chemicaldrift:1476: old species: [3]
09:58:48 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
09:58:48 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 373. 0.]
[ 0. 0. 0. 0. 0.]
[ 19. 0. 0. 54. 0.]
[ 15. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:48 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:48 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:48 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:48 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:48 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.03673211608712101
09:58:48 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:48 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:48 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:48 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:48 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:48 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:48 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:48 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:48 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:48 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:48 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:48 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(110), np.int64(0), np.int64(31), np.int64(359), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:48 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:48 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:48 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:48 DEBUG opendrift:2095: ======================================================================
09:58:48 INFO opendrift:2096: 2025-06-17 09:28:03.273845 - step 48 of 96 - 500 active elements (0 deactivated)
09:58:48 DEBUG opendrift:2102: 0 elements scheduled.
09:58:48 DEBUG opendrift:2104: ======================================================================
09:58:48 DEBUG opendrift:2115: 57.5457777755823 <- latitude -> 57.73550652546776
09:58:48 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.900111696117165
09:58:48 DEBUG opendrift:2115: -33.17998504638672 <- z -> -0.09679667913574042
09:58:48 DEBUG opendrift:2116: ---------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:48 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:48 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:48 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:48 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:48 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 09:00:00 (before)
2025-06-17 10:00:00 (after)
09:58:50 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:50 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:50 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:50 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:50 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:50 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:50 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 55x40x7) for time after (2025-06-17 10:00:00)
09:58:50 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 09:00:00) in space (linearNDFast)
09:58:50 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:50 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 10:00:00) in space (linearNDFast)
09:58:50 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:50 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 09:00:00, weight 0.53) and
after (2025-06-17 10:00:00, weight 0.47) in time
09:58:50 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:50 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.09989931338707 degrees.
09:58:50 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.09989931338707 degrees.
09:58:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:50 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:50 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:50 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:50 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:50 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:50 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:50 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:50 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:50 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:50 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:50 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:50 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.111841 (min) 0.316535 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.140734 (min) 0.234115 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.127166 (min) -0.0871083 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.8445 (min) 7.59781 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.66175 (min) 5.50553 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 34.5438 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.5504 (min) 14.0423 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.8758 (min) 32.6922 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -3.12054e-05 (min) 0.000418531 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:50 DEBUG opendrift:671: No elements hit coastline.
09:58:50 DEBUG opendrift:707: Lifting 12 elements to seafloor.
09:58:50 DEBUG opendrift:1720: No elements to deactivate
09:58:50 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:50 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:50 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:50 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
09:58:50 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0]
09:58:50 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3]
09:58:50 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 377. 0.]
[ 0. 0. 0. 0. 0.]
[ 19. 0. 0. 55. 0.]
[ 15. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:50 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:50 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:50 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:50 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:50 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.05083456454836225
09:58:50 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:50 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:50 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:544: 4 elements reached seafloor, interacting with bottom
09:58:50 DEBUG opendrift:707: Lifting 4 elements to seafloor.
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:50 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:50 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:50 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:50 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:50 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:50 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:50 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:50 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(106), np.int64(0), np.int64(28), np.int64(366), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:50 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:50 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:50 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:50 DEBUG opendrift:2095: ======================================================================
09:58:50 INFO opendrift:2096: 2025-06-17 09:58:03.273845 - step 49 of 96 - 500 active elements (0 deactivated)
09:58:50 DEBUG opendrift:2102: 0 elements scheduled.
09:58:50 DEBUG opendrift:2104: ======================================================================
09:58:50 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.73677429881999
09:58:50 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.905659173670463
09:58:50 DEBUG opendrift:2115: -33.16337203979492 <- z -> 0.0
09:58:50 DEBUG opendrift:2116: ---------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:50 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 09:00:00 (before)
2025-06-17 10:00:00 (after)
09:58:50 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 09:00:00) in space (linearNDFast)
09:58:50 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:50 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 10:00:00) in space (linearNDFast)
09:58:50 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:50 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 09:00:00, weight 0.03) and
after (2025-06-17 10:00:00, weight 0.97) in time
09:58:50 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:50 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.09435181810625 degrees.
09:58:50 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.09435181810625 degrees.
09:58:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:50 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:50 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:50 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:50 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:50 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:50 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:50 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:50 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:50 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:50 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:50 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:50 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.115097 (min) 0.349633 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.142988 (min) 0.259666 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.144761 (min) -0.103108 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: x_wind: 2.30308 (min) 9.20396 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.33079 (min) 5.59206 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 35.1448 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.5604 (min) 14.2685 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.4288 (min) 32.7433 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -4.40963e-05 (min) 0.000444747 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:50 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:50 DEBUG opendrift:671: No elements hit coastline.
09:58:50 DEBUG opendrift:707: Lifting 24 elements to seafloor.
09:58:50 DEBUG opendrift:1720: No elements to deactivate
09:58:50 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:50 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:50 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:50 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
09:58:50 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0]
09:58:50 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3]
09:58:50 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 380. 0.]
[ 0. 0. 0. 0. 0.]
[ 19. 0. 0. 58. 0.]
[ 15. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:50 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:50 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:50 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:50 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:50 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.06911167681928539
09:58:50 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:50 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:50 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:544: 3 elements reached seafloor, interacting with bottom
09:58:50 DEBUG opendrift:707: Lifting 3 elements to seafloor.
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:50 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:50 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:50 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:50 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:50 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:50 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(103), np.int64(0), np.int64(28), np.int64(369), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:50 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:50 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:50 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:50 DEBUG opendrift:2095: ======================================================================
09:58:50 INFO opendrift:2096: 2025-06-17 10:28:03.273845 - step 50 of 96 - 500 active elements (0 deactivated)
09:58:50 DEBUG opendrift:2102: 0 elements scheduled.
09:58:50 DEBUG opendrift:2104: ======================================================================
09:58:50 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.738616511845535
09:58:50 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.910957698164665
09:58:50 DEBUG opendrift:2115: -33.14615249633789 <- z -> -0.04146803174811642
09:58:50 DEBUG opendrift:2116: ---------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:50 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 10:00:00 (before)
2025-06-17 11:00:00 (after)
09:58:52 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:52 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:52 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:52 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:52 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:52 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:52 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 56x40x7) for time after (2025-06-17 11:00:00)
09:58:52 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 10:00:00) in space (linearNDFast)
09:58:52 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:52 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 11:00:00) in space (linearNDFast)
09:58:52 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:52 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 10:00:00, weight 0.53) and
after (2025-06-17 11:00:00, weight 0.47) in time
09:58:52 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:52 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.08905331398765 degrees.
09:58:52 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.08905331398765 degrees.
09:58:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:52 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:52 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:52 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:52 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:52 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:52 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:52 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:52 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:52 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:52 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:52 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:52 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:52 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:52 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.129182 (min) 0.388976 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.138022 (min) 0.253581 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.171315 (min) -0.129423 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.63797 (min) 9.38292 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.140408 (min) 2.75124 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 35.9611 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.5746 (min) 14.297 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.1108 (min) 32.8012 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -4.30782e-05 (min) 0.00039351 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:52 DEBUG opendrift:671: No elements hit coastline.
09:58:52 DEBUG opendrift:707: Lifting 29 elements to seafloor.
09:58:52 DEBUG opendrift:1720: No elements to deactivate
09:58:52 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:52 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:52 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:52 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
09:58:52 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:52 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.06903169077034875
09:58:52 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:52 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:52 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:52 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:52 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:52 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:52 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:52 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:52 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(103), np.int64(0), np.int64(27), np.int64(370), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:52 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:52 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:52 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:52 DEBUG opendrift:2095: ======================================================================
09:58:52 INFO opendrift:2096: 2025-06-17 10:58:03.273845 - step 51 of 96 - 500 active elements (0 deactivated)
09:58:52 DEBUG opendrift:2102: 0 elements scheduled.
09:58:52 DEBUG opendrift:2104: ======================================================================
09:58:52 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.7406885755088
09:58:52 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.915848158194338
09:58:52 DEBUG opendrift:2115: -33.12046813964844 <- z -> -0.07831441694233288
09:58:52 DEBUG opendrift:2116: ---------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:52 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:52 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 10:00:00 (before)
2025-06-17 11:00:00 (after)
09:58:52 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 10:00:00) in space (linearNDFast)
09:58:52 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:52 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 11:00:00) in space (linearNDFast)
09:58:52 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:52 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 10:00:00, weight 0.03) and
after (2025-06-17 11:00:00, weight 0.97) in time
09:58:52 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:52 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.08416283082792 degrees.
09:58:52 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.08416283082792 degrees.
09:58:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:52 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:52 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:52 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:52 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:52 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:52 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:52 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:52 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:52 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:52 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:52 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:52 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:52 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:52 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.173402 (min) 0.401394 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.12943 (min) 0.237395 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.198442 (min) -0.156453 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.71749 (min) 9.61901 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.659895 (min) 2.17052 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 36.8188 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.5891 (min) 14.32 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.4764 (min) 32.9067 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -9.33449e-05 (min) 0.000408697 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:52 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:52 DEBUG opendrift:671: No elements hit coastline.
09:58:52 DEBUG opendrift:707: Lifting 30 elements to seafloor.
09:58:52 DEBUG opendrift:1720: No elements to deactivate
09:58:52 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:52 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:52 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:52 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
09:58:52 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0]
09:58:52 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3]
09:58:52 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 383. 0.]
[ 0. 0. 0. 0. 0.]
[ 19. 0. 0. 59. 0.]
[ 15. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:52 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:52 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:52 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:52 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:52 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.06958127711559797
09:58:52 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:52 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:52 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:52 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:544: 3 elements reached seafloor, interacting with bottom
09:58:52 DEBUG opendrift:707: Lifting 3 elements to seafloor.
09:58:52 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:52 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:52 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:52 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:52 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:52 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:52 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:52 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:52 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(100), np.int64(0), np.int64(26), np.int64(374), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:52 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:52 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:52 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:52 DEBUG opendrift:2095: ======================================================================
09:58:52 INFO opendrift:2096: 2025-06-17 11:28:03.273845 - step 52 of 96 - 500 active elements (0 deactivated)
09:58:52 DEBUG opendrift:2102: 0 elements scheduled.
09:58:52 DEBUG opendrift:2104: ======================================================================
09:58:52 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.7394120341697
09:58:52 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.92017257137291
09:58:52 DEBUG opendrift:2115: -33.2712357242912 <- z -> -0.1046132073125991
09:58:52 DEBUG opendrift:2116: ---------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:52 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:52 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 11:00:00 (before)
2025-06-17 12:00:00 (after)
09:58:55 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:55 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:55 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:55 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:55 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:55 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:55 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 56x41x7) for time after (2025-06-17 12:00:00)
09:58:55 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 11:00:00) in space (linearNDFast)
09:58:55 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:55 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 12:00:00) in space (linearNDFast)
09:58:55 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:55 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 11:00:00, weight 0.53) and
after (2025-06-17 12:00:00, weight 0.47) in time
09:58:55 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:55 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.07983843270841 degrees.
09:58:55 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.07983843270841 degrees.
09:58:55 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:55 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:55 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:55 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:55 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:55 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:55 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:55 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:55 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:55 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:55 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:55 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:55 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:55 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:55 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:55 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:55 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:55 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:55 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:55 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:55 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:55 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:55 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.164831 (min) 0.424829 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.112119 (min) 0.215088 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.2343 (min) -0.191444 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.07402 (min) 9.84731 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.435917 (min) 2.04024 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 36.5348 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.5998 (min) 14.2037 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.6388 (min) 33.0584 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000170423 (min) 0.000337867 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:55 DEBUG opendrift:671: No elements hit coastline.
09:58:55 DEBUG opendrift:707: Lifting 35 elements to seafloor.
09:58:55 DEBUG opendrift:1720: No elements to deactivate
09:58:55 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:55 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:55 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:55 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:58:55 DEBUG opendrift.models.chemicaldrift:1476: old species: [2]
09:58:55 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
09:58:55 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 383. 0.]
[ 0. 0. 0. 0. 0.]
[ 20. 0. 0. 60. 0.]
[ 15. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:55 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:55 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:55 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:55 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:55 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.0721957151764842
09:58:55 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:55 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:55 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:55 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:55 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:55 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:55 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:55 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:55 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(101), np.int64(0), np.int64(25), np.int64(374), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:55 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:55 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:55 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:55 DEBUG opendrift:2095: ======================================================================
09:58:55 INFO opendrift:2096: 2025-06-17 11:58:03.273845 - step 53 of 96 - 500 active elements (0 deactivated)
09:58:55 DEBUG opendrift:2102: 0 elements scheduled.
09:58:55 DEBUG opendrift:2104: ======================================================================
09:58:55 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.73952099963535
09:58:55 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.92373495023722
09:58:55 DEBUG opendrift:2115: -33.06116485595703 <- z -> 0.0
09:58:55 DEBUG opendrift:2116: ---------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:55 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:55 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:55 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:55 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 11:00:00 (before)
2025-06-17 12:00:00 (after)
09:58:55 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 11:00:00) in space (linearNDFast)
09:58:55 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:55 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 12:00:00) in space (linearNDFast)
09:58:55 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:55 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 11:00:00, weight 0.03) and
after (2025-06-17 12:00:00, weight 0.97) in time
09:58:55 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:55 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.07627605093572 degrees.
09:58:55 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.07627605093572 degrees.
09:58:55 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:55 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:55 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:55 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:55 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:55 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:55 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:55 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:55 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:55 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:55 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:55 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:55 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:55 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:55 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:55 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:55 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:55 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:55 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:55 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:55 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:55 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:55 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.188288 (min) 0.424532 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0950802 (min) 0.235361 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.271727 (min) -0.226987 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.44642 (min) 10.1983 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.190211 (min) 2.03982 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 36.1574 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6103 (min) 14.2074 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.8941 (min) 33.1558 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00016283 (min) 0.000357997 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:55 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:55 DEBUG opendrift:671: No elements hit coastline.
09:58:55 DEBUG opendrift:707: Lifting 35 elements to seafloor.
09:58:55 DEBUG opendrift:1720: No elements to deactivate
09:58:55 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:55 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:55 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:55 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
09:58:55 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:55 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.07816635457623085
09:58:55 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:55 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:55 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:55 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:55 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:55 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:55 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:55 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:55 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:55 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:55 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:55 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(101), np.int64(0), np.int64(24), np.int64(375), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:55 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:55 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:55 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:55 DEBUG opendrift:2095: ======================================================================
09:58:55 INFO opendrift:2096: 2025-06-17 12:28:03.273845 - step 54 of 96 - 500 active elements (0 deactivated)
09:58:55 DEBUG opendrift:2102: 0 elements scheduled.
09:58:55 DEBUG opendrift:2104: ======================================================================
09:58:55 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.73863320018529
09:58:55 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.926537343604592
09:58:55 DEBUG opendrift:2115: -33.02765655517578 <- z -> -0.11345340775246737
09:58:55 DEBUG opendrift:2116: ---------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:55 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:55 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:55 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:55 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:55 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 12:00:00 (before)
2025-06-17 13:00:00 (after)
09:58:56 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:56 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:56 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:56 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:56 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:56 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:56 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 56x41x7) for time after (2025-06-17 13:00:00)
09:58:56 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 12:00:00) in space (linearNDFast)
09:58:56 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:56 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 13:00:00) in space (linearNDFast)
09:58:56 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:56 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 12:00:00, weight 0.53) and
after (2025-06-17 13:00:00, weight 0.47) in time
09:58:56 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:56 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.07347365212691 degrees.
09:58:56 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.07347365212691 degrees.
09:58:56 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:56 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:56 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:56 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:56 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:56 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:56 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:56 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:56 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:56 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:56 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:56 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:56 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:56 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:56 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:56 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:56 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:56 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:56 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:56 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:56 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:56 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:56 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:56 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:56 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:56 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:56 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:56 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:56 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:56 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.194406 (min) 0.417795 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0738784 (min) 0.251836 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.305655 (min) -0.260812 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.00758 (min) 9.58905 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.155636 (min) 2.12971 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 35.7952 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6157 (min) 14.1563 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.8688 (min) 33.1518 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000158473 (min) 0.000369885 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:56 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:56 DEBUG opendrift:671: No elements hit coastline.
09:58:56 DEBUG opendrift:707: Lifting 39 elements to seafloor.
09:58:57 DEBUG opendrift:1720: No elements to deactivate
09:58:57 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:57 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:57 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:57 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
09:58:57 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 2 0]
09:58:57 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0 3]
09:58:57 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 385. 0.]
[ 0. 0. 0. 0. 0.]
[ 21. 0. 0. 61. 0.]
[ 15. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:57 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:57 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:57 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:57 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:57 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.06972645659584038
09:58:57 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:57 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:57 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:57 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
09:58:57 DEBUG opendrift:707: Lifting 2 elements to seafloor.
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
09:58:57 DEBUG opendrift:707: Lifting 2 elements to seafloor.
09:58:57 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:57 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:57 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:57 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:57 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:57 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(100), np.int64(0), np.int64(21), np.int64(379), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:57 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:57 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:57 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:57 DEBUG opendrift:2095: ======================================================================
09:58:57 INFO opendrift:2096: 2025-06-17 12:58:03.273845 - step 55 of 96 - 500 active elements (0 deactivated)
09:58:57 DEBUG opendrift:2102: 0 elements scheduled.
09:58:57 DEBUG opendrift:2104: ======================================================================
09:58:57 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.738277520360185
09:58:57 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.935961853778283
09:58:57 DEBUG opendrift:2115: -32.996490478515625 <- z -> 0.0
09:58:57 DEBUG opendrift:2116: ---------------------------------
09:58:57 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:57 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:57 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:57 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:57 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:57 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:57 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:57 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 12:00:00 (before)
2025-06-17 13:00:00 (after)
09:58:57 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 12:00:00) in space (linearNDFast)
09:58:57 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:57 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 13:00:00) in space (linearNDFast)
09:58:57 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:57 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 12:00:00, weight 0.03) and
after (2025-06-17 13:00:00, weight 0.97) in time
09:58:57 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:57 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.06404915408778 degrees.
09:58:57 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.06404915408778 degrees.
09:58:57 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:57 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:57 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:57 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:57 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:57 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:57 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:57 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:57 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:57 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:57 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:57 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:57 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:57 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:57 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:57 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:57 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:57 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:57 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:57 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:57 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:57 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:57 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:57 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:57 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:57 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:57 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:57 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:57 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:57 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.21539 (min) 0.426566 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0632371 (min) 0.260801 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.336972 (min) -0.294519 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.56184 (min) 8.84731 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.504073 (min) 2.22416 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 35.4607 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6207 (min) 14.1575 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.7594 (min) 33.0513 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000195232 (min) 0.000305191 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:57 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:57 DEBUG opendrift:671: No elements hit coastline.
09:58:57 DEBUG opendrift:707: Lifting 44 elements to seafloor.
09:58:57 DEBUG opendrift:1720: No elements to deactivate
09:58:57 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:57 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:57 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:57 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:58:57 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
09:58:57 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
09:58:57 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 386. 0.]
[ 0. 0. 0. 0. 0.]
[ 21. 0. 0. 63. 0.]
[ 15. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:57 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:57 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:57 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:57 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:57 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.059769655112703955
09:58:57 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:57 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:57 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:57 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:57 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:57 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:57 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:57 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:57 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:57 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:57 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:57 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(99), np.int64(0), np.int64(20), np.int64(381), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:57 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:57 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:57 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:57 DEBUG opendrift:2095: ======================================================================
09:58:57 INFO opendrift:2096: 2025-06-17 13:28:03.273845 - step 56 of 96 - 500 active elements (0 deactivated)
09:58:57 DEBUG opendrift:2102: 0 elements scheduled.
09:58:57 DEBUG opendrift:2104: ======================================================================
09:58:57 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.739697298952656
09:58:57 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.938332222382673
09:58:57 DEBUG opendrift:2115: -32.965492248535156 <- z -> -0.26363375058507565
09:58:57 DEBUG opendrift:2116: ---------------------------------
09:58:57 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:57 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:57 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:57 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:57 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:57 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:57 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:57 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 13:00:00 (before)
2025-06-17 14:00:00 (after)
09:58:58 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:58:58 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:58:58 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:58:58 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:58:58 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:58:58 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:58:58 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 57x41x7) for time after (2025-06-17 14:00:00)
09:58:58 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 13:00:00) in space (linearNDFast)
09:58:58 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:58 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 14:00:00) in space (linearNDFast)
09:58:58 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:58 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 13:00:00, weight 0.53) and
after (2025-06-17 14:00:00, weight 0.47) in time
09:58:58 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:58 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.061678773275545 degrees.
09:58:58 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.061678773275545 degrees.
09:58:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:58 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:58 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:58 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:58 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:58 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:58 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:58 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:58 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:58 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:58 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:58 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:58 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:58 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.226659 (min) 0.436772 (max)
09:58:58 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.107354 (min) 0.265921 (max)
09:58:58 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.351815 (min) -0.313372 (max)
09:58:58 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.31185 (min) 9.1957 (max)
09:58:58 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.546815 (min) 2.20642 (max)
09:58:58 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:58 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 36.2423 (max)
09:58:58 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6288 (min) 14.1726 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.8364 (min) 33.0435 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000171246 (min) 0.000294524 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:59 DEBUG opendrift:671: No elements hit coastline.
09:58:59 DEBUG opendrift:707: Lifting 49 elements to seafloor.
09:58:59 DEBUG opendrift:1720: No elements to deactivate
09:58:59 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:59 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:59 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:59 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
09:58:59 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 3 0 0]
09:58:59 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 0 3 3]
09:58:59 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 388. 0.]
[ 0. 0. 0. 0. 0.]
[ 21. 0. 0. 64. 0.]
[ 17. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:59 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:59 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:59 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:59 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:59 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.06421651367816646
09:58:59 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:59 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:59 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:59 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
09:58:59 DEBUG opendrift:707: Lifting 2 elements to seafloor.
09:58:59 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:59 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:59 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:59 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:59 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:59 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:59 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:59 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:59 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:59 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(99), np.int64(0), np.int64(18), np.int64(383), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:59 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:59 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:59 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:59 DEBUG opendrift:2095: ======================================================================
09:58:59 INFO opendrift:2096: 2025-06-17 13:58:03.273845 - step 57 of 96 - 500 active elements (0 deactivated)
09:58:59 DEBUG opendrift:2102: 0 elements scheduled.
09:58:59 DEBUG opendrift:2104: ======================================================================
09:58:59 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.740894674489844
09:58:59 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.93773599879225
09:58:59 DEBUG opendrift:2115: -32.9499397277832 <- z -> -0.41426627367148794
09:58:59 DEBUG opendrift:2116: ---------------------------------
09:58:59 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:59 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:59 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:59 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:59 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:59 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:59 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:59 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 13:00:00 (before)
2025-06-17 14:00:00 (after)
09:58:59 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 13:00:00) in space (linearNDFast)
09:58:59 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:59 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 14:00:00) in space (linearNDFast)
09:58:59 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:58:59 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 13:00:00, weight 0.03) and
after (2025-06-17 14:00:00, weight 0.97) in time
09:58:59 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:58:59 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.062275006395986 degrees.
09:58:59 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.062275006395986 degrees.
09:58:59 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:59 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:59 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:58:59 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:59 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:58:59 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:59 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:59 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:58:59 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:59 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:59 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:59 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:59 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:58:59 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:59 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:58:59 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:59 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:59 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:58:59 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:58:59 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:58:59 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:58:59 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:58:59 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:58:59 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:58:59 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:58:59 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:58:59 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:58:59 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:58:59 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:58:59 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.230048 (min) 0.435671 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.137512 (min) 0.267795 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.367655 (min) -0.331126 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.99234 (min) 9.62279 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.430586 (min) 2.2402 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 36.8203 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6359 (min) 14.6981 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 27.764 (min) 33.1842 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000165675 (min) 0.000306722 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:58:59 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:58:59 DEBUG opendrift:671: No elements hit coastline.
09:58:59 DEBUG opendrift:707: Lifting 52 elements to seafloor.
09:58:59 DEBUG opendrift:1720: No elements to deactivate
09:58:59 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:58:59 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:58:59 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:58:59 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:58:59 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
09:58:59 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
09:58:59 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 389. 0.]
[ 0. 0. 0. 0. 0.]
[ 21. 0. 0. 66. 0.]
[ 17. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:58:59 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:59 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:59 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:58:59 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:58:59 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.07001010768675517
09:58:59 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:58:59 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:58:59 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:58:59 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:59 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:59 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:58:59 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:58:59 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:58:59 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:58:59 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:58:59 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:58:59 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:58:59 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:58:59 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(98), np.int64(0), np.int64(17), np.int64(385), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:58:59 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:58:59 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:58:59 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:58:59 DEBUG opendrift:2095: ======================================================================
09:58:59 INFO opendrift:2096: 2025-06-17 14:28:03.273845 - step 58 of 96 - 500 active elements (0 deactivated)
09:58:59 DEBUG opendrift:2102: 0 elements scheduled.
09:58:59 DEBUG opendrift:2104: ======================================================================
09:58:59 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.741757117854974
09:58:59 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.948196155534493
09:58:59 DEBUG opendrift:2115: -32.935462951660156 <- z -> -0.8094375557257785
09:58:59 DEBUG opendrift:2116: ---------------------------------
09:58:59 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:58:59 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:58:59 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:58:59 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:58:59 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:58:59 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:58:59 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:58:59 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 14:00:00 (before)
2025-06-17 15:00:00 (after)
09:59:00 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:00 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:00 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:00 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:00 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:00 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:00 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 57x41x7) for time after (2025-06-17 15:00:00)
09:59:00 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 14:00:00) in space (linearNDFast)
09:59:00 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:00 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 15:00:00) in space (linearNDFast)
09:59:00 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:00 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 14:00:00, weight 0.53) and
after (2025-06-17 15:00:00, weight 0.47) in time
09:59:00 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:00 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.05181484129245 degrees.
09:59:00 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.05181484129245 degrees.
09:59:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:00 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:00 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:00 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:00 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:00 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:00 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:00 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:00 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:00 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:00 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:00 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:00 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:00 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.227655 (min) 0.418544 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.115393 (min) 0.261412 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.358271 (min) -0.321963 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.05586 (min) 10.0508 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.0641432 (min) 1.95817 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 37.2602 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6437 (min) 14.5778 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.0865 (min) 33.0826 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000241838 (min) 0.00028917 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:00 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:00 DEBUG opendrift:671: No elements hit coastline.
09:59:00 DEBUG opendrift:702: No elements hit seafloor.
09:59:00 DEBUG opendrift:1720: No elements to deactivate
09:59:00 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:00 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:00 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:00 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
09:59:00 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:00 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.07511829864358899
09:59:00 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:00 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:00 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:01 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:01 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:01 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:01 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:01 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:01 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(98), np.int64(0), np.int64(17), np.int64(385), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:01 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:01 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:01 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:01 DEBUG opendrift:2095: ======================================================================
09:59:01 INFO opendrift:2096: 2025-06-17 14:58:03.273845 - step 59 of 96 - 500 active elements (0 deactivated)
09:59:01 DEBUG opendrift:2102: 0 elements scheduled.
09:59:01 DEBUG opendrift:2104: ======================================================================
09:59:01 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.74412434507676
09:59:01 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.950956068032289
09:59:01 DEBUG opendrift:2115: -32.935462951660156 <- z -> 0.0
09:59:01 DEBUG opendrift:2116: ---------------------------------
09:59:01 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:01 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:01 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:01 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:01 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:01 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:01 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:01 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 14:00:00 (before)
2025-06-17 15:00:00 (after)
09:59:01 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 14:00:00) in space (linearNDFast)
09:59:01 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:01 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 15:00:00) in space (linearNDFast)
09:59:01 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:01 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 14:00:00, weight 0.03) and
after (2025-06-17 15:00:00, weight 0.97) in time
09:59:01 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:01 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04905493459671 degrees.
09:59:01 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04905493459671 degrees.
09:59:01 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:01 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:01 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:01 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:01 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:01 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:01 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:01 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:01 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:01 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:01 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:01 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:01 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:01 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:01 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:01 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:01 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:01 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:01 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:01 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:01 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:01 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:01 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:01 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:01 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:01 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:01 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:01 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:01 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:01 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.22486 (min) 0.486931 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.1691 (min) 0.276944 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.347834 (min) -0.310963 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.48449 (min) 10.4903 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.574255 (min) 1.69837 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 37.3528 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6517 (min) 14.2177 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.7804 (min) 33.1191 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -8.2851e-05 (min) 0.000300017 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:01 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:01 DEBUG opendrift:671: No elements hit coastline.
09:59:01 DEBUG opendrift:702: No elements hit seafloor.
09:59:01 DEBUG opendrift:1720: No elements to deactivate
09:59:01 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:01 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:01 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:01 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
09:59:01 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 3]
09:59:01 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0]
09:59:01 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 390. 0.]
[ 0. 0. 0. 0. 0.]
[ 21. 0. 0. 67. 0.]
[ 18. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:01 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:01 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:01 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:01 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:01 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.08039215985697297
09:59:01 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:01 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:01 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:01 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:59:01 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:59:01 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:01 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:01 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:01 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:01 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:01 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:01 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:01 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(98), np.int64(0), np.int64(16), np.int64(386), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:01 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:01 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:01 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:01 DEBUG opendrift:2095: ======================================================================
09:59:01 INFO opendrift:2096: 2025-06-17 15:28:03.273845 - step 60 of 96 - 500 active elements (0 deactivated)
09:59:01 DEBUG opendrift:2102: 0 elements scheduled.
09:59:01 DEBUG opendrift:2104: ======================================================================
09:59:01 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.74661219229458
09:59:01 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.954471586349856
09:59:01 DEBUG opendrift:2115: -32.935462951660156 <- z -> -0.03241949204820438
09:59:01 DEBUG opendrift:2116: ---------------------------------
09:59:01 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:01 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:01 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:01 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:01 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:01 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:01 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:01 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 15:00:00 (before)
2025-06-17 16:00:00 (after)
09:59:02 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:02 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:02 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:02 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:02 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:02 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:02 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 57x41x7) for time after (2025-06-17 16:00:00)
09:59:02 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 15:00:00) in space (linearNDFast)
09:59:02 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:02 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 16:00:00) in space (linearNDFast)
09:59:02 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:02 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 15:00:00, weight 0.53) and
after (2025-06-17 16:00:00, weight 0.47) in time
09:59:02 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:02 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.045539408811166 degrees.
09:59:02 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.045539408811166 degrees.
09:59:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:02 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:02 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:02 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:02 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:02 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:02 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:02 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:02 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:02 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:02 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:02 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:02 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:02 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:02 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:02 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:02 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:02 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:02 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:02 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:02 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.218721 (min) 0.41966 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.221906 (min) 0.259962 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.311346 (min) -0.275709 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.54896 (min) 9.83576 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.355153 (min) 2.11248 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 37.298 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6583 (min) 14.747 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 27.8615 (min) 33.0188 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -8.81e-05 (min) 0.000294712 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:02 DEBUG opendrift:671: No elements hit coastline.
09:59:02 DEBUG opendrift:702: No elements hit seafloor.
09:59:02 DEBUG opendrift:1720: No elements to deactivate
09:59:02 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:02 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:02 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:02 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
09:59:02 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:02 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.07269947618119679
09:59:02 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:02 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:02 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:02 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:59:02 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:02 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:02 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:02 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:02 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:02 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:02 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:02 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(98), np.int64(0), np.int64(15), np.int64(387), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:02 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:02 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:02 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:02 DEBUG opendrift:2095: ======================================================================
09:59:02 INFO opendrift:2096: 2025-06-17 15:58:03.273845 - step 61 of 96 - 500 active elements (0 deactivated)
09:59:02 DEBUG opendrift:2102: 0 elements scheduled.
09:59:02 DEBUG opendrift:2104: ======================================================================
09:59:02 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.7492177235794
09:59:02 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.960389918428875
09:59:02 DEBUG opendrift:2115: -32.935462951660156 <- z -> -0.0836953804905185
09:59:02 DEBUG opendrift:2116: ---------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:02 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:02 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:02 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:02 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 15:00:00 (before)
2025-06-17 16:00:00 (after)
09:59:02 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 15:00:00) in space (linearNDFast)
09:59:02 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:02 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 16:00:00) in space (linearNDFast)
09:59:02 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:02 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 15:00:00, weight 0.03) and
after (2025-06-17 16:00:00, weight 0.97) in time
09:59:02 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:02 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.03962107149912 degrees.
09:59:02 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.03962107149912 degrees.
09:59:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:02 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:02 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:02 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:02 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:02 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:02 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:02 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:02 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:02 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:02 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:02 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:02 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:02 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:02 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:02 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:02 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:02 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:02 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:02 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:02 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:02 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.212349 (min) 0.42784 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.222032 (min) 0.260475 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.273052 (min) -0.238772 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.36567 (min) 9.14497 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.103593 (min) 2.774 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 37.2881 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6633 (min) 14.7526 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 27.8764 (min) 33.0171 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -3.76019e-05 (min) 0.000346652 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:02 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:03 DEBUG opendrift:671: No elements hit coastline.
09:59:03 DEBUG opendrift:702: No elements hit seafloor.
09:59:03 DEBUG opendrift:1720: No elements to deactivate
09:59:03 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:03 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:03 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:03 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:59:03 DEBUG opendrift.models.chemicaldrift:1476: old species: [3]
09:59:03 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
09:59:03 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 390. 0.]
[ 0. 0. 0. 0. 0.]
[ 21. 0. 0. 69. 0.]
[ 19. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:03 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:03 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:03 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:03 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:03 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.06549660114142745
09:59:03 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:03 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:03 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:03 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:03 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:03 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:03 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:03 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:03 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:03 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(99), np.int64(0), np.int64(15), np.int64(386), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:03 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:03 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:03 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:03 DEBUG opendrift:2095: ======================================================================
09:59:03 INFO opendrift:2096: 2025-06-17 16:28:03.273845 - step 62 of 96 - 500 active elements (0 deactivated)
09:59:03 DEBUG opendrift:2102: 0 elements scheduled.
09:59:03 DEBUG opendrift:2104: ======================================================================
09:59:03 DEBUG opendrift:2115: 57.5457777755823 <- latitude -> 57.750990315997946
09:59:03 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.961704703404608
09:59:03 DEBUG opendrift:2115: -32.935462951660156 <- z -> -0.7759689339616906
09:59:03 DEBUG opendrift:2116: ---------------------------------
09:59:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:03 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:03 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 16:00:00 (before)
2025-06-17 17:00:00 (after)
09:59:05 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:05 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:05 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:05 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:05 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:05 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:05 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 57x41x7) for time after (2025-06-17 17:00:00)
09:59:05 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 16:00:00) in space (linearNDFast)
09:59:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:05 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 17:00:00) in space (linearNDFast)
09:59:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:05 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 16:00:00, weight 0.53) and
after (2025-06-17 17:00:00, weight 0.47) in time
09:59:05 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.03830629852503 degrees.
09:59:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.03830629852503 degrees.
09:59:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:05 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:05 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:05 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:05 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:05 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:05 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:05 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:05 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.205453 (min) 0.47766 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.249263 (min) 0.251041 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.224504 (min) -0.191022 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.17487 (min) 9.32879 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.272915 (min) 2.98009 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 36.8822 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6675 (min) 14.177 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 30.1283 (min) 33.1108 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000139842 (min) 0.000377709 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:05 DEBUG opendrift:671: No elements hit coastline.
09:59:05 DEBUG opendrift:702: No elements hit seafloor.
09:59:05 DEBUG opendrift:1720: No elements to deactivate
09:59:05 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:05 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:05 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:05 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
09:59:05 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0]
09:59:05 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3]
09:59:05 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 392. 0.]
[ 0. 0. 0. 0. 0.]
[ 21. 0. 0. 69. 0.]
[ 19. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:05 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:05 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:05 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:05 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:05 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.06930061985278604
09:59:05 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:05 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:05 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:05 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
09:59:05 DEBUG opendrift:707: Lifting 2 elements to seafloor.
09:59:05 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:05 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:05 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:05 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:05 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:05 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(97), np.int64(0), np.int64(15), np.int64(388), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:05 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:05 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:05 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:05 DEBUG opendrift:2095: ======================================================================
09:59:05 INFO opendrift:2096: 2025-06-17 16:58:03.273845 - step 63 of 96 - 500 active elements (0 deactivated)
09:59:05 DEBUG opendrift:2102: 0 elements scheduled.
09:59:05 DEBUG opendrift:2104: ======================================================================
09:59:05 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.75185006962995
09:59:05 DEBUG opendrift:2115: 10.52686758895712 <- longitude -> 10.96657623774722
09:59:05 DEBUG opendrift:2115: -32.935462951660156 <- z -> 0.0
09:59:05 DEBUG opendrift:2116: ---------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:05 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:05 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 16:00:00 (before)
2025-06-17 17:00:00 (after)
09:59:05 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 16:00:00) in space (linearNDFast)
09:59:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:05 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 17:00:00) in space (linearNDFast)
09:59:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:05 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 16:00:00, weight 0.03) and
after (2025-06-17 17:00:00, weight 0.97) in time
09:59:05 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.03343476751299 degrees.
09:59:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.03343476751299 degrees.
09:59:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:05 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:05 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:05 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:05 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:05 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:05 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:05 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:05 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.198521 (min) 0.379874 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.36405 (min) 0.240917 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.175244 (min) -0.142522 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.86557 (min) 9.60896 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.590111 (min) 3.13065 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 36.3263 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6716 (min) 14.589 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.623 (min) 33.0933 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -4.75673e-05 (min) 0.000356275 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:05 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:05 DEBUG opendrift:671: No elements hit coastline.
09:59:05 DEBUG opendrift:702: No elements hit seafloor.
09:59:05 DEBUG opendrift:1720: No elements to deactivate
09:59:05 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:05 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:05 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:05 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
09:59:05 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0]
09:59:05 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3]
09:59:05 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 395. 0.]
[ 0. 0. 0. 0. 0.]
[ 21. 0. 0. 69. 0.]
[ 19. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:05 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:05 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:05 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:05 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:05 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.07380741852854368
09:59:05 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:05 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:05 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:05 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:544: 3 elements reached seafloor, interacting with bottom
09:59:05 DEBUG opendrift:707: Lifting 3 elements to seafloor.
09:59:05 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:05 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:05 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:05 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:05 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:05 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:05 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(94), np.int64(0), np.int64(15), np.int64(391), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:05 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:05 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:05 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:05 DEBUG opendrift:2095: ======================================================================
09:59:05 INFO opendrift:2096: 2025-06-17 17:28:03.273845 - step 64 of 96 - 500 active elements (0 deactivated)
09:59:05 DEBUG opendrift:2102: 0 elements scheduled.
09:59:05 DEBUG opendrift:2104: ======================================================================
09:59:05 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.751253782628886
09:59:05 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.974704647370919
09:59:05 DEBUG opendrift:2115: -32.935462951660156 <- z -> 0.0
09:59:05 DEBUG opendrift:2116: ---------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:05 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:05 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 17:00:00 (before)
2025-06-17 18:00:00 (after)
09:59:07 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:07 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:07 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:07 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:07 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:07 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:07 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 57x41x7) for time after (2025-06-17 18:00:00)
09:59:07 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 17:00:00) in space (linearNDFast)
09:59:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:07 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 18:00:00) in space (linearNDFast)
09:59:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:07 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 17:00:00, weight 0.53) and
after (2025-06-17 18:00:00, weight 0.47) in time
09:59:07 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.02530635185767 degrees.
09:59:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.02530635185767 degrees.
09:59:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:07 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:07 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:07 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:07 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:07 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:07 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.196902 (min) 0.379751 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.443905 (min) 0.228273 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.131563 (min) -0.0996332 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.64625 (min) 10.1001 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.24965 (min) 3.11898 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 36.0542 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6765 (min) 14.5843 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.6467 (min) 33.1927 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000183543 (min) 0.000524138 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:07 DEBUG opendrift:671: No elements hit coastline.
09:59:07 DEBUG opendrift:702: No elements hit seafloor.
09:59:07 DEBUG opendrift:1720: No elements to deactivate
09:59:07 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:07 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:07 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:07 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
09:59:07 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0 0]
09:59:07 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3 3]
09:59:07 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 400. 0.]
[ 0. 0. 0. 0. 0.]
[ 21. 0. 0. 69. 0.]
[ 19. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:07 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:07 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:07 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:07 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:07 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.08074921622373037
09:59:07 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:07 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:07 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:07 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:544: 5 elements reached seafloor, interacting with bottom
09:59:07 DEBUG opendrift:707: Lifting 5 elements to seafloor.
09:59:07 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:07 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:07 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:07 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:07 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:07 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(89), np.int64(0), np.int64(15), np.int64(396), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:07 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:07 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:07 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:07 DEBUG opendrift:2095: ======================================================================
09:59:07 INFO opendrift:2096: 2025-06-17 17:58:03.273845 - step 65 of 96 - 500 active elements (0 deactivated)
09:59:07 DEBUG opendrift:2102: 0 elements scheduled.
09:59:07 DEBUG opendrift:2104: ======================================================================
09:59:07 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.75152265027193
09:59:07 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.978550917210493
09:59:07 DEBUG opendrift:2115: -32.935462951660156 <- z -> 0.0
09:59:07 DEBUG opendrift:2116: ---------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:07 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 17:00:00 (before)
2025-06-17 18:00:00 (after)
09:59:07 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 17:00:00) in space (linearNDFast)
09:59:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:07 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 18:00:00) in space (linearNDFast)
09:59:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:07 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 17:00:00, weight 0.03) and
after (2025-06-17 18:00:00, weight 0.97) in time
09:59:07 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.02146007239108 degrees.
09:59:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.02146007239108 degrees.
09:59:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:07 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:07 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:07 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:07 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:07 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:07 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.191755 (min) 0.391071 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.518976 (min) 0.215453 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0882691 (min) -0.0571332 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.13686 (min) 10.7343 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.82513 (min) 3.13983 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 36.3086 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6815 (min) 14.1862 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 30.5699 (min) 33.1914 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -5.10539e-05 (min) 0.000326812 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:07 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:07 DEBUG opendrift:671: No elements hit coastline.
09:59:07 DEBUG opendrift:702: No elements hit seafloor.
09:59:07 DEBUG opendrift:1720: No elements to deactivate
09:59:07 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:07 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:07 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:07 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
09:59:07 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 2 0 0]
09:59:07 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0 3 3]
09:59:07 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 403. 0.]
[ 0. 0. 0. 0. 0.]
[ 22. 0. 0. 69. 0.]
[ 19. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:07 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:07 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:07 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:07 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:07 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.09005301013467772
09:59:07 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:07 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:07 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:07 DEBUG opendrift.models.oceandrift:544: 3 elements reached seafloor, interacting with bottom
09:59:07 DEBUG opendrift:707: Lifting 3 elements to seafloor.
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:59:07 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:07 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:07 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:07 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:07 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:07 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:07 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(87), np.int64(0), np.int64(13), np.int64(400), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:07 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:07 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:07 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:07 DEBUG opendrift:2095: ======================================================================
09:59:07 INFO opendrift:2096: 2025-06-17 18:28:03.273845 - step 66 of 96 - 500 active elements (0 deactivated)
09:59:07 DEBUG opendrift:2102: 0 elements scheduled.
09:59:07 DEBUG opendrift:2104: ======================================================================
09:59:07 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.75139744225976
09:59:07 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.986560579049764
09:59:07 DEBUG opendrift:2115: -32.935462951660156 <- z -> -0.020167773342917528
09:59:07 DEBUG opendrift:2116: ---------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:07 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 18:00:00 (before)
2025-06-17 19:00:00 (after)
09:59:09 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:09 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:09 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:09 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:09 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:09 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:09 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 57x41x7) for time after (2025-06-17 19:00:00)
09:59:09 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 18:00:00) in space (linearNDFast)
09:59:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:09 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 19:00:00) in space (linearNDFast)
09:59:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:09 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 18:00:00, weight 0.53) and
after (2025-06-17 19:00:00, weight 0.47) in time
09:59:09 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.01345042255883 degrees.
09:59:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.01345042255883 degrees.
09:59:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:09 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:09 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:09 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:09 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:09 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:09 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.196922 (min) 0.405815 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.375467 (min) 0.203695 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0601609 (min) -0.0291281 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.50657 (min) 10.9321 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.89345 (min) 3.32289 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 36.5896 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6903 (min) 14.5637 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.7238 (min) 33.1864 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -5.05087e-05 (min) 0.000448662 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:09 DEBUG opendrift:671: No elements hit coastline.
09:59:09 DEBUG opendrift:702: No elements hit seafloor.
09:59:09 DEBUG opendrift:1720: No elements to deactivate
09:59:09 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:09 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:09 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:09 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
09:59:09 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0]
09:59:09 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3]
09:59:09 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 405. 0.]
[ 0. 0. 0. 0. 0.]
[ 22. 0. 0. 70. 0.]
[ 19. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:09 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:09 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:09 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:09 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:09 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.09382837565159909
09:59:09 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:09 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:09 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:09 DEBUG opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
09:59:09 DEBUG opendrift:707: Lifting 2 elements to seafloor.
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:59:09 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:09 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:09 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:09 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:09 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:09 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(85), np.int64(0), np.int64(12), np.int64(403), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:09 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:09 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:09 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:09 DEBUG opendrift:2095: ======================================================================
09:59:09 INFO opendrift:2096: 2025-06-17 18:58:03.273845 - step 67 of 96 - 500 active elements (0 deactivated)
09:59:09 DEBUG opendrift:2102: 0 elements scheduled.
09:59:09 DEBUG opendrift:2104: ======================================================================
09:59:09 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.75137281022203
09:59:09 DEBUG opendrift:2115: 10.526867588957126 <- longitude -> 10.984865738622386
09:59:09 DEBUG opendrift:2115: -32.935462951660156 <- z -> -0.019158240707986773
09:59:09 DEBUG opendrift:2116: ---------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:09 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 18:00:00 (before)
2025-06-17 19:00:00 (after)
09:59:09 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 18:00:00) in space (linearNDFast)
09:59:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:09 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 19:00:00) in space (linearNDFast)
09:59:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:09 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 18:00:00, weight 0.03) and
after (2025-06-17 19:00:00, weight 0.97) in time
09:59:09 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.0151452680549 degrees.
09:59:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.0151452680549 degrees.
09:59:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:09 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:09 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:09 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:09 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:09 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:09 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.200961 (min) 0.385971 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.380773 (min) 0.19201 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0360029 (min) -0.00212809 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.8283 (min) 11.2295 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.73338 (min) 3.52176 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 36.7138 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.6994 (min) 14.551 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.7498 (min) 33.1814 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -8.55603e-05 (min) 0.000377957 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:09 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:09 DEBUG opendrift:671: No elements hit coastline.
09:59:09 DEBUG opendrift:702: No elements hit seafloor.
09:59:09 DEBUG opendrift:1720: No elements to deactivate
09:59:09 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:09 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:09 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:09 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
09:59:09 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 0 0 0]
09:59:09 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3 3 3]
09:59:09 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 408. 0.]
[ 0. 0. 0. 0. 0.]
[ 22. 0. 0. 71. 0.]
[ 20. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:09 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:09 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:09 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:09 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:09 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.098228152033595
09:59:09 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:09 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:09 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:544: 3 elements reached seafloor, interacting with bottom
09:59:09 DEBUG opendrift:707: Lifting 3 elements to seafloor.
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:09 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:09 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:09 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:09 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:09 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:09 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(83), np.int64(0), np.int64(12), np.int64(405), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:09 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:09 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:09 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:09 DEBUG opendrift:2095: ======================================================================
09:59:09 INFO opendrift:2096: 2025-06-17 19:28:03.273845 - step 68 of 96 - 500 active elements (0 deactivated)
09:59:09 DEBUG opendrift:2102: 0 elements scheduled.
09:59:09 DEBUG opendrift:2104: ======================================================================
09:59:09 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.751158250119296
09:59:09 DEBUG opendrift:2115: 10.526867588957126 <- longitude -> 10.981728455560189
09:59:09 DEBUG opendrift:2115: -32.935462951660156 <- z -> 0.0
09:59:09 DEBUG opendrift:2116: ---------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:09 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 19:00:00 (before)
2025-06-17 20:00:00 (after)
09:59:11 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:11 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:11 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:11 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:11 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:11 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:11 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 57x41x7) for time after (2025-06-17 20:00:00)
09:59:11 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 19:00:00) in space (linearNDFast)
09:59:11 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:11 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 20:00:00) in space (linearNDFast)
09:59:11 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:11 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 19:00:00, weight 0.53) and
after (2025-06-17 20:00:00, weight 0.47) in time
09:59:11 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:11 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.018282548166674 degrees.
09:59:11 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.018282548166674 degrees.
09:59:11 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:11 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:11 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:11 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:11 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:11 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:11 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:11 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:11 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:11 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:11 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:11 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:11 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:11 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:11 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:11 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:11 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:11 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:11 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:11 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:11 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:11 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:11 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.205435 (min) 0.34173 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.414634 (min) 0.186634 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0255474 (min) 0.0108446 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.90812 (min) 11.0905 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.41629 (min) 3.70853 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 36.7721 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.702 (min) 14.273 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.9993 (min) 33.1891 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000299567 (min) 0.000404295 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:11 DEBUG opendrift:671: No elements hit coastline.
09:59:11 DEBUG opendrift:702: No elements hit seafloor.
09:59:11 DEBUG opendrift:1720: No elements to deactivate
09:59:11 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:11 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:11 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:11 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:59:11 DEBUG opendrift.models.chemicaldrift:1476: old species: [0]
09:59:11 DEBUG opendrift.models.chemicaldrift:1477: new species: [3]
09:59:11 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 409. 0.]
[ 0. 0. 0. 0. 0.]
[ 22. 0. 0. 71. 0.]
[ 20. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:11 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:11 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:11 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:11 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:11 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.09786206475612169
09:59:11 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:11 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:11 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:11 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:59:11 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:11 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:11 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:11 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:11 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:11 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:11 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(82), np.int64(0), np.int64(12), np.int64(406), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:11 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:11 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:11 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:11 DEBUG opendrift:2095: ======================================================================
09:59:11 INFO opendrift:2096: 2025-06-17 19:58:03.273845 - step 69 of 96 - 500 active elements (0 deactivated)
09:59:11 DEBUG opendrift:2102: 0 elements scheduled.
09:59:11 DEBUG opendrift:2104: ======================================================================
09:59:11 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.75028167245921
09:59:11 DEBUG opendrift:2115: 10.526867588957126 <- longitude -> 10.979270177376987
09:59:11 DEBUG opendrift:2115: -34.09421510560369 <- z -> -0.020449087660031395
09:59:11 DEBUG opendrift:2116: ---------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:11 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:11 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:11 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:11 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 19:00:00 (before)
2025-06-17 20:00:00 (after)
09:59:11 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 19:00:00) in space (linearNDFast)
09:59:11 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:11 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 20:00:00) in space (linearNDFast)
09:59:11 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:11 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 19:00:00, weight 0.03) and
after (2025-06-17 20:00:00, weight 0.97) in time
09:59:11 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:11 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.02074083402926 degrees.
09:59:11 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.02074083402926 degrees.
09:59:11 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:11 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:11 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:11 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:11 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:11 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:11 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:11 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:11 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:11 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:11 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:11 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:11 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:11 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:11 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:11 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:11 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:11 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:11 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:11 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:11 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:11 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:11 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.214244 (min) 0.314355 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.385673 (min) 0.181696 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0152384 (min) 0.0228446 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.84165 (min) 10.9548 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.69513 (min) 3.88919 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 36.6687 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.7041 (min) 14.6219 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.6262 (min) 33.1766 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000322173 (min) 0.000371655 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:11 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:11 DEBUG opendrift:671: No elements hit coastline.
09:59:11 DEBUG opendrift:702: No elements hit seafloor.
09:59:11 DEBUG opendrift:1720: No elements to deactivate
09:59:11 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:11 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:11 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:11 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
09:59:11 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 3]
09:59:11 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0]
09:59:11 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 410. 0.]
[ 0. 0. 0. 0. 0.]
[ 22. 0. 0. 71. 0.]
[ 21. 0. 54. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:11 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:11 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:11 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:11 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:11 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.09764203251239256
09:59:11 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:11 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:11 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:11 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:59:11 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:11 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:11 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:11 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 2
09:59:11 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:11 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 2 elements
09:59:11 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:11 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(82), np.int64(0), np.int64(13), np.int64(405), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:11 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:11 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:11 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:11 DEBUG opendrift:2095: ======================================================================
09:59:11 INFO opendrift:2096: 2025-06-17 20:28:03.273845 - step 70 of 96 - 500 active elements (0 deactivated)
09:59:11 DEBUG opendrift:2102: 0 elements scheduled.
09:59:11 DEBUG opendrift:2104: ======================================================================
09:59:11 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.74993062818999
09:59:11 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.976020321997991
09:59:11 DEBUG opendrift:2115: -32.935462951660156 <- z -> -0.4899819136546125
09:59:11 DEBUG opendrift:2116: ---------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:11 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:11 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:11 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:11 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:11 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 20:00:00 (before)
2025-06-17 21:00:00 (after)
09:59:13 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:13 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:13 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:13 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:13 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:13 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:13 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 56x41x7) for time after (2025-06-17 21:00:00)
09:59:13 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 20:00:00) in space (linearNDFast)
09:59:13 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:13 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 21:00:00) in space (linearNDFast)
09:59:13 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:13 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 20:00:00, weight 0.53) and
after (2025-06-17 21:00:00, weight 0.47) in time
09:59:13 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:13 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.02399068964358 degrees.
09:59:13 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.02399068964358 degrees.
09:59:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:13 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:13 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:13 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:13 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:13 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:13 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:13 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:13 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:13 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:13 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:13 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:13 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.210922 (min) 0.286869 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.397572 (min) 0.187376 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0187476 (min) 0.0218119 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.31523 (min) 11.4281 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.48609 (min) 3.65622 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 36.7763 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.7089 (min) 14.604 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.6404 (min) 33.1619 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00017341 (min) 0.000378392 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:13 DEBUG opendrift:671: No elements hit coastline.
09:59:13 DEBUG opendrift:702: No elements hit seafloor.
09:59:13 DEBUG opendrift:1720: No elements to deactivate
09:59:13 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:13 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:13 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:13 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
09:59:13 DEBUG opendrift.models.chemicaldrift:1476: old species: [2 0 0 0]
09:59:13 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3 3 3]
09:59:13 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 413. 0.]
[ 0. 0. 0. 0. 0.]
[ 23. 0. 0. 72. 0.]
[ 21. 0. 56. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:13 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:13 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:13 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:13 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:13 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.10342134935017001
09:59:13 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:13 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:13 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:13 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:13 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 2
09:59:13 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:13 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 2 elements
09:59:13 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:13 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(80), np.int64(0), np.int64(14), np.int64(406), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:13 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:13 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:13 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:13 DEBUG opendrift:2095: ======================================================================
09:59:13 INFO opendrift:2096: 2025-06-17 20:58:03.273845 - step 71 of 96 - 500 active elements (0 deactivated)
09:59:13 DEBUG opendrift:2102: 0 elements scheduled.
09:59:13 DEBUG opendrift:2104: ======================================================================
09:59:13 DEBUG opendrift:2115: 57.5457777755823 <- latitude -> 57.749985864137905
09:59:13 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.97199211025965
09:59:13 DEBUG opendrift:2115: -32.935462951660156 <- z -> -0.1176890514463726
09:59:13 DEBUG opendrift:2116: ---------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:13 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:13 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 20:00:00 (before)
2025-06-17 21:00:00 (after)
09:59:13 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 20:00:00) in space (linearNDFast)
09:59:13 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:13 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 21:00:00) in space (linearNDFast)
09:59:13 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:13 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 20:00:00, weight 0.03) and
after (2025-06-17 21:00:00, weight 0.97) in time
09:59:13 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:13 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.02801889610119 degrees.
09:59:13 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.02801889610119 degrees.
09:59:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:13 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:13 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:13 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:13 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:13 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:13 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:13 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:13 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:13 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:13 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:13 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:13 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.215488 (min) 0.275918 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.380045 (min) 0.197799 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0234153 (min) 0.0198755 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.70678 (min) 12.0115 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.24323 (min) 3.39334 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 37.0329 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.7136 (min) 14.2948 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.0991 (min) 33.1732 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000336184 (min) 0.000292206 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:13 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:13 DEBUG opendrift:671: No elements hit coastline.
09:59:13 DEBUG opendrift:702: No elements hit seafloor.
09:59:13 DEBUG opendrift:1720: No elements to deactivate
09:59:13 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:13 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:13 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:13 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
09:59:13 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 0]
09:59:13 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 3]
09:59:13 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 417. 0.]
[ 0. 0. 0. 0. 0.]
[ 23. 0. 0. 72. 0.]
[ 21. 0. 58. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:13 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:13 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:13 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:13 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:13 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.11081450899735402
09:59:13 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:13 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:13 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:13 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
09:59:13 DEBUG opendrift:707: Lifting 2 elements to seafloor.
09:59:13 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 8 elements penetrated seafloor, lifting up
09:59:13 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:13 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 3
09:59:13 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:13 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 3 elements
09:59:13 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:13 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(76), np.int64(0), np.int64(17), np.int64(407), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:13 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:13 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:13 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:13 DEBUG opendrift:2095: ======================================================================
09:59:13 INFO opendrift:2096: 2025-06-17 21:28:03.273845 - step 72 of 96 - 500 active elements (0 deactivated)
09:59:13 DEBUG opendrift:2102: 0 elements scheduled.
09:59:13 DEBUG opendrift:2104: ======================================================================
09:59:13 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.75096739520003
09:59:13 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.967814578703349
09:59:13 DEBUG opendrift:2115: -37.39233431263931 <- z -> 0.0
09:59:13 DEBUG opendrift:2116: ---------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:13 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:13 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 21:00:00 (before)
2025-06-17 22:00:00 (after)
09:59:15 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:15 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:15 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:15 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:15 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:15 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:15 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 55x41x7) for time after (2025-06-17 22:00:00)
09:59:15 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 21:00:00) in space (linearNDFast)
09:59:15 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:15 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 22:00:00) in space (linearNDFast)
09:59:15 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:15 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 21:00:00, weight 0.53) and
after (2025-06-17 22:00:00, weight 0.47) in time
09:59:15 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:15 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.03219644479667 degrees.
09:59:15 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.03219644479667 degrees.
09:59:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:15 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:15 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:15 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:15 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:15 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:15 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:15 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:15 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:15 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:15 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:15 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:15 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:15 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.204877 (min) 0.317887 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.538077 (min) 0.218846 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0394047 (min) 0.00744307 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.0164 (min) 12.319 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.94171 (min) 2.90678 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 37.472 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.7166 (min) 14.4145 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.741 (min) 33.16 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000287857 (min) 0.000312768 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:15 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:15 DEBUG opendrift:671: No elements hit coastline.
09:59:15 DEBUG opendrift:707: Lifting 4 elements to seafloor.
09:59:15 DEBUG opendrift:1720: No elements to deactivate
09:59:15 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:15 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:15 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:15 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
09:59:15 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0]
09:59:15 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3]
09:59:15 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 420. 0.]
[ 0. 0. 0. 0. 0.]
[ 23. 0. 0. 72. 0.]
[ 21. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:15 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:15 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:15 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:15 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:15 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.11408196875226002
09:59:15 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:15 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:15 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:15 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:544: 3 elements reached seafloor, interacting with bottom
09:59:15 DEBUG opendrift:707: Lifting 3 elements to seafloor.
09:59:15 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:59:15 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:15 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:15 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:15 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:15 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:15 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:15 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:15 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(73), np.int64(0), np.int64(16), np.int64(411), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:15 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:15 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:15 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:15 DEBUG opendrift:2095: ======================================================================
09:59:15 INFO opendrift:2096: 2025-06-17 21:58:03.273845 - step 73 of 96 - 500 active elements (0 deactivated)
09:59:15 DEBUG opendrift:2102: 0 elements scheduled.
09:59:15 DEBUG opendrift:2104: ======================================================================
09:59:15 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.75168347498783
09:59:15 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.969589671041698
09:59:15 DEBUG opendrift:2115: -37.43779373168945 <- z -> -0.06833946936397339
09:59:15 DEBUG opendrift:2116: ---------------------------------
09:59:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:15 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:15 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 21:00:00 (before)
2025-06-17 22:00:00 (after)
09:59:15 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 21:00:00) in space (linearNDFast)
09:59:15 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:16 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 22:00:00) in space (linearNDFast)
09:59:16 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:16 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 21:00:00, weight 0.03) and
after (2025-06-17 22:00:00, weight 0.97) in time
09:59:16 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:16 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.03042135082408 degrees.
09:59:16 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.03042135082408 degrees.
09:59:16 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:16 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:16 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:16 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:16 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:16 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:16 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:16 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:16 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:16 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:16 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:16 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:16 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:16 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:16 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:16 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:16 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:16 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:16 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:16 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:16 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:16 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:16 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:16 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:16 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:16 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:16 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:16 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.268635 (min) 0.307314 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.411001 (min) 0.240631 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0559209 (min) -0.00571716 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.3016 (min) 12.611 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.49361 (min) 2.80262 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 37.472 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.7199 (min) 14.3675 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.0741 (min) 33.1507 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000329266 (min) 0.000241092 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:16 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:16 DEBUG opendrift:671: No elements hit coastline.
09:59:16 DEBUG opendrift:707: Lifting 10 elements to seafloor.
09:59:16 DEBUG opendrift:1720: No elements to deactivate
09:59:16 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:16 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:16 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:16 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
09:59:16 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0]
09:59:16 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3]
09:59:16 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 422. 0.]
[ 0. 0. 0. 0. 0.]
[ 23. 0. 0. 73. 0.]
[ 21. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:16 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:16 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:16 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:16 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:16 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.1180349092289896
09:59:16 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:16 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:16 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:16 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
09:59:16 DEBUG opendrift:707: Lifting 2 elements to seafloor.
09:59:16 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:16 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:16 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:16 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:16 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:16 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:16 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(71), np.int64(0), np.int64(16), np.int64(413), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:16 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:16 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:16 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:16 DEBUG opendrift:2095: ======================================================================
09:59:16 INFO opendrift:2096: 2025-06-17 22:28:03.273845 - step 74 of 96 - 500 active elements (0 deactivated)
09:59:16 DEBUG opendrift:2102: 0 elements scheduled.
09:59:16 DEBUG opendrift:2104: ======================================================================
09:59:16 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.752217734040514
09:59:16 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.961492539681961
09:59:16 DEBUG opendrift:2115: -37.421791076660156 <- z -> -0.35515502242879005
09:59:16 DEBUG opendrift:2116: ---------------------------------
09:59:16 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:16 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:16 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:16 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:16 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:16 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:16 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:16 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 22:00:00 (before)
2025-06-17 23:00:00 (after)
09:59:17 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:17 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:17 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:18 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:18 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:18 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:18 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 55x41x7) for time after (2025-06-17 23:00:00)
09:59:18 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 22:00:00) in space (linearNDFast)
09:59:18 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:18 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 23:00:00) in space (linearNDFast)
09:59:18 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:18 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 22:00:00, weight 0.53) and
after (2025-06-17 23:00:00, weight 0.47) in time
09:59:18 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:18 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.03851848372894 degrees.
09:59:18 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.03851848372894 degrees.
09:59:18 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:18 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:18 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:18 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:18 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:18 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:18 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:18 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:18 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:18 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:18 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:18 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:18 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:18 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:18 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:18 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:18 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:18 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:18 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:18 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:18 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.225916 (min) 0.302489 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.348382 (min) 0.269267 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0848409 (min) -0.0320219 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.1945 (min) 12.8801 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.883233 (min) 2.17064 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 37.472 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.7278 (min) 14.4803 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.8049 (min) 33.1269 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000246202 (min) 0.000261849 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:18 DEBUG opendrift:671: No elements hit coastline.
09:59:18 DEBUG opendrift:707: Lifting 17 elements to seafloor.
09:59:18 DEBUG opendrift:1720: No elements to deactivate
09:59:18 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:18 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:18 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:18 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 7
09:59:18 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 3 0 0 0 0 0]
09:59:18 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0 3 3 3 3 3]
09:59:18 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 428. 0.]
[ 0. 0. 0. 0. 0.]
[ 23. 0. 0. 73. 0.]
[ 22. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:18 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:18 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:18 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:18 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:18 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.12080671390998977
09:59:18 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:18 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:18 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:544: 6 elements reached seafloor, interacting with bottom
09:59:18 DEBUG opendrift:707: Lifting 6 elements to seafloor.
09:59:18 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:18 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:18 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:18 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:18 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:18 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(66), np.int64(0), np.int64(16), np.int64(418), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:18 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:18 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:18 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:18 DEBUG opendrift:2095: ======================================================================
09:59:18 INFO opendrift:2096: 2025-06-17 22:58:03.273845 - step 75 of 96 - 500 active elements (0 deactivated)
09:59:18 DEBUG opendrift:2102: 0 elements scheduled.
09:59:18 DEBUG opendrift:2104: ======================================================================
09:59:18 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.75276213232935
09:59:18 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.954683744252529
09:59:18 DEBUG opendrift:2115: -37.39334487915039 <- z -> -0.670042361315796
09:59:18 DEBUG opendrift:2116: ---------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:18 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:18 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:18 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:18 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 22:00:00 (before)
2025-06-17 23:00:00 (after)
09:59:18 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 22:00:00) in space (linearNDFast)
09:59:18 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:18 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-17 23:00:00) in space (linearNDFast)
09:59:18 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:18 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 22:00:00, weight 0.03) and
after (2025-06-17 23:00:00, weight 0.97) in time
09:59:18 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:18 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04532729004243 degrees.
09:59:18 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04532729004243 degrees.
09:59:18 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:18 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:18 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:18 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:18 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:18 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:18 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:18 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:18 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:18 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:18 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:18 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:18 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:18 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:18 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:18 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:18 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:18 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:18 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:18 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:18 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.192458 (min) 0.308854 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.479859 (min) 0.298378 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.114347 (min) -0.0590948 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.0009 (min) 13.1936 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.144235 (min) 1.49266 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 37.472 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.7315 (min) 14.4388 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.656 (min) 33.1193 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000358389 (min) 0.000232298 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:18 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:18 DEBUG opendrift:671: No elements hit coastline.
09:59:18 DEBUG opendrift:707: Lifting 25 elements to seafloor.
09:59:18 DEBUG opendrift:1720: No elements to deactivate
09:59:18 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:18 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:18 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:18 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:59:18 DEBUG opendrift.models.chemicaldrift:1476: old species: [2]
09:59:18 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
09:59:18 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 428. 0.]
[ 0. 0. 0. 0. 0.]
[ 24. 0. 0. 73. 0.]
[ 22. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:18 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:18 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:18 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:18 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:18 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.12594708851892927
09:59:18 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:18 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:18 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:18 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:18 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:18 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:18 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:18 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:18 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:18 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(67), np.int64(0), np.int64(15), np.int64(418), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:18 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:18 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:18 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:18 DEBUG opendrift:2095: ======================================================================
09:59:18 INFO opendrift:2096: 2025-06-17 23:28:03.273845 - step 76 of 96 - 500 active elements (0 deactivated)
09:59:18 DEBUG opendrift:2102: 0 elements scheduled.
09:59:18 DEBUG opendrift:2104: ======================================================================
09:59:18 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.75354261580529
09:59:18 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.955399036222945
09:59:18 DEBUG opendrift:2115: -37.36403274536133 <- z -> -1.3075636673386177
09:59:18 DEBUG opendrift:2116: ---------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:18 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:18 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:18 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:18 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:18 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 23:00:00 (before)
2025-06-18 00:00:00 (after)
09:59:20 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:20 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:20 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:20 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:20 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:20 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:20 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 56x41x7) for time after (2025-06-18 00:00:00)
09:59:20 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 23:00:00) in space (linearNDFast)
09:59:20 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:20 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 00:00:00) in space (linearNDFast)
09:59:20 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:20 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 23:00:00, weight 0.53) and
after (2025-06-18 00:00:00, weight 0.47) in time
09:59:20 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:20 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.044611990692445 degrees.
09:59:20 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.044611990692445 degrees.
09:59:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:20 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:20 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:20 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:20 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:20 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:20 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:20 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:20 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:20 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:20 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.174178 (min) 0.324975 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.442338 (min) 0.326849 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.153403 (min) -0.101337 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.3279 (min) 13.3286 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.794182 (min) 1.72905 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 37.472 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.7401 (min) 14.3869 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.7257 (min) 33.1234 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000403754 (min) 0.000219775 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:20 DEBUG opendrift:671: No elements hit coastline.
09:59:20 DEBUG opendrift:707: Lifting 30 elements to seafloor.
09:59:20 DEBUG opendrift:1720: No elements to deactivate
09:59:20 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:20 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:20 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:20 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
09:59:20 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 2]
09:59:20 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 0]
09:59:20 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 428. 0.]
[ 0. 0. 0. 0. 0.]
[ 25. 0. 0. 73. 0.]
[ 23. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:20 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:20 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:20 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:20 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:20 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.12920779097785784
09:59:20 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:20 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:20 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:20 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:20 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:20 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:20 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:20 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:20 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(69), np.int64(0), np.int64(14), np.int64(417), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:20 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:20 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:20 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:20 DEBUG opendrift:2095: ======================================================================
09:59:20 INFO opendrift:2096: 2025-06-17 23:58:03.273845 - step 77 of 96 - 500 active elements (0 deactivated)
09:59:20 DEBUG opendrift:2102: 0 elements scheduled.
09:59:20 DEBUG opendrift:2104: ======================================================================
09:59:20 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.754905155168174
09:59:20 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.953015336667002
09:59:20 DEBUG opendrift:2115: -37.325096130371094 <- z -> 0.0
09:59:20 DEBUG opendrift:2116: ---------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:20 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-17 23:00:00 (before)
2025-06-18 00:00:00 (after)
09:59:20 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-17 23:00:00) in space (linearNDFast)
09:59:20 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:20 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 00:00:00) in space (linearNDFast)
09:59:20 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:20 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-17 23:00:00, weight 0.03) and
after (2025-06-18 00:00:00, weight 0.97) in time
09:59:20 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:20 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.046995688058686 degrees.
09:59:20 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.046995688058686 degrees.
09:59:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:20 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:20 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:20 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:20 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:20 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:20 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:20 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:20 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:20 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:20 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.165322 (min) 0.338359 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.421494 (min) 0.355276 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.193792 (min) -0.140323 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.691 (min) 13.4477 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.41035 (min) 2.13581 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 37.8811 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.7494 (min) 14.2866 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.997 (min) 33.1244 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000442525 (min) 0.000206715 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:20 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:20 DEBUG opendrift:671: No elements hit coastline.
09:59:20 DEBUG opendrift:707: Lifting 33 elements to seafloor.
09:59:20 DEBUG opendrift:1720: No elements to deactivate
09:59:20 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:20 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:20 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:20 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
09:59:20 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:20 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.13305668180618258
09:59:20 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:20 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:20 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:20 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:20 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:20 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:20 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:20 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:20 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:20 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(69), np.int64(0), np.int64(14), np.int64(417), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:20 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:20 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:20 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:20 DEBUG opendrift:2095: ======================================================================
09:59:20 INFO opendrift:2096: 2025-06-18 00:28:03.273845 - step 78 of 96 - 500 active elements (0 deactivated)
09:59:20 DEBUG opendrift:2102: 0 elements scheduled.
09:59:20 DEBUG opendrift:2104: ======================================================================
09:59:20 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.75634102360103
09:59:20 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.950136247551612
09:59:20 DEBUG opendrift:2115: -37.285491943359375 <- z -> 0.0
09:59:20 DEBUG opendrift:2116: ---------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:20 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 00:00:00 (before)
2025-06-18 01:00:00 (after)
09:59:22 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:22 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:22 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:22 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:22 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:22 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:22 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 56x41x7) for time after (2025-06-18 01:00:00)
09:59:22 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 00:00:00) in space (linearNDFast)
09:59:22 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:22 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 01:00:00) in space (linearNDFast)
09:59:22 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:22 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 00:00:00, weight 0.53) and
after (2025-06-18 01:00:00, weight 0.47) in time
09:59:22 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:22 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04987478225548 degrees.
09:59:22 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04987478225548 degrees.
09:59:22 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:22 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:22 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:22 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:22 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:22 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:22 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:22 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:22 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:22 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:22 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:22 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:22 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:22 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:22 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:22 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:22 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:22 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:22 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:22 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:22 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:22 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:22 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.157434 (min) 0.343764 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.441548 (min) 0.376853 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.235486 (min) -0.180476 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.5195 (min) 13.1272 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.921818 (min) 1.50075 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 38.6754 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.7604 (min) 14.3072 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 30.2592 (min) 33.1036 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000493894 (min) 0.000191424 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:22 DEBUG opendrift:671: No elements hit coastline.
09:59:22 DEBUG opendrift:707: Lifting 33 elements to seafloor.
09:59:22 DEBUG opendrift:1720: No elements to deactivate
09:59:22 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:22 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:22 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:22 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 5
09:59:22 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 0 0 3 0]
09:59:22 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3 3 0 3]
09:59:22 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 431. 0.]
[ 0. 0. 0. 0. 0.]
[ 25. 0. 0. 73. 0.]
[ 25. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:22 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:22 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:22 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:22 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:22 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.1255527222755316
09:59:22 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:22 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:22 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:22 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:544: 3 elements reached seafloor, interacting with bottom
09:59:22 DEBUG opendrift:707: Lifting 3 elements to seafloor.
09:59:22 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:22 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:22 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:22 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:22 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:22 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(68), np.int64(0), np.int64(14), np.int64(418), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:22 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:22 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:22 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:22 DEBUG opendrift:2095: ======================================================================
09:59:22 INFO opendrift:2096: 2025-06-18 00:58:03.273845 - step 79 of 96 - 500 active elements (0 deactivated)
09:59:22 DEBUG opendrift:2102: 0 elements scheduled.
09:59:22 DEBUG opendrift:2104: ======================================================================
09:59:22 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.75770376880328
09:59:22 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.951638110606906
09:59:22 DEBUG opendrift:2115: -37.244136810302734 <- z -> -0.60067618253743
09:59:22 DEBUG opendrift:2116: ---------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:22 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:22 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:22 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:22 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 00:00:00 (before)
2025-06-18 01:00:00 (after)
09:59:22 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 00:00:00) in space (linearNDFast)
09:59:22 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:22 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 01:00:00) in space (linearNDFast)
09:59:22 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:22 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 00:00:00, weight 0.03) and
after (2025-06-18 01:00:00, weight 0.97) in time
09:59:22 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:22 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.048372919506235 degrees.
09:59:22 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.048372919506235 degrees.
09:59:22 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:22 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:22 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:22 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:22 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:22 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:22 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:22 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:22 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:22 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:22 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:22 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:22 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:22 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:22 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:22 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:22 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:22 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:22 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:22 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:22 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:22 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:22 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.155722 (min) 0.347196 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.390949 (min) 0.416037 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.278118 (min) -0.221329 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.3109 (min) 12.9089 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.375541 (min) 1.03214 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 39.5779 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.7682 (min) 14.3524 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.2348 (min) 33.0795 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000511194 (min) 0.000178697 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:22 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:22 DEBUG opendrift:671: No elements hit coastline.
09:59:22 DEBUG opendrift:707: Lifting 38 elements to seafloor.
09:59:22 DEBUG opendrift:1720: No elements to deactivate
09:59:22 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:22 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:22 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:22 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:59:22 DEBUG opendrift.models.chemicaldrift:1476: old species: [3]
09:59:22 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
09:59:22 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 431. 0.]
[ 0. 0. 0. 0. 0.]
[ 25. 0. 0. 73. 0.]
[ 26. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:22 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:22 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:22 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:22 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:22 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.12065285656479828
09:59:22 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:22 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:22 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:22 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:22 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:22 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:22 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:22 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:22 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:22 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(69), np.int64(0), np.int64(14), np.int64(417), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:22 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:22 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:22 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:22 DEBUG opendrift:2095: ======================================================================
09:59:22 INFO opendrift:2096: 2025-06-18 01:28:03.273845 - step 80 of 96 - 500 active elements (0 deactivated)
09:59:22 DEBUG opendrift:2102: 0 elements scheduled.
09:59:22 DEBUG opendrift:2104: ======================================================================
09:59:22 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.75925531365027
09:59:22 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.955017315217846
09:59:22 DEBUG opendrift:2115: -37.202659606933594 <- z -> -0.43305433756039236
09:59:22 DEBUG opendrift:2116: ---------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:22 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:22 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:22 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:22 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:22 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 01:00:00 (before)
2025-06-18 02:00:00 (after)
09:59:24 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:24 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:24 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:24 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:24 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:24 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:24 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 57x41x7) for time after (2025-06-18 02:00:00)
09:59:24 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 01:00:00) in space (linearNDFast)
09:59:24 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:24 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 02:00:00) in space (linearNDFast)
09:59:24 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:24 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 01:00:00, weight 0.53) and
after (2025-06-18 02:00:00, weight 0.47) in time
09:59:24 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:24 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.044993695825816 degrees.
09:59:24 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.044993695825816 degrees.
09:59:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:24 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:24 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:24 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:24 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:24 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:24 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:24 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:24 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:24 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:24 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.159771 (min) 0.362178 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.388763 (min) 0.421095 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.310241 (min) -0.254475 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.1572 (min) 12.4872 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.20157 (min) 0.583008 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 40.6952 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.7801 (min) 14.3369 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.8318 (min) 33.0716 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000504175 (min) 0.000186565 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:24 DEBUG opendrift:671: No elements hit coastline.
09:59:24 DEBUG opendrift:707: Lifting 38 elements to seafloor.
09:59:24 DEBUG opendrift:1720: No elements to deactivate
09:59:24 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:24 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:24 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:24 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
09:59:24 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 3 3]
09:59:24 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0 0]
09:59:24 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 432. 0.]
[ 0. 0. 0. 0. 0.]
[ 25. 0. 0. 73. 0.]
[ 28. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:24 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:24 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:24 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:24 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:24 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.11268161271806525
09:59:24 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:24 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:24 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:24 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:59:24 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:24 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:59:24 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:59:24 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:24 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:24 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:24 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:24 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:24 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(70), np.int64(0), np.int64(12), np.int64(418), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:24 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:24 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:24 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:24 DEBUG opendrift:2095: ======================================================================
09:59:24 INFO opendrift:2096: 2025-06-18 01:58:03.273845 - step 81 of 96 - 500 active elements (0 deactivated)
09:59:24 DEBUG opendrift:2102: 0 elements scheduled.
09:59:24 DEBUG opendrift:2104: ======================================================================
09:59:24 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.76057510464556
09:59:24 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.950645377609105
09:59:24 DEBUG opendrift:2115: -37.175655364990234 <- z -> -0.03331409870914204
09:59:24 DEBUG opendrift:2116: ---------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:24 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 01:00:00 (before)
2025-06-18 02:00:00 (after)
09:59:24 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 01:00:00) in space (linearNDFast)
09:59:24 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:24 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 02:00:00) in space (linearNDFast)
09:59:24 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:24 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 01:00:00, weight 0.03) and
after (2025-06-18 02:00:00, weight 0.97) in time
09:59:24 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:24 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04936563365734 degrees.
09:59:24 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04936563365734 degrees.
09:59:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:24 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:24 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:24 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:24 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:24 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:24 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:24 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:24 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:24 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:24 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.164219 (min) 0.356726 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.36326 (min) 0.44207 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.343752 (min) -0.288376 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.8394 (min) 12.2631 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.176 (min) 0.251979 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 41.5868 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.7929 (min) 14.3234 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.7956 (min) 33.0503 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000517975 (min) 0.000195499 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:24 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:24 DEBUG opendrift:671: No elements hit coastline.
09:59:24 DEBUG opendrift:707: Lifting 42 elements to seafloor.
09:59:24 DEBUG opendrift:1720: No elements to deactivate
09:59:24 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:24 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:24 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:24 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
09:59:24 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 3]
09:59:24 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 0]
09:59:24 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 432. 0.]
[ 0. 0. 0. 0. 0.]
[ 25. 0. 0. 75. 0.]
[ 30. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:24 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:24 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:24 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:24 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:24 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.10888466198295892
09:59:24 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:24 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:24 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:24 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:24 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:24 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:24 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:24 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:24 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:24 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(72), np.int64(0), np.int64(12), np.int64(416), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:24 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:24 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:24 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:24 DEBUG opendrift:2095: ======================================================================
09:59:24 INFO opendrift:2096: 2025-06-18 02:28:03.273845 - step 82 of 96 - 500 active elements (0 deactivated)
09:59:24 DEBUG opendrift:2102: 0 elements scheduled.
09:59:24 DEBUG opendrift:2104: ======================================================================
09:59:24 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.761759759661956
09:59:24 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.948137243158973
09:59:24 DEBUG opendrift:2115: -37.149654388427734 <- z -> -0.5943800647092903
09:59:24 DEBUG opendrift:2116: ---------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:24 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 02:00:00 (before)
2025-06-18 03:00:00 (after)
09:59:26 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:26 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:26 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:26 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:26 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:26 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:26 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 58x41x7) for time after (2025-06-18 03:00:00)
09:59:26 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 02:00:00) in space (linearNDFast)
09:59:26 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:26 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 03:00:00) in space (linearNDFast)
09:59:26 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:26 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 02:00:00, weight 0.53) and
after (2025-06-18 03:00:00, weight 0.47) in time
09:59:26 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:26 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.05187377302002 degrees.
09:59:26 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.05187377302002 degrees.
09:59:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:26 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:26 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:26 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:26 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:26 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:26 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:26 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:26 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:26 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:26 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.177558 (min) 0.390537 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.301663 (min) 0.447749 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.351861 (min) -0.295773 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.74992 (min) 11.9864 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: y_wind: -1.81065 (min) -0.33368 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 42.4244 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.8035 (min) 14.2158 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.8408 (min) 33.0718 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000482113 (min) 0.000206172 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:26 DEBUG opendrift:671: No elements hit coastline.
09:59:26 DEBUG opendrift:707: Lifting 41 elements to seafloor.
09:59:26 DEBUG opendrift:1720: No elements to deactivate
09:59:26 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:26 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:26 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:26 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
09:59:26 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:26 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.10468998400875452
09:59:26 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:26 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:26 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:26 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:26 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:26 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:26 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:26 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(72), np.int64(0), np.int64(12), np.int64(416), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:26 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:26 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:26 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:26 DEBUG opendrift:2095: ======================================================================
09:59:26 INFO opendrift:2096: 2025-06-18 02:58:03.273845 - step 83 of 96 - 500 active elements (0 deactivated)
09:59:26 DEBUG opendrift:2102: 0 elements scheduled.
09:59:26 DEBUG opendrift:2104: ======================================================================
09:59:26 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.76272393702342
09:59:26 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.94598365323406
09:59:26 DEBUG opendrift:2115: -39.14205295375679 <- z -> -0.042103962390665384
09:59:26 DEBUG opendrift:2116: ---------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:26 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 02:00:00 (before)
2025-06-18 03:00:00 (after)
09:59:26 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 02:00:00) in space (linearNDFast)
09:59:26 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:26 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 03:00:00) in space (linearNDFast)
09:59:26 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:26 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 02:00:00, weight 0.03) and
after (2025-06-18 03:00:00, weight 0.97) in time
09:59:26 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:26 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.054027363214445 degrees.
09:59:26 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.054027363214445 degrees.
09:59:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:26 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:26 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:26 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:26 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:26 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:26 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:26 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:26 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:26 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:26 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.155837 (min) 0.358113 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.392205 (min) 0.452307 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.358208 (min) -0.30139 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.67627 (min) 11.7674 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.41558 (min) -0.939145 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 43.1166 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.814 (min) 14.2135 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.1935 (min) 33.0646 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000466339 (min) 0.000299317 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:26 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:26 DEBUG opendrift:671: No elements hit coastline.
09:59:26 DEBUG opendrift:707: Lifting 41 elements to seafloor.
09:59:26 DEBUG opendrift:1720: No elements to deactivate
09:59:26 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:26 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:26 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:26 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:59:26 DEBUG opendrift.models.chemicaldrift:1476: old species: [3]
09:59:26 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
09:59:26 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 432. 0.]
[ 0. 0. 0. 0. 0.]
[ 25. 0. 0. 75. 0.]
[ 31. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:26 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:26 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:26 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:26 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:26 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.10301679420594115
09:59:26 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:26 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:26 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:26 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:26 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:26 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:26 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:26 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(73), np.int64(0), np.int64(12), np.int64(415), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:26 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:26 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:26 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:26 DEBUG opendrift:2095: ======================================================================
09:59:26 INFO opendrift:2096: 2025-06-18 03:28:03.273845 - step 84 of 96 - 500 active elements (0 deactivated)
09:59:26 DEBUG opendrift:2102: 0 elements scheduled.
09:59:26 DEBUG opendrift:2104: ======================================================================
09:59:26 DEBUG opendrift:2115: 57.5457777755823 <- latitude -> 57.763367971384994
09:59:26 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.95072312016883
09:59:26 DEBUG opendrift:2115: -38.28253979510854 <- z -> -0.6356175225453915
09:59:26 DEBUG opendrift:2116: ---------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:26 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 03:00:00 (before)
2025-06-18 04:00:00 (after)
09:59:29 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:29 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:29 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:29 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:29 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:29 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:29 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 59x41x7) for time after (2025-06-18 04:00:00)
09:59:29 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 03:00:00) in space (linearNDFast)
09:59:29 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:29 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 04:00:00) in space (linearNDFast)
09:59:29 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:29 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 03:00:00, weight 0.53) and
after (2025-06-18 04:00:00, weight 0.47) in time
09:59:29 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:29 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.049287897262666 degrees.
09:59:29 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.049287897262666 degrees.
09:59:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:29 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:29 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:29 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:29 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:29 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:29 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:29 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:29 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:29 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:29 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.16176 (min) 0.323677 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.470715 (min) 0.445111 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.336126 (min) -0.283201 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.84792 (min) 11.572 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.95608 (min) -1.44213 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 43.7777 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.832 (min) 14.2368 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 28.9839 (min) 33.0729 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000404091 (min) 0.000254275 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:29 DEBUG opendrift:671: No elements hit coastline.
09:59:29 DEBUG opendrift:702: No elements hit seafloor.
09:59:29 DEBUG opendrift:1720: No elements to deactivate
09:59:29 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:29 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:29 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:29 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:59:29 DEBUG opendrift.models.chemicaldrift:1476: old species: [3]
09:59:29 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
09:59:29 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 432. 0.]
[ 0. 0. 0. 0. 0.]
[ 25. 0. 0. 75. 0.]
[ 32. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:29 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:29 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:29 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:29 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:29 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.10172519038976563
09:59:29 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:29 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:29 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:29 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:29 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:29 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:29 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(74), np.int64(0), np.int64(12), np.int64(414), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:29 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:29 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:29 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:29 DEBUG opendrift:2095: ======================================================================
09:59:29 INFO opendrift:2096: 2025-06-18 03:58:03.273845 - step 85 of 96 - 500 active elements (0 deactivated)
09:59:29 DEBUG opendrift:2102: 0 elements scheduled.
09:59:29 DEBUG opendrift:2104: ======================================================================
09:59:29 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.763571861579074
09:59:29 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.952303963947616
09:59:29 DEBUG opendrift:2115: -37.143497467041016 <- z -> 0.0
09:59:29 DEBUG opendrift:2116: ---------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:29 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 03:00:00 (before)
2025-06-18 04:00:00 (after)
09:59:29 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 03:00:00) in space (linearNDFast)
09:59:29 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:29 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 04:00:00) in space (linearNDFast)
09:59:29 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:29 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 03:00:00, weight 0.03) and
after (2025-06-18 04:00:00, weight 0.97) in time
09:59:29 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:29 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04770706047939 degrees.
09:59:29 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04770706047939 degrees.
09:59:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:29 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:29 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:29 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:29 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:29 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:29 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:29 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:29 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:29 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:29 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.152648 (min) 0.292364 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.502226 (min) 0.437101 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.312072 (min) -0.264489 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: x_wind: 10.0155 (min) 11.4449 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.49613 (min) -1.93802 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 44.1831 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.8372 (min) 14.2432 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.2625 (min) 33.0665 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000397753 (min) 0.000318744 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:29 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:29 DEBUG opendrift:671: No elements hit coastline.
09:59:29 DEBUG opendrift:702: No elements hit seafloor.
09:59:29 DEBUG opendrift:1720: No elements to deactivate
09:59:29 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:29 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:29 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:29 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
09:59:29 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 3]
09:59:29 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 0]
09:59:29 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 432. 0.]
[ 0. 0. 0. 0. 0.]
[ 25. 0. 0. 75. 0.]
[ 34. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:29 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:29 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:29 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:29 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:29 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.10117256785092155
09:59:29 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:29 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:29 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:29 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:29 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:29 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:29 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:29 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:29 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(76), np.int64(0), np.int64(12), np.int64(412), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:29 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:29 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:29 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:29 DEBUG opendrift:2095: ======================================================================
09:59:29 INFO opendrift:2096: 2025-06-18 04:28:03.273845 - step 86 of 96 - 500 active elements (0 deactivated)
09:59:29 DEBUG opendrift:2102: 0 elements scheduled.
09:59:29 DEBUG opendrift:2104: ======================================================================
09:59:29 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.763333143262905
09:59:29 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.947703384029296
09:59:29 DEBUG opendrift:2115: -39.27275791194602 <- z -> 0.0
09:59:29 DEBUG opendrift:2116: ---------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
09:59:29 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 04:00:00 (before)
2025-06-18 05:00:00 (after)
09:59:31 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:31 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:31 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:31 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:31 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:31 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:31 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 59x41x7) for time after (2025-06-18 05:00:00)
09:59:31 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 04:00:00) in space (linearNDFast)
09:59:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:31 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 05:00:00) in space (linearNDFast)
09:59:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:31 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 04:00:00, weight 0.53) and
after (2025-06-18 05:00:00, weight 0.47) in time
09:59:31 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.05230764592831 degrees.
09:59:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.05230764592831 degrees.
09:59:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:31 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:31 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:31 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:31 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:31 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:31 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.156982 (min) 0.349302 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.466301 (min) 0.424155 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.27294 (min) -0.228641 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.92946 (min) 11.1822 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.61781 (min) -2.25948 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 44.3763 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.8459 (min) 14.2686 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.0385 (min) 33.0775 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000384329 (min) 0.000470802 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:31 DEBUG opendrift:671: No elements hit coastline.
09:59:31 DEBUG opendrift:702: No elements hit seafloor.
09:59:31 DEBUG opendrift:1720: No elements to deactivate
09:59:31 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:31 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:31 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:31 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
09:59:31 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 3]
09:59:31 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0]
09:59:31 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 433. 0.]
[ 0. 0. 0. 0. 0.]
[ 25. 0. 0. 75. 0.]
[ 35. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:31 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:31 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:31 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:31 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:31 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.09750997927376148
09:59:31 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:31 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:31 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:59:31 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:31 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:31 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:31 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:31 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(76), np.int64(0), np.int64(12), np.int64(412), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:31 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:31 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:31 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:31 DEBUG opendrift:2095: ======================================================================
09:59:31 INFO opendrift:2096: 2025-06-18 04:58:03.273845 - step 87 of 96 - 500 active elements (0 deactivated)
09:59:31 DEBUG opendrift:2102: 0 elements scheduled.
09:59:31 DEBUG opendrift:2104: ======================================================================
09:59:31 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.76300841836181
09:59:31 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.9429726103254
09:59:31 DEBUG opendrift:2115: -37.143497467041016 <- z -> -0.054327518689632814
09:59:31 DEBUG opendrift:2116: ---------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 499 elements
09:59:31 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 04:00:00 (before)
2025-06-18 05:00:00 (after)
09:59:31 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 04:00:00) in space (linearNDFast)
09:59:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:31 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 05:00:00) in space (linearNDFast)
09:59:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:31 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 04:00:00, weight 0.03) and
after (2025-06-18 05:00:00, weight 0.97) in time
09:59:31 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.057038415717805 degrees.
09:59:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.057038415717805 degrees.
09:59:31 DEBUG opendrift.readers.basereader.variables:836: Masking 1 elements outside coverage
09:59:31 DEBUG opendrift.models.basemodel.environment:751: Data missing for 1 elements.
09:59:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
09:59:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:31 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
09:59:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
09:59:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:31 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:31 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:31 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:31 DEBUG opendrift.models.basemodel.environment:775: Using fallback value 0 for sea_surface_height for 1 elements
09:59:31 DEBUG opendrift.models.basemodel.environment:775: Using fallback value 0 for x_wind for 1 elements
09:59:31 DEBUG opendrift.models.basemodel.environment:775: Using fallback value 0 for y_wind for 1 elements
09:59:31 DEBUG opendrift.models.basemodel.environment:775: Using fallback value 10000 for sea_floor_depth_below_sea_level for 1 elements
09:59:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:31 DEBUG opendrift.models.basemodel.environment:775: Using fallback value 10 for sea_water_temperature for 1 elements
09:59:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 1 profiles
09:59:31 DEBUG opendrift.models.basemodel.environment:775: Using fallback value 34 for sea_water_salinity for 1 elements
09:59:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 1 profiles
09:59:31 DEBUG opendrift.models.basemodel.environment:775: Using fallback value 0 for upward_sea_water_velocity for 1 elements
09:59:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:31 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:31 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.137235 (min) 0.326238 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.320153 (min) 0.410867 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.232762 (min) 0 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0 (min) 10.7926 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.70989 (min) 0 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 10000 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 10 (min) 14.336 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.2029 (min) 34 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000368323 (min) 0.000512036 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:31 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:31 WARNING opendrift:2377: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
09:59:31 DEBUG opendrift:1693: Added status missing_data
09:59:31 DEBUG opendrift:1704: 1 elements scheduled for deactivation (missing_data)
09:59:31 DEBUG opendrift:1706: (z: -8.962837 to -8.962837)
09:59:31 DEBUG opendrift:671: No elements hit coastline.
09:59:31 DEBUG opendrift:702: No elements hit seafloor.
09:59:31 DEBUG opendrift:1724: Removed 1 elements.
09:59:31 DEBUG opendrift:1727: Removed 1 values from environment.
09:59:31 DEBUG opendrift:1732: remove items from profile for z
09:59:31 DEBUG opendrift:1732: remove items from profile for sea_water_salinity
09:59:31 DEBUG opendrift:1732: remove items from profile for sea_water_temperature
09:59:31 DEBUG opendrift:1732: remove items from profile for ocean_vertical_diffusivity
09:59:31 DEBUG opendrift:1732: remove items from profile for sea_water_ph_reported_on_total_scale
09:59:31 DEBUG opendrift:1736: Removed 1 values from environment_profiles.
09:59:31 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:31 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:31 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:31 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
09:59:31 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 0]
09:59:31 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3]
09:59:31 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 434. 0.]
[ 0. 0. 0. 0. 0.]
[ 25. 0. 0. 75. 0.]
[ 36. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:31 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:31 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:31 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:31 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:31 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.09370865077114626
09:59:31 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:31 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:31 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:31 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:59:31 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:31 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:31 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:31 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:31 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:31 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:31 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(76), np.int64(0), np.int64(11), np.int64(412), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:31 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:31 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:31 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:31 DEBUG opendrift:2095: ======================================================================
09:59:31 INFO opendrift:2096: 2025-06-18 05:28:03.273845 - step 88 of 96 - 499 active elements (1 deactivated)
09:59:31 DEBUG opendrift:2102: 0 elements scheduled.
09:59:31 DEBUG opendrift:2104: ======================================================================
09:59:31 DEBUG opendrift:2115: 57.5457777755823 <- latitude -> 57.762506261203534
09:59:31 DEBUG opendrift:2115: 10.526867588957126 <- longitude -> 10.943877384428248
09:59:31 DEBUG opendrift:2115: -37.143497467041016 <- z -> -1.0559321208157835
09:59:31 DEBUG opendrift:2116: ---------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 499 elements
09:59:31 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 05:00:00 (before)
2025-06-18 06:00:00 (after)
09:59:33 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:33 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:33 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:33 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:33 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:33 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:33 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 60x41x7) for time after (2025-06-18 06:00:00)
09:59:33 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 05:00:00) in space (linearNDFast)
09:59:33 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:33 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 06:00:00) in space (linearNDFast)
09:59:33 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:33 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 05:00:00, weight 0.53) and
after (2025-06-18 06:00:00, weight 0.47) in time
09:59:33 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:33 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.05613361848964 degrees.
09:59:33 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.05613361848964 degrees.
09:59:33 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:33 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:33 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:33 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:33 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 499 elements
09:59:33 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:33 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:33 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:33 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:33 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:33 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:33 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 499 elements
09:59:33 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:33 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:33 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:33 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:33 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:33 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:33 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:33 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:33 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:33 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:33 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.129016 (min) 0.282247 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.294649 (min) 0.393081 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.189312 (min) -0.153216 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.29215 (min) 10.3911 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.97389 (min) -2.90612 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 44.119 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.8673 (min) 14.3505 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.4388 (min) 33.0849 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00032932 (min) 0.000493823 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:33 DEBUG opendrift:671: No elements hit coastline.
09:59:33 DEBUG opendrift:702: No elements hit seafloor.
09:59:33 DEBUG opendrift:1720: No elements to deactivate
09:59:33 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:33 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:33 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:33 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
09:59:33 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:33 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.08940201492335965
09:59:33 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:33 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:33 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:33 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:33 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:33 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:33 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:33 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(76), np.int64(0), np.int64(11), np.int64(412), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:33 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:33 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:33 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:33 DEBUG opendrift:2095: ======================================================================
09:59:33 INFO opendrift:2096: 2025-06-18 05:58:03.273845 - step 89 of 96 - 499 active elements (1 deactivated)
09:59:33 DEBUG opendrift:2102: 0 elements scheduled.
09:59:33 DEBUG opendrift:2104: ======================================================================
09:59:33 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.76158065744484
09:59:33 DEBUG opendrift:2115: 10.526867588957124 <- longitude -> 10.943669781729934
09:59:33 DEBUG opendrift:2115: -37.143497467041016 <- z -> 0.0
09:59:33 DEBUG opendrift:2116: ---------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:33 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:33 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:33 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 499 elements
09:59:33 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 05:00:00 (before)
2025-06-18 06:00:00 (after)
09:59:33 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 05:00:00) in space (linearNDFast)
09:59:33 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:33 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 06:00:00) in space (linearNDFast)
09:59:33 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:33 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 05:00:00, weight 0.03) and
after (2025-06-18 06:00:00, weight 0.97) in time
09:59:33 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:33 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.05634122208868 degrees.
09:59:33 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.05634122208868 degrees.
09:59:33 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:33 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:33 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:33 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:33 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 499 elements
09:59:33 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:33 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:33 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:33 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:33 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:33 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:33 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 499 elements
09:59:33 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:33 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:33 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:33 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:33 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:33 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:33 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:33 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:33 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:33 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:33 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.121381 (min) 0.300404 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.53779 (min) 0.374983 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.145634 (min) -0.114528 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.81839 (min) 10.0171 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.25337 (min) -3.1434 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 43.7378 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.88 (min) 14.3562 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 30.1945 (min) 33.0828 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000324083 (min) 0.000484009 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:33 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:33 DEBUG opendrift:671: No elements hit coastline.
09:59:33 DEBUG opendrift:702: No elements hit seafloor.
09:59:33 DEBUG opendrift:1720: No elements to deactivate
09:59:33 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:33 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:33 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:33 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
09:59:33 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 0 3]
09:59:33 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 3 0]
09:59:33 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 437. 0.]
[ 0. 0. 0. 0. 0.]
[ 25. 0. 0. 75. 0.]
[ 37. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:33 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:33 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:33 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:33 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:33 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.08556298113284529
09:59:33 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:33 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:33 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:544: 3 elements reached seafloor, interacting with bottom
09:59:33 DEBUG opendrift:707: Lifting 3 elements to seafloor.
09:59:33 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:33 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:33 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:33 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:33 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:33 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(74), np.int64(0), np.int64(11), np.int64(414), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:33 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:33 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:33 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:33 DEBUG opendrift:2095: ======================================================================
09:59:33 INFO opendrift:2096: 2025-06-18 06:28:03.273845 - step 90 of 96 - 499 active elements (1 deactivated)
09:59:33 DEBUG opendrift:2102: 0 elements scheduled.
09:59:33 DEBUG opendrift:2104: ======================================================================
09:59:33 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.76023203226933
09:59:33 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.945350057251385
09:59:33 DEBUG opendrift:2115: -37.143497467041016 <- z -> 0.0
09:59:33 DEBUG opendrift:2116: ---------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:33 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:33 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:33 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:33 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 499 elements
09:59:33 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 06:00:00 (before)
2025-06-18 07:00:00 (after)
09:59:35 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:35 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:35 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:35 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:35 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:35 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:35 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 61x41x7) for time after (2025-06-18 07:00:00)
09:59:35 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 06:00:00) in space (linearNDFast)
09:59:35 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:35 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 07:00:00) in space (linearNDFast)
09:59:35 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:35 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 06:00:00, weight 0.53) and
after (2025-06-18 07:00:00, weight 0.47) in time
09:59:35 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:35 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.05466095202369 degrees.
09:59:35 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.05466095202369 degrees.
09:59:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 499 elements
09:59:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:35 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 499 elements
09:59:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:35 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:35 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:35 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:35 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:35 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:35 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:35 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:35 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:35 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.126521 (min) 0.340608 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.353176 (min) 0.349754 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.107792 (min) -0.0814083 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.48215 (min) 9.69732 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.14962 (min) -3.0834 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 43.1879 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.893 (min) 14.2395 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.0461 (min) 33.062 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000283637 (min) 0.000527797 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:35 DEBUG opendrift:671: No elements hit coastline.
09:59:35 DEBUG opendrift:702: No elements hit seafloor.
09:59:35 DEBUG opendrift:1720: No elements to deactivate
09:59:35 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:35 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:35 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:35 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
09:59:35 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 3 0 0]
09:59:35 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 0 3 3]
09:59:35 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 439. 0.]
[ 0. 0. 0. 0. 0.]
[ 25. 0. 0. 75. 0.]
[ 39. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:35 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:35 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:35 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:35 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:35 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.08027706693698117
09:59:35 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:35 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:35 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:35 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
09:59:35 DEBUG opendrift:707: Lifting 2 elements to seafloor.
09:59:35 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 5 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:35 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:35 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:35 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:35 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:35 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(74), np.int64(0), np.int64(11), np.int64(414), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:35 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:35 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:35 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:35 DEBUG opendrift:2095: ======================================================================
09:59:35 INFO opendrift:2096: 2025-06-18 06:58:03.273845 - step 91 of 96 - 499 active elements (1 deactivated)
09:59:35 DEBUG opendrift:2102: 0 elements scheduled.
09:59:35 DEBUG opendrift:2104: ======================================================================
09:59:35 DEBUG opendrift:2115: 57.5457777755823 <- latitude -> 57.758833250695425
09:59:35 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.951486103648609
09:59:35 DEBUG opendrift:2115: -37.143497467041016 <- z -> 0.0
09:59:35 DEBUG opendrift:2116: ---------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 499 elements
09:59:35 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 06:00:00 (before)
2025-06-18 07:00:00 (after)
09:59:35 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 06:00:00) in space (linearNDFast)
09:59:35 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:35 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 07:00:00) in space (linearNDFast)
09:59:35 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:35 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 06:00:00, weight 0.03) and
after (2025-06-18 07:00:00, weight 0.97) in time
09:59:35 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:35 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04852490621375 degrees.
09:59:35 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04852490621375 degrees.
09:59:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 499 elements
09:59:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:35 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 499 elements
09:59:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:35 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:35 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:35 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:35 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:35 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:35 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:35 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:35 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:35 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0989752 (min) 0.256639 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.610857 (min) 0.32403 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0703976 (min) -0.0474521 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.15544 (min) 9.37741 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.02098 (min) -3.00552 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 42.5552 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.9061 (min) 14.2433 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.6707 (min) 33.0829 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00031104 (min) 0.000593532 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:35 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:35 DEBUG opendrift:671: No elements hit coastline.
09:59:35 DEBUG opendrift:702: No elements hit seafloor.
09:59:35 DEBUG opendrift:1720: No elements to deactivate
09:59:35 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:35 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:35 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:35 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 4
09:59:35 DEBUG opendrift.models.chemicaldrift:1476: old species: [3 0 0 2]
09:59:35 DEBUG opendrift.models.chemicaldrift:1477: new species: [0 3 3 0]
09:59:35 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 441. 0.]
[ 0. 0. 0. 0. 0.]
[ 26. 0. 0. 75. 0.]
[ 40. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:35 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:35 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:35 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:35 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:35 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.0750045472975112
09:59:35 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:35 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:35 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:544: 2 elements reached seafloor, interacting with bottom
09:59:35 DEBUG opendrift:707: Lifting 2 elements to seafloor.
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:35 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:35 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:35 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:35 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:35 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(74), np.int64(0), np.int64(10), np.int64(415), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:35 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:35 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:35 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:35 DEBUG opendrift:2095: ======================================================================
09:59:35 INFO opendrift:2096: 2025-06-18 07:28:03.273845 - step 92 of 96 - 499 active elements (1 deactivated)
09:59:35 DEBUG opendrift:2102: 0 elements scheduled.
09:59:35 DEBUG opendrift:2104: ======================================================================
09:59:35 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.75755769068343
09:59:35 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.952694680561821
09:59:35 DEBUG opendrift:2115: -37.143497467041016 <- z -> 0.0
09:59:35 DEBUG opendrift:2116: ---------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 499 elements
09:59:35 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 07:00:00 (before)
2025-06-18 08:00:00 (after)
09:59:37 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:37 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:37 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:37 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:37 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:37 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:37 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 61x41x7) for time after (2025-06-18 08:00:00)
09:59:37 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 07:00:00) in space (linearNDFast)
09:59:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:37 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 08:00:00) in space (linearNDFast)
09:59:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:37 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 07:00:00, weight 0.53) and
after (2025-06-18 08:00:00, weight 0.47) in time
09:59:37 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04731632411323 degrees.
09:59:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04731632411323 degrees.
09:59:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 499 elements
09:59:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 499 elements
09:59:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:37 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:37 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:37 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:37 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.105574 (min) 0.239073 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.445859 (min) 0.29355 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0502621 (min) -0.0262232 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.09729 (min) 9.04899 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.81849 (min) -2.8264 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 42.1992 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.9297 (min) 14.3351 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.9194 (min) 33.1474 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000305706 (min) 0.00055986 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:37 DEBUG opendrift:671: No elements hit coastline.
09:59:37 DEBUG opendrift:702: No elements hit seafloor.
09:59:37 DEBUG opendrift:1720: No elements to deactivate
09:59:37 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:37 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:37 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:37 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:59:37 DEBUG opendrift.models.chemicaldrift:1476: old species: [3]
09:59:37 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
09:59:37 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 441. 0.]
[ 0. 0. 0. 0. 0.]
[ 26. 0. 0. 75. 0.]
[ 41. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:37 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:37 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:37 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:37 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:37 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.06946285144356713
09:59:37 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:37 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:37 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:37 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:37 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:37 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:37 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:37 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(75), np.int64(0), np.int64(10), np.int64(414), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:37 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:37 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:37 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:37 DEBUG opendrift:2095: ======================================================================
09:59:37 INFO opendrift:2096: 2025-06-18 07:58:03.273845 - step 93 of 96 - 499 active elements (1 deactivated)
09:59:37 DEBUG opendrift:2102: 0 elements scheduled.
09:59:37 DEBUG opendrift:2104: ======================================================================
09:59:37 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.75609642824984
09:59:37 DEBUG opendrift:2115: 10.526867588957122 <- longitude -> 10.954211075122174
09:59:37 DEBUG opendrift:2115: -37.143497467041016 <- z -> 0.0
09:59:37 DEBUG opendrift:2116: ---------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 499 elements
09:59:37 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 07:00:00 (before)
2025-06-18 08:00:00 (after)
09:59:37 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 07:00:00) in space (linearNDFast)
09:59:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:37 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 08:00:00) in space (linearNDFast)
09:59:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:37 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 07:00:00, weight 0.03) and
after (2025-06-18 08:00:00, weight 0.97) in time
09:59:37 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04579993564066 degrees.
09:59:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04579993564066 degrees.
09:59:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 499 elements
09:59:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 499 elements
09:59:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:37 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:37 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:37 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:37 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.17137 (min) 0.219349 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.397992 (min) 0.262739 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0309493 (min) -0.0055469 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.90524 (min) 8.72608 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.61173 (min) -2.58804 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 41.8641 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.9541 (min) 14.4527 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.7357 (min) 33.2108 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000297699 (min) 0.000523222 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:37 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:37 DEBUG opendrift:671: No elements hit coastline.
09:59:37 DEBUG opendrift:702: No elements hit seafloor.
09:59:37 DEBUG opendrift:1720: No elements to deactivate
09:59:37 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:37 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:37 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:37 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 0
09:59:37 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:37 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.06392097906673966
09:59:37 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:37 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:37 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 7 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:37 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:37 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:37 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:37 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:37 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:37 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(75), np.int64(0), np.int64(10), np.int64(414), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:37 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:37 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:37 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:37 DEBUG opendrift:2095: ======================================================================
09:59:37 INFO opendrift:2096: 2025-06-18 08:28:03.273845 - step 94 of 96 - 499 active elements (1 deactivated)
09:59:37 DEBUG opendrift:2102: 0 elements scheduled.
09:59:37 DEBUG opendrift:2104: ======================================================================
09:59:37 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.75438502640121
09:59:37 DEBUG opendrift:2115: 10.52686758895712 <- longitude -> 10.957466169719098
09:59:37 DEBUG opendrift:2115: -37.143497467041016 <- z -> -0.05085741461061932
09:59:37 DEBUG opendrift:2116: ---------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 499 elements
09:59:37 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 08:00:00 (before)
2025-06-18 09:00:00 (after)
09:59:39 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:39 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:39 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:39 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:39 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:39 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:39 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 61x41x7) for time after (2025-06-18 09:00:00)
09:59:39 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 08:00:00) in space (linearNDFast)
09:59:39 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:39 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 09:00:00) in space (linearNDFast)
09:59:39 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:39 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 08:00:00, weight 0.53) and
after (2025-06-18 09:00:00, weight 0.47) in time
09:59:39 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:39 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04254484762001 degrees.
09:59:39 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.04254484762001 degrees.
09:59:39 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:39 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:39 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:39 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:39 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 499 elements
09:59:39 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:39 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:39 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:39 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:39 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:39 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:39 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 499 elements
09:59:39 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:39 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:39 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:39 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:39 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:39 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:39 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:39 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:39 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:39 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:39 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.149746 (min) 0.217879 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.385481 (min) 0.227849 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0245945 (min) 0.00466597 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.51982 (min) 9.12884 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.11579 (min) -2.31632 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 41.4784 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.9645 (min) 14.5374 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.3039 (min) 33.2526 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00023762 (min) 0.000475036 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:39 DEBUG opendrift:671: No elements hit coastline.
09:59:39 DEBUG opendrift:702: No elements hit seafloor.
09:59:39 DEBUG opendrift:1720: No elements to deactivate
09:59:39 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:39 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:39 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:39 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 1
09:59:39 DEBUG opendrift.models.chemicaldrift:1476: old species: [3]
09:59:39 DEBUG opendrift.models.chemicaldrift:1477: new species: [0]
09:59:39 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 441. 0.]
[ 0. 0. 0. 0. 0.]
[ 26. 0. 0. 75. 0.]
[ 42. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:39 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:39 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:39 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:39 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:39 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.06612755747501935
09:59:39 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:39 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:39 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:39 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:39 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:39 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:39 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:39 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:39 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(76), np.int64(0), np.int64(10), np.int64(413), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:39 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:39 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:39 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:39 DEBUG opendrift:2095: ======================================================================
09:59:39 INFO opendrift:2096: 2025-06-18 08:58:03.273845 - step 95 of 96 - 499 active elements (1 deactivated)
09:59:39 DEBUG opendrift:2102: 0 elements scheduled.
09:59:39 DEBUG opendrift:2104: ======================================================================
09:59:39 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.752247409243026
09:59:39 DEBUG opendrift:2115: 10.526867588957117 <- longitude -> 10.958754161584055
09:59:39 DEBUG opendrift:2115: -37.143497467041016 <- z -> -0.25548536989121395
09:59:39 DEBUG opendrift:2116: ---------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:39 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:39 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:39 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 499 elements
09:59:39 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 08:00:00 (before)
2025-06-18 09:00:00 (after)
09:59:39 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 08:00:00) in space (linearNDFast)
09:59:39 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:39 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 09:00:00) in space (linearNDFast)
09:59:39 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:39 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 08:00:00, weight 0.03) and
after (2025-06-18 09:00:00, weight 0.97) in time
09:59:39 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:39 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.041256849802494 degrees.
09:59:39 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.041256849802494 degrees.
09:59:39 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:39 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:39 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:39 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:39 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 499 elements
09:59:39 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:39 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:39 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:39 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:39 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:39 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:39 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 499 elements
09:59:39 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:39 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:39 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:39 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:39 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:39 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:39 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:39 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:39 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:39 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:39 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.21233 (min) 0.228553 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.412841 (min) 0.192676 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0190819 (min) 0.0141533 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.12626 (min) 9.57589 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.17417 (min) -1.89436 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 41.0251 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.9745 (min) 14.6198 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.7715 (min) 33.2928 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000217913 (min) 0.000510933 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:39 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:39 DEBUG opendrift:671: No elements hit coastline.
09:59:39 DEBUG opendrift:702: No elements hit seafloor.
09:59:39 DEBUG opendrift:1720: No elements to deactivate
09:59:39 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:39 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:39 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:39 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 2
09:59:39 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 3]
09:59:39 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 0]
09:59:39 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 442. 0.]
[ 0. 0. 0. 0. 0.]
[ 26. 0. 0. 75. 0.]
[ 43. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:39 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:39 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:39 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:39 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:39 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.06993333435429683
09:59:39 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:39 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:39 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:59:39 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 4 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:39 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:39 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:39 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:39 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:39 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:39 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(76), np.int64(0), np.int64(10), np.int64(413), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:39 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:39 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:39 DEBUG opendrift:842: to be seeded: 0, already seeded 500
09:59:39 DEBUG opendrift:2095: ======================================================================
09:59:39 INFO opendrift:2096: 2025-06-18 09:28:03.273845 - step 96 of 96 - 499 active elements (1 deactivated)
09:59:39 DEBUG opendrift:2102: 0 elements scheduled.
09:59:39 DEBUG opendrift:2104: ======================================================================
09:59:39 DEBUG opendrift:2115: 57.545777775582295 <- latitude -> 57.74994690686308
09:59:39 DEBUG opendrift:2115: 10.526867588957113 <- longitude -> 10.959049487506181
09:59:39 DEBUG opendrift:2115: -37.143497467041016 <- z -> 0.0
09:59:39 DEBUG opendrift:2116: ---------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
09:59:39 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
09:59:39 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:39 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:39 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 499 elements
09:59:39 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-06-18 09:00:00 (before)
2025-06-18 10:00:00 (after)
09:59:41 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
09:59:41 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
09:59:41 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
09:59:41 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
09:59:41 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
09:59:41 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['sea_water_temperature', 'sea_water_salinity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'upward_sea_water_velocity']
09:59:41 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 61x41x7) for time after (2025-06-18 10:00:00)
09:59:41 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-06-18 09:00:00) in space (linearNDFast)
09:59:41 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:41 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-06-18 10:00:00) in space (linearNDFast)
09:59:41 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
09:59:41 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-06-18 09:00:00, weight 0.53) and
after (2025-06-18 10:00:00, weight 0.47) in time
09:59:41 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
09:59:41 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.040961528809504 degrees.
09:59:41 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731434929146 and -59.040961528809504 degrees.
09:59:41 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:41 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:41 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
09:59:41 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:41 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
09:59:41 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:41 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:41 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 499 elements
09:59:41 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:41 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:41 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:41 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:41 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:41 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:41 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:41 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:41 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:41 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 499 elements
09:59:41 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:41 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:41 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:41 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:41 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:41 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:41 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
09:59:41 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
09:59:41 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
09:59:41 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
09:59:41 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:41 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.209588 (min) 0.232522 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.28921 (min) 0.160596 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0249721 (min) 0.0126637 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.89501 (min) 9.60661 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.34421 (min) -1.76536 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.556 (min) 40.5275 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 12.9843 (min) 14.6624 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 29.333 (min) 33.3298 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000262446 (min) 0.000507427 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:41 DEBUG opendrift:671: No elements hit coastline.
09:59:41 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:41 DEBUG opendrift:1720: No elements to deactivate
09:59:41 DEBUG opendrift:2150: Calling ChemicalDrift.update()
09:59:41 DEBUG opendrift.models.chemicaldrift:1691: Calculating overall degradation using overall rate constants
09:59:41 DEBUG opendrift.models.chemicaldrift:1748: Calculating: volatilization
09:59:41 INFO opendrift.models.chemicaldrift:1459: Number of transformations: 3
09:59:41 DEBUG opendrift.models.chemicaldrift:1476: old species: [0 0 2]
09:59:41 DEBUG opendrift.models.chemicaldrift:1477: new species: [3 3 0]
09:59:41 DEBUG opendrift.models.chemicaldrift:1484: Number of transformations total:
[[ 0. 0. 0. 444. 0.]
[ 0. 0. 0. 0. 0.]
[ 27. 0. 0. 75. 0.]
[ 43. 0. 61. 0. 0.]
[ 0. 0. 0. 0. 0.]]
09:59:41 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:41 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:41 DEBUG opendrift.models.chemicaldrift:1528: Adding uncertainty for desorption from sediments: 0.5 m
09:59:41 DEBUG opendrift.models.oceandrift:436: Using functional expression for diffusivity
09:59:41 DEBUG opendrift.models.oceandrift:441: Diffusivities are in range 0.0 to 0.069615459006744
09:59:41 DEBUG opendrift.models.oceandrift:460: TSprofiles deactivated for vertical mixing
09:59:41 DEBUG opendrift.models.oceandrift:474: Vertical mixing module:windspeed_Large1994
09:59:41 DEBUG opendrift.models.oceandrift:477: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
09:59:41 DEBUG opendrift.models.oceandrift:544: 1 elements reached seafloor, interacting with bottom
09:59:41 DEBUG opendrift:707: Lifting 1 elements to seafloor.
09:59:41 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 6 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 2 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 3 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:41 DEBUG opendrift.models.oceandrift:524: 1 elements penetrated seafloor, lifting up
09:59:41 INFO opendrift.models.chemicaldrift:1657: Number of resuspended particles: 0
09:59:41 DEBUG opendrift.models.chemicaldrift:1662: Adding uncertainty for resuspension from sediments: 0.5 m
09:59:41 DEBUG opendrift.models.chemicaldrift:1563: Updated particle diameter for 0 elements
09:59:41 DEBUG opendrift.models.chemicaldrift:1567: Adding uncertainty for particle diameter: 5e-06 m
09:59:41 INFO opendrift.models.chemicaldrift:1887: partitioning: [np.int64(75), np.int64(0), np.int64(9), np.int64(415), np.int64(0)] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
09:59:41 DEBUG opendrift.models.oceandrift:310: Vertical advection, including elements at surface
09:59:41 DEBUG opendrift:1671: Horizontal diffusivity is 0, no random walk.
09:59:41 DEBUG opendrift:2188: Cleaning up
09:59:41 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
09:59:41 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
09:59:41 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
09:59:41 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
09:59:41 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
09:59:41 DEBUG opendrift.models.basemodel.environment:614: Data needed for 499 elements
09:59:41 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 499 elements
09:59:41 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
09:59:41 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
09:59:41 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
09:59:41 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
09:59:41 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
09:59:41 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
09:59:41 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
09:59:41 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
09:59:41 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
09:59:41 DEBUG opendrift:671: No elements hit coastline.
09:59:41 DEBUG opendrift:2274: Updating minval and maxval
09:59:42 DEBUG opendrift:2354: Writing to file
09:59:42 DEBUG opendrift:1720: No elements to deactivate
09:59:42 DEBUG opendrift:100: Changed mode from Mode.Run to Mode.Result
Print and plot results
print('Final speciation:')
for isp,sp in enumerate(o.name_species):
print ('{:32}: {:>6}'.format(sp,sum(o.elements.specie==isp)))
print('Number of transformations:')
for isp in range(o.nspecies):
print('{}'.format(['{:>9}'.format(np.int32(item)) for item in o.ntransformations[isp,:]]) )
m_pre = o.result.mass.isel(time=-1).sum()
m_deg = o.result.mass_degraded.isel(time=-1).sum()
m_vol = o.result.mass_volatilized.isel(time=-1).sum()
m_tot = m_pre + m_deg + m_vol
print('Mass budget for target chemical:')
print('mass preserved : {:.3f}'.format(m_pre * 1e-6),' g {:.3f}'.format(m_pre/m_tot*100),'%')
print('mass degraded : {:.3f}'.format(m_deg * 1e-6),' g {:.3f}'.format(m_deg/m_tot*100),'%')
print('mass volatilized : {:.3f}'.format(m_vol * 1e-6),' g {:.3f}'.format(m_vol/m_tot*100),'%')
legend=['dissolved', '', 'SPM', 'sediment', '']
o.animation_profile(color='specie',
markersize='mass',
markersize_scaling=30,
alpha=.5,
vmin=0,vmax=o.nspecies-1,
legend = legend,
legend_loc = 3,
fps = 10
)
Final speciation:
LMM : 75
Humic colloid : 0
Particle reversible : 9
Sediment reversible : 415
Sediment slowly reversible : 0
Number of transformations:
[' 0', ' 0', ' 0', ' 444', ' 0']
[' 0', ' 0', ' 0', ' 0', ' 0']
[' 27', ' 0', ' 0', ' 75', ' 0']
[' 43', ' 0', ' 61', ' 0', ' 0']
[' 0', ' 0', ' 0', ' 0', ' 0']
Mass budget for target chemical:
mass preserved : 0.251 g 25.139 %
mass degraded : 0.743 g 74.460 %
mass volatilized : 0.004 g 0.401 %
09:59:42 DEBUG opendrift:3062: Saving animation..
09:59:42 INFO opendrift:4607: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_0.gif...
09:59:57 DEBUG opendrift:4645: MPLBACKEND = agg
09:59:57 DEBUG opendrift:4646: DISPLAY = None
09:59:57 DEBUG opendrift:4647: Time to save animation: 0:00:15.270028
09:59:57 INFO opendrift:3265: Time to make animation: 0:00:15.404500
o.animation(color='specie',
markersize='mass',
markersize_scaling=100,
alpha=.5,
vmin=0,vmax=o.nspecies-1,
colorbar=False,
fast = True,
legend = legend,
legend_loc = 3,
fps=10
)
09:59:57 DEBUG opendrift:2421: Setting up map: corners=None, fast=True, lscale=None
09:59:57 WARNING opendrift:2452: Plotting fast. This will make your plots less accurate.
09:59:58 DEBUG opendrift:3062: Saving animation..
09:59:58 INFO opendrift:4607: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_1.gif...
10:00:55 DEBUG opendrift:4645: MPLBACKEND = agg
10:00:55 DEBUG opendrift:4646: DISPLAY = None
10:00:55 DEBUG opendrift:4647: Time to save animation: 0:00:57.312445
10:00:55 INFO opendrift:3055: Time to make animation: 0:00:58.398207
o.plot_mass(legend = legend,
time_unit = 'hours',
title = 'Chemical mass budget')
dissolved : 0.021603800356388092g (8.610935470777534%)
SPM : 0.009374208748340607g (3.7364123575457246%)
sediment : 0.21990995109081268g (87.65265217167675%)
/root/project/opendrift/models/chemicaldrift.py:3369: UserWarning: set_ticklabels() should only be used with a fixed number of ticks, i.e. after set_ticks() or using a FixedLocator.
ax.axes.get_xaxis().set_ticklabels(np.round(ax.axes.get_xticks() * time_conversion_factor))
Total running time of the script: (3 minutes 1.372 seconds)