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ChemicalDrift - Transport and fate of organic compounds
from opendrift.readers import reader_netCDF_CF_generic
from opendrift.models.chemicaldrift import ChemicalDrift
from opendrift.readers.reader_constant import Reader as ConstantReader
from datetime import timedelta, datetime
import matplotlib.pyplot as plt
import numpy as np
o = ChemicalDrift(loglevel=0, seed=0)
# Norkyst
reader_norkyst = reader_netCDF_CF_generic.Reader('https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be')
mixed_layer = ConstantReader({'ocean_mixed_layer_thickness': 40})
o.add_reader([reader_norkyst,mixed_layer])
o.set_config('drift:vertical_mixing', True)
o.set_config('vertical_mixing:diffusivitymodel', 'windspeed_Large1994')
o.set_config('chemical:particle_diameter',30.e-6) # m
o.set_config('chemical:particle_diameter_uncertainty',5.e-6) # m
o.set_config('chemical:sediment:resuspension_critvel',0.15) # m/s
o.set_config('chemical:transformations:volatilization', True)
o.set_config('chemical:transformations:degradation', True)
o.set_config('chemical:transformations:degradation_mode', 'OverallRateConstants')
o.set_config('seed:LMM_fraction',.9)
o.set_config('seed:particle_fraction',.1)
o.set_config('general:coastline_action', 'previous')
o.init_chemical_compound("Phenanthrene")
# Modify half-life times with unrealistic values for this demo
o.set_config('chemical:transformations:t12_W_tot', 6.) # hours
o.set_config('chemical:transformations:t12_S_tot', 12.) # hours
o.list_configspec()
15:20:50 DEBUG opendrift.config:168: Adding 18 config items from __init__
15:20:50 DEBUG opendrift.config:178: Overwriting config item readers:max_number_of_fails
15:20:50 DEBUG opendrift.config:168: Adding 13 config items from __init__
15:20:50 INFO opendrift:509: OpenDriftSimulation initialised (version 1.13.1 / v1.13.1-12-gca7f755)
15:20:50 DEBUG opendrift.config:168: Adding 15 config items from oceandrift
15:20:50 DEBUG opendrift.config:178: Overwriting config item seed:z
15:20:50 DEBUG opendrift.config:168: Adding 71 config items from chemicaldrift
15:20:50 INFO opendrift.readers:61: Opening file with xr.open_dataset
15:20:53 DEBUG opendrift.readers.reader_netCDF_CF_generic:128: Finding coordinate variables.
15:20:53 DEBUG opendrift.readers.reader_netCDF_CF_generic:143: Parsing CF grid mapping dictionary: {'grid_mapping_name': 'polar_stereographic', 'straight_vertical_longitude_from_pole': 70.0, 'latitude_of_projection_origin': 90.0, 'standard_parallel': 60.0, 'false_easting': 3192800.0, 'false_northing': 1784000.0, 'semi_major_axis': 6378137.0, 'semi_minor_axis': 6356752.3142, 'proj4': '+proj=stere +lat_0=90 +lat_ts=60 +lon_0=70 +x_0=3192800 +y_0=1784000 +a=6378137 +b=6356752.3142 +units=m +no_defs +type=crs'}
15:20:53 INFO opendrift.readers.reader_netCDF_CF_generic:332: Detected dimensions: {'x': 'X', 'y': 'Y', 'z': 'depth', 'time': 'time'}
15:20:53 DEBUG opendrift.readers.reader_netCDF_CF_generic:368: Skipped variables without standard_name: ['angle', 'tke', 'ubar', 'vbar']
15:20:53 DEBUG opendrift.readers.basereader.variables:612: Setting buffer size 25 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 5 m/s and time span of 1:00:00
15:20:53 DEBUG opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
15:20:53 DEBUG opendrift.readers.basereader.variables:567: Adding variable mapping: ['x_wind', 'y_wind'] -> wind_speed
15:20:53 DEBUG opendrift.readers.basereader.variables:567: Adding variable mapping: ['x_sea_water_velocity', 'y_sea_water_velocity'] -> sea_water_speed
15:20:53 DEBUG opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
15:20:53 DEBUG opendrift.models.basemodel.environment:312: Added reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:20:53 DEBUG opendrift.models.basemodel.environment:312: Added reader constant_reader
environment:constant:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:sea_surface_height [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_surface_height [0] float min: None, max: None [None] Fallback value for s...
environment:constant:x_wind [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:x_wind [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:y_wind [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:y_wind [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:fallback:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:constant:sea_floor_depth_below_sea_level [None] float min: -20, max: 12000 [None] Depth of seafloor...
environment:fallback:sea_floor_depth_below_sea_level [10000] float min: -20, max: 12000 [None] Depth of seafloor...
environment:constant:ocean_vertical_diffusivity [None] float min: 0, max: 1 [None] Use constant value f...
environment:fallback:ocean_vertical_diffusivity [0.0001] float min: 0, max: 1 [None] Fallback value for o...
environment:constant:sea_water_temperature [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_temperature [10] float min: None, max: None [None] Fallback value for s...
environment:constant:sea_water_salinity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_salinity [34] float min: None, max: None [None] Fallback value for s...
environment:constant:upward_sea_water_velocity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:upward_sea_water_velocity [0] float min: None, max: None [None] Fallback value for u...
environment:constant:spm [None] float min: None, max: None [None] Use constant value f...
environment:fallback:spm [1] float min: None, max: None [None] Fallback value for s...
environment:constant:ocean_mixed_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:ocean_mixed_layer_thickness [50] float min: None, max: None [None] Fallback value for o...
environment:constant:active_sediment_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:active_sediment_layer_thickness [0.03] float min: None, max: None [None] Fallback value for a...
environment:constant:doc [None] float min: None, max: None [None] Use constant value f...
environment:fallback:doc [0.0] float min: None, max: None [None] Fallback value for d...
environment:constant:sea_water_ph_reported_on_total_scale [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_ph_reported_on_total_scale [8.1] float min: None, max: None [None] Fallback value for s...
environment:constant:pH_sediment [None] float min: None, max: None [None] Use constant value f...
environment:fallback:pH_sediment [6.9] float min: None, max: None [None] Fallback value for p...
general:use_auto_landmask [True] bool A built-in GSHHG glo...
drift:current_uncertainty [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:current_uncertainty_uniform [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:max_speed [2.0] float min: 0, max: inf [seconds] Typical maximum spee...
readers:max_number_of_fails [1] int min: 0, max: 1000000.0 [number] Readers are discarde...
general:simulation_name [] str min length 0, max length 64 Name of simulation...
general:coastline_action [previous] enum ['none', 'stranding', 'previous'] None means that obje...
general:coastline_approximation_precision [0.001] float min: 0.0001, max: 0.005 [degrees] The precision of the...
general:time_step_minutes [60] float min: 0.01, max: 1440 [minutes] Calculation time ste...
general:time_step_output_minutes [None] float min: 1, max: 1440 [minutes] Output time step, i....
seed:ocean_only [True] bool If True, elements se...
seed:number [1] int min: 1, max: 100000000 [1] The number of elemen...
drift:max_age_seconds [None] float min: 0, max: inf [seconds] Elements will be dea...
drift:advection_scheme [euler] enum ['euler', 'runge-kutta', 'runge-kutta4'] Numerical advection ...
drift:horizontal_diffusivity [0] float min: 0, max: 100000 [m2/s] Add horizontal diffu...
drift:profiles_depth [50] float min: 0, max: None [meters] Environment profiles...
drift:wind_uncertainty [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:relative_wind [False] bool If True, wind drift ...
drift:deactivate_north_of [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_south_of [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_east_of [None] float min: -360, max: 360 [degrees] Elements are deactiv...
drift:deactivate_west_of [None] float min: -360, max: 360 [degrees] Elements are deactiv...
seed:origin_marker [0] float min: None, max: None [None] An integer kept cons...
seed:z [0] float min: -10000, max: 0 [m] Depth below sea leve...
seed:wind_drift_factor [0.02] float min: None, max: None [1] Elements at surface ...
seed:current_drift_factor [1] float min: None, max: None [1] Elements are moved w...
seed:terminal_velocity [0.0] float min: None, max: None [m/s] Terminal rise/sinkin...
seed:diameter [0.0] float min: None, max: None [m] Seeding value of dia...
seed:density [2650.0] float min: None, max: None [kg/m^3] Seeding value of den...
seed:specie [0] float min: None, max: None [] Seeding value of spe...
seed:mass [1000.0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_water [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_sediment [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_volatilized [0] float min: None, max: None [ug] Seeding value of mas...
drift:vertical_advection [True] bool Advect elements with...
drift:vertical_mixing [True] bool Activate vertical mi...
vertical_mixing:timestep [60] float min: 0.1, max: 3600 [seconds] Time step used for i...
vertical_mixing:diffusivitymodel [windspeed_Large1994] enum ['environment', 'stepfunction', 'windspeed_Sundby1983', 'windspeed_Large1994', 'gls_tke', 'constant'] Algorithm/source use...
vertical_mixing:background_diffusivity [1.2e-05] float min: 0, max: 1 [m2s-1] Background diffusivi...
vertical_mixing:TSprofiles [False] bool Update T and S profi...
drift:wind_drift_depth [0.1] float min: 0, max: 10 [meters] The direct wind drif...
drift:stokes_drift [True] bool Advection elements w...
drift:stokes_drift_profile [Phillips] enum ['monochromatic', 'exponential', 'Phillips', 'windsea_swell'] Algorithm to calcula...
drift:use_tabularised_stokes_drift [False] bool If True, Stokes drif...
drift:tabularised_stokes_drift_fetch [25000] enum ['5000', '25000', '50000'] The fetch length whe...
general:seafloor_action [lift_to_seafloor] enum ['none', 'lift_to_seafloor', 'deactivate', 'previous'] "deactivate": elemen...
drift:truncate_ocean_model_below_m [None] float min: 0, max: 10000 [m] Ocean model data are...
seed:seafloor [False] bool Elements are seeded ...
chemical:transfer_setup [organics] enum ['Sandnesfj_Al', 'metals', '137Cs_rev', 'custom', 'organics'] ...
chemical:dynamic_partitioning [True] bool Toggle dynamic parti...
chemical:slowly_fraction [False] bool ...
chemical:irreversible_fraction [False] bool ...
chemical:dissolved_diameter [0] float min: 0, max: 0.0001 [m] ...
chemical:particle_diameter [3e-05] float min: 0, max: 0.0001 [m] ...
chemical:particle_concentration_half_depth [20] float min: 0, max: 100 [m] ...
chemical:doc_concentration_half_depth [1000] float min: 0, max: 1000 [m] ...
chemical:particle_diameter_uncertainty [5e-06] float min: 0, max: 0.0001 [m] ...
seed:LMM_fraction [0.9] float min: 0, max: 1 [] ...
seed:particle_fraction [0.1] float min: 0, max: 1 [] ...
chemical:species:LMM [True] bool Toggle LMM species...
chemical:species:LMMcation [False] bool ...
chemical:species:LMManion [False] bool ...
chemical:species:Colloid [False] bool ...
chemical:species:Humic_colloid [False] bool ...
chemical:species:Polymer [False] bool ...
chemical:species:Particle_reversible [True] bool ...
chemical:species:Particle_slowly_reversible [False] bool ...
chemical:species:Particle_irreversible [False] bool ...
chemical:species:Sediment_reversible [True] bool ...
chemical:species:Sediment_slowly_reversible [False] bool ...
chemical:species:Sediment_irreversible [False] bool ...
chemical:transformations:Kd [2.0] float min: 0, max: 1000000000.0 [m3/kg] ...
chemical:transformations:S0 [0.0] float min: 0, max: 100 [PSU] parameter controllin...
chemical:transformations:Dc [1.16e-05] float min: 0, max: 1000000.0 [] ...
chemical:transformations:slow_coeff [0] float min: 0, max: 1000000.0 [] ...
chemical:transformations:volatilization [True] bool Chemical is evaporat...
chemical:transformations:degradation [True] bool Chemical mass is deg...
chemical:transformations:degradation_mode [OverallRateConstants] enum ['OverallRateConstants'] ...
chemical:transformations:dissociation [nondiss] enum ['nondiss', 'acid', 'base', 'amphoter'] ...
chemical:transformations:LogKOW [4.505] float min: -3, max: 10 [Log L/Kg] ...
chemical:transformations:TrefKOW [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_KOC_Sed [-24900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:DeltaH_KOC_DOM [-25900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:Setchenow [0.3026] float min: 0, max: 1 [L/mol] ...
chemical:transformations:pKa_acid [-1] float min: -1, max: 14 [] ...
chemical:transformations:pKa_base [-1] float min: -1, max: 14 [] ...
chemical:transformations:KOC_DOM [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:KOC_sed [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:fOC_SPM [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:fOC_sed [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:aggregation_rate [0] float min: 0, max: 1 [s-1] ...
chemical:transformations:t12_W_tot [6.0] float min: 1, max: None [hours] half life in water, ...
chemical:transformations:Tref_kWt [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kWt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:t12_S_tot [12.0] float min: 1, max: None [hours] half life in sedimen...
chemical:transformations:Tref_kSt [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kSt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:MolWt [178.226] float min: 50, max: 1000 [amu] molecular weight...
chemical:transformations:Henry [4.294e-05] float min: None, max: None [atm m3 mol-1] Henry constant...
chemical:transformations:Vpress [0.0222] float min: None, max: None [Pa] Vapour pressure...
chemical:transformations:Tref_Vpress [25.0] float min: None, max: None [C] Vapour pressure ref ...
chemical:transformations:DeltaH_Vpress [71733.0] float min: -100000.0, max: 115000.0 [J/mol] Enthalpy of volatili...
chemical:transformations:Solub [1.09] float min: None, max: None [g/m3] Solubility...
chemical:transformations:Tref_Solub [25.0] float min: None, max: None [C] Solubility ref temp...
chemical:transformations:DeltaH_Solub [34800.0] float min: -100000.0, max: 100000.0 [J/mol] Enthalpy of solubili...
chemical:sediment:mixing_depth [0.03] float min: 0, max: 100 [m] ...
chemical:sediment:density [2600] float min: 0, max: 10000 [kg/m3] ...
chemical:sediment:effective_fraction [0.9] float min: 0, max: 1 [] ...
chemical:sediment:corr_factor [0.1] float min: 0, max: 10 [] ...
chemical:sediment:porosity [0.6] float min: 0, max: 1 [] ...
chemical:sediment:layer_thickness [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth [1] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_critvel [0.15] float min: 0, max: 1 [m/s] ...
chemical:sediment:burial_rate [3e-05] float min: 0, max: 10 [m/year] ...
chemical:sediment:buried_leaking_rate [0] float min: 0, max: 10 [s-1] ...
chemical:compound [Phenanthrene] enum ['Naphthalene', 'Phenanthrene', 'Fluoranthene', 'Benzo-a-anthracene', 'Benzo-a-pyrene', 'Dibenzo-ah-anthracene', 'C1-Naphthalene', 'Acenaphthene', 'Acenaphthylene', 'Fluorene', 'Dibenzothiophene', 'C2-Naphthalene', 'Anthracene', 'C3-Naphthalene', 'C1-Dibenzothiophene', 'Pyrene', 'C1-Phenanthrene', 'C2-Dibenzothiophene', 'C2-Phenanthrene', 'Benzo-b-fluoranthene', 'Chrysene', 'C3-Dibenzothiophene', 'C3-Phenanthrene', 'Benzo-k-fluoranthene', 'Benzo-ghi-perylene', 'Indeno-123cd-pyrene', 'Copper', 'Cadmium', 'Chromium', 'Lead', 'Vanadium', 'Zinc', 'Nickel', None] ...
Seeding 500 lagrangian elements each representign 2mg og target chemical
td=datetime.today()
time = td - timedelta(days=10)
latseed= 57.6; lonseed= 10.6 # Skagen
ntraj=500
iniz=np.random.rand(ntraj) * -10. # seeding the chemicals in the upper 10m
o.seed_elements(lonseed, latseed, z=iniz, radius=2000,number=ntraj,time=time, mass=2e3)
15:20:53 DEBUG opendrift.models.chemicaldrift:870: Partitioning coefficients (Tref,freshwater)
15:20:53 DEBUG opendrift.models.chemicaldrift:871: KOC_sed: 12953.922406542462 L/KgOC
15:20:53 DEBUG opendrift.models.chemicaldrift:872: KOC_SPM: 12953.922406542462 L/KgOC
15:20:53 DEBUG opendrift.models.chemicaldrift:873: KOC_DOM: 3004.29439651874 L/KgOC
15:20:53 DEBUG opendrift.models.chemicaldrift:885: Kd_sed: 647.6961203271231 L/Kg
15:20:53 DEBUG opendrift.models.chemicaldrift:886: Kd_SPM: 647.6961203271231 L/Kg
15:20:53 DEBUG opendrift.models.chemicaldrift:887: Kd_DOM: 1580.2588525688573 L/Kg
15:20:53 DEBUG opendrift.models.chemicaldrift:1104: nspecies: 5
15:20:53 DEBUG opendrift.models.chemicaldrift:1105: Transfer rates:
[[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
0.00000000e+00]
[4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]
[9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]
[9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
3.16887646e-11]
[0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]]
15:20:53 DEBUG opendrift.models.chemicaldrift:509: Initial partitioning:
15:20:53 DEBUG opendrift.models.chemicaldrift:511: 449 0 LMM
15:20:53 DEBUG opendrift.models.chemicaldrift:511: 0 1 Humic colloid
15:20:53 DEBUG opendrift.models.chemicaldrift:511: 51 2 Particle reversible
15:20:53 DEBUG opendrift.models.chemicaldrift:511: 0 3 Sediment reversible
15:20:53 DEBUG opendrift.models.chemicaldrift:511: 0 4 Sediment slowly reversible
15:20:53 INFO opendrift.models.basemodel.environment:206: Adding a global landmask from GSHHG
15:20:53 DEBUG opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
15:20:57 DEBUG opendrift.models.basemodel.environment:312: Added reader global_landmask
15:20:57 INFO opendrift.models.basemodel.environment:229: Fallback values will be used for the following variables which have no readers:
15:20:57 INFO opendrift.models.basemodel.environment:232: ocean_vertical_diffusivity: 0.000100
15:20:57 INFO opendrift.models.basemodel.environment:232: spm: 1.000000
15:20:57 INFO opendrift.models.basemodel.environment:232: active_sediment_layer_thickness: 0.030000
15:20:57 INFO opendrift.models.basemodel.environment:232: doc: 0.000000
15:20:57 INFO opendrift.models.basemodel.environment:232: sea_water_ph_reported_on_total_scale: 8.100000
15:20:57 INFO opendrift.models.basemodel.environment:232: pH_sediment: 6.900000
15:20:57 DEBUG opendrift:100: Changed mode from Mode.Config to Mode.Ready
Running model
o.run(steps=48*2, time_step=1800, time_step_output=1800)
15:20:57 DEBUG opendrift:100: Changed mode from Mode.Ready to Mode.Run
15:20:57 DEBUG opendrift:1763:
------------------------------------------------------
Software and hardware:
OpenDrift version 1.13.1
Platform: Linux, 6.8.0-1024-aws
4.0 GB memory
36 processors (x86_64)
NumPy version 1.26.4
SciPy version 1.15.2
Matplotlib version 3.9.1
NetCDF4 version 1.6.1
Xarray version 2025.3.0
ADIOS (adios_db) version 1.2.5
Copernicusmarine version 2.0.1
Python version 3.11.6 | packaged by conda-forge | (main, Oct 3 2023, 10:40:35) [GCC 12.3.0]
------------------------------------------------------
15:20:57 DEBUG opendrift:1777: No output file is specified, neglecting export_buffer_length
15:20:57 DEBUG opendrift:1895: Finalizing environment and preparing readers for simulation coverage ([4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]) and time (2025-03-24 15:20:53.643886 to 2025-03-26 15:20:53.643886)
15:20:57 DEBUG opendrift.models.basemodel.environment:168: Preparing https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]
15:20:57 DEBUG opendrift.readers.basereader.structured:153: Clearing cache for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be before starting new simulation
15:20:57 DEBUG opendrift.readers.basereader.variables:612: Setting buffer size 11 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 2 m/s and time span of 1:00:00
15:20:57 DEBUG opendrift.readers.basereader.variables:553: Nothing more to prepare for https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:20:57 DEBUG opendrift.models.basemodel.environment:168: Preparing constant_reader for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]
15:20:57 DEBUG opendrift.readers.basereader.variables:553: Nothing more to prepare for constant_reader
15:20:57 DEBUG opendrift.models.basemodel.environment:168: Preparing global_landmask for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]
15:20:57 DEBUG opendrift.readers.basereader.variables:553: Nothing more to prepare for global_landmask
15:20:57 DEBUG opendrift:1982: Initial self.result, size Frozen({'trajectory': 500, 'time': 97})
15:20:57 INFO opendrift:919: Using existing reader for land_binary_mask
15:20:57 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:20:57 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:20:57 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:20:57 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:20:57 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:20:57 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:20:57 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:20:57 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:20:57 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:20:57 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:20:57 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:20:57 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:20:57 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:20:57 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:20:57 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:20:57 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:20:57 INFO opendrift:930: All points are in ocean
15:20:57 INFO opendrift.models.chemicaldrift:352: Number of species: 5
15:20:57 INFO opendrift.models.chemicaldrift:354: 0 LMM
15:20:57 INFO opendrift.models.chemicaldrift:354: 1 Humic colloid
15:20:57 INFO opendrift.models.chemicaldrift:354: 2 Particle reversible
15:20:57 INFO opendrift.models.chemicaldrift:354: 3 Sediment reversible
15:20:57 INFO opendrift.models.chemicaldrift:354: 4 Sediment slowly reversible
15:20:57 INFO opendrift.models.chemicaldrift:357: transfer setup: organics
15:20:57 INFO opendrift.models.chemicaldrift:359: nspecies: 5
15:20:57 INFO opendrift.models.chemicaldrift:360: Transfer rates:
[[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
0.00000000e+00]
[4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]
[9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]
[9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
3.16887646e-11]
[0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
0.00000000e+00]]
15:20:57 DEBUG opendrift:874: to be seeded: 500, already seeded 0
15:20:57 DEBUG opendrift:892: Released 500 new elements.
15:20:57 WARNING opendrift:713: Seafloor check not being run because environment is missing. This will happen the first time the function is run but if it happens subsequently there is probably a problem.
15:20:57 DEBUG opendrift:2055: ======================================================================
15:20:57 INFO opendrift:2056: 2025-03-24 15:20:53.643886 - step 1 of 96 - 500 active elements (0 deactivated)
15:20:57 DEBUG opendrift:2062: 0 elements scheduled.
15:20:57 DEBUG opendrift:2064: ======================================================================
15:20:57 DEBUG opendrift:2075: 57.546223 <- latitude -> 57.64813
15:20:57 DEBUG opendrift:2080: 10.507113 <- longitude -> 10.70608
15:20:57 DEBUG opendrift:2085: -9.98847 <- z -> -0.046954762
15:20:57 DEBUG opendrift:2086: ---------------------------------
15:20:57 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:20:57 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:20:57 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:20:57 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:20:57 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:20:57 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:20:57 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:20:57 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 15:00:00 (before)
2025-03-24 16:00:00 (after)
15:21:00 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:00 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:00 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:00 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:00 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:00 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:00 DEBUG opendrift.readers.basereader.structured:292: Fetched env-block (size 37x35x7) for time before (2025-03-24 15:00:00)
15:21:02 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:02 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:02 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:02 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:02 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:02 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:02 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 37x35x7) for time after (2025-03-24 16:00:00)
15:21:02 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 15:00:00) in space (linearNDFast)
15:21:02 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:02 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 16:00:00) in space (linearNDFast)
15:21:02 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:02 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 15:00:00, weight 0.65) and
after (2025-03-24 16:00:00, weight 0.35) in time
15:21:02 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:02 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4929004930107 and -59.29392585710053 degrees.
15:21:02 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4929004930107 and -59.29392585710053 degrees.
15:21:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:02 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:02 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:02 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:02 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:02 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:02 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:02 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:02 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:02 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:02 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:02 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:02 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:02 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:02 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:02 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:02 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:02 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:02 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:02 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:02 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0540849 (min) 0.0916179 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0230302 (min) 0.216357 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.487407 (min) -0.458635 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: x_wind: -2.35127 (min) -0.799702 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.07487 (min) 4.13338 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.53077 (min) 23.882 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.48844 (min) 5.86459 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 23.7311 (min) 29.2008 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -5.88875e-05 (min) 2.31663e-05 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:02 DEBUG opendrift:694: No elements hit coastline.
15:21:02 DEBUG opendrift:733: No elements hit seafloor.
15:21:02 DEBUG opendrift:1695: No elements to deactivate
15:21:02 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:02 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
ret = ret.dtype.type(ret / rcount)
15:21:02 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:02 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:21:02 DEBUG opendrift.models.chemicaldrift:1452: old species: [2]
15:21:02 DEBUG opendrift.models.chemicaldrift:1453: new species: [0]
15:21:02 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[0. 0. 0. 0. 0.]
[0. 0. 0. 0. 0.]
[1. 0. 0. 0. 0.]
[0. 0. 0. 0. 0.]
[0. 0. 0. 0. 0.]]
15:21:02 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:02 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:02 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:02 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:02 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.014913515232752486
15:21:02 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:02 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:02 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:02 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:02 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:02 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:02 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:02 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:02 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:02 INFO opendrift.models.chemicaldrift:1861: partitioning: [450, 0, 49, 1, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:02 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:02 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:02 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:02 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:02 DEBUG opendrift:2055: ======================================================================
15:21:02 INFO opendrift:2056: 2025-03-24 15:50:53.643886 - step 2 of 96 - 500 active elements (0 deactivated)
15:21:02 DEBUG opendrift:2062: 0 elements scheduled.
15:21:02 DEBUG opendrift:2064: ======================================================================
15:21:02 DEBUG opendrift:2075: 57.54691842769119 <- latitude -> 57.651285030704244
15:21:02 DEBUG opendrift:2080: 10.508572710626263 <- longitude -> 10.70575304816584
15:21:02 DEBUG opendrift:2085: -20.12554742433434 <- z -> -0.09026506703246534
15:21:02 DEBUG opendrift:2086: ---------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:02 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:02 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:02 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:02 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 15:00:00 (before)
2025-03-24 16:00:00 (after)
15:21:02 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 15:00:00) in space (linearNDFast)
15:21:02 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:02 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 16:00:00) in space (linearNDFast)
15:21:02 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:02 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 15:00:00, weight 0.15) and
after (2025-03-24 16:00:00, weight 0.85) in time
15:21:02 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:02 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.49143838406269 and -59.294258009384755 degrees.
15:21:02 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.49143838406269 and -59.294258009384755 degrees.
15:21:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:02 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:02 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:02 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:02 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:02 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:02 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:02 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:02 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:02 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:02 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:02 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:02 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:02 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:02 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:02 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:02 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:02 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:02 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:02 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:02 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0490189 (min) 0.0906729 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0639664 (min) 0.264541 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.526016 (min) -0.496276 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: x_wind: -2.23509 (min) -0.652494 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.52134 (min) 5.33391 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.59495 (min) 23.6903 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.50389 (min) 6.08713 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 23.7415 (min) 32.7983 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -7.13438e-05 (min) 2.93637e-05 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:02 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:02 DEBUG opendrift:694: No elements hit coastline.
15:21:02 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:21:02 DEBUG opendrift:1695: No elements to deactivate
15:21:02 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:02 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:02 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:02 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 12
15:21:02 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0]
15:21:02 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3]
15:21:02 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 12. 0.]
[ 0. 0. 0. 0. 0.]
[ 1. 0. 0. 1. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:02 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:02 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:02 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:02 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:02 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.022514703567592848
15:21:02 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:02 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:02 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:02 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
15:21:02 DEBUG opendrift:738: Lifting 12 elements to seafloor.
15:21:02 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:02 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:02 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:02 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:02 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:02 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:02 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:02 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:02 INFO opendrift.models.chemicaldrift:1861: partitioning: [438, 0, 48, 14, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:02 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:02 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:02 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:02 DEBUG opendrift:738: Lifting 4 elements to seafloor.
15:21:02 DEBUG opendrift:2055: ======================================================================
15:21:02 INFO opendrift:2056: 2025-03-24 16:20:53.643886 - step 3 of 96 - 500 active elements (0 deactivated)
15:21:02 DEBUG opendrift:2062: 0 elements scheduled.
15:21:02 DEBUG opendrift:2064: ======================================================================
15:21:02 DEBUG opendrift:2075: 57.54963336383039 <- latitude -> 57.65487321126325
15:21:02 DEBUG opendrift:2080: 10.51004871406161 <- longitude -> 10.705524926399528
15:21:02 DEBUG opendrift:2085: -19.974651560939712 <- z -> -0.0968432979960544
15:21:02 DEBUG opendrift:2086: ---------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:02 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:02 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:02 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:02 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:02 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 16:00:00 (before)
2025-03-24 17:00:00 (after)
15:21:04 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:04 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:04 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:04 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:04 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:04 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:04 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 38x34x7) for time after (2025-03-24 17:00:00)
15:21:04 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 16:00:00) in space (linearNDFast)
15:21:04 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:04 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 17:00:00) in space (linearNDFast)
15:21:04 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:04 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 16:00:00, weight 0.65) and
after (2025-03-24 17:00:00, weight 0.35) in time
15:21:04 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:04 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.489962366163894 and -59.2944861357223 degrees.
15:21:04 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.489962366163894 and -59.2944861357223 degrees.
15:21:04 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:04 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:04 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:04 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:04 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:04 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:04 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:04 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:04 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:04 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:04 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:04 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:04 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:04 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:04 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:04 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:04 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:04 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:04 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:04 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:04 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:04 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:04 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0424035 (min) 0.116198 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.100061 (min) 0.284813 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.553597 (min) -0.522745 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: x_wind: -0.671749 (min) -0.016709 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.81026 (min) 5.50171 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.64182 (min) 23.4727 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.50902 (min) 6.0975 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 23.7465 (min) 32.8071 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -7.0508e-05 (min) 1.65068e-05 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:04 DEBUG opendrift:694: No elements hit coastline.
15:21:04 DEBUG opendrift:738: Lifting 18 elements to seafloor.
15:21:04 DEBUG opendrift:1695: No elements to deactivate
15:21:04 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:04 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:04 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:04 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 16
15:21:04 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
15:21:04 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
15:21:04 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 28. 0.]
[ 0. 0. 0. 0. 0.]
[ 1. 0. 0. 2. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:04 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:04 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:04 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:04 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:04 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.021906612243090748
15:21:04 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:04 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:04 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:04 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
15:21:04 DEBUG opendrift:738: Lifting 16 elements to seafloor.
15:21:04 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:04 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:04 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
15:21:04 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:04 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:04 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:04 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:04 INFO opendrift.models.chemicaldrift:1861: partitioning: [422, 0, 47, 31, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:04 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:04 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:04 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:04 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:04 DEBUG opendrift:2055: ======================================================================
15:21:04 INFO opendrift:2056: 2025-03-24 16:50:53.643886 - step 4 of 96 - 500 active elements (0 deactivated)
15:21:04 DEBUG opendrift:2062: 0 elements scheduled.
15:21:04 DEBUG opendrift:2064: ======================================================================
15:21:04 DEBUG opendrift:2075: 57.55247964585571 <- latitude -> 57.65914786440126
15:21:04 DEBUG opendrift:2080: 10.511591471678171 <- longitude -> 10.704606326635211
15:21:04 DEBUG opendrift:2085: -20.71019472755482 <- z -> -0.11114307070295004
15:21:04 DEBUG opendrift:2086: ---------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:04 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:04 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:04 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:04 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 16:00:00 (before)
2025-03-24 17:00:00 (after)
15:21:04 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 16:00:00) in space (linearNDFast)
15:21:04 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:04 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 17:00:00) in space (linearNDFast)
15:21:04 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:04 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 16:00:00, weight 0.15) and
after (2025-03-24 17:00:00, weight 0.85) in time
15:21:04 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:04 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488419608136375 and -59.29540473066236 degrees.
15:21:04 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.488419608136375 and -59.29540473066236 degrees.
15:21:04 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:04 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:04 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:04 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:04 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:04 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:04 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:04 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:04 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:04 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:04 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:04 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:04 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:04 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:04 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:04 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:04 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:04 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:04 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:04 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:04 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:04 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:04 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0410722 (min) 0.12509 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.10917 (min) 0.310423 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.576647 (min) -0.54517 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.10743 (min) 1.55555 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.0941811 (min) 5.85744 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.67559 (min) 23.2605 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.49569 (min) 6.09342 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 23.7608 (min) 32.7892 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -8.29155e-05 (min) 1.45239e-06 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:04 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:04 DEBUG opendrift:694: No elements hit coastline.
15:21:04 DEBUG opendrift:738: Lifting 31 elements to seafloor.
15:21:04 DEBUG opendrift:1695: No elements to deactivate
15:21:04 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:04 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:04 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:04 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 12
15:21:04 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0]
15:21:04 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3]
15:21:04 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 40. 0.]
[ 0. 0. 0. 0. 0.]
[ 1. 0. 0. 3. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:04 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:04 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:04 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:04 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:04 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.025241302503377232
15:21:04 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:04 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:04 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:04 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:534: 12 elements reached seafloor, interacting with bottom
15:21:04 DEBUG opendrift:738: Lifting 12 elements to seafloor.
15:21:04 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:04 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:04 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:04 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:04 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:04 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:04 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:04 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:04 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:04 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:04 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:04 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:04 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:04 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:04 INFO opendrift.models.chemicaldrift:1861: partitioning: [410, 0, 43, 47, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:04 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:04 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:04 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:04 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:04 DEBUG opendrift:2055: ======================================================================
15:21:04 INFO opendrift:2056: 2025-03-24 17:20:53.643886 - step 5 of 96 - 500 active elements (0 deactivated)
15:21:04 DEBUG opendrift:2062: 0 elements scheduled.
15:21:04 DEBUG opendrift:2064: ======================================================================
15:21:04 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.66414463437471
15:21:04 DEBUG opendrift:2080: 10.513369769211508 <- longitude -> 10.70421834567803
15:21:04 DEBUG opendrift:2085: -21.616435088023387 <- z -> -0.05087820114435104
15:21:04 DEBUG opendrift:2086: ---------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:04 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:04 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:04 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:04 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:04 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 17:00:00 (before)
2025-03-24 18:00:00 (after)
15:21:07 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:07 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:07 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:07 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:07 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:07 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:07 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 39x34x7) for time after (2025-03-24 18:00:00)
15:21:07 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 17:00:00) in space (linearNDFast)
15:21:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:07 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 18:00:00) in space (linearNDFast)
15:21:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:07 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 17:00:00, weight 0.65) and
after (2025-03-24 18:00:00, weight 0.35) in time
15:21:07 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48664131470347 and -59.295792708543964 degrees.
15:21:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48664131470347 and -59.295792708543964 degrees.
15:21:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:07 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:07 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:07 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:07 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:07 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:07 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0305197 (min) 0.134348 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.108838 (min) 0.334025 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.586685 (min) -0.555348 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.614021 (min) 2.10958 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.453447 (min) 4.65615 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.71017 (min) 23.0359 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.47501 (min) 6.09505 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 23.819 (min) 32.7771 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -8.59053e-05 (min) 2.2123e-05 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:07 DEBUG opendrift:694: No elements hit coastline.
15:21:07 DEBUG opendrift:738: Lifting 47 elements to seafloor.
15:21:07 DEBUG opendrift:1695: No elements to deactivate
15:21:07 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:07 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:07 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:07 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 17
15:21:07 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
15:21:07 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
15:21:07 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 56. 0.]
[ 0. 0. 0. 0. 0.]
[ 2. 0. 0. 7. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:07 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:07 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:07 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:07 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:07 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.01746118880867047
15:21:07 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:07 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:07 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
15:21:07 DEBUG opendrift:738: Lifting 16 elements to seafloor.
15:21:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:07 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:07 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:07 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:07 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:07 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:07 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:07 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:07 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:07 INFO opendrift.models.chemicaldrift:1861: partitioning: [395, 0, 40, 65, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:07 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:07 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:07 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:07 DEBUG opendrift:733: No elements hit seafloor.
15:21:07 DEBUG opendrift:2055: ======================================================================
15:21:07 INFO opendrift:2056: 2025-03-24 17:50:53.643886 - step 6 of 96 - 500 active elements (0 deactivated)
15:21:07 DEBUG opendrift:2062: 0 elements scheduled.
15:21:07 DEBUG opendrift:2064: ======================================================================
15:21:07 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.66895074649355
15:21:07 DEBUG opendrift:2080: 10.515245072546833 <- longitude -> 10.704590869355101
15:21:07 DEBUG opendrift:2085: -21.70108413696289 <- z -> -0.14369193457918555
15:21:07 DEBUG opendrift:2086: ---------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:07 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 17:00:00 (before)
2025-03-24 18:00:00 (after)
15:21:07 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 17:00:00) in space (linearNDFast)
15:21:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:07 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 18:00:00) in space (linearNDFast)
15:21:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:07 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 17:00:00, weight 0.15) and
after (2025-03-24 18:00:00, weight 0.85) in time
15:21:07 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48476601529043 and -59.29542018214585 degrees.
15:21:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48476601529043 and -59.29542018214585 degrees.
15:21:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:07 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:07 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:07 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:07 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:07 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:07 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0545684 (min) 0.140413 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.101612 (min) 0.346298 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.590813 (min) -0.559806 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.13975 (min) 2.41908 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.283038 (min) 3.07183 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.75159 (min) 22.8441 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.4611 (min) 6.09917 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 23.732 (min) 32.7676 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -9.81389e-05 (min) 6.51635e-05 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:07 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:07 DEBUG opendrift:694: No elements hit coastline.
15:21:07 DEBUG opendrift:738: Lifting 65 elements to seafloor.
15:21:07 DEBUG opendrift:1695: No elements to deactivate
15:21:07 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:07 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:07 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:07 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 11
15:21:07 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 2 0 0]
15:21:07 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 0 3 3]
15:21:07 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 66. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 9. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:07 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:07 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:07 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:07 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:07 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.011051388718628713
15:21:07 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:07 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:07 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:07 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
15:21:07 DEBUG opendrift:738: Lifting 10 elements to seafloor.
15:21:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:07 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:07 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:07 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:07 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:07 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:07 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:07 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:07 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:07 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:07 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:07 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:07 INFO opendrift.models.chemicaldrift:1861: partitioning: [386, 0, 35, 79, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:07 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:07 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:07 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:07 DEBUG opendrift:733: No elements hit seafloor.
15:21:07 DEBUG opendrift:2055: ======================================================================
15:21:07 INFO opendrift:2056: 2025-03-24 18:20:53.643886 - step 7 of 96 - 500 active elements (0 deactivated)
15:21:07 DEBUG opendrift:2062: 0 elements scheduled.
15:21:07 DEBUG opendrift:2064: ======================================================================
15:21:07 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.67368636834811
15:21:07 DEBUG opendrift:2080: 10.517192761655927 <- longitude -> 10.705573003931539
15:21:07 DEBUG opendrift:2085: -21.69609832763672 <- z -> -0.1629167477108855
15:21:07 DEBUG opendrift:2086: ---------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:07 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 18:00:00 (before)
2025-03-24 19:00:00 (after)
15:21:09 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:09 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:09 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:09 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:09 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:09 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:09 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 41x34x7) for time after (2025-03-24 19:00:00)
15:21:09 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 18:00:00) in space (linearNDFast)
15:21:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:09 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 19:00:00) in space (linearNDFast)
15:21:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:09 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 18:00:00, weight 0.65) and
after (2025-03-24 19:00:00, weight 0.35) in time
15:21:09 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.482818320216325 and -59.29443804660577 degrees.
15:21:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.482818320216325 and -59.29443804660577 degrees.
15:21:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:09 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:09 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:09 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:09 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:09 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:09 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0214115 (min) 0.16001 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0971883 (min) 0.373858 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.585969 (min) -0.553561 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.70903 (min) 2.53557 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.142936 (min) 2.49202 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.79903 (min) 22.729 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.47112 (min) 6.10106 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 23.7143 (min) 32.8101 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000120355 (min) 6.56388e-05 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:09 DEBUG opendrift:694: No elements hit coastline.
15:21:09 DEBUG opendrift:733: No elements hit seafloor.
15:21:09 DEBUG opendrift:1695: No elements to deactivate
15:21:09 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:09 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:09 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:09 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 9
15:21:09 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0]
15:21:09 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3]
15:21:09 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 75. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 13. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:09 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:09 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:09 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:09 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:09 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.009137317554325125
15:21:09 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:09 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:09 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:09 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
15:21:09 DEBUG opendrift:738: Lifting 9 elements to seafloor.
15:21:09 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:09 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:09 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:09 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:09 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:09 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:09 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:09 INFO opendrift.models.chemicaldrift:1861: partitioning: [377, 0, 34, 89, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:09 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:09 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:09 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:09 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:09 DEBUG opendrift:2055: ======================================================================
15:21:09 INFO opendrift:2056: 2025-03-24 18:50:53.643886 - step 8 of 96 - 500 active elements (0 deactivated)
15:21:09 DEBUG opendrift:2062: 0 elements scheduled.
15:21:09 DEBUG opendrift:2064: ======================================================================
15:21:09 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.67815375663664
15:21:09 DEBUG opendrift:2080: 10.51904750810102 <- longitude -> 10.707209972620852
15:21:09 DEBUG opendrift:2085: -21.69609832763672 <- z -> -0.21427666118715477
15:21:09 DEBUG opendrift:2086: ---------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:09 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 18:00:00 (before)
2025-03-24 19:00:00 (after)
15:21:09 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 18:00:00) in space (linearNDFast)
15:21:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:09 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 19:00:00) in space (linearNDFast)
15:21:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:09 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 18:00:00, weight 0.15) and
after (2025-03-24 19:00:00, weight 0.85) in time
15:21:09 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48096357323951 and -59.292801085236746 degrees.
15:21:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.48096357323951 and -59.292801085236746 degrees.
15:21:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:09 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:09 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:09 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:09 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:09 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:09 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0668884 (min) 0.153646 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0788912 (min) 0.355907 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.576742 (min) -0.542608 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.73458 (min) 2.54228 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.899588 (min) 2.001 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.84362 (min) 22.6275 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.43893 (min) 6.10199 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 23.7461 (min) 32.834 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000137601 (min) 9.04495e-05 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:09 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:09 DEBUG opendrift:694: No elements hit coastline.
15:21:09 DEBUG opendrift:733: No elements hit seafloor.
15:21:09 DEBUG opendrift:1695: No elements to deactivate
15:21:09 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:09 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:09 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:09 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 8
15:21:09 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0]
15:21:09 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3]
15:21:09 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 83. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 14. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:09 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:09 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:09 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:09 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:09 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.0070880113264167495
15:21:09 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:09 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:09 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:09 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
15:21:09 DEBUG opendrift:738: Lifting 8 elements to seafloor.
15:21:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:09 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:09 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:21:09 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:09 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:09 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:09 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:09 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:09 INFO opendrift.models.chemicaldrift:1861: partitioning: [369, 0, 33, 98, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:09 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:09 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:09 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:09 DEBUG opendrift:733: No elements hit seafloor.
15:21:09 DEBUG opendrift:2055: ======================================================================
15:21:09 INFO opendrift:2056: 2025-03-24 19:20:53.643886 - step 9 of 96 - 500 active elements (0 deactivated)
15:21:09 DEBUG opendrift:2062: 0 elements scheduled.
15:21:09 DEBUG opendrift:2064: ======================================================================
15:21:09 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.68239209064155
15:21:09 DEBUG opendrift:2080: 10.520893245396977 <- longitude -> 10.709913397183046
15:21:09 DEBUG opendrift:2085: -21.69609832763672 <- z -> -0.18904927512790864
15:21:09 DEBUG opendrift:2086: ---------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:09 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 19:00:00 (before)
2025-03-24 20:00:00 (after)
15:21:11 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:11 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:11 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:11 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:11 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:11 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:11 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 42x34x7) for time after (2025-03-24 20:00:00)
15:21:11 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 19:00:00) in space (linearNDFast)
15:21:11 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:11 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 20:00:00) in space (linearNDFast)
15:21:11 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:11 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 19:00:00, weight 0.65) and
after (2025-03-24 20:00:00, weight 0.35) in time
15:21:11 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:11 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4791178313822 and -59.29009764840326 degrees.
15:21:11 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4791178313822 and -59.29009764840326 degrees.
15:21:11 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:11 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:11 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:11 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:11 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:11 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:11 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:11 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:11 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:11 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:11 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:11 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:11 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:11 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:11 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:11 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:11 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:11 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:11 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:11 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:11 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:11 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:11 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.074534 (min) 0.172245 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0707289 (min) 0.339892 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.55558 (min) -0.520128 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: x_wind: 2.2187 (min) 3.11653 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.32843 (min) 2.17009 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.88987 (min) 22.5289 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.45277 (min) 6.10575 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 23.8697 (min) 32.8607 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000133334 (min) 0.000101894 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:11 DEBUG opendrift:694: No elements hit coastline.
15:21:11 DEBUG opendrift:733: No elements hit seafloor.
15:21:11 DEBUG opendrift:1695: No elements to deactivate
15:21:11 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:11 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:11 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:11 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 8
15:21:11 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0]
15:21:11 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3]
15:21:11 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 91. 0.]
[ 0. 0. 0. 0. 0.]
[ 3. 0. 0. 15. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:11 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:11 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:11 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:11 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:11 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.009755926994835984
15:21:11 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:11 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:11 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:11 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
15:21:11 DEBUG opendrift:738: Lifting 8 elements to seafloor.
15:21:11 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:11 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:11 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:11 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:11 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:11 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:11 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:11 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:11 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:11 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:11 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:11 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:11 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:11 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:11 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:11 INFO opendrift.models.chemicaldrift:1861: partitioning: [361, 0, 28, 111, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:11 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:11 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:11 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:11 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:21:11 DEBUG opendrift:2055: ======================================================================
15:21:11 INFO opendrift:2056: 2025-03-24 19:50:53.643886 - step 10 of 96 - 500 active elements (0 deactivated)
15:21:11 DEBUG opendrift:2062: 0 elements scheduled.
15:21:11 DEBUG opendrift:2064: ======================================================================
15:21:11 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.686257192597516
15:21:11 DEBUG opendrift:2080: 10.522497819395173 <- longitude -> 10.713685259730461
15:21:11 DEBUG opendrift:2085: -21.69609832763672 <- z -> -0.03283444958796572
15:21:11 DEBUG opendrift:2086: ---------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:11 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:11 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:11 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:11 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 19:00:00 (before)
2025-03-24 20:00:00 (after)
15:21:11 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 19:00:00) in space (linearNDFast)
15:21:11 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:11 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 20:00:00) in space (linearNDFast)
15:21:11 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:11 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 19:00:00, weight 0.15) and
after (2025-03-24 20:00:00, weight 0.85) in time
15:21:11 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:11 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.477513262579336 and -59.28632578920228 degrees.
15:21:11 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.477513262579336 and -59.28632578920228 degrees.
15:21:11 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:11 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:11 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:11 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:11 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:11 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:11 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:11 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:11 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:11 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:11 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:11 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:11 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:11 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:11 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:11 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:11 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:11 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:11 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:11 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:11 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:11 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:11 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:11 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0790722 (min) 0.155606 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0695673 (min) 0.330256 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.529227 (min) -0.492467 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: x_wind: 2.97698 (min) 3.73605 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.67757 (min) 2.61882 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.92909 (min) 22.4392 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.41686 (min) 6.11075 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 23.762 (min) 32.854 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000117557 (min) 0.00010979 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:11 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:11 DEBUG opendrift:694: No elements hit coastline.
15:21:11 DEBUG opendrift:733: No elements hit seafloor.
15:21:11 DEBUG opendrift:1695: No elements to deactivate
15:21:11 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:11 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:11 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:11 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 10
15:21:11 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 0 0 0 0 0]
15:21:11 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 3 3 3 3 3]
15:21:11 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 100. 0.]
[ 0. 0. 0. 0. 0.]
[ 4. 0. 0. 20. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:11 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:11 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:11 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:11 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:11 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.014515234594414894
15:21:11 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:11 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:11 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:11 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
15:21:11 DEBUG opendrift:738: Lifting 9 elements to seafloor.
15:21:11 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:11 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:12 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:12 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:12 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:12 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:12 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:12 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
15:21:12 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:21:12 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:12 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:12 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:12 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:12 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:12 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:12 INFO opendrift.models.chemicaldrift:1861: partitioning: [353, 0, 22, 125, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:12 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:12 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:12 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:12 DEBUG opendrift:733: No elements hit seafloor.
15:21:12 DEBUG opendrift:2055: ======================================================================
15:21:12 INFO opendrift:2056: 2025-03-24 20:20:53.643886 - step 11 of 96 - 500 active elements (0 deactivated)
15:21:12 DEBUG opendrift:2062: 0 elements scheduled.
15:21:12 DEBUG opendrift:2064: ======================================================================
15:21:12 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.68999758230868
15:21:12 DEBUG opendrift:2080: 10.5232485333822 <- longitude -> 10.717511473960167
15:21:12 DEBUG opendrift:2085: -21.69609832763672 <- z -> -0.00017981959988055962
15:21:12 DEBUG opendrift:2086: ---------------------------------
15:21:12 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:12 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:12 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:12 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:12 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:12 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:12 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:12 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 20:00:00 (before)
2025-03-24 21:00:00 (after)
15:21:14 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:14 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:14 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:14 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:14 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:14 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:14 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 43x34x7) for time after (2025-03-24 21:00:00)
15:21:14 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 20:00:00) in space (linearNDFast)
15:21:14 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:14 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 21:00:00) in space (linearNDFast)
15:21:14 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:14 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 20:00:00, weight 0.65) and
after (2025-03-24 21:00:00, weight 0.35) in time
15:21:14 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:14 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.476762545607244 and -59.28249957933736 degrees.
15:21:14 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.476762545607244 and -59.28249957933736 degrees.
15:21:14 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:14 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:14 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:14 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:14 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:14 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:14 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:14 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:14 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:14 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:14 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:14 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:14 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:14 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:14 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:14 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:14 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:14 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:14 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:14 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:14 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:14 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:14 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0822355 (min) 0.147142 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0529785 (min) 0.292939 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.49294 (min) -0.454847 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: x_wind: 3.46007 (min) 4.01558 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.80788 (min) 2.73033 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 9.93594 (min) 22.4846 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.43572 (min) 6.11555 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 23.8902 (min) 32.8575 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -9.36656e-05 (min) 0.000118329 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:14 DEBUG opendrift:694: No elements hit coastline.
15:21:14 DEBUG opendrift:733: No elements hit seafloor.
15:21:14 DEBUG opendrift:1695: No elements to deactivate
15:21:14 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:14 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:14 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:14 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3
15:21:14 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0]
15:21:14 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3]
15:21:14 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 103. 0.]
[ 0. 0. 0. 0. 0.]
[ 4. 0. 0. 25. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:14 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:14 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:14 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:14 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:14 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.017008464100013134
15:21:14 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:14 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:14 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:14 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
15:21:14 DEBUG opendrift:738: Lifting 3 elements to seafloor.
15:21:14 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:14 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:14 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:14 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:14 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:14 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:14 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:14 INFO opendrift.models.chemicaldrift:1861: partitioning: [350, 0, 21, 129, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:14 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:14 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:14 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:14 DEBUG opendrift:733: No elements hit seafloor.
15:21:14 DEBUG opendrift:2055: ======================================================================
15:21:14 INFO opendrift:2056: 2025-03-24 20:50:53.643886 - step 12 of 96 - 500 active elements (0 deactivated)
15:21:14 DEBUG opendrift:2062: 0 elements scheduled.
15:21:14 DEBUG opendrift:2064: ======================================================================
15:21:14 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.692184783981716
15:21:14 DEBUG opendrift:2080: 10.525157660666421 <- longitude -> 10.721136232254148
15:21:14 DEBUG opendrift:2085: -21.69609832763672 <- z -> -0.10057604016468225
15:21:14 DEBUG opendrift:2086: ---------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:14 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:14 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:14 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:14 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 20:00:00 (before)
2025-03-24 21:00:00 (after)
15:21:14 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 20:00:00) in space (linearNDFast)
15:21:14 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:14 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 21:00:00) in space (linearNDFast)
15:21:14 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:14 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 20:00:00, weight 0.15) and
after (2025-03-24 21:00:00, weight 0.85) in time
15:21:14 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:14 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47485341679965 and -59.27887481138291 degrees.
15:21:14 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47485341679965 and -59.27887481138291 degrees.
15:21:14 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:14 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:14 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:14 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:14 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:14 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:14 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:14 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:14 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:14 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:14 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:14 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:14 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:14 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:14 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:14 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:14 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:14 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:14 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:14 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:14 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:14 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:14 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0847996 (min) 0.12857 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0384891 (min) 0.252611 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.454336 (min) -0.412856 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: x_wind: 3.82324 (min) 4.29169 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.80305 (min) 2.82898 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.0113 (min) 22.6059 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.43692 (min) 6.12025 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 23.9031 (min) 32.8787 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -5.81459e-05 (min) 0.000127147 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:14 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:14 DEBUG opendrift:694: No elements hit coastline.
15:21:14 DEBUG opendrift:733: No elements hit seafloor.
15:21:14 DEBUG opendrift:1695: No elements to deactivate
15:21:14 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:14 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:14 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:14 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6
15:21:14 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0]
15:21:14 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3]
15:21:14 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 109. 0.]
[ 0. 0. 0. 0. 0.]
[ 4. 0. 0. 26. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:14 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:14 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:14 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:14 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:14 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.018363104237859012
15:21:14 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:14 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:14 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:14 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
15:21:14 DEBUG opendrift:738: Lifting 6 elements to seafloor.
15:21:14 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:14 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:14 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:14 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:14 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:14 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:14 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:14 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:14 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:14 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:14 INFO opendrift.models.chemicaldrift:1861: partitioning: [344, 0, 19, 137, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:14 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:14 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:14 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:14 DEBUG opendrift:733: No elements hit seafloor.
15:21:14 DEBUG opendrift:2055: ======================================================================
15:21:14 INFO opendrift:2056: 2025-03-24 21:20:53.643886 - step 13 of 96 - 500 active elements (0 deactivated)
15:21:14 DEBUG opendrift:2062: 0 elements scheduled.
15:21:14 DEBUG opendrift:2064: ======================================================================
15:21:14 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.692967596122834
15:21:14 DEBUG opendrift:2080: 10.526845794017303 <- longitude -> 10.724490989231148
15:21:14 DEBUG opendrift:2085: -21.69609832763672 <- z -> -0.060280048218379956
15:21:14 DEBUG opendrift:2086: ---------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:14 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:14 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:14 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:14 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:14 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 21:00:00 (before)
2025-03-24 22:00:00 (after)
15:21:16 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:16 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:16 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:16 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:16 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:16 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:16 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 44x34x7) for time after (2025-03-24 22:00:00)
15:21:16 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 21:00:00) in space (linearNDFast)
15:21:16 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:16 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 22:00:00) in space (linearNDFast)
15:21:16 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:16 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 21:00:00, weight 0.65) and
after (2025-03-24 22:00:00, weight 0.35) in time
15:21:16 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:16 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731652904008 and -59.275520059918165 degrees.
15:21:16 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4731652904008 and -59.275520059918165 degrees.
15:21:16 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:16 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:16 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:16 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:16 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:16 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:16 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:16 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:16 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:16 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:16 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:16 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:16 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:16 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:16 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:16 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:16 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:16 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:16 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:16 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:16 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0861234 (min) 0.116762 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.00659023 (min) 0.203453 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.406738 (min) -0.363949 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.41439 (min) 4.75384 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.01582 (min) 2.97217 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.0843 (min) 22.7375 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.43007 (min) 6.12519 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 23.9646 (min) 32.8987 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -5.47343e-05 (min) 0.000133684 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:16 DEBUG opendrift:694: No elements hit coastline.
15:21:16 DEBUG opendrift:733: No elements hit seafloor.
15:21:16 DEBUG opendrift:1695: No elements to deactivate
15:21:16 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:16 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:16 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:16 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 7
15:21:16 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0]
15:21:16 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3]
15:21:16 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 116. 0.]
[ 0. 0. 0. 0. 0.]
[ 4. 0. 0. 28. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:16 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:16 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:16 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:16 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:16 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.021859281162358538
15:21:16 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:16 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:16 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:16 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
15:21:16 DEBUG opendrift:738: Lifting 7 elements to seafloor.
15:21:16 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:16 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:16 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:16 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:16 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:16 INFO opendrift.models.chemicaldrift:1861: partitioning: [337, 0, 19, 144, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:16 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:16 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:16 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:16 DEBUG opendrift:733: No elements hit seafloor.
15:21:16 DEBUG opendrift:2055: ======================================================================
15:21:16 INFO opendrift:2056: 2025-03-24 21:50:53.643886 - step 14 of 96 - 500 active elements (0 deactivated)
15:21:16 DEBUG opendrift:2062: 0 elements scheduled.
15:21:16 DEBUG opendrift:2064: ======================================================================
15:21:16 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.693948397904634
15:21:16 DEBUG opendrift:2080: 10.527974186920213 <- longitude -> 10.727459025956513
15:21:16 DEBUG opendrift:2085: -21.69609832763672 <- z -> 0.0
15:21:16 DEBUG opendrift:2086: ---------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:16 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:16 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:16 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:16 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 21:00:00 (before)
2025-03-24 22:00:00 (after)
15:21:16 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 21:00:00) in space (linearNDFast)
15:21:16 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:16 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 22:00:00) in space (linearNDFast)
15:21:16 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:16 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 21:00:00, weight 0.15) and
after (2025-03-24 22:00:00, weight 0.85) in time
15:21:16 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:16 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.472036893717394 and -59.272552011570724 degrees.
15:21:16 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.472036893717394 and -59.272552011570724 degrees.
15:21:16 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:16 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:16 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:16 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:16 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:16 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:16 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:16 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:16 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:16 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:16 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:16 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:16 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:16 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:16 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:16 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:16 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:16 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:16 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:16 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:16 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0869067 (min) 0.10168 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0482716 (min) 0.154224 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.355063 (min) -0.312778 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.03718 (min) 5.32587 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.32342 (min) 3.13883 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.1385 (min) 22.8607 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.42164 (min) 6.13117 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.0848 (min) 32.9338 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -5.02417e-05 (min) 0.000139227 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:16 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:16 DEBUG opendrift:694: No elements hit coastline.
15:21:16 DEBUG opendrift:733: No elements hit seafloor.
15:21:16 DEBUG opendrift:1695: No elements to deactivate
15:21:16 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:16 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:16 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:16 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 11
15:21:16 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 2 0 0 2 0 0 0 0]
15:21:16 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 3 3 0 3 3 3 3]
15:21:16 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 125. 0.]
[ 0. 0. 0. 0. 0.]
[ 6. 0. 0. 28. 0.]
[ 0. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:16 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:16 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:16 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:16 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:16 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.026813014596197223
15:21:16 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:16 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:16 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:16 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
15:21:16 DEBUG opendrift:738: Lifting 9 elements to seafloor.
15:21:16 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:16 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:16 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:16 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:16 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:16 DEBUG opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
15:21:16 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:16 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:16 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:16 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:16 INFO opendrift.models.chemicaldrift:1861: partitioning: [330, 0, 15, 155, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:16 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:16 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:16 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:16 DEBUG opendrift:733: No elements hit seafloor.
15:21:16 DEBUG opendrift:2055: ======================================================================
15:21:16 INFO opendrift:2056: 2025-03-24 22:20:53.643886 - step 15 of 96 - 500 active elements (0 deactivated)
15:21:16 DEBUG opendrift:2062: 0 elements scheduled.
15:21:16 DEBUG opendrift:2064: ======================================================================
15:21:16 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.69595541759414
15:21:16 DEBUG opendrift:2080: 10.529166261039755 <- longitude -> 10.730119534419183
15:21:16 DEBUG opendrift:2085: -21.69609832763672 <- z -> -0.04410758672817017
15:21:16 DEBUG opendrift:2086: ---------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:16 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:16 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:16 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:16 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:16 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 22:00:00 (before)
2025-03-24 23:00:00 (after)
15:21:18 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:18 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:18 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:18 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:18 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:18 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:18 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 44x34x7) for time after (2025-03-24 23:00:00)
15:21:18 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 22:00:00) in space (linearNDFast)
15:21:18 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:18 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 23:00:00) in space (linearNDFast)
15:21:18 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:18 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 22:00:00, weight 0.65) and
after (2025-03-24 23:00:00, weight 0.35) in time
15:21:18 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:18 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47084481686337 and -59.26989151097934 degrees.
15:21:18 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47084481686337 and -59.26989151097934 degrees.
15:21:18 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:18 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:18 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:18 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:18 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:18 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:18 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:18 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:18 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:18 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:18 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:18 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:18 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:18 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:18 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:18 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:18 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:18 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:18 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:18 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:18 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:18 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:18 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:18 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:18 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:18 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:18 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:18 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0852292 (min) 0.1111 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0558787 (min) 0.109787 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.305448 (min) -0.267472 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.30725 (min) 5.77856 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.39663 (min) 3.1186 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.2098 (min) 22.9693 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.40567 (min) 6.13713 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.0653 (min) 32.9482 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -6.21972e-05 (min) 0.000185516 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:18 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:18 DEBUG opendrift:694: No elements hit coastline.
15:21:18 DEBUG opendrift:733: No elements hit seafloor.
15:21:18 DEBUG opendrift:1695: No elements to deactivate
15:21:18 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:18 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:18 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:18 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 11
15:21:18 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 3 0 0 0 0 0]
15:21:18 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 0 3 3 3 3 3]
15:21:18 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 135. 0.]
[ 0. 0. 0. 0. 0.]
[ 6. 0. 0. 30. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:18 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:18 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:18 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:18 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:18 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.03034810245988968
15:21:18 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:18 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:18 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:18 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
15:21:18 DEBUG opendrift:738: Lifting 10 elements to seafloor.
15:21:18 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:18 DEBUG opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
15:21:18 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:18 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:18 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:18 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:18 INFO opendrift.models.chemicaldrift:1861: partitioning: [321, 0, 15, 164, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:18 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:18 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:18 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:18 DEBUG opendrift:733: No elements hit seafloor.
15:21:18 DEBUG opendrift:2055: ======================================================================
15:21:18 INFO opendrift:2056: 2025-03-24 22:50:53.643886 - step 16 of 96 - 500 active elements (0 deactivated)
15:21:18 DEBUG opendrift:2062: 0 elements scheduled.
15:21:18 DEBUG opendrift:2064: ======================================================================
15:21:18 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.6955539975004
15:21:18 DEBUG opendrift:2080: 10.52906790459042 <- longitude -> 10.7321640059618
15:21:18 DEBUG opendrift:2085: -21.967609405517578 <- z -> 0.0
15:21:18 DEBUG opendrift:2086: ---------------------------------
15:21:18 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:18 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:18 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:18 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:18 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:18 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:18 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:18 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 22:00:00 (before)
2025-03-24 23:00:00 (after)
15:21:18 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 22:00:00) in space (linearNDFast)
15:21:18 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:18 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-24 23:00:00) in space (linearNDFast)
15:21:18 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:18 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 22:00:00, weight 0.15) and
after (2025-03-24 23:00:00, weight 0.85) in time
15:21:18 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:19 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.470943166418124 and -59.267847026659574 degrees.
15:21:19 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.470943166418124 and -59.267847026659574 degrees.
15:21:19 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:19 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:19 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:19 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:19 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:19 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:19 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:19 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:19 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:19 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:19 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:19 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:19 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:19 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:19 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:19 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:19 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:19 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:19 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:19 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:19 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:19 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:19 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:19 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:19 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:19 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:19 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:19 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:19 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:19 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0824792 (min) 0.126981 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.102614 (min) 0.0782915 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.256732 (min) -0.22481 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.50053 (min) 6.20846 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.36768 (min) 3.02308 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.2121 (min) 23.0513 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.39662 (min) 6.14213 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.0203 (min) 32.9618 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -6.58865e-05 (min) 0.000270479 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:19 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:19 DEBUG opendrift:694: No elements hit coastline.
15:21:19 DEBUG opendrift:733: No elements hit seafloor.
15:21:19 DEBUG opendrift:1695: No elements to deactivate
15:21:19 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:19 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:19 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:19 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 10
15:21:19 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0]
15:21:19 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3]
15:21:19 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 145. 0.]
[ 0. 0. 0. 0. 0.]
[ 6. 0. 0. 30. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:19 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:19 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:19 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:19 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:19 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.03349354253685835
15:21:19 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:19 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:19 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:19 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
15:21:19 DEBUG opendrift:738: Lifting 10 elements to seafloor.
15:21:19 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:19 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:19 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:19 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:19 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:19 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:19 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:19 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:19 INFO opendrift.models.chemicaldrift:1861: partitioning: [311, 0, 14, 175, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:19 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:19 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:19 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:19 DEBUG opendrift:733: No elements hit seafloor.
15:21:19 DEBUG opendrift:2055: ======================================================================
15:21:19 INFO opendrift:2056: 2025-03-24 23:20:53.643886 - step 17 of 96 - 500 active elements (0 deactivated)
15:21:19 DEBUG opendrift:2062: 0 elements scheduled.
15:21:19 DEBUG opendrift:2064: ======================================================================
15:21:19 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.694654599368725
15:21:19 DEBUG opendrift:2080: 10.528828859013016 <- longitude -> 10.733712749658498
15:21:19 DEBUG opendrift:2085: -22.22749893528155 <- z -> -0.05354903469235328
15:21:19 DEBUG opendrift:2086: ---------------------------------
15:21:19 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:19 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:19 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:19 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:19 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:19 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:19 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:19 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 23:00:00 (before)
2025-03-25 00:00:00 (after)
15:21:21 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:21 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:21 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:21 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:21 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:21 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:21 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 44x34x7) for time after (2025-03-25 00:00:00)
15:21:21 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 23:00:00) in space (linearNDFast)
15:21:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:21 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 00:00:00) in space (linearNDFast)
15:21:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:21 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 23:00:00, weight 0.65) and
after (2025-03-25 00:00:00, weight 0.35) in time
15:21:21 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47118222404571 and -59.266298301107156 degrees.
15:21:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.47118222404571 and -59.266298301107156 degrees.
15:21:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:21 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:21 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:21 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:21 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:21 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:21 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:21 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:21 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0769439 (min) 0.118002 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.13272 (min) 0.0759034 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.222115 (min) -0.197447 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.7354 (min) 6.39425 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.37362 (min) 2.96343 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.2132 (min) 23.1122 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.39625 (min) 6.1446 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 23.9593 (min) 32.9721 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -3.70654e-05 (min) 0.000230893 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:21 DEBUG opendrift:694: No elements hit coastline.
15:21:21 DEBUG opendrift:733: No elements hit seafloor.
15:21:21 DEBUG opendrift:1695: No elements to deactivate
15:21:21 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:21 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:21 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:21 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 18
15:21:21 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
15:21:21 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
15:21:21 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 163. 0.]
[ 0. 0. 0. 0. 0.]
[ 6. 0. 0. 31. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:21 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:21 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:21 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:21 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:21 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.035835199785991007
15:21:21 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:21 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:21 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:21 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:534: 18 elements reached seafloor, interacting with bottom
15:21:21 DEBUG opendrift:738: Lifting 18 elements to seafloor.
15:21:21 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 25 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:21 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:21 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 24 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:21 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:21 DEBUG opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
15:21:21 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:21 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:21 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:21 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:21 INFO opendrift.models.chemicaldrift:1861: partitioning: [293, 0, 12, 195, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:21 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:21 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:21 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:21 DEBUG opendrift:733: No elements hit seafloor.
15:21:21 DEBUG opendrift:2055: ======================================================================
15:21:21 INFO opendrift:2056: 2025-03-24 23:50:53.643886 - step 18 of 96 - 500 active elements (0 deactivated)
15:21:21 DEBUG opendrift:2062: 0 elements scheduled.
15:21:21 DEBUG opendrift:2064: ======================================================================
15:21:21 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.69250956018048
15:21:21 DEBUG opendrift:2080: 10.528334680199398 <- longitude -> 10.733712749658498
15:21:21 DEBUG opendrift:2085: -22.914751052856445 <- z -> 0.0
15:21:21 DEBUG opendrift:2086: ---------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:21 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:21 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-24 23:00:00 (before)
2025-03-25 00:00:00 (after)
15:21:21 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-24 23:00:00) in space (linearNDFast)
15:21:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:21 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 00:00:00) in space (linearNDFast)
15:21:21 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:21 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-24 23:00:00, weight 0.15) and
after (2025-03-25 00:00:00, weight 0.85) in time
15:21:21 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.471676395938616 and -59.26629829186096 degrees.
15:21:21 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.471676395938616 and -59.26629829186096 degrees.
15:21:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:21 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:21 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:21 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:21 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:21 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:21 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:21 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:21 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:21 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:21 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:21 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.081824 (min) 0.120376 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.121959 (min) 0.0771961 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.193901 (min) -0.176449 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.67966 (min) 6.79326 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.39478 (min) 3.06467 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.1987 (min) 23.1122 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.40297 (min) 6.14868 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.0411 (min) 32.9801 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -3.14122e-05 (min) 0.000175535 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:21 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:21 DEBUG opendrift:694: No elements hit coastline.
15:21:21 DEBUG opendrift:733: No elements hit seafloor.
15:21:21 DEBUG opendrift:1695: No elements to deactivate
15:21:21 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:21 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:21 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:21 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 11
15:21:21 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 2 0 0 0 0 0 0 0 0 0]
15:21:21 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 3 3 3 3 3 3 3]
15:21:21 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 173. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 33. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:21 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:21 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:21 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:21 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:21 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.03935088955002411
15:21:21 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:21 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:21 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:21 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
15:21:21 DEBUG opendrift:738: Lifting 10 elements to seafloor.
15:21:21 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 22 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:21 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:21 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:21 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:21 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:21 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:21 INFO opendrift.models.chemicaldrift:1861: partitioning: [284, 0, 11, 205, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:21 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:21 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:21 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:21 DEBUG opendrift:733: No elements hit seafloor.
15:21:21 DEBUG opendrift:2055: ======================================================================
15:21:21 INFO opendrift:2056: 2025-03-25 00:20:53.643886 - step 19 of 96 - 500 active elements (0 deactivated)
15:21:21 DEBUG opendrift:2062: 0 elements scheduled.
15:21:21 DEBUG opendrift:2064: ======================================================================
15:21:21 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.693277895657474
15:21:21 DEBUG opendrift:2080: 10.530227078838559 <- longitude -> 10.733712749658492
15:21:21 DEBUG opendrift:2085: -22.914751052856445 <- z -> 0.0
15:21:21 DEBUG opendrift:2086: ---------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:21 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:21 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:21 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:21 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:21 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 00:00:00 (before)
2025-03-25 01:00:00 (after)
15:21:24 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:24 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:24 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:24 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:24 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:24 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:24 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 44x34x7) for time after (2025-03-25 01:00:00)
15:21:24 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 00:00:00) in space (linearNDFast)
15:21:24 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:24 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 01:00:00) in space (linearNDFast)
15:21:24 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:24 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 00:00:00, weight 0.65) and
after (2025-03-25 01:00:00, weight 0.35) in time
15:21:24 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:24 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46978399726618 and -59.2662982915469 degrees.
15:21:24 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46978399726618 and -59.2662982915469 degrees.
15:21:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:24 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:24 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:24 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:24 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:24 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:24 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:24 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:24 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:24 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:24 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0809201 (min) 0.109876 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.095638 (min) 0.0964639 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.191822 (min) -0.177034 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.71251 (min) 6.97942 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.34937 (min) 3.19232 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.3552 (min) 23.1122 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.39081 (min) 6.15015 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.0481 (min) 32.9862 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -6.65985e-06 (min) 0.000194301 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:24 DEBUG opendrift:694: No elements hit coastline.
15:21:24 DEBUG opendrift:738: Lifting 3 elements to seafloor.
15:21:24 DEBUG opendrift:1695: No elements to deactivate
15:21:24 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:24 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:24 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:24 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 16
15:21:24 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
15:21:24 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
15:21:24 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 189. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 33. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:24 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:24 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:24 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:24 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:24 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.040469868108042595
15:21:24 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:24 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:24 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:24 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:534: 16 elements reached seafloor, interacting with bottom
15:21:24 DEBUG opendrift:738: Lifting 16 elements to seafloor.
15:21:24 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:24 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:24 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:24 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:24 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:24 INFO opendrift.models.chemicaldrift:1861: partitioning: [268, 0, 11, 221, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:24 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:24 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:24 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:24 DEBUG opendrift:733: No elements hit seafloor.
15:21:24 DEBUG opendrift:2055: ======================================================================
15:21:24 INFO opendrift:2056: 2025-03-25 00:50:53.643886 - step 20 of 96 - 500 active elements (0 deactivated)
15:21:24 DEBUG opendrift:2062: 0 elements scheduled.
15:21:24 DEBUG opendrift:2064: ======================================================================
15:21:24 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.693889242158505
15:21:24 DEBUG opendrift:2080: 10.531667823453402 <- longitude -> 10.733712749658492
15:21:24 DEBUG opendrift:2085: -22.914751052856445 <- z -> -0.03761151146915398
15:21:24 DEBUG opendrift:2086: ---------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:24 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 00:00:00 (before)
2025-03-25 01:00:00 (after)
15:21:24 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 00:00:00) in space (linearNDFast)
15:21:24 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:24 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 01:00:00) in space (linearNDFast)
15:21:24 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:24 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 00:00:00, weight 0.15) and
after (2025-03-25 01:00:00, weight 0.85) in time
15:21:24 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:24 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.468343263240925 and -59.266298289784935 degrees.
15:21:24 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.468343263240925 and -59.266298289784935 degrees.
15:21:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:24 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:24 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:24 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:24 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:24 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:24 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:24 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:24 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:24 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:24 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:24 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0987015 (min) 0.108217 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0661901 (min) 0.125071 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.20188 (min) -0.187025 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.86782 (min) 6.99465 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.27496 (min) 3.322 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.4895 (min) 23.1122 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.38453 (min) 6.1521 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.1148 (min) 32.9903 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -1.28054e-05 (min) 0.000186824 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:24 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:24 DEBUG opendrift:694: No elements hit coastline.
15:21:24 DEBUG opendrift:738: Lifting 26 elements to seafloor.
15:21:24 DEBUG opendrift:1695: No elements to deactivate
15:21:24 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:24 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:24 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:24 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 13
15:21:24 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0]
15:21:24 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3]
15:21:24 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 202. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 33. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:24 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:24 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:24 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:24 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:24 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.0402084836136428
15:21:24 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:24 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:24 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:24 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:534: 13 elements reached seafloor, interacting with bottom
15:21:24 DEBUG opendrift:738: Lifting 13 elements to seafloor.
15:21:24 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:24 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:25 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:25 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:25 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:25 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:25 INFO opendrift.models.chemicaldrift:1861: partitioning: [255, 0, 11, 234, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:25 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:25 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:25 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:25 DEBUG opendrift:733: No elements hit seafloor.
15:21:25 DEBUG opendrift:2055: ======================================================================
15:21:25 INFO opendrift:2056: 2025-03-25 01:20:53.643886 - step 21 of 96 - 500 active elements (0 deactivated)
15:21:25 DEBUG opendrift:2062: 0 elements scheduled.
15:21:25 DEBUG opendrift:2064: ======================================================================
15:21:25 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.69512762342767
15:21:25 DEBUG opendrift:2080: 10.533564544312743 <- longitude -> 10.733712749658492
15:21:25 DEBUG opendrift:2085: -22.914751052856445 <- z -> -0.16080268128073616
15:21:25 DEBUG opendrift:2086: ---------------------------------
15:21:25 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:25 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:25 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:25 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:25 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:25 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:25 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:25 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 01:00:00 (before)
2025-03-25 02:00:00 (after)
15:21:27 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:27 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:27 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:27 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:27 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:27 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:27 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 44x33x7) for time after (2025-03-25 02:00:00)
15:21:27 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 01:00:00) in space (linearNDFast)
15:21:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:27 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 02:00:00) in space (linearNDFast)
15:21:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:27 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 01:00:00, weight 0.65) and
after (2025-03-25 02:00:00, weight 0.35) in time
15:21:27 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46644653021108 and -59.266298289784935 degrees.
15:21:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46644653021108 and -59.266298289784935 degrees.
15:21:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:27 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:27 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:27 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:27 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:27 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:27 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:27 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:27 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.128588 (min) 0.131939 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0618269 (min) 0.116544 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.226859 (min) -0.210446 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.24116 (min) 7.40095 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.09538 (min) 3.10699 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.4976 (min) 23.1122 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.38013 (min) 6.15361 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.1438 (min) 32.9916 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -1.76737e-05 (min) 0.000147251 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:27 DEBUG opendrift:694: No elements hit coastline.
15:21:27 DEBUG opendrift:738: Lifting 59 elements to seafloor.
15:21:27 DEBUG opendrift:1695: No elements to deactivate
15:21:27 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:27 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:27 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:27 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 11
15:21:27 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0]
15:21:27 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3]
15:21:27 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 213. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 33. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:27 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:27 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:27 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:27 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:27 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.04467603066104248
15:21:27 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:27 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:27 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:27 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:534: 11 elements reached seafloor, interacting with bottom
15:21:27 DEBUG opendrift:738: Lifting 11 elements to seafloor.
15:21:27 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 23 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:27 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:27 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:27 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:27 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:27 INFO opendrift.models.chemicaldrift:1861: partitioning: [244, 0, 11, 245, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:27 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:27 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:27 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:27 DEBUG opendrift:733: No elements hit seafloor.
15:21:27 DEBUG opendrift:2055: ======================================================================
15:21:27 INFO opendrift:2056: 2025-03-25 01:50:53.643886 - step 22 of 96 - 500 active elements (0 deactivated)
15:21:27 DEBUG opendrift:2062: 0 elements scheduled.
15:21:27 DEBUG opendrift:2064: ======================================================================
15:21:27 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.69412831605231
15:21:27 DEBUG opendrift:2080: 10.534769195315267 <- longitude -> 10.733712749658492
15:21:27 DEBUG opendrift:2085: -22.900535583496094 <- z -> 0.0
15:21:27 DEBUG opendrift:2086: ---------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:27 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:27 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 01:00:00 (before)
2025-03-25 02:00:00 (after)
15:21:27 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 01:00:00) in space (linearNDFast)
15:21:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:27 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 02:00:00) in space (linearNDFast)
15:21:27 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:27 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 01:00:00, weight 0.15) and
after (2025-03-25 02:00:00, weight 0.85) in time
15:21:27 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.465241882342944 and -59.266298289784935 degrees.
15:21:27 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.465241882342944 and -59.266298289784935 degrees.
15:21:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:27 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:27 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:27 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:27 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:27 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:27 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:27 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:27 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:27 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:27 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:27 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.112758 (min) 0.190037 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0187947 (min) 0.162915 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.259796 (min) -0.239442 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.67985 (min) 8.04025 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.86997 (min) 2.74175 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.4376 (min) 23.1122 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.39019 (min) 6.15361 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.1457 (min) 32.9917 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -4.63475e-05 (min) 0.000111905 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:27 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:27 DEBUG opendrift:694: No elements hit coastline.
15:21:27 DEBUG opendrift:738: Lifting 81 elements to seafloor.
15:21:27 DEBUG opendrift:1695: No elements to deactivate
15:21:27 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:27 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:27 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:27 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 8
15:21:27 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0]
15:21:27 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3]
15:21:27 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 221. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 33. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:27 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:27 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:27 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:27 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:27 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.05162934117868603
15:21:27 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:27 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:27 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:27 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
15:21:27 DEBUG opendrift:738: Lifting 8 elements to seafloor.
15:21:27 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 19 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:27 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:27 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:27 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:27 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:27 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:27 INFO opendrift.models.chemicaldrift:1861: partitioning: [236, 0, 11, 253, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:27 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:27 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:27 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:27 DEBUG opendrift:733: No elements hit seafloor.
15:21:27 DEBUG opendrift:2055: ======================================================================
15:21:27 INFO opendrift:2056: 2025-03-25 02:20:53.643886 - step 23 of 96 - 500 active elements (0 deactivated)
15:21:27 DEBUG opendrift:2062: 0 elements scheduled.
15:21:27 DEBUG opendrift:2064: ======================================================================
15:21:27 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.69416805623519
15:21:27 DEBUG opendrift:2080: 10.535445033950905 <- longitude -> 10.733712749658489
15:21:27 DEBUG opendrift:2085: -22.869518280029297 <- z -> -0.053428370700646766
15:21:27 DEBUG opendrift:2086: ---------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:27 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:27 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:27 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:27 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:27 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 02:00:00 (before)
2025-03-25 03:00:00 (after)
15:21:29 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:29 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:29 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:29 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:29 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:29 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:29 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 45x34x7) for time after (2025-03-25 03:00:00)
15:21:29 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 02:00:00) in space (linearNDFast)
15:21:29 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:29 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 03:00:00) in space (linearNDFast)
15:21:29 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:29 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 02:00:00, weight 0.65) and
after (2025-03-25 03:00:00, weight 0.35) in time
15:21:29 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:29 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.464566048380405 and -59.266298289784935 degrees.
15:21:29 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.464566048380405 and -59.266298289784935 degrees.
15:21:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:29 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:29 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:29 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:29 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:29 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:29 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:29 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:29 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:29 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:29 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0907614 (min) 0.19083 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.000947616 (min) 0.18173 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.301923 (min) -0.279272 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.57366 (min) 8.09614 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.05918 (min) 2.96928 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.4242 (min) 23.1523 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.39404 (min) 6.15362 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.3218 (min) 32.9915 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -5.30527e-05 (min) 9.92254e-05 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:29 DEBUG opendrift:694: No elements hit coastline.
15:21:29 DEBUG opendrift:738: Lifting 96 elements to seafloor.
15:21:29 DEBUG opendrift:1695: No elements to deactivate
15:21:29 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:29 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:29 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:29 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 14
15:21:29 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0]
15:21:29 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3]
15:21:29 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 235. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 33. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:29 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:29 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:29 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:29 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:29 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.053074548147100914
15:21:29 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:29 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:29 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:29 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:534: 14 elements reached seafloor, interacting with bottom
15:21:29 DEBUG opendrift:738: Lifting 14 elements to seafloor.
15:21:29 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:29 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:29 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:29 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:29 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:29 INFO opendrift.models.chemicaldrift:1861: partitioning: [222, 0, 11, 267, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:29 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:29 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:29 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:29 DEBUG opendrift:733: No elements hit seafloor.
15:21:29 DEBUG opendrift:2055: ======================================================================
15:21:29 INFO opendrift:2056: 2025-03-25 02:50:53.643886 - step 24 of 96 - 500 active elements (0 deactivated)
15:21:29 DEBUG opendrift:2062: 0 elements scheduled.
15:21:29 DEBUG opendrift:2064: ======================================================================
15:21:29 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.694168056235185
15:21:29 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.73371274965849
15:21:29 DEBUG opendrift:2085: -22.83049201965332 <- z -> -0.04826721997615313
15:21:29 DEBUG opendrift:2086: ---------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:29 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 02:00:00 (before)
2025-03-25 03:00:00 (after)
15:21:29 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 02:00:00) in space (linearNDFast)
15:21:29 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:29 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 03:00:00) in space (linearNDFast)
15:21:29 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:29 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 02:00:00, weight 0.15) and
after (2025-03-25 03:00:00, weight 0.85) in time
15:21:29 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:29 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.2662982915469 degrees.
15:21:29 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.2662982915469 degrees.
15:21:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:29 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:29 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:29 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:29 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:29 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:29 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:29 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:29 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:29 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:29 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:29 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0803451 (min) 0.197317 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0123382 (min) 0.210723 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.3482 (min) -0.324224 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.21403 (min) 7.83549 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.42909 (min) 3.45515 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.4353 (min) 23.2421 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.38997 (min) 6.15364 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.3277 (min) 32.9912 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -5.83277e-05 (min) 8.56988e-05 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:29 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:29 DEBUG opendrift:694: No elements hit coastline.
15:21:29 DEBUG opendrift:738: Lifting 121 elements to seafloor.
15:21:29 DEBUG opendrift:1695: No elements to deactivate
15:21:29 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:29 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:29 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:29 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 10
15:21:29 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0]
15:21:29 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3]
15:21:29 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 245. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 33. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:29 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:29 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:29 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:29 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:29 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.05186388360343252
15:21:29 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:29 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:29 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:29 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:534: 10 elements reached seafloor, interacting with bottom
15:21:29 DEBUG opendrift:738: Lifting 10 elements to seafloor.
15:21:29 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 21 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 18 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 20 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:29 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:29 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:29 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:29 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:29 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:29 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:29 INFO opendrift.models.chemicaldrift:1861: partitioning: [212, 0, 10, 278, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:29 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:29 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:29 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:29 DEBUG opendrift:733: No elements hit seafloor.
15:21:29 DEBUG opendrift:2055: ======================================================================
15:21:29 INFO opendrift:2056: 2025-03-25 03:20:53.643886 - step 25 of 96 - 500 active elements (0 deactivated)
15:21:29 DEBUG opendrift:2062: 0 elements scheduled.
15:21:29 DEBUG opendrift:2064: ======================================================================
15:21:29 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.69416805623518
15:21:29 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.73371274965849
15:21:29 DEBUG opendrift:2085: -22.787973403930664 <- z -> -0.21785614114370766
15:21:29 DEBUG opendrift:2086: ---------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:29 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 03:00:00 (before)
2025-03-25 04:00:00 (after)
15:21:32 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:32 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:32 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:32 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:32 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:32 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:32 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 45x33x7) for time after (2025-03-25 04:00:00)
15:21:32 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 03:00:00) in space (linearNDFast)
15:21:32 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:32 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 04:00:00) in space (linearNDFast)
15:21:32 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:32 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 03:00:00, weight 0.65) and
after (2025-03-25 04:00:00, weight 0.35) in time
15:21:32 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:32 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.266298289784935 degrees.
15:21:32 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.266298289784935 degrees.
15:21:32 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:32 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:32 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:32 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:32 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:32 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:32 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:32 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:32 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:32 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:32 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:32 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:32 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:32 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:32 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:32 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:32 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:32 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:32 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:32 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:32 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:32 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:32 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0471155 (min) 0.17249 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0324942 (min) 0.236042 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.392309 (min) -0.365336 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.06905 (min) 7.63994 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.7704 (min) 3.70292 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.5947 (min) 23.3389 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.3492 (min) 6.15239 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.0269 (min) 32.9858 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -7.23052e-05 (min) 7.65629e-05 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:32 DEBUG opendrift:694: No elements hit coastline.
15:21:32 DEBUG opendrift:738: Lifting 137 elements to seafloor.
15:21:32 DEBUG opendrift:1695: No elements to deactivate
15:21:32 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:32 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:32 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:32 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 8
15:21:32 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0]
15:21:32 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3]
15:21:32 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 253. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 34. 0.]
[ 1. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:32 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:32 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:32 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:32 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:32 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.05139992497847414
15:21:32 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:32 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:32 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:32 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
15:21:32 DEBUG opendrift:738: Lifting 8 elements to seafloor.
15:21:32 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:32 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:32 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:32 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:32 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:32 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:32 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:32 INFO opendrift.models.chemicaldrift:1861: partitioning: [204, 0, 9, 287, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:32 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:32 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:32 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:32 DEBUG opendrift:733: No elements hit seafloor.
15:21:32 DEBUG opendrift:2055: ======================================================================
15:21:32 INFO opendrift:2056: 2025-03-25 03:50:53.643886 - step 26 of 96 - 500 active elements (0 deactivated)
15:21:32 DEBUG opendrift:2062: 0 elements scheduled.
15:21:32 DEBUG opendrift:2064: ======================================================================
15:21:32 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.69416805623517
15:21:32 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.73371274965849
15:21:32 DEBUG opendrift:2085: -22.746862411499023 <- z -> -0.1116172113912266
15:21:32 DEBUG opendrift:2086: ---------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:32 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:32 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:32 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:32 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 03:00:00 (before)
2025-03-25 04:00:00 (after)
15:21:32 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 03:00:00) in space (linearNDFast)
15:21:32 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:32 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 04:00:00) in space (linearNDFast)
15:21:32 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:32 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 03:00:00, weight 0.15) and
after (2025-03-25 04:00:00, weight 0.85) in time
15:21:32 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:32 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.2662982915469 degrees.
15:21:32 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.2662982915469 degrees.
15:21:32 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:32 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:32 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:32 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:32 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:32 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:32 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:32 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:32 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:32 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:32 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:32 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:32 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:32 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:32 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:32 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:32 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:32 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:32 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:32 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:32 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:32 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:32 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0499411 (min) 0.26844 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.059889 (min) 0.264888 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.435301 (min) -0.405836 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.02469 (min) 7.52275 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: y_wind: 3.09926 (min) 3.93899 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 23.4322 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.40209 (min) 6.15224 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.5064 (min) 32.9812 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -8.89032e-05 (min) 7.32557e-05 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:32 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:32 DEBUG opendrift:694: No elements hit coastline.
15:21:32 DEBUG opendrift:738: Lifting 152 elements to seafloor.
15:21:32 DEBUG opendrift:1695: No elements to deactivate
15:21:32 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:32 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:32 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:32 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 9
15:21:32 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 3 0 0 0 3 3 0]
15:21:32 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 3 0 0 3]
15:21:32 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 259. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 35. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:32 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:32 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:32 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:32 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:32 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.051676931748056876
15:21:32 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:32 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:32 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:32 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
15:21:32 DEBUG opendrift:738: Lifting 6 elements to seafloor.
15:21:32 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:32 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:32 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:32 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:32 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:32 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:32 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:32 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:32 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:32 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:32 INFO opendrift.models.chemicaldrift:1861: partitioning: [201, 0, 7, 292, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:32 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:32 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:32 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:32 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:32 DEBUG opendrift:2055: ======================================================================
15:21:32 INFO opendrift:2056: 2025-03-25 04:20:53.643886 - step 27 of 96 - 500 active elements (0 deactivated)
15:21:32 DEBUG opendrift:2062: 0 elements scheduled.
15:21:32 DEBUG opendrift:2064: ======================================================================
15:21:32 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.69684968161281
15:21:32 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.733712749658492
15:21:32 DEBUG opendrift:2085: -22.706361770629883 <- z -> -0.14972538915548694
15:21:32 DEBUG opendrift:2086: ---------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:32 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:32 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:32 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:32 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:32 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 04:00:00 (before)
2025-03-25 05:00:00 (after)
15:21:35 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:35 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:35 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:35 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:35 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:35 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:35 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 46x34x7) for time after (2025-03-25 05:00:00)
15:21:35 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 04:00:00) in space (linearNDFast)
15:21:35 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:35 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 05:00:00) in space (linearNDFast)
15:21:35 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:35 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 04:00:00, weight 0.65) and
after (2025-03-25 05:00:00, weight 0.35) in time
15:21:35 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:35 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.266298289784935 degrees.
15:21:35 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.266298289784935 degrees.
15:21:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:35 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:35 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:35 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:35 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:35 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:35 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:35 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:35 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:35 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:35 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0394154 (min) 0.204513 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0776148 (min) 0.315858 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.467523 (min) -0.436921 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.65883 (min) 6.91312 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: y_wind: 3.63377 (min) 4.27615 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 23.3995 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.37175 (min) 6.15118 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.2834 (min) 32.9702 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -8.59252e-05 (min) 5.59884e-05 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:35 DEBUG opendrift:694: No elements hit coastline.
15:21:35 DEBUG opendrift:738: Lifting 168 elements to seafloor.
15:21:35 DEBUG opendrift:1695: No elements to deactivate
15:21:35 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:35 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:35 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:35 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 5
15:21:35 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0]
15:21:35 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3]
15:21:35 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 264. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 37. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:35 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:35 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:35 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:35 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:35 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.04713278436062461
15:21:35 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:35 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:35 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:35 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
15:21:35 DEBUG opendrift:738: Lifting 5 elements to seafloor.
15:21:35 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:35 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:35 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:35 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:35 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:35 INFO opendrift.models.chemicaldrift:1861: partitioning: [196, 0, 7, 297, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:35 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:35 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:35 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:35 DEBUG opendrift:733: No elements hit seafloor.
15:21:35 DEBUG opendrift:2055: ======================================================================
15:21:35 INFO opendrift:2056: 2025-03-25 04:50:53.643886 - step 28 of 96 - 500 active elements (0 deactivated)
15:21:35 DEBUG opendrift:2062: 0 elements scheduled.
15:21:35 DEBUG opendrift:2064: ======================================================================
15:21:35 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.70060266055327
15:21:35 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.73371274965849
15:21:35 DEBUG opendrift:2085: -22.675275802612305 <- z -> -0.1764330903281428
15:21:35 DEBUG opendrift:2086: ---------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:35 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 04:00:00 (before)
2025-03-25 05:00:00 (after)
15:21:35 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 04:00:00) in space (linearNDFast)
15:21:35 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:35 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 05:00:00) in space (linearNDFast)
15:21:35 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:35 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 04:00:00, weight 0.15) and
after (2025-03-25 05:00:00, weight 0.85) in time
15:21:35 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:35 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.266298289784935 degrees.
15:21:35 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.266298289784935 degrees.
15:21:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:35 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:35 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:35 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:35 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:35 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:35 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:35 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:35 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:35 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:35 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:35 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0411878 (min) 0.208955 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.090396 (min) 0.281389 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.495516 (min) -0.463903 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.15286 (min) 6.12727 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: y_wind: 3.94877 (min) 4.68767 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 23.411 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.34869 (min) 6.15118 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.1245 (min) 32.9645 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -7.99574e-05 (min) 5.72781e-05 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:35 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:35 DEBUG opendrift:694: No elements hit coastline.
15:21:35 DEBUG opendrift:738: Lifting 176 elements to seafloor.
15:21:35 DEBUG opendrift:1695: No elements to deactivate
15:21:35 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:35 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:35 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:35 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:21:35 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0]
15:21:35 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3]
15:21:35 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 266. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 37. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:35 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:35 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:35 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:35 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:35 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.042562260923951274
15:21:35 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:35 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:35 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:35 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
15:21:35 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:21:35 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:35 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:35 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:35 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:35 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:35 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:35 INFO opendrift.models.chemicaldrift:1861: partitioning: [194, 0, 7, 299, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:35 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:35 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:35 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:35 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:21:35 DEBUG opendrift:2055: ======================================================================
15:21:35 INFO opendrift:2056: 2025-03-25 05:20:53.643886 - step 29 of 96 - 500 active elements (0 deactivated)
15:21:35 DEBUG opendrift:2062: 0 elements scheduled.
15:21:35 DEBUG opendrift:2064: ======================================================================
15:21:35 DEBUG opendrift:2075: 57.554731652379786 <- latitude -> 57.70515044130986
15:21:35 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.735012898680216
15:21:35 DEBUG opendrift:2085: -22.64829444885254 <- z -> -0.12346931919689075
15:21:35 DEBUG opendrift:2086: ---------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:35 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:35 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:35 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:35 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:35 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 05:00:00 (before)
2025-03-25 06:00:00 (after)
15:21:37 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:37 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:37 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:37 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:37 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:37 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:37 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 47x34x7) for time after (2025-03-25 06:00:00)
15:21:37 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 05:00:00) in space (linearNDFast)
15:21:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:37 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 06:00:00) in space (linearNDFast)
15:21:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:37 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 05:00:00, weight 0.65) and
after (2025-03-25 06:00:00, weight 0.35) in time
15:21:37 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.26499813624996 degrees.
15:21:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.26499813624996 degrees.
15:21:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:37 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:37 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:37 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:37 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0436743 (min) 0.224074 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0880081 (min) 0.28113 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.513416 (min) -0.479767 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.75939 (min) 5.58755 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: y_wind: 4.15871 (min) 4.95325 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 23.6996 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.37153 (min) 6.15118 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.3607 (min) 32.9579 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -8.43254e-05 (min) 5.63805e-05 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:37 DEBUG opendrift:694: No elements hit coastline.
15:21:37 DEBUG opendrift:738: Lifting 179 elements to seafloor.
15:21:37 DEBUG opendrift:1695: No elements to deactivate
15:21:37 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:37 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:37 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:37 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 5
15:21:37 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0]
15:21:37 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3]
15:21:37 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 271. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 37. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:37 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:37 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:37 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:37 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:37 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.040293952463338556
15:21:37 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:37 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:37 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:37 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
15:21:37 DEBUG opendrift:738: Lifting 5 elements to seafloor.
15:21:37 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:37 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:37 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:37 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:37 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:37 INFO opendrift.models.chemicaldrift:1861: partitioning: [189, 0, 7, 304, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:37 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:37 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:37 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:37 DEBUG opendrift:733: No elements hit seafloor.
15:21:37 DEBUG opendrift:2055: ======================================================================
15:21:37 INFO opendrift:2056: 2025-03-25 05:50:53.643886 - step 30 of 96 - 500 active elements (0 deactivated)
15:21:37 DEBUG opendrift:2062: 0 elements scheduled.
15:21:37 DEBUG opendrift:2064: ======================================================================
15:21:37 DEBUG opendrift:2075: 57.554731652379786 <- latitude -> 57.70921423383533
15:21:37 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.738375773489134
15:21:37 DEBUG opendrift:2085: -22.632431030273438 <- z -> -0.15552257079810683
15:21:37 DEBUG opendrift:2086: ---------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:37 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 05:00:00 (before)
2025-03-25 06:00:00 (after)
15:21:37 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 05:00:00) in space (linearNDFast)
15:21:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:37 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 06:00:00) in space (linearNDFast)
15:21:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:37 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 05:00:00, weight 0.15) and
after (2025-03-25 06:00:00, weight 0.85) in time
15:21:37 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.261635251213214 degrees.
15:21:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.261635251213214 degrees.
15:21:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:37 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:37 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:37 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:37 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0464719 (min) 0.221645 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0846915 (min) 0.276828 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.526916 (min) -0.490785 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.41495 (min) 5.12433 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: y_wind: 4.32288 (min) 5.26784 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 23.9881 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.34838 (min) 6.15118 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.1655 (min) 32.9533 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000104122 (min) 6.42638e-05 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:37 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:37 DEBUG opendrift:694: No elements hit coastline.
15:21:37 DEBUG opendrift:738: Lifting 188 elements to seafloor.
15:21:37 DEBUG opendrift:1695: No elements to deactivate
15:21:37 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:37 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:37 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:37 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 7
15:21:37 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0]
15:21:37 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3]
15:21:37 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 278. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 37. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:37 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:37 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:37 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:37 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:37 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.039031859742813695
15:21:37 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:37 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:37 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:37 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
15:21:37 DEBUG opendrift:738: Lifting 7 elements to seafloor.
15:21:37 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:37 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:37 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:37 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:37 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:37 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:37 INFO opendrift.models.chemicaldrift:1861: partitioning: [182, 0, 7, 311, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:37 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:37 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:37 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:37 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:37 DEBUG opendrift:2055: ======================================================================
15:21:37 INFO opendrift:2056: 2025-03-25 06:20:53.643886 - step 31 of 96 - 500 active elements (0 deactivated)
15:21:37 DEBUG opendrift:2062: 0 elements scheduled.
15:21:37 DEBUG opendrift:2064: ======================================================================
15:21:37 DEBUG opendrift:2075: 57.554731652379786 <- latitude -> 57.713236562887474
15:21:37 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.739809148366806
15:21:37 DEBUG opendrift:2085: -22.62141227722168 <- z -> 0.0
15:21:37 DEBUG opendrift:2086: ---------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:37 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 06:00:00 (before)
2025-03-25 07:00:00 (after)
15:21:40 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:40 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:40 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:40 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:40 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:40 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:40 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 48x34x7) for time after (2025-03-25 07:00:00)
15:21:40 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 06:00:00) in space (linearNDFast)
15:21:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:40 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 07:00:00) in space (linearNDFast)
15:21:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:40 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 06:00:00, weight 0.65) and
after (2025-03-25 07:00:00, weight 0.35) in time
15:21:40 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.260201878549594 degrees.
15:21:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.260201878549594 degrees.
15:21:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:40 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:40 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:40 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:40 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:40 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:40 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0527987 (min) 0.255672 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0769773 (min) 0.293483 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.525134 (min) -0.488077 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.40919 (min) 4.9814 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: y_wind: 4.54316 (min) 5.50614 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 24.2482 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.40293 (min) 6.15138 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.6662 (min) 32.9521 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000139585 (min) 7.32468e-05 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:40 DEBUG opendrift:694: No elements hit coastline.
15:21:40 DEBUG opendrift:733: No elements hit seafloor.
15:21:40 DEBUG opendrift:1695: No elements to deactivate
15:21:40 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:40 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:40 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:40 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 7
15:21:40 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0]
15:21:40 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3]
15:21:40 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 285. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 37. 0.]
[ 4. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:40 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:40 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:40 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:40 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:40 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.03984337427294364
15:21:40 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:40 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:40 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:40 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
15:21:40 DEBUG opendrift:738: Lifting 7 elements to seafloor.
15:21:40 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:40 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:40 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:40 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:40 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:40 INFO opendrift.models.chemicaldrift:1861: partitioning: [175, 0, 7, 318, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:40 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:40 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:40 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:40 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:40 DEBUG opendrift:2055: ======================================================================
15:21:40 INFO opendrift:2056: 2025-03-25 06:50:53.643886 - step 32 of 96 - 500 active elements (0 deactivated)
15:21:40 DEBUG opendrift:2062: 0 elements scheduled.
15:21:40 DEBUG opendrift:2064: ======================================================================
15:21:40 DEBUG opendrift:2075: 57.554731652379786 <- latitude -> 57.71671649041855
15:21:40 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.741879710788448
15:21:40 DEBUG opendrift:2085: -23.760120391845703 <- z -> -0.2480894694286273
15:21:40 DEBUG opendrift:2086: ---------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:40 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 06:00:00 (before)
2025-03-25 07:00:00 (after)
15:21:40 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 06:00:00) in space (linearNDFast)
15:21:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:40 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 07:00:00) in space (linearNDFast)
15:21:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:40 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 06:00:00, weight 0.15) and
after (2025-03-25 07:00:00, weight 0.85) in time
15:21:40 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.25813130947944 degrees.
15:21:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.25813130947944 degrees.
15:21:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:40 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:40 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:40 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:40 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:40 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:40 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0606637 (min) 0.193192 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0414311 (min) 0.257004 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.517925 (min) -0.477869 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.53496 (min) 4.98323 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: y_wind: 4.73572 (min) 5.71167 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 24.6716 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.40217 (min) 6.1531 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.6601 (min) 32.9572 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000197138 (min) 8.74655e-05 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:40 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:40 DEBUG opendrift:694: No elements hit coastline.
15:21:40 DEBUG opendrift:733: No elements hit seafloor.
15:21:40 DEBUG opendrift:1695: No elements to deactivate
15:21:40 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:40 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:40 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:40 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 8
15:21:40 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 3 3 3 0 0 0]
15:21:40 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 0 0 0 3 3 3]
15:21:40 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 290. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 37. 0.]
[ 7. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:40 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:40 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:40 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:40 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:40 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.04150537605540567
15:21:40 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:40 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:40 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:40 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
15:21:40 DEBUG opendrift:738: Lifting 5 elements to seafloor.
15:21:40 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 17 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 16 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:40 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:40 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:40 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:40 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:40 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:40 INFO opendrift.models.chemicaldrift:1861: partitioning: [173, 0, 7, 320, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:40 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:40 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:40 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:40 DEBUG opendrift:733: No elements hit seafloor.
15:21:40 DEBUG opendrift:2055: ======================================================================
15:21:40 INFO opendrift:2056: 2025-03-25 07:20:53.643886 - step 33 of 96 - 500 active elements (0 deactivated)
15:21:40 DEBUG opendrift:2062: 0 elements scheduled.
15:21:40 DEBUG opendrift:2064: ======================================================================
15:21:40 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.72008393304862
15:21:40 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.741879710788448
15:21:40 DEBUG opendrift:2085: -24.193727493286133 <- z -> -0.11342678636118386
15:21:40 DEBUG opendrift:2086: ---------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:40 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 07:00:00 (before)
2025-03-25 08:00:00 (after)
15:21:42 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:42 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:42 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:42 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:42 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:42 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:42 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 49x34x7) for time after (2025-03-25 08:00:00)
15:21:42 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 07:00:00) in space (linearNDFast)
15:21:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:42 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 08:00:00) in space (linearNDFast)
15:21:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:42 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 07:00:00, weight 0.65) and
after (2025-03-25 08:00:00, weight 0.35) in time
15:21:42 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.25813130947944 degrees.
15:21:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.25813130947944 degrees.
15:21:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:42 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:42 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:42 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:42 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:42 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:42 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.070716 (min) 0.192245 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.02689 (min) 0.231472 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.499755 (min) -0.455322 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.6178 (min) 4.96743 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: y_wind: 4.69121 (min) 5.75705 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 24.6716 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.40494 (min) 6.15365 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.663 (min) 32.9643 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000170681 (min) 9.2051e-05 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:42 DEBUG opendrift:694: No elements hit coastline.
15:21:42 DEBUG opendrift:733: No elements hit seafloor.
15:21:42 DEBUG opendrift:1695: No elements to deactivate
15:21:42 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:42 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:42 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:42 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4
15:21:42 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0]
15:21:42 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3]
15:21:42 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 294. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 37. 0.]
[ 7. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:42 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:42 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:42 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:42 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:42 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.041735244154199116
15:21:42 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:42 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:42 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:42 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
15:21:42 DEBUG opendrift:738: Lifting 4 elements to seafloor.
15:21:42 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:42 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:42 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:42 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:42 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:42 INFO opendrift.models.chemicaldrift:1861: partitioning: [169, 0, 7, 324, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:42 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:42 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:42 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:42 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:42 DEBUG opendrift:2055: ======================================================================
15:21:42 INFO opendrift:2056: 2025-03-25 07:50:53.643886 - step 34 of 96 - 500 active elements (0 deactivated)
15:21:42 DEBUG opendrift:2062: 0 elements scheduled.
15:21:42 DEBUG opendrift:2064: ======================================================================
15:21:42 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.722832826125476
15:21:42 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.741879710788448
15:21:42 DEBUG opendrift:2085: -24.193727493286133 <- z -> -0.32506462054563845
15:21:42 DEBUG opendrift:2086: ---------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:42 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 07:00:00 (before)
2025-03-25 08:00:00 (after)
15:21:42 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 07:00:00) in space (linearNDFast)
15:21:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:42 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 08:00:00) in space (linearNDFast)
15:21:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:42 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 07:00:00, weight 0.15) and
after (2025-03-25 08:00:00, weight 0.85) in time
15:21:42 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.25813130947944 degrees.
15:21:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.25813130947944 degrees.
15:21:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:42 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:42 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:42 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:42 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:42 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:42 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0817217 (min) 0.166153 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.00541406 (min) 0.219032 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.476879 (min) -0.426723 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.68589 (min) 4.97084 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: y_wind: 4.56175 (min) 5.73401 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 24.7831 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.39779 (min) 6.15365 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.6208 (min) 32.9684 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000175941 (min) 0.000106715 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:42 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:42 DEBUG opendrift:694: No elements hit coastline.
15:21:42 DEBUG opendrift:733: No elements hit seafloor.
15:21:42 DEBUG opendrift:1695: No elements to deactivate
15:21:42 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:42 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:42 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:42 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 5
15:21:42 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0]
15:21:42 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3]
15:21:42 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 299. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 37. 0.]
[ 7. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:42 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:42 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:42 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:42 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:42 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.041342350111649176
15:21:42 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:42 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:42 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:42 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
15:21:42 DEBUG opendrift:738: Lifting 5 elements to seafloor.
15:21:42 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:42 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:42 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:42 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:42 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:42 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:42 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:42 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:42 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:42 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:42 INFO opendrift.models.chemicaldrift:1861: partitioning: [164, 0, 5, 331, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:42 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:42 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:42 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:42 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:42 DEBUG opendrift:2055: ======================================================================
15:21:42 INFO opendrift:2056: 2025-03-25 08:20:53.643886 - step 35 of 96 - 500 active elements (0 deactivated)
15:21:42 DEBUG opendrift:2062: 0 elements scheduled.
15:21:42 DEBUG opendrift:2064: ======================================================================
15:21:42 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.72477441201771
15:21:42 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.742345593868793
15:21:42 DEBUG opendrift:2085: -24.193727493286133 <- z -> -0.4073292314475314
15:21:42 DEBUG opendrift:2086: ---------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:42 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 08:00:00 (before)
2025-03-25 09:00:00 (after)
15:21:45 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:45 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:45 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:45 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:45 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:45 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:45 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 50x34x7) for time after (2025-03-25 09:00:00)
15:21:45 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 08:00:00) in space (linearNDFast)
15:21:45 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:45 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 09:00:00) in space (linearNDFast)
15:21:45 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:45 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 08:00:00, weight 0.65) and
after (2025-03-25 09:00:00, weight 0.35) in time
15:21:45 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:45 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093406104 and -59.25766543802428 degrees.
15:21:45 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093406104 and -59.25766543802428 degrees.
15:21:45 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:45 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:45 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:45 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:45 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:45 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:45 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:45 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:45 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:45 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:45 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:45 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:45 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:45 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:45 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:45 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:45 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:45 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:45 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:45 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:45 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:45 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:45 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0898618 (min) 0.157393 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0443623 (min) 0.171326 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.441489 (min) -0.384373 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.68015 (min) 4.99397 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: y_wind: 4.5572 (min) 5.75308 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 25.6121 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.42585 (min) 6.15491 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.8182 (min) 32.9709 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000161341 (min) 0.000117981 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:45 DEBUG opendrift:694: No elements hit coastline.
15:21:45 DEBUG opendrift:733: No elements hit seafloor.
15:21:45 DEBUG opendrift:1695: No elements to deactivate
15:21:45 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:45 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:45 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:45 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6
15:21:45 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0]
15:21:45 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3]
15:21:45 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 305. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 39. 0.]
[ 7. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:45 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:45 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:45 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:45 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:45 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.041107398153813146
15:21:45 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:45 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:45 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:45 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
15:21:45 DEBUG opendrift:738: Lifting 6 elements to seafloor.
15:21:45 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:45 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:45 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:45 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:45 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:45 INFO opendrift.models.chemicaldrift:1861: partitioning: [158, 0, 5, 337, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:45 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:45 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:45 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:45 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:45 DEBUG opendrift:2055: ======================================================================
15:21:45 INFO opendrift:2056: 2025-03-25 08:50:53.643886 - step 36 of 96 - 500 active elements (0 deactivated)
15:21:45 DEBUG opendrift:2062: 0 elements scheduled.
15:21:45 DEBUG opendrift:2064: ======================================================================
15:21:45 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.72672498263705
15:21:45 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 10.743675599303605
15:21:45 DEBUG opendrift:2085: -24.193727493286133 <- z -> 0.0
15:21:45 DEBUG opendrift:2086: ---------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:45 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:45 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:45 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:45 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 08:00:00 (before)
2025-03-25 09:00:00 (after)
15:21:45 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 08:00:00) in space (linearNDFast)
15:21:45 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:45 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 09:00:00) in space (linearNDFast)
15:21:45 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:45 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 08:00:00, weight 0.15) and
after (2025-03-25 09:00:00, weight 0.85) in time
15:21:45 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:45 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.256335413172415 degrees.
15:21:45 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.256335413172415 degrees.
15:21:45 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:45 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:45 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:45 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:45 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:45 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:45 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:45 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:45 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:45 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:45 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:45 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:45 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:45 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:45 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:45 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:45 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:45 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:45 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:45 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:45 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:45 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:45 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0967531 (min) 0.165176 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.125269 (min) 0.138841 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.400246 (min) -0.337906 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.64222 (min) 5.02156 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: y_wind: 4.6071 (min) 5.82982 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 26.0218 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.41431 (min) 6.15918 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.6269 (min) 32.9733 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000140384 (min) 0.000127576 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:45 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:45 DEBUG opendrift:694: No elements hit coastline.
15:21:45 DEBUG opendrift:733: No elements hit seafloor.
15:21:45 DEBUG opendrift:1695: No elements to deactivate
15:21:45 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:45 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:45 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:45 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6
15:21:45 DEBUG opendrift.models.chemicaldrift:1452: old species: [3 0 0 0 0 0]
15:21:45 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3 3]
15:21:45 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 310. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 39. 0.]
[ 8. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:45 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:45 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:45 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:45 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:45 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.04177497945525764
15:21:45 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:45 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:45 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:45 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
15:21:45 DEBUG opendrift:738: Lifting 5 elements to seafloor.
15:21:45 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 15 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:45 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:45 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:45 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:45 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:45 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:45 INFO opendrift.models.chemicaldrift:1861: partitioning: [154, 0, 5, 341, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:45 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:45 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:45 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:45 DEBUG opendrift:733: No elements hit seafloor.
15:21:45 DEBUG opendrift:2055: ======================================================================
15:21:45 INFO opendrift:2056: 2025-03-25 09:20:53.643886 - step 37 of 96 - 500 active elements (0 deactivated)
15:21:45 DEBUG opendrift:2062: 0 elements scheduled.
15:21:45 DEBUG opendrift:2064: ======================================================================
15:21:45 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.72614786629157
15:21:45 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 10.748665517348414
15:21:45 DEBUG opendrift:2085: -24.193727493286133 <- z -> -0.05458029447520629
15:21:45 DEBUG opendrift:2086: ---------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:45 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:45 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:45 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:45 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:45 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 09:00:00 (before)
2025-03-25 10:00:00 (after)
15:21:47 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:47 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:47 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:47 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:47 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:47 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:47 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 50x34x7) for time after (2025-03-25 10:00:00)
15:21:47 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 09:00:00) in space (linearNDFast)
15:21:47 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:47 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 10:00:00) in space (linearNDFast)
15:21:47 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:47 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 09:00:00, weight 0.65) and
after (2025-03-25 10:00:00, weight 0.35) in time
15:21:47 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:47 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.251345504750404 degrees.
15:21:47 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.251345504750404 degrees.
15:21:47 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:47 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:47 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:47 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:47 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:47 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:47 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:47 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:47 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:47 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:47 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:47 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:47 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:47 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:47 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:47 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:47 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:47 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:47 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:47 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:47 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:47 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:47 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0999664 (min) 0.149337 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.148446 (min) 0.10026 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.348933 (min) -0.285693 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.81232 (min) 5.36271 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: y_wind: 4.24363 (min) 5.63041 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 26.5037 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.43592 (min) 6.16053 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.7704 (min) 32.9798 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000111458 (min) 0.000138066 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:47 DEBUG opendrift:694: No elements hit coastline.
15:21:47 DEBUG opendrift:733: No elements hit seafloor.
15:21:47 DEBUG opendrift:1695: No elements to deactivate
15:21:47 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:47 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:47 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:47 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4
15:21:47 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 3]
15:21:47 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 0]
15:21:47 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 313. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 39. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:47 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:47 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:47 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:47 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:47 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.0421390579023176
15:21:47 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:47 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:47 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:47 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
15:21:47 DEBUG opendrift:738: Lifting 3 elements to seafloor.
15:21:47 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:47 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:47 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:47 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:47 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:47 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:47 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:47 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:47 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:47 INFO opendrift.models.chemicaldrift:1861: partitioning: [152, 0, 3, 345, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:47 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:47 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:47 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:47 DEBUG opendrift:733: No elements hit seafloor.
15:21:47 DEBUG opendrift:2055: ======================================================================
15:21:47 INFO opendrift:2056: 2025-03-25 09:50:53.643886 - step 38 of 96 - 500 active elements (0 deactivated)
15:21:47 DEBUG opendrift:2062: 0 elements scheduled.
15:21:47 DEBUG opendrift:2064: ======================================================================
15:21:47 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.725160973640214
15:21:47 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 10.752440755100839
15:21:47 DEBUG opendrift:2085: -24.193727493286133 <- z -> -0.023476130932366668
15:21:47 DEBUG opendrift:2086: ---------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:47 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:47 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:47 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:47 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 09:00:00 (before)
2025-03-25 10:00:00 (after)
15:21:47 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 09:00:00) in space (linearNDFast)
15:21:47 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:47 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 10:00:00) in space (linearNDFast)
15:21:47 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:47 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 09:00:00, weight 0.15) and
after (2025-03-25 10:00:00, weight 0.85) in time
15:21:47 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:47 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24757027013399 degrees.
15:21:47 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24757027013399 degrees.
15:21:47 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:47 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:47 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:47 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:47 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:47 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:47 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:47 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:47 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:47 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:47 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:47 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:47 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:47 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:47 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:47 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:47 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:47 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:47 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:47 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:47 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:47 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:47 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.103313 (min) 0.126722 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.216881 (min) 0.074062 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.29323 (min) -0.231051 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.07309 (min) 5.94873 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: y_wind: 3.70001 (min) 5.28714 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 26.7327 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.42591 (min) 6.16265 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.566 (min) 32.9864 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -7.26112e-05 (min) 0.000161472 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:47 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:47 DEBUG opendrift:694: No elements hit coastline.
15:21:47 DEBUG opendrift:733: No elements hit seafloor.
15:21:47 DEBUG opendrift:1695: No elements to deactivate
15:21:47 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:47 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:47 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:47 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 5
15:21:47 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0]
15:21:47 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3]
15:21:47 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 318. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 41. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:47 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:47 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:47 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:47 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:47 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.04264161502096526
15:21:47 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:47 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:47 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:47 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
15:21:47 DEBUG opendrift:738: Lifting 5 elements to seafloor.
15:21:47 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:21:47 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:21:47 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:47 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:47 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:47 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:47 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:47 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:47 INFO opendrift.models.chemicaldrift:1861: partitioning: [147, 0, 2, 351, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:47 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:47 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:47 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:47 DEBUG opendrift:733: No elements hit seafloor.
15:21:47 DEBUG opendrift:2055: ======================================================================
15:21:47 INFO opendrift:2056: 2025-03-25 10:20:53.643886 - step 39 of 96 - 500 active elements (0 deactivated)
15:21:47 DEBUG opendrift:2062: 0 elements scheduled.
15:21:47 DEBUG opendrift:2064: ======================================================================
15:21:47 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.72326112983167
15:21:47 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 10.756268561458624
15:21:47 DEBUG opendrift:2085: -24.442540031943434 <- z -> -0.027165469416984278
15:21:47 DEBUG opendrift:2086: ---------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:47 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:47 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:47 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:47 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:47 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 10:00:00 (before)
2025-03-25 11:00:00 (after)
15:21:49 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:49 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:49 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:49 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:49 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:49 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:49 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 50x34x7) for time after (2025-03-25 11:00:00)
15:21:49 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 10:00:00) in space (linearNDFast)
15:21:49 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:49 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 11:00:00) in space (linearNDFast)
15:21:49 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:49 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 10:00:00, weight 0.65) and
after (2025-03-25 11:00:00, weight 0.35) in time
15:21:49 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:49 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093406104 and -59.24374245930882 degrees.
15:21:49 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093406104 and -59.24374245930882 degrees.
15:21:49 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:49 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:49 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:49 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:49 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:49 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:49 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:49 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:49 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:49 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:49 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:49 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:49 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:49 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:49 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:49 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:49 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:49 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:49 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:49 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:49 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:49 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:49 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:49 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:49 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:49 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:49 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:49 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:49 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:49 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.110552 (min) 0.0841869 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.30852 (min) 0.05772 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.236295 (min) -0.180319 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.50497 (min) 6.45931 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: y_wind: 3.43428 (min) 5.01057 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 26.7043 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.4253 (min) 6.16487 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.4807 (min) 33.0013 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -5.1021e-05 (min) 0.000257922 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:49 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:49 DEBUG opendrift:694: No elements hit coastline.
15:21:49 DEBUG opendrift:733: No elements hit seafloor.
15:21:49 DEBUG opendrift:1695: No elements to deactivate
15:21:49 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:49 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:49 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:49 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 9
15:21:49 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0]
15:21:49 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3]
15:21:49 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 327. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 42. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:49 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:49 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:49 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:49 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:49 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.043486506497892825
15:21:49 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:49 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:49 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:49 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:534: 9 elements reached seafloor, interacting with bottom
15:21:49 DEBUG opendrift:738: Lifting 9 elements to seafloor.
15:21:49 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:49 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:50 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:50 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:50 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:50 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:50 INFO opendrift.models.chemicaldrift:1861: partitioning: [138, 0, 2, 360, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:50 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:50 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:50 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:50 DEBUG opendrift:733: No elements hit seafloor.
15:21:50 DEBUG opendrift:2055: ======================================================================
15:21:50 INFO opendrift:2056: 2025-03-25 10:50:53.643886 - step 40 of 96 - 500 active elements (0 deactivated)
15:21:50 DEBUG opendrift:2062: 0 elements scheduled.
15:21:50 DEBUG opendrift:2064: ======================================================================
15:21:50 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.71867415799201
15:21:50 DEBUG opendrift:2080: 10.536750151872896 <- longitude -> 10.757645625638984
15:21:50 DEBUG opendrift:2085: -24.193727493286133 <- z -> -0.24796365103947204
15:21:50 DEBUG opendrift:2086: ---------------------------------
15:21:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:50 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 10:00:00 (before)
2025-03-25 11:00:00 (after)
15:21:50 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 10:00:00) in space (linearNDFast)
15:21:50 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:50 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 11:00:00) in space (linearNDFast)
15:21:50 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:50 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 10:00:00, weight 0.15) and
after (2025-03-25 11:00:00, weight 0.85) in time
15:21:50 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:50 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093406104 and -59.242365403937306 degrees.
15:21:50 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093406104 and -59.242365403937306 degrees.
15:21:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:50 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:50 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:50 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:50 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:50 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:50 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:50 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:50 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:50 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:50 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:50 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:50 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:50 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.151192 (min) 0.0851952 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.316254 (min) 0.0385123 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.178823 (min) -0.131485 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.99591 (min) 6.93455 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: y_wind: 3.28967 (min) 4.73988 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 26.3778 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.45574 (min) 6.168 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.6392 (min) 32.9995 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -2.53252e-05 (min) 0.000279365 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:50 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:50 DEBUG opendrift:694: No elements hit coastline.
15:21:50 DEBUG opendrift:733: No elements hit seafloor.
15:21:50 DEBUG opendrift:1695: No elements to deactivate
15:21:50 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:50 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:50 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:50 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 5
15:21:50 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0]
15:21:50 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3]
15:21:50 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 332. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 42. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:50 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:50 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:50 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:50 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:50 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.047294256903006975
15:21:50 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:50 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:50 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:50 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
15:21:50 DEBUG opendrift:738: Lifting 5 elements to seafloor.
15:21:50 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:50 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:50 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:50 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:50 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:50 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:50 INFO opendrift.models.chemicaldrift:1861: partitioning: [133, 0, 2, 365, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:50 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:50 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:50 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:50 DEBUG opendrift:733: No elements hit seafloor.
15:21:50 DEBUG opendrift:2055: ======================================================================
15:21:50 INFO opendrift:2056: 2025-03-25 11:20:53.643886 - step 41 of 96 - 500 active elements (0 deactivated)
15:21:50 DEBUG opendrift:2062: 0 elements scheduled.
15:21:50 DEBUG opendrift:2064: ======================================================================
15:21:50 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.71538431949304
15:21:50 DEBUG opendrift:2080: 10.536750151872896 <- longitude -> 10.758401757199254
15:21:50 DEBUG opendrift:2085: -24.193727493286133 <- z -> -0.029610498031036547
15:21:50 DEBUG opendrift:2086: ---------------------------------
15:21:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:50 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 11:00:00 (before)
2025-03-25 12:00:00 (after)
15:21:52 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:52 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:52 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:52 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:52 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:52 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:52 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 49x34x7) for time after (2025-03-25 12:00:00)
15:21:52 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 11:00:00) in space (linearNDFast)
15:21:52 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:52 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 12:00:00) in space (linearNDFast)
15:21:52 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:52 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 11:00:00, weight 0.65) and
after (2025-03-25 12:00:00, weight 0.35) in time
15:21:52 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:52 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093406104 and -59.24160925673732 degrees.
15:21:52 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093406104 and -59.24160925673732 degrees.
15:21:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:52 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:52 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:52 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:52 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:52 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:52 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:52 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:52 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:52 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:52 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:52 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:52 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:52 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:52 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.172916 (min) 0.08779 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.332345 (min) 0.0486352 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.132644 (min) -0.0975277 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.4161 (min) 7.59952 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.98111 (min) 4.4399 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 25.9855 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.45991 (min) 6.16977 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.572 (min) 33.004 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: 8.98547e-08 (min) 0.000319136 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:52 DEBUG opendrift:694: No elements hit coastline.
15:21:52 DEBUG opendrift:733: No elements hit seafloor.
15:21:52 DEBUG opendrift:1695: No elements to deactivate
15:21:52 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:52 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:52 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:52 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 8
15:21:52 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0]
15:21:52 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3]
15:21:52 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 340. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 42. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:52 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:52 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:52 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:52 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:52 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.053072098009479006
15:21:52 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:52 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:52 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:52 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:534: 8 elements reached seafloor, interacting with bottom
15:21:52 DEBUG opendrift:738: Lifting 8 elements to seafloor.
15:21:52 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:52 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:52 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:52 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:52 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:52 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:52 INFO opendrift.models.chemicaldrift:1861: partitioning: [125, 0, 2, 373, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:52 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:52 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:52 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:52 DEBUG opendrift:733: No elements hit seafloor.
15:21:52 DEBUG opendrift:2055: ======================================================================
15:21:52 INFO opendrift:2056: 2025-03-25 11:50:53.643886 - step 42 of 96 - 500 active elements (0 deactivated)
15:21:52 DEBUG opendrift:2062: 0 elements scheduled.
15:21:52 DEBUG opendrift:2064: ======================================================================
15:21:52 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.71538431949304
15:21:52 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.757675658490855
15:21:52 DEBUG opendrift:2085: -24.68871307373047 <- z -> 0.0
15:21:52 DEBUG opendrift:2086: ---------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:52 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:52 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 11:00:00 (before)
2025-03-25 12:00:00 (after)
15:21:52 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 11:00:00) in space (linearNDFast)
15:21:52 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:52 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 12:00:00) in space (linearNDFast)
15:21:52 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:52 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 11:00:00, weight 0.15) and
after (2025-03-25 12:00:00, weight 0.85) in time
15:21:52 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:52 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.242335361879555 degrees.
15:21:52 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.242335361879555 degrees.
15:21:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:52 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:52 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:52 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:52 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:52 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:52 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:52 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:52 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:52 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:52 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:52 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:52 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:52 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:52 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:52 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:52 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:52 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:52 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:52 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.194556 (min) 0.0873654 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.334363 (min) 0.0725722 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0913867 (min) -0.0689457 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.90403 (min) 8.36172 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.60111 (min) 4.13719 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 25.8292 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.46624 (min) 6.17264 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.4762 (min) 33.0076 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: 7.87429e-06 (min) 0.000377823 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:52 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:52 DEBUG opendrift:694: No elements hit coastline.
15:21:52 DEBUG opendrift:733: No elements hit seafloor.
15:21:53 DEBUG opendrift:1695: No elements to deactivate
15:21:53 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:53 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:53 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:53 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:21:53 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0]
15:21:53 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3]
15:21:53 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 342. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 42. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:53 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:53 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:53 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:53 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:53 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.060477095281225364
15:21:53 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:53 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:53 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:53 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
15:21:53 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:21:53 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:53 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:53 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:53 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:53 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:53 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:53 INFO opendrift.models.chemicaldrift:1861: partitioning: [123, 0, 2, 375, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:53 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:53 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:53 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:53 DEBUG opendrift:733: No elements hit seafloor.
15:21:53 DEBUG opendrift:2055: ======================================================================
15:21:53 INFO opendrift:2056: 2025-03-25 12:20:53.643886 - step 43 of 96 - 500 active elements (0 deactivated)
15:21:53 DEBUG opendrift:2062: 0 elements scheduled.
15:21:53 DEBUG opendrift:2064: ======================================================================
15:21:53 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.71538431949303
15:21:53 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.757822781814095
15:21:53 DEBUG opendrift:2085: -24.68871307373047 <- z -> -0.01890591942444253
15:21:53 DEBUG opendrift:2086: ---------------------------------
15:21:53 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:53 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:53 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:53 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:53 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:53 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:53 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:53 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 12:00:00 (before)
2025-03-25 13:00:00 (after)
15:21:55 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:55 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:55 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:55 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:55 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:55 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:55 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 49x34x7) for time after (2025-03-25 13:00:00)
15:21:55 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 12:00:00) in space (linearNDFast)
15:21:55 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:55 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 13:00:00) in space (linearNDFast)
15:21:55 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:55 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 12:00:00, weight 0.65) and
after (2025-03-25 13:00:00, weight 0.35) in time
15:21:55 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:55 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24218823407183 degrees.
15:21:55 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24218823407183 degrees.
15:21:55 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:55 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:55 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:55 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:55 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:55 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:55 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:55 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:55 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:55 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:55 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:55 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:55 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:55 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:55 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:55 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:55 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:55 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:55 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:55 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:55 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:55 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:55 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.200245 (min) 0.109502 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.302817 (min) 0.0940115 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0709019 (min) -0.0572305 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.14056 (min) 8.70435 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.65113 (min) 4.06048 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 25.9393 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.5081 (min) 6.17361 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.79 (min) 33.1832 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: 4.04296e-06 (min) 0.000369352 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:55 DEBUG opendrift:694: No elements hit coastline.
15:21:55 DEBUG opendrift:733: No elements hit seafloor.
15:21:55 DEBUG opendrift:1695: No elements to deactivate
15:21:55 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:55 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:55 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:55 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:21:55 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0]
15:21:55 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3]
15:21:55 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 344. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 42. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:55 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:55 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:55 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:55 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:55 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.06390259244320232
15:21:55 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:55 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:55 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:55 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
15:21:55 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:55 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:55 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:55 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:55 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:55 INFO opendrift.models.chemicaldrift:1861: partitioning: [121, 0, 2, 377, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:55 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:55 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:55 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:55 DEBUG opendrift:733: No elements hit seafloor.
15:21:55 DEBUG opendrift:2055: ======================================================================
15:21:55 INFO opendrift:2056: 2025-03-25 12:50:53.643886 - step 44 of 96 - 500 active elements (0 deactivated)
15:21:55 DEBUG opendrift:2062: 0 elements scheduled.
15:21:55 DEBUG opendrift:2064: ======================================================================
15:21:55 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.71538431949304
15:21:55 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.75679932325013
15:21:55 DEBUG opendrift:2085: -25.47066261594489 <- z -> 0.0
15:21:55 DEBUG opendrift:2086: ---------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:55 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:55 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:55 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:55 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 12:00:00 (before)
2025-03-25 13:00:00 (after)
15:21:55 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 12:00:00) in space (linearNDFast)
15:21:55 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:55 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 13:00:00) in space (linearNDFast)
15:21:55 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:55 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 12:00:00, weight 0.15) and
after (2025-03-25 13:00:00, weight 0.85) in time
15:21:55 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:55 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321170086258 degrees.
15:21:55 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321170086258 degrees.
15:21:55 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:55 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:55 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:55 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:55 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:55 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:55 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:55 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:55 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:55 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:55 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:55 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:55 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:55 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:55 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:55 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:55 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:55 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:55 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:55 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:55 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:55 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:55 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.216148 (min) 0.160222 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.260274 (min) 0.0998268 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0638279 (min) -0.0517405 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.26753 (min) 8.8449 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.88856 (min) 4.05994 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 25.8798 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.51116 (min) 6.28429 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.6383 (min) 33.6503 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -4.99254e-06 (min) 0.000330744 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:55 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:55 DEBUG opendrift:694: No elements hit coastline.
15:21:55 DEBUG opendrift:733: No elements hit seafloor.
15:21:55 DEBUG opendrift:1695: No elements to deactivate
15:21:55 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:55 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:55 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:55 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6
15:21:55 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0]
15:21:55 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3]
15:21:55 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 350. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 42. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:55 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:55 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:55 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:55 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:55 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.06511649794701035
15:21:55 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:55 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:55 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:55 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
15:21:55 DEBUG opendrift:738: Lifting 6 elements to seafloor.
15:21:55 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 13 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:55 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:55 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:55 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:55 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:55 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:55 INFO opendrift.models.chemicaldrift:1861: partitioning: [115, 0, 2, 383, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:55 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:55 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:55 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:55 DEBUG opendrift:733: No elements hit seafloor.
15:21:55 DEBUG opendrift:2055: ======================================================================
15:21:55 INFO opendrift:2056: 2025-03-25 13:20:53.643886 - step 45 of 96 - 500 active elements (0 deactivated)
15:21:55 DEBUG opendrift:2062: 0 elements scheduled.
15:21:55 DEBUG opendrift:2064: ======================================================================
15:21:55 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.71538431949304
15:21:55 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.75679932325013
15:21:55 DEBUG opendrift:2085: -25.81856918334961 <- z -> 0.0
15:21:55 DEBUG opendrift:2086: ---------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:55 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:55 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:55 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:55 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:55 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 13:00:00 (before)
2025-03-25 14:00:00 (after)
15:21:57 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:21:57 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:21:57 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:21:57 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:21:57 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:21:57 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:21:57 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 49x34x7) for time after (2025-03-25 14:00:00)
15:21:57 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 13:00:00) in space (linearNDFast)
15:21:57 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:57 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 14:00:00) in space (linearNDFast)
15:21:57 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:57 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 13:00:00, weight 0.65) and
after (2025-03-25 14:00:00, weight 0.35) in time
15:21:57 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:57 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321170086258 degrees.
15:21:57 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321170086258 degrees.
15:21:57 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:57 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:57 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:57 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:57 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:57 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:57 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:57 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:57 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:57 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:57 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:57 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:57 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:57 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:57 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:57 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:57 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:57 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:57 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:57 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:57 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:57 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:57 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:57 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:57 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:57 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:57 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:57 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:57 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:57 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.216267 (min) 0.180378 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.221021 (min) 0.132642 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0824844 (min) -0.0666144 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.55904 (min) 9.50297 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.95401 (min) 3.78923 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 25.8798 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.52394 (min) 6.35308 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.6466 (min) 33.7904 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -1.19617e-05 (min) 0.000261628 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:57 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:57 DEBUG opendrift:694: No elements hit coastline.
15:21:57 DEBUG opendrift:738: Lifting 8 elements to seafloor.
15:21:57 DEBUG opendrift:1695: No elements to deactivate
15:21:57 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:57 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:57 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:58 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 5
15:21:58 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0]
15:21:58 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3]
15:21:58 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 355. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 42. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:58 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:58 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:58 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:58 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:58 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.07205359307258266
15:21:58 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:58 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:58 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:58 DEBUG opendrift.models.oceandrift:534: 5 elements reached seafloor, interacting with bottom
15:21:58 DEBUG opendrift:738: Lifting 5 elements to seafloor.
15:21:58 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:58 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:58 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:58 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:58 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:58 INFO opendrift.models.chemicaldrift:1861: partitioning: [110, 0, 2, 388, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:58 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:58 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:58 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:58 DEBUG opendrift:733: No elements hit seafloor.
15:21:58 DEBUG opendrift:2055: ======================================================================
15:21:58 INFO opendrift:2056: 2025-03-25 13:50:53.643886 - step 46 of 96 - 500 active elements (0 deactivated)
15:21:58 DEBUG opendrift:2062: 0 elements scheduled.
15:21:58 DEBUG opendrift:2064: ======================================================================
15:21:58 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.71538431949304
15:21:58 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.75679932325013
15:21:58 DEBUG opendrift:2085: -25.79998779296875 <- z -> -0.07077247248068974
15:21:58 DEBUG opendrift:2086: ---------------------------------
15:21:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:58 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:58 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 13:00:00 (before)
2025-03-25 14:00:00 (after)
15:21:58 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 13:00:00) in space (linearNDFast)
15:21:58 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:58 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 14:00:00) in space (linearNDFast)
15:21:58 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:21:58 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 13:00:00, weight 0.15) and
after (2025-03-25 14:00:00, weight 0.85) in time
15:21:58 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:21:58 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321170086258 degrees.
15:21:58 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321170086258 degrees.
15:21:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:21:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:21:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:58 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:21:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:58 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:21:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:21:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:58 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:21:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:21:58 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:21:58 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:21:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:21:58 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:21:58 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:21:58 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:21:58 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:21:58 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:21:58 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:21:58 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:21:58 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.226237 (min) 0.239285 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.169214 (min) 0.186693 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.110756 (min) -0.0876406 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.8995 (min) 10.3833 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.55706 (min) 3.71374 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 25.8798 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.59484 (min) 6.41336 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 25.1068 (min) 33.9062 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -1.84449e-05 (min) 0.000253843 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:21:58 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:21:58 DEBUG opendrift:694: No elements hit coastline.
15:21:58 DEBUG opendrift:738: Lifting 18 elements to seafloor.
15:21:58 DEBUG opendrift:1695: No elements to deactivate
15:21:58 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:21:58 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:21:58 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:21:58 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 7
15:21:58 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0]
15:21:58 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3]
15:21:58 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 362. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 42. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:21:58 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:58 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:58 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:21:58 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:21:58 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.08263633057850643
15:21:58 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:21:58 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:21:58 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:21:58 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
15:21:58 DEBUG opendrift:738: Lifting 7 elements to seafloor.
15:21:58 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:21:58 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:21:58 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:21:58 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:21:58 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:21:58 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:21:58 INFO opendrift.models.chemicaldrift:1861: partitioning: [103, 0, 2, 395, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:21:58 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:21:58 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:21:58 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:21:58 DEBUG opendrift:733: No elements hit seafloor.
15:21:58 DEBUG opendrift:2055: ======================================================================
15:21:58 INFO opendrift:2056: 2025-03-25 14:20:53.643886 - step 47 of 96 - 500 active elements (0 deactivated)
15:21:58 DEBUG opendrift:2062: 0 elements scheduled.
15:21:58 DEBUG opendrift:2064: ======================================================================
15:21:58 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.71538431949304
15:21:58 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.756799323250128
15:21:58 DEBUG opendrift:2085: -25.773157119750977 <- z -> -0.08469016366521864
15:21:58 DEBUG opendrift:2086: ---------------------------------
15:21:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:21:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:21:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:21:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:21:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:21:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:21:58 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:21:58 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 14:00:00 (before)
2025-03-25 15:00:00 (after)
15:22:00 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:00 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:00 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:00 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:00 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:00 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:00 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 49x34x7) for time after (2025-03-25 15:00:00)
15:22:00 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 14:00:00) in space (linearNDFast)
15:22:00 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:00 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 15:00:00) in space (linearNDFast)
15:22:00 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:00 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 14:00:00, weight 0.65) and
after (2025-03-25 15:00:00, weight 0.35) in time
15:22:00 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:00 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321169205744 degrees.
15:22:00 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321169205744 degrees.
15:22:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:00 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:00 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:00 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:00 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:00 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:00 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:00 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:00 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:00 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:00 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:00 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:00 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.227658 (min) 0.310227 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.109253 (min) 0.221298 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.151723 (min) -0.124639 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.50987 (min) 10.667 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: y_wind: 2.34124 (min) 3.05287 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 25.8798 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.55458 (min) 6.45028 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.7481 (min) 33.9691 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -2.30034e-05 (min) 0.000203059 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:00 DEBUG opendrift:694: No elements hit coastline.
15:22:00 DEBUG opendrift:738: Lifting 32 elements to seafloor.
15:22:00 DEBUG opendrift:1695: No elements to deactivate
15:22:00 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:00 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:00 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:00 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3
15:22:00 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0]
15:22:00 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3]
15:22:00 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 365. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 42. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:00 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:00 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:00 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:00 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:00 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.08621305136425421
15:22:00 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:00 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:00 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:00 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
15:22:00 DEBUG opendrift:738: Lifting 3 elements to seafloor.
15:22:00 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:00 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:00 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:00 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:00 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:00 INFO opendrift.models.chemicaldrift:1861: partitioning: [100, 0, 2, 398, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:00 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:00 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:00 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:00 DEBUG opendrift:733: No elements hit seafloor.
15:22:00 DEBUG opendrift:2055: ======================================================================
15:22:00 INFO opendrift:2056: 2025-03-25 14:50:53.643886 - step 48 of 96 - 500 active elements (0 deactivated)
15:22:00 DEBUG opendrift:2062: 0 elements scheduled.
15:22:00 DEBUG opendrift:2064: ======================================================================
15:22:00 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.71538431949304
15:22:00 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.75679932325013
15:22:00 DEBUG opendrift:2085: -25.73606300354004 <- z -> 0.0
15:22:00 DEBUG opendrift:2086: ---------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:00 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:00 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 14:00:00 (before)
2025-03-25 15:00:00 (after)
15:22:00 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 14:00:00) in space (linearNDFast)
15:22:00 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:00 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 15:00:00) in space (linearNDFast)
15:22:00 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:00 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 14:00:00, weight 0.15) and
after (2025-03-25 15:00:00, weight 0.85) in time
15:22:00 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:00 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321169205744 degrees.
15:22:00 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321169205744 degrees.
15:22:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:00 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:00 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:00 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:00 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:00 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:00 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:00 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:00 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:00 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:00 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:00 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:00 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.222773 (min) 0.392077 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0572105 (min) 0.212337 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.198223 (min) -0.168598 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.23788 (min) 10.7181 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.99937 (min) 2.47903 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 25.8798 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.56872 (min) 6.47701 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.7624 (min) 34.0089 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -2.79729e-05 (min) 0.000203892 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:00 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:00 DEBUG opendrift:694: No elements hit coastline.
15:22:00 DEBUG opendrift:738: Lifting 38 elements to seafloor.
15:22:00 DEBUG opendrift:1695: No elements to deactivate
15:22:00 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:00 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:00 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:00 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 7
15:22:00 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0]
15:22:00 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3]
15:22:00 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 372. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 42. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:00 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:00 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:00 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:00 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:00 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.08680470664308079
15:22:00 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:00 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:00 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:00 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
15:22:00 DEBUG opendrift:738: Lifting 7 elements to seafloor.
15:22:00 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:00 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:22:00 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:00 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:00 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:00 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:00 INFO opendrift.models.chemicaldrift:1861: partitioning: [93, 0, 2, 405, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:00 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:00 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:00 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:00 DEBUG opendrift:733: No elements hit seafloor.
15:22:00 DEBUG opendrift:2055: ======================================================================
15:22:00 INFO opendrift:2056: 2025-03-25 15:20:53.643886 - step 49 of 96 - 500 active elements (0 deactivated)
15:22:00 DEBUG opendrift:2062: 0 elements scheduled.
15:22:00 DEBUG opendrift:2064: ======================================================================
15:22:00 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.71538431949304
15:22:00 DEBUG opendrift:2080: 10.536750151872905 <- longitude -> 10.75679932325013
15:22:00 DEBUG opendrift:2085: -25.694496154785156 <- z -> -0.1592506650813318
15:22:00 DEBUG opendrift:2086: ---------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:00 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:00 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 15:00:00 (before)
2025-03-25 16:00:00 (after)
15:22:02 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:02 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:02 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:02 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:02 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:02 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:02 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 49x34x7) for time after (2025-03-25 16:00:00)
15:22:02 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 15:00:00) in space (linearNDFast)
15:22:02 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:02 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 16:00:00) in space (linearNDFast)
15:22:02 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:02 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 15:00:00, weight 0.65) and
after (2025-03-25 16:00:00, weight 0.35) in time
15:22:02 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:02 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321169205744 degrees.
15:22:02 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321169205744 degrees.
15:22:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:02 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:02 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:02 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:02 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:02 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:02 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:02 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:02 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:02 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:02 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:02 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:02 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:02 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:02 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:02 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:02 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:02 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:02 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:02 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:02 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:02 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:02 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:02 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:02 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:02 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:02 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:02 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:02 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.212149 (min) 0.386527 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0201243 (min) 0.28412 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.245331 (min) -0.216058 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: x_wind: 9.11969 (min) 10.5108 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.75285 (min) 2.27584 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 25.8798 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.61124 (min) 6.48681 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 25.083 (min) 34.0228 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -2.61591e-05 (min) 0.000200876 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:02 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:02 DEBUG opendrift:694: No elements hit coastline.
15:22:02 DEBUG opendrift:738: Lifting 55 elements to seafloor.
15:22:03 DEBUG opendrift:1695: No elements to deactivate
15:22:03 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:03 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:03 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:03 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3
15:22:03 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0]
15:22:03 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3]
15:22:03 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 375. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 42. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:03 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:03 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:03 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:03 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:03 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.08337531185583787
15:22:03 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:03 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:03 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:03 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
15:22:03 DEBUG opendrift:738: Lifting 3 elements to seafloor.
15:22:03 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 11 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:03 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:03 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:03 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:03 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:03 INFO opendrift.models.chemicaldrift:1861: partitioning: [90, 0, 2, 408, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:03 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:03 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:03 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:03 DEBUG opendrift:733: No elements hit seafloor.
15:22:03 DEBUG opendrift:2055: ======================================================================
15:22:03 INFO opendrift:2056: 2025-03-25 15:50:53.643886 - step 50 of 96 - 500 active elements (0 deactivated)
15:22:03 DEBUG opendrift:2062: 0 elements scheduled.
15:22:03 DEBUG opendrift:2064: ======================================================================
15:22:03 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.71648762259539
15:22:03 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.756799323250126
15:22:03 DEBUG opendrift:2085: -25.651630401611328 <- z -> -0.01903144302938653
15:22:03 DEBUG opendrift:2086: ---------------------------------
15:22:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:03 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:03 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 15:00:00 (before)
2025-03-25 16:00:00 (after)
15:22:03 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 15:00:00) in space (linearNDFast)
15:22:03 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:03 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 16:00:00) in space (linearNDFast)
15:22:03 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:03 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 15:00:00, weight 0.15) and
after (2025-03-25 16:00:00, weight 0.85) in time
15:22:03 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:03 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321169205744 degrees.
15:22:03 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321169205744 degrees.
15:22:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:03 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:03 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:03 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:03 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:03 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:03 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:03 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:03 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:03 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:03 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:03 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:03 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:03 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.200784 (min) 0.455559 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.012161 (min) 0.332529 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.292704 (min) -0.262966 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.69285 (min) 10.1799 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.6424 (min) 2.31037 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 25.8798 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.61703 (min) 6.48922 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 25.0991 (min) 34.0254 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -2.7836e-05 (min) 0.000203423 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:03 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:03 DEBUG opendrift:694: No elements hit coastline.
15:22:03 DEBUG opendrift:738: Lifting 64 elements to seafloor.
15:22:03 DEBUG opendrift:1695: No elements to deactivate
15:22:03 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:03 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:03 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:03 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:22:03 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0]
15:22:03 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3]
15:22:03 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 377. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 42. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:03 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:03 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:03 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:03 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:03 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.07807148411776398
15:22:03 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:03 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:03 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:03 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
15:22:03 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:22:03 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:03 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:03 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:03 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:03 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:03 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:03 INFO opendrift.models.chemicaldrift:1861: partitioning: [88, 0, 2, 410, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:03 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:03 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:03 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:03 DEBUG opendrift:733: No elements hit seafloor.
15:22:03 DEBUG opendrift:2055: ======================================================================
15:22:03 INFO opendrift:2056: 2025-03-25 16:20:53.643886 - step 51 of 96 - 500 active elements (0 deactivated)
15:22:03 DEBUG opendrift:2062: 0 elements scheduled.
15:22:03 DEBUG opendrift:2064: ======================================================================
15:22:03 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.72186189568355
15:22:03 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.756799323250123
15:22:03 DEBUG opendrift:2085: -25.608198165893555 <- z -> -0.03292672337911484
15:22:03 DEBUG opendrift:2086: ---------------------------------
15:22:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:03 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:03 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 16:00:00 (before)
2025-03-25 17:00:00 (after)
15:22:05 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:05 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:05 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:05 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:05 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:05 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:05 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 49x34x7) for time after (2025-03-25 17:00:00)
15:22:05 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 16:00:00) in space (linearNDFast)
15:22:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:05 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 17:00:00) in space (linearNDFast)
15:22:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:05 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 16:00:00, weight 0.65) and
after (2025-03-25 17:00:00, weight 0.35) in time
15:22:05 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321168954801 degrees.
15:22:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321168954801 degrees.
15:22:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:05 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:05 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:05 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:05 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:05 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:05 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:05 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:05 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.186638 (min) 0.425186 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0286487 (min) 0.366656 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.334544 (min) -0.302167 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.48344 (min) 10.2041 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.37439 (min) 2.03436 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 25.8798 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.64007 (min) 6.4902 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 25.6438 (min) 34.0221 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -3.43207e-05 (min) 0.000375522 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:05 DEBUG opendrift:694: No elements hit coastline.
15:22:05 DEBUG opendrift:738: Lifting 67 elements to seafloor.
15:22:05 DEBUG opendrift:1695: No elements to deactivate
15:22:05 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:05 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:05 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:05 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:22:05 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0]
15:22:05 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3]
15:22:05 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 379. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 42. 0.]
[ 9. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:05 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:05 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:05 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:05 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:05 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.07794678129199863
15:22:05 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:05 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:05 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
15:22:05 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:22:05 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:05 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:05 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:05 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:05 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:05 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:05 INFO opendrift.models.chemicaldrift:1861: partitioning: [86, 0, 1, 413, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:05 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:05 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:05 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:05 DEBUG opendrift:733: No elements hit seafloor.
15:22:05 DEBUG opendrift:2055: ======================================================================
15:22:05 INFO opendrift:2056: 2025-03-25 16:50:53.643886 - step 52 of 96 - 500 active elements (0 deactivated)
15:22:05 DEBUG opendrift:2062: 0 elements scheduled.
15:22:05 DEBUG opendrift:2064: ======================================================================
15:22:05 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.72673816184494
15:22:05 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.756799323250123
15:22:05 DEBUG opendrift:2085: -25.57063865661621 <- z -> 0.0
15:22:05 DEBUG opendrift:2086: ---------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:05 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:05 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 16:00:00 (before)
2025-03-25 17:00:00 (after)
15:22:05 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 16:00:00) in space (linearNDFast)
15:22:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:05 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 17:00:00) in space (linearNDFast)
15:22:05 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:05 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 16:00:00, weight 0.15) and
after (2025-03-25 17:00:00, weight 0.85) in time
15:22:05 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321168954801 degrees.
15:22:05 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321168954801 degrees.
15:22:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:05 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:05 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:05 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:05 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:05 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:05 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:05 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:05 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:05 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:05 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:05 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.170002 (min) 0.523654 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0382515 (min) 0.339891 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.374038 (min) -0.338194 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.35671 (min) 10.4323 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: y_wind: 1.00823 (min) 1.99196 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 25.8798 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.63934 (min) 6.49055 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 25.2591 (min) 34.0164 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -3.99477e-05 (min) 0.000363897 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:05 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:05 DEBUG opendrift:694: No elements hit coastline.
15:22:05 DEBUG opendrift:738: Lifting 75 elements to seafloor.
15:22:05 DEBUG opendrift:1695: No elements to deactivate
15:22:05 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:05 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:05 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:05 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4
15:22:05 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 3 0 0]
15:22:05 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0 3 3]
15:22:05 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 382. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 10. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:05 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:05 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:05 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:05 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:05 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.08006819800039973
15:22:05 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:05 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:05 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:05 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
15:22:05 DEBUG opendrift:738: Lifting 3 elements to seafloor.
15:22:05 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:05 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:05 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:05 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:05 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:05 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:05 INFO opendrift.models.chemicaldrift:1861: partitioning: [84, 0, 1, 415, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:05 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:05 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:05 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:05 DEBUG opendrift:733: No elements hit seafloor.
15:22:05 DEBUG opendrift:2055: ======================================================================
15:22:05 INFO opendrift:2056: 2025-03-25 17:20:53.643886 - step 53 of 96 - 500 active elements (0 deactivated)
15:22:05 DEBUG opendrift:2062: 0 elements scheduled.
15:22:05 DEBUG opendrift:2064: ======================================================================
15:22:05 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.731585180150994
15:22:05 DEBUG opendrift:2080: 10.536750151872903 <- longitude -> 10.756799323250123
15:22:05 DEBUG opendrift:2085: -25.5356388092041 <- z -> -0.12025037580336884
15:22:05 DEBUG opendrift:2086: ---------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:05 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:05 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:05 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:05 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:05 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 17:00:00 (before)
2025-03-25 18:00:00 (after)
15:22:07 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:07 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:07 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:07 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:07 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:07 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:07 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 50x34x7) for time after (2025-03-25 18:00:00)
15:22:07 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 17:00:00) in space (linearNDFast)
15:22:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:07 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 18:00:00) in space (linearNDFast)
15:22:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:07 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 17:00:00, weight 0.65) and
after (2025-03-25 18:00:00, weight 0.35) in time
15:22:07 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321169483109 degrees.
15:22:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321169483109 degrees.
15:22:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:07 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:07 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:07 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:07 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:07 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:07 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.149623 (min) 0.461427 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0381462 (min) 0.364179 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.403129 (min) -0.365148 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.32442 (min) 10.527 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.873988 (min) 1.95467 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 25.8798 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.70398 (min) 6.48908 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 25.7671 (min) 34.013 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -3.79376e-05 (min) 0.000408727 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:07 DEBUG opendrift:694: No elements hit coastline.
15:22:07 DEBUG opendrift:738: Lifting 81 elements to seafloor.
15:22:07 DEBUG opendrift:1695: No elements to deactivate
15:22:07 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:07 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:07 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:07 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4
15:22:07 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 3 0]
15:22:07 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 0 3]
15:22:07 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 385. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 11. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:07 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:07 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:07 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:07 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:07 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.08112989135228978
15:22:07 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:07 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:07 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:07 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
15:22:07 DEBUG opendrift:738: Lifting 3 elements to seafloor.
15:22:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:07 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:07 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:07 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:07 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:07 INFO opendrift.models.chemicaldrift:1861: partitioning: [82, 0, 1, 417, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:07 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:07 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:07 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:07 DEBUG opendrift:733: No elements hit seafloor.
15:22:07 DEBUG opendrift:2055: ======================================================================
15:22:07 INFO opendrift:2056: 2025-03-25 17:50:53.643886 - step 54 of 96 - 500 active elements (0 deactivated)
15:22:07 DEBUG opendrift:2062: 0 elements scheduled.
15:22:07 DEBUG opendrift:2064: ======================================================================
15:22:07 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.73747099833488
15:22:07 DEBUG opendrift:2080: 10.536750151872903 <- longitude -> 10.756799323250123
15:22:07 DEBUG opendrift:2085: -25.508441925048828 <- z -> -0.020906702877281802
15:22:07 DEBUG opendrift:2086: ---------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:07 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 17:00:00 (before)
2025-03-25 18:00:00 (after)
15:22:07 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 17:00:00) in space (linearNDFast)
15:22:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:07 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 18:00:00) in space (linearNDFast)
15:22:07 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:07 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 17:00:00, weight 0.15) and
after (2025-03-25 18:00:00, weight 0.85) in time
15:22:07 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.24321169734056 degrees.
15:22:07 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.24321169734056 degrees.
15:22:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:07 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:07 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:07 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:07 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:07 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:07 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:07 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:07 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:07 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:07 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.122317 (min) 0.448938 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0338099 (min) 0.315623 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.427687 (min) -0.388148 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.33522 (min) 10.5868 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.84082 (min) 1.88239 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 25.9877 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.65432 (min) 6.48682 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 25.4455 (min) 34.0107 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000236135 (min) 0.000382287 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:07 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:07 DEBUG opendrift:694: No elements hit coastline.
15:22:07 DEBUG opendrift:738: Lifting 85 elements to seafloor.
15:22:07 DEBUG opendrift:1695: No elements to deactivate
15:22:07 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:07 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:07 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:07 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 0
15:22:07 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:07 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.08183359629659795
15:22:07 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:07 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:07 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:07 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:07 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:07 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:07 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:07 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:07 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:07 INFO opendrift.models.chemicaldrift:1861: partitioning: [82, 0, 1, 417, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:07 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:07 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:07 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:07 DEBUG opendrift:733: No elements hit seafloor.
15:22:07 DEBUG opendrift:2055: ======================================================================
15:22:07 INFO opendrift:2056: 2025-03-25 18:20:53.643886 - step 55 of 96 - 500 active elements (0 deactivated)
15:22:07 DEBUG opendrift:2062: 0 elements scheduled.
15:22:07 DEBUG opendrift:2064: ======================================================================
15:22:07 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.73888812220339
15:22:07 DEBUG opendrift:2080: 10.536750151872905 <- longitude -> 10.756799323250128
15:22:07 DEBUG opendrift:2085: -25.484643936157227 <- z -> 0.0
15:22:07 DEBUG opendrift:2086: ---------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:07 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:07 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:07 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:07 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:07 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 18:00:00 (before)
2025-03-25 19:00:00 (after)
15:22:09 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:09 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:09 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:09 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:09 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:09 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:09 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 51x34x7) for time after (2025-03-25 19:00:00)
15:22:09 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 18:00:00) in space (linearNDFast)
15:22:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:09 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 19:00:00) in space (linearNDFast)
15:22:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:09 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 18:00:00, weight 0.65) and
after (2025-03-25 19:00:00, weight 0.35) in time
15:22:09 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321169734056 degrees.
15:22:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.24321169734056 degrees.
15:22:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:09 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:09 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:09 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:09 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:09 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:09 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0930762 (min) 0.480773 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0278374 (min) 0.342575 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.441025 (min) -0.40105 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.27769 (min) 10.4308 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.911105 (min) 1.78782 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 26.5522 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.64812 (min) 6.48867 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 25.457 (min) 34.011 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000294268 (min) 0.000324862 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:09 DEBUG opendrift:694: No elements hit coastline.
15:22:09 DEBUG opendrift:738: Lifting 88 elements to seafloor.
15:22:09 DEBUG opendrift:1695: No elements to deactivate
15:22:09 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:09 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:09 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:09 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3
15:22:09 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0]
15:22:09 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3]
15:22:09 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 388. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 11. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:09 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:09 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:09 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:09 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:09 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.07958259766993368
15:22:09 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:09 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:09 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
15:22:09 DEBUG opendrift:738: Lifting 3 elements to seafloor.
15:22:09 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 14 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:09 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:09 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:09 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:09 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:09 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:09 INFO opendrift.models.chemicaldrift:1861: partitioning: [79, 0, 1, 420, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:09 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:09 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:09 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:09 DEBUG opendrift:733: No elements hit seafloor.
15:22:09 DEBUG opendrift:2055: ======================================================================
15:22:09 INFO opendrift:2056: 2025-03-25 18:50:53.643886 - step 56 of 96 - 500 active elements (0 deactivated)
15:22:09 DEBUG opendrift:2062: 0 elements scheduled.
15:22:09 DEBUG opendrift:2064: ======================================================================
15:22:09 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.744424703415035
15:22:09 DEBUG opendrift:2080: 10.536750151872905 <- longitude -> 10.756799323250128
15:22:09 DEBUG opendrift:2085: -25.47117805480957 <- z -> 0.0
15:22:09 DEBUG opendrift:2086: ---------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:09 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 18:00:00 (before)
2025-03-25 19:00:00 (after)
15:22:09 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 18:00:00) in space (linearNDFast)
15:22:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:09 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 19:00:00) in space (linearNDFast)
15:22:09 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:09 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 18:00:00, weight 0.15) and
after (2025-03-25 19:00:00, weight 0.85) in time
15:22:09 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.243211687787 degrees.
15:22:09 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.243211687787 degrees.
15:22:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:09 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:09 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:09 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:09 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:09 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:09 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:09 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:09 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:09 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:09 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:09 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:09 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:09 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:09 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:09 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0778326 (min) 0.46596 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.021152 (min) 0.33022 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.449474 (min) -0.40955 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: x_wind: 8.16918 (min) 10.2201 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.953768 (min) 1.68353 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 29.109 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.6765 (min) 6.49231 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 25.8592 (min) 34.0125 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000420861 (min) 0.000324446 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:09 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:09 DEBUG opendrift:694: No elements hit coastline.
15:22:09 DEBUG opendrift:738: Lifting 92 elements to seafloor.
15:22:10 DEBUG opendrift:1695: No elements to deactivate
15:22:10 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:10 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:10 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:10 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4
15:22:10 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 3 3]
15:22:10 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 0 0]
15:22:10 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 390. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 13. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:10 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:10 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:10 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:10 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:10 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.07637744343196068
15:22:10 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:10 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:10 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:10 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
15:22:10 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:22:10 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 12 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:22:10 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:22:10 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:10 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:10 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:10 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:10 INFO opendrift.models.chemicaldrift:1861: partitioning: [79, 0, 1, 420, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:10 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:10 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:10 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:10 DEBUG opendrift:733: No elements hit seafloor.
15:22:10 DEBUG opendrift:2055: ======================================================================
15:22:10 INFO opendrift:2056: 2025-03-25 19:20:53.643886 - step 57 of 96 - 500 active elements (0 deactivated)
15:22:10 DEBUG opendrift:2062: 0 elements scheduled.
15:22:10 DEBUG opendrift:2064: ======================================================================
15:22:10 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.74753144000992
15:22:10 DEBUG opendrift:2080: 10.536750151872903 <- longitude -> 10.756799323250128
15:22:10 DEBUG opendrift:2085: -25.46221351623535 <- z -> 0.0
15:22:10 DEBUG opendrift:2086: ---------------------------------
15:22:10 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:10 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:10 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:10 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:10 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:10 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:10 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:10 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 19:00:00 (before)
2025-03-25 20:00:00 (after)
15:22:12 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:12 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:12 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:12 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:12 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:12 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:12 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 53x34x7) for time after (2025-03-25 20:00:00)
15:22:12 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 19:00:00) in space (linearNDFast)
15:22:12 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:12 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 20:00:00) in space (linearNDFast)
15:22:12 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:12 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 19:00:00, weight 0.65) and
after (2025-03-25 20:00:00, weight 0.35) in time
15:22:12 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:12 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.243211687787 degrees.
15:22:12 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.243211687787 degrees.
15:22:12 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:12 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:12 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:12 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:12 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:12 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:12 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:12 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:12 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:12 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:12 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:12 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:12 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:12 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:12 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:12 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:12 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:12 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:12 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:12 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:12 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:12 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:12 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:12 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:12 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:12 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:12 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:12 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:12 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:12 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0823876 (min) 0.423098 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0111475 (min) 0.296752 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.442359 (min) -0.402727 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.91432 (min) 9.96082 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.817312 (min) 1.46239 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 30.9292 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.68081 (min) 6.49438 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.0628 (min) 34.0103 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000462701 (min) 0.000298989 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:12 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:12 DEBUG opendrift:694: No elements hit coastline.
15:22:12 DEBUG opendrift:733: No elements hit seafloor.
15:22:12 DEBUG opendrift:1695: No elements to deactivate
15:22:12 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:12 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:12 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:12 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:22:12 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0]
15:22:12 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3]
15:22:12 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 392. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 13. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:12 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:12 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:12 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:12 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:12 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.07251076615790226
15:22:12 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:12 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:12 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:12 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
15:22:12 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:22:12 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:12 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:12 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:12 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:12 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:12 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:12 INFO opendrift.models.chemicaldrift:1861: partitioning: [77, 0, 1, 422, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:12 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:12 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:12 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:12 DEBUG opendrift:733: No elements hit seafloor.
15:22:12 DEBUG opendrift:2055: ======================================================================
15:22:12 INFO opendrift:2056: 2025-03-25 19:50:53.643886 - step 58 of 96 - 500 active elements (0 deactivated)
15:22:12 DEBUG opendrift:2062: 0 elements scheduled.
15:22:12 DEBUG opendrift:2064: ======================================================================
15:22:12 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.75020773157278
15:22:12 DEBUG opendrift:2080: 10.536750151872905 <- longitude -> 10.761153216451978
15:22:12 DEBUG opendrift:2085: -26.32074624146796 <- z -> -0.9450618697074076
15:22:12 DEBUG opendrift:2086: ---------------------------------
15:22:12 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:12 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:12 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:12 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:12 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:12 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:12 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:12 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 19:00:00 (before)
2025-03-25 20:00:00 (after)
15:22:12 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 19:00:00) in space (linearNDFast)
15:22:12 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:12 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 20:00:00) in space (linearNDFast)
15:22:12 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:12 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 19:00:00, weight 0.15) and
after (2025-03-25 20:00:00, weight 0.85) in time
15:22:12 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:13 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.23885780119862 degrees.
15:22:13 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326092506936 and -59.23885780119862 degrees.
15:22:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:13 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:13 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:13 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:13 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:13 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:13 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:13 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:13 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:13 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:13 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:13 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:13 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:13 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:13 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0875886 (min) 0.403154 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0142498 (min) 0.261931 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.429455 (min) -0.387925 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.63351 (min) 9.63674 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: y_wind: 0.581148 (min) 1.35245 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 33.5844 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.71347 (min) 6.73206 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.2043 (min) 34.1087 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00049045 (min) 0.000257791 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:13 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:13 DEBUG opendrift:694: No elements hit coastline.
15:22:13 DEBUG opendrift:733: No elements hit seafloor.
15:22:13 DEBUG opendrift:1695: No elements to deactivate
15:22:13 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:13 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:13 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:13 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:22:13 DEBUG opendrift.models.chemicaldrift:1452: old species: [0]
15:22:13 DEBUG opendrift.models.chemicaldrift:1453: new species: [3]
15:22:13 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 393. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 13. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:13 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:13 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:13 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:13 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:13 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.06774767743816043
15:22:13 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:13 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:13 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:13 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:22:13 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:13 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:13 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:13 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:13 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:13 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:13 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:13 INFO opendrift.models.chemicaldrift:1861: partitioning: [76, 0, 1, 423, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:13 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:13 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:13 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:13 DEBUG opendrift:733: No elements hit seafloor.
15:22:13 DEBUG opendrift:2055: ======================================================================
15:22:13 INFO opendrift:2056: 2025-03-25 20:20:53.643886 - step 59 of 96 - 500 active elements (0 deactivated)
15:22:13 DEBUG opendrift:2062: 0 elements scheduled.
15:22:13 DEBUG opendrift:2064: ======================================================================
15:22:13 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.74997733711022
15:22:13 DEBUG opendrift:2080: 10.536750151872905 <- longitude -> 10.76222467845106
15:22:13 DEBUG opendrift:2085: -25.46221351623535 <- z -> -0.37165652277961914
15:22:13 DEBUG opendrift:2086: ---------------------------------
15:22:13 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:13 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:13 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:13 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:13 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:13 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:13 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:13 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 20:00:00 (before)
2025-03-25 21:00:00 (after)
15:22:15 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:15 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:15 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:15 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:15 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:15 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:15 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 53x34x7) for time after (2025-03-25 21:00:00)
15:22:15 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 20:00:00) in space (linearNDFast)
15:22:15 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:15 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 21:00:00) in space (linearNDFast)
15:22:15 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:15 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 20:00:00, weight 0.65) and
after (2025-03-25 21:00:00, weight 0.35) in time
15:22:15 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:15 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.23778636073247 degrees.
15:22:15 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.23778636073247 degrees.
15:22:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:15 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:15 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:15 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:15 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:15 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:15 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:15 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:15 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:15 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:15 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:15 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:15 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0910751 (min) 0.362419 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0411368 (min) 0.238875 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.398498 (min) -0.357798 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.39959 (min) 8.8165 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: y_wind: -0.361642 (min) 0.791184 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 34.0843 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.67793 (min) 6.71891 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.2354 (min) 34.068 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000439278 (min) 0.000207254 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:15 DEBUG opendrift:694: No elements hit coastline.
15:22:15 DEBUG opendrift:733: No elements hit seafloor.
15:22:15 DEBUG opendrift:1695: No elements to deactivate
15:22:15 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:15 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:15 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:15 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:22:15 DEBUG opendrift.models.chemicaldrift:1452: old species: [3 0]
15:22:15 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3]
15:22:15 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 394. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 14. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:15 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:15 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:15 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:15 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:15 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.05619218940038813
15:22:15 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:15 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:15 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:22:15 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:15 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:15 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:15 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:15 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:15 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:15 INFO opendrift.models.chemicaldrift:1861: partitioning: [76, 0, 1, 423, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:15 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:15 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:15 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:15 DEBUG opendrift:733: No elements hit seafloor.
15:22:15 DEBUG opendrift:2055: ======================================================================
15:22:15 INFO opendrift:2056: 2025-03-25 20:50:53.643886 - step 60 of 96 - 500 active elements (0 deactivated)
15:22:15 DEBUG opendrift:2062: 0 elements scheduled.
15:22:15 DEBUG opendrift:2064: ======================================================================
15:22:15 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.74931239959568
15:22:15 DEBUG opendrift:2080: 10.536750151872905 <- longitude -> 10.76894039794552
15:22:15 DEBUG opendrift:2085: -25.46221351623535 <- z -> 0.0
15:22:15 DEBUG opendrift:2086: ---------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:15 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:15 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 20:00:00 (before)
2025-03-25 21:00:00 (after)
15:22:15 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 20:00:00) in space (linearNDFast)
15:22:15 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:15 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 21:00:00) in space (linearNDFast)
15:22:15 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:15 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 20:00:00, weight 0.15) and
after (2025-03-25 21:00:00, weight 0.85) in time
15:22:15 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:15 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.23107062762544 degrees.
15:22:15 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.23107062762544 degrees.
15:22:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:15 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:15 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:15 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:15 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:15 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:15 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:15 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:15 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:15 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:15 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:15 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:15 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:15 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0938144 (min) 0.321543 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.155002 (min) 0.200494 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.359425 (min) -0.317777 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.1186 (min) 8.4743 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.57337 (min) 0.414837 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 34.3424 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.71514 (min) 6.66711 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.31 (min) 34.0754 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000472144 (min) 0.000182426 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:15 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:15 DEBUG opendrift:694: No elements hit coastline.
15:22:15 DEBUG opendrift:733: No elements hit seafloor.
15:22:15 DEBUG opendrift:1695: No elements to deactivate
15:22:15 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:15 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:15 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:15 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:22:15 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0]
15:22:15 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3]
15:22:15 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 396. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 14. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:15 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:15 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:15 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:15 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:15 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.056410237526907575
15:22:15 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:15 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:15 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:15 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
15:22:15 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:15 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:15 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:15 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:15 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:15 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:15 INFO opendrift.models.chemicaldrift:1861: partitioning: [74, 0, 1, 425, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:15 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:15 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:15 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:15 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:22:15 DEBUG opendrift:2055: ======================================================================
15:22:15 INFO opendrift:2056: 2025-03-25 21:20:53.643886 - step 61 of 96 - 500 active elements (0 deactivated)
15:22:15 DEBUG opendrift:2062: 0 elements scheduled.
15:22:15 DEBUG opendrift:2064: ======================================================================
15:22:15 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.74956408923896
15:22:15 DEBUG opendrift:2080: 10.536750151872905 <- longitude -> 10.777662172482055
15:22:15 DEBUG opendrift:2085: -28.403388962446048 <- z -> 0.0
15:22:15 DEBUG opendrift:2086: ---------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:15 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:15 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:15 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:15 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:15 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 21:00:00 (before)
2025-03-25 22:00:00 (after)
15:22:17 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:17 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:17 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:17 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:17 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:17 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:17 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 54x34x7) for time after (2025-03-25 22:00:00)
15:22:17 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 21:00:00) in space (linearNDFast)
15:22:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:17 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 22:00:00) in space (linearNDFast)
15:22:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:17 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 21:00:00, weight 0.65) and
after (2025-03-25 22:00:00, weight 0.35) in time
15:22:17 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.2223488483005 degrees.
15:22:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.2223488483005 degrees.
15:22:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:17 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:17 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:17 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:17 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:17 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:17 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:17 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:17 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0977196 (min) 0.365795 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.320853 (min) 0.147139 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.311945 (min) -0.269988 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.35705 (min) 8.63728 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.65966 (min) -0.687109 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 35.1823 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.70772 (min) 6.66481 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.1359 (min) 34.0623 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000279991 (min) 0.000163552 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:17 DEBUG opendrift:694: No elements hit coastline.
15:22:17 DEBUG opendrift:733: No elements hit seafloor.
15:22:17 DEBUG opendrift:1695: No elements to deactivate
15:22:17 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:17 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:17 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:17 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:22:17 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0]
15:22:17 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3]
15:22:17 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 398. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 14. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:17 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:17 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:17 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:17 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:17 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.06359148145254226
15:22:17 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:17 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:17 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:17 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
15:22:17 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:17 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:17 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:17 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:17 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:17 INFO opendrift.models.chemicaldrift:1861: partitioning: [72, 0, 1, 427, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:17 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:17 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:17 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:17 DEBUG opendrift:733: No elements hit seafloor.
15:22:17 DEBUG opendrift:2055: ======================================================================
15:22:17 INFO opendrift:2056: 2025-03-25 21:50:53.643886 - step 62 of 96 - 500 active elements (0 deactivated)
15:22:17 DEBUG opendrift:2062: 0 elements scheduled.
15:22:17 DEBUG opendrift:2064: ======================================================================
15:22:17 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.749784937132375
15:22:17 DEBUG opendrift:2080: 10.536750151872905 <- longitude -> 10.78352143143327
15:22:17 DEBUG opendrift:2085: -28.654239613624046 <- z -> -0.5248672668705187
15:22:17 DEBUG opendrift:2086: ---------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:17 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:17 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 21:00:00 (before)
2025-03-25 22:00:00 (after)
15:22:17 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 21:00:00) in space (linearNDFast)
15:22:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:17 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 22:00:00) in space (linearNDFast)
15:22:17 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:17 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 21:00:00, weight 0.15) and
after (2025-03-25 22:00:00, weight 0.85) in time
15:22:17 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.21648958955689 degrees.
15:22:17 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.21648958955689 degrees.
15:22:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:17 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:17 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:17 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:17 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:17 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:17 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:17 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:17 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:17 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:17 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:17 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.115701 (min) 0.320128 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.144317 (min) 0.101434 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.259985 (min) -0.217796 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.89874 (min) 8.99959 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.23756 (min) -2.11839 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 36.059 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.74778 (min) 6.61529 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.5384 (min) 33.9757 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000286813 (min) 0.000165819 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:17 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:17 DEBUG opendrift:694: No elements hit coastline.
15:22:17 DEBUG opendrift:733: No elements hit seafloor.
15:22:17 DEBUG opendrift:1695: No elements to deactivate
15:22:17 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:17 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:17 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:17 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:22:17 DEBUG opendrift.models.chemicaldrift:1452: old species: [0]
15:22:17 DEBUG opendrift.models.chemicaldrift:1453: new species: [3]
15:22:17 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 399. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 14. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:17 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:17 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:17 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:17 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:17 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.07150696525085962
15:22:17 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:17 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:17 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:22:17 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:17 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:17 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:17 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:17 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:17 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:17 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:17 INFO opendrift.models.chemicaldrift:1861: partitioning: [71, 0, 1, 428, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:17 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:17 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:17 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:17 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:17 DEBUG opendrift:2055: ======================================================================
15:22:17 INFO opendrift:2056: 2025-03-25 22:20:53.643886 - step 63 of 96 - 500 active elements (0 deactivated)
15:22:17 DEBUG opendrift:2062: 0 elements scheduled.
15:22:17 DEBUG opendrift:2064: ======================================================================
15:22:17 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.75041984135926
15:22:17 DEBUG opendrift:2080: 10.536750151872905 <- longitude -> 10.788628490212924
15:22:17 DEBUG opendrift:2085: -25.46221351623535 <- z -> -0.40400057394765543
15:22:17 DEBUG opendrift:2086: ---------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:17 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:17 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:17 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:17 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:17 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 22:00:00 (before)
2025-03-25 23:00:00 (after)
15:22:20 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:20 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:20 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:20 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:20 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:20 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:20 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 55x34x7) for time after (2025-03-25 23:00:00)
15:22:20 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 22:00:00) in space (linearNDFast)
15:22:20 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:20 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 23:00:00) in space (linearNDFast)
15:22:20 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:20 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 22:00:00, weight 0.65) and
after (2025-03-25 23:00:00, weight 0.35) in time
15:22:20 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:20 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.211382538305 degrees.
15:22:20 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.211382538305 degrees.
15:22:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:20 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:20 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:20 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:20 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:20 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:20 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:20 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:20 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:20 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:20 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.125962 (min) 0.344716 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.341533 (min) 0.0660417 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.204393 (min) -0.167114 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.71624 (min) 8.50228 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.69487 (min) -2.93119 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 37.1407 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.75881 (min) 6.53084 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.308 (min) 34.0671 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00021717 (min) 0.000200892 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:20 DEBUG opendrift:694: No elements hit coastline.
15:22:20 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:20 DEBUG opendrift:1695: No elements to deactivate
15:22:20 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:20 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:20 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:20 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:22:20 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0]
15:22:20 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3]
15:22:20 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 401. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 14. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:20 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:20 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:20 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:20 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:20 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.06814174006219863
15:22:20 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:20 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:20 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:20 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
15:22:20 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:22:20 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 10 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 9 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 8 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:20 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:20 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:20 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:20 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:20 INFO opendrift.models.chemicaldrift:1861: partitioning: [69, 0, 1, 430, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:20 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:20 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:20 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:20 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:20 DEBUG opendrift:2055: ======================================================================
15:22:20 INFO opendrift:2056: 2025-03-25 22:50:53.643886 - step 64 of 96 - 500 active elements (0 deactivated)
15:22:20 DEBUG opendrift:2062: 0 elements scheduled.
15:22:20 DEBUG opendrift:2064: ======================================================================
15:22:20 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.75142220977431
15:22:20 DEBUG opendrift:2080: 10.536750151872905 <- longitude -> 10.790920515621869
15:22:20 DEBUG opendrift:2085: -29.382949957580042 <- z -> -0.48338197520648696
15:22:20 DEBUG opendrift:2086: ---------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:20 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 22:00:00 (before)
2025-03-25 23:00:00 (after)
15:22:20 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 22:00:00) in space (linearNDFast)
15:22:20 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:20 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-25 23:00:00) in space (linearNDFast)
15:22:20 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:20 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 22:00:00, weight 0.15) and
after (2025-03-25 23:00:00, weight 0.85) in time
15:22:20 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:20 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.20909049367288 degrees.
15:22:20 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.20909049367288 degrees.
15:22:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:20 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:20 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:20 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:20 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:20 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:20 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:20 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:20 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:20 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:20 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:20 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.135565 (min) 0.294621 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.385942 (min) 0.0367366 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.147218 (min) -0.117155 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: x_wind: 7.02204 (min) 7.93144 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: y_wind: -5.08854 (min) -3.47445 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 38.3255 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.7285 (min) 6.6773 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.0841 (min) 34.0675 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000138235 (min) 0.000153438 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:20 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:20 DEBUG opendrift:694: No elements hit coastline.
15:22:20 DEBUG opendrift:733: No elements hit seafloor.
15:22:20 DEBUG opendrift:1695: No elements to deactivate
15:22:20 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:20 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:20 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:20 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3
15:22:20 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0]
15:22:20 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3]
15:22:20 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 404. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 14. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:20 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:20 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:20 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:20 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:20 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.060565250809206814
15:22:20 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:20 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:20 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:20 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
15:22:20 DEBUG opendrift:738: Lifting 3 elements to seafloor.
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:20 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:20 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:20 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:20 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:20 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:20 INFO opendrift.models.chemicaldrift:1861: partitioning: [66, 0, 1, 433, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:20 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:20 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:20 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:20 DEBUG opendrift:733: No elements hit seafloor.
15:22:20 DEBUG opendrift:2055: ======================================================================
15:22:20 INFO opendrift:2056: 2025-03-25 23:20:53.643886 - step 65 of 96 - 500 active elements (0 deactivated)
15:22:20 DEBUG opendrift:2062: 0 elements scheduled.
15:22:20 DEBUG opendrift:2064: ======================================================================
15:22:20 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.74893065578519
15:22:20 DEBUG opendrift:2080: 10.536750151872903 <- longitude -> 10.799826510884095
15:22:20 DEBUG opendrift:2085: -29.550969929321187 <- z -> -0.38058653843410717
15:22:20 DEBUG opendrift:2086: ---------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:20 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:20 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:20 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:20 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:20 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 23:00:00 (before)
2025-03-26 00:00:00 (after)
15:22:23 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:23 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:23 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:23 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:23 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:23 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:23 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 55x34x7) for time after (2025-03-26 00:00:00)
15:22:23 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 23:00:00) in space (linearNDFast)
15:22:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:23 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 00:00:00) in space (linearNDFast)
15:22:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:23 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 23:00:00, weight 0.65) and
after (2025-03-26 00:00:00, weight 0.35) in time
15:22:23 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:23 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.20018450423123 degrees.
15:22:23 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.20018450423123 degrees.
15:22:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:23 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:23 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:23 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:23 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:23 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:23 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:23 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:23 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:23 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:23 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:23 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:23 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:23 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:23 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.131601 (min) 0.227431 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.366311 (min) 0.0194743 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.103352 (min) -0.0793371 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.53626 (min) 7.69817 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: y_wind: -5.06613 (min) -2.97207 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 37.8565 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.71163 (min) 6.67284 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.0851 (min) 34.1073 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000169442 (min) 0.000133014 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:23 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:23 DEBUG opendrift:694: No elements hit coastline.
15:22:23 DEBUG opendrift:733: No elements hit seafloor.
15:22:23 DEBUG opendrift:1695: No elements to deactivate
15:22:23 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:23 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:23 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:23 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:22:23 DEBUG opendrift.models.chemicaldrift:1452: old species: [0]
15:22:23 DEBUG opendrift.models.chemicaldrift:1453: new species: [3]
15:22:23 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 405. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 14. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:23 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:23 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:23 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:23 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:23 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.056726545351255604
15:22:23 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:23 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:23 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:23 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:22:23 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:23 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:23 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:23 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:23 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:23 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:23 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:23 INFO opendrift.models.chemicaldrift:1861: partitioning: [65, 0, 1, 434, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:23 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:23 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:23 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:23 DEBUG opendrift:733: No elements hit seafloor.
15:22:23 DEBUG opendrift:2055: ======================================================================
15:22:23 INFO opendrift:2056: 2025-03-25 23:50:53.643886 - step 66 of 96 - 500 active elements (0 deactivated)
15:22:23 DEBUG opendrift:2062: 0 elements scheduled.
15:22:23 DEBUG opendrift:2064: ======================================================================
15:22:23 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.749156112013964
15:22:23 DEBUG opendrift:2080: 10.536750151872903 <- longitude -> 10.804953810395046
15:22:23 DEBUG opendrift:2085: -27.56474494934082 <- z -> -0.4633738355299002
15:22:23 DEBUG opendrift:2086: ---------------------------------
15:22:23 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:23 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:23 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:23 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:23 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:23 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:23 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:23 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-25 23:00:00 (before)
2025-03-26 00:00:00 (after)
15:22:23 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-25 23:00:00) in space (linearNDFast)
15:22:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:23 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 00:00:00) in space (linearNDFast)
15:22:23 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:23 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-25 23:00:00, weight 0.15) and
after (2025-03-26 00:00:00, weight 0.85) in time
15:22:23 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:23 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.195057194167056 degrees.
15:22:24 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.195057194167056 degrees.
15:22:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:24 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:24 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:24 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:24 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:24 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:24 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:24 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:24 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:24 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:24 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:24 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:24 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.126876 (min) 0.322032 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.265541 (min) 0.0181034 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0710941 (min) -0.0438471 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: x_wind: 6.14133 (min) 7.46654 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.90437 (min) -2.01398 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 38.1972 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.68112 (min) 6.66625 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.6291 (min) 34.1733 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000194846 (min) 0.000125075 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:24 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:24 DEBUG opendrift:694: No elements hit coastline.
15:22:24 DEBUG opendrift:733: No elements hit seafloor.
15:22:24 DEBUG opendrift:1695: No elements to deactivate
15:22:24 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:24 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:24 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:24 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:22:24 DEBUG opendrift.models.chemicaldrift:1452: old species: [0]
15:22:24 DEBUG opendrift.models.chemicaldrift:1453: new species: [3]
15:22:24 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 406. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 14. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:24 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:24 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:24 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:24 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:24 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.05412627148653523
15:22:24 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:24 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:24 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:24 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:22:24 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:24 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:24 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:24 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:24 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:24 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:24 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:24 INFO opendrift.models.chemicaldrift:1861: partitioning: [64, 0, 1, 435, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:24 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:24 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:24 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:24 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:24 DEBUG opendrift:2055: ======================================================================
15:22:24 INFO opendrift:2056: 2025-03-26 00:20:53.643886 - step 67 of 96 - 500 active elements (0 deactivated)
15:22:24 DEBUG opendrift:2062: 0 elements scheduled.
15:22:24 DEBUG opendrift:2064: ======================================================================
15:22:24 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.74631032007947
15:22:24 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.814687700961187
15:22:24 DEBUG opendrift:2085: -30.01708065126158 <- z -> -0.4050662374579751
15:22:24 DEBUG opendrift:2086: ---------------------------------
15:22:24 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:24 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:24 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:24 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:24 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:24 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:24 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:24 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 00:00:00 (before)
2025-03-26 01:00:00 (after)
15:22:26 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:26 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:26 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:26 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:26 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:26 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:26 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 55x34x7) for time after (2025-03-26 01:00:00)
15:22:26 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 00:00:00) in space (linearNDFast)
15:22:26 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:26 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 01:00:00) in space (linearNDFast)
15:22:26 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:26 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 00:00:00, weight 0.65) and
after (2025-03-26 01:00:00, weight 0.35) in time
15:22:26 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:26 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.185323299471484 degrees.
15:22:26 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.185323299471484 degrees.
15:22:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:26 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:26 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:26 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:26 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:26 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:26 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:26 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:26 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:26 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:26 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.102007 (min) 0.175955 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.294128 (min) 0.110311 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0615203 (min) -0.0279092 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.86623 (min) 7.05782 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: y_wind: -5.25733 (min) -2.37925 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 37.6219 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.70176 (min) 6.67821 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 27.2294 (min) 34.0988 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000193702 (min) 0.00012059 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:26 DEBUG opendrift:694: No elements hit coastline.
15:22:26 DEBUG opendrift:733: No elements hit seafloor.
15:22:26 DEBUG opendrift:1695: No elements to deactivate
15:22:26 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:26 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:26 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:26 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 5
15:22:26 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 3 0 0]
15:22:26 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3]
15:22:26 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 410. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 15. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:26 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:26 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:26 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:26 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:26 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.05359466223173382
15:22:26 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:26 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:26 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:534: 4 elements reached seafloor, interacting with bottom
15:22:26 DEBUG opendrift:738: Lifting 4 elements to seafloor.
15:22:26 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:26 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:26 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:26 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:26 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:26 INFO opendrift.models.chemicaldrift:1861: partitioning: [61, 0, 1, 438, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:26 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:26 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:26 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:26 DEBUG opendrift:733: No elements hit seafloor.
15:22:26 DEBUG opendrift:2055: ======================================================================
15:22:26 INFO opendrift:2056: 2025-03-26 00:50:53.643886 - step 68 of 96 - 500 active elements (0 deactivated)
15:22:26 DEBUG opendrift:2062: 0 elements scheduled.
15:22:26 DEBUG opendrift:2064: ======================================================================
15:22:26 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.74809304233209
15:22:26 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 10.820006445049382
15:22:26 DEBUG opendrift:2085: -27.56474494934082 <- z -> -0.7120771561961509
15:22:26 DEBUG opendrift:2086: ---------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:26 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 00:00:00 (before)
2025-03-26 01:00:00 (after)
15:22:26 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 00:00:00) in space (linearNDFast)
15:22:26 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:26 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 01:00:00) in space (linearNDFast)
15:22:26 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:26 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 00:00:00, weight 0.15) and
after (2025-03-26 01:00:00, weight 0.85) in time
15:22:26 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:26 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.18000456610898 degrees.
15:22:26 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.18000456610898 degrees.
15:22:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:26 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:26 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:26 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:26 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:26 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:26 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:26 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:26 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:26 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:26 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:26 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.116944 (min) 0.321346 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.216563 (min) 0.0643869 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0602765 (min) -0.01422 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.62312 (min) 6.5967 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: y_wind: -5.92882 (min) -3.32124 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 38.4355 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.65809 (min) 6.72399 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.2997 (min) 34.1167 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00020644 (min) 0.00022337 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:26 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:26 DEBUG opendrift:694: No elements hit coastline.
15:22:26 DEBUG opendrift:733: No elements hit seafloor.
15:22:26 DEBUG opendrift:1695: No elements to deactivate
15:22:26 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:26 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:26 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:26 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:22:26 DEBUG opendrift.models.chemicaldrift:1452: old species: [0]
15:22:26 DEBUG opendrift.models.chemicaldrift:1453: new species: [3]
15:22:26 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 411. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 15. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:26 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:26 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:26 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:26 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:26 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.05487236663606861
15:22:26 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:26 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:26 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:22:26 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:26 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:26 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:26 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:26 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:26 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:26 INFO opendrift.models.chemicaldrift:1861: partitioning: [60, 0, 1, 439, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:26 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:26 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:26 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:26 DEBUG opendrift:733: No elements hit seafloor.
15:22:26 DEBUG opendrift:2055: ======================================================================
15:22:26 INFO opendrift:2056: 2025-03-26 01:20:53.643886 - step 69 of 96 - 500 active elements (0 deactivated)
15:22:26 DEBUG opendrift:2062: 0 elements scheduled.
15:22:26 DEBUG opendrift:2064: ======================================================================
15:22:26 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.74634852418052
15:22:26 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 10.82971959460684
15:22:26 DEBUG opendrift:2085: -30.394398733340168 <- z -> -0.5860015277792835
15:22:26 DEBUG opendrift:2086: ---------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:26 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:26 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:26 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:26 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:26 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 01:00:00 (before)
2025-03-26 02:00:00 (after)
15:22:28 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:28 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:28 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:28 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:28 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:28 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:28 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 56x35x7) for time after (2025-03-26 02:00:00)
15:22:28 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 01:00:00) in space (linearNDFast)
15:22:28 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:28 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 02:00:00) in space (linearNDFast)
15:22:28 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:28 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 01:00:00, weight 0.65) and
after (2025-03-26 02:00:00, weight 0.35) in time
15:22:28 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:28 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.17029140741616 degrees.
15:22:28 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.17029140741616 degrees.
15:22:28 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:28 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:28 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:28 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:28 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:28 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:28 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:28 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:28 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:28 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:28 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:28 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:28 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:28 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:28 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:28 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:28 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:28 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:28 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:28 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:28 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:28 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:28 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.12066 (min) 0.119389 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.143339 (min) 0.329032 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0818793 (min) -0.0280681 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: x_wind: 5.02618 (min) 6.03213 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: y_wind: -6.87988 (min) -4.31367 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 38.1654 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.55927 (min) 6.72658 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 25.6688 (min) 34.126 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000175827 (min) 0.000182815 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:28 DEBUG opendrift:694: No elements hit coastline.
15:22:28 DEBUG opendrift:738: Lifting 6 elements to seafloor.
15:22:28 DEBUG opendrift:1695: No elements to deactivate
15:22:28 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:28 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:28 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:28 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4
15:22:28 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 3 0]
15:22:28 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 0 3]
15:22:28 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 414. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 16. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:28 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:28 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:28 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:28 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:28 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.05554143426019152
15:22:28 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:28 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:28 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:28 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
15:22:28 DEBUG opendrift:738: Lifting 3 elements to seafloor.
15:22:28 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:28 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:28 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:28 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:28 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:28 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:28 INFO opendrift.models.chemicaldrift:1861: partitioning: [58, 0, 1, 441, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:28 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:28 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:28 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:28 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:28 DEBUG opendrift:2055: ======================================================================
15:22:28 INFO opendrift:2056: 2025-03-26 01:50:53.643886 - step 70 of 96 - 500 active elements (0 deactivated)
15:22:28 DEBUG opendrift:2062: 0 elements scheduled.
15:22:28 DEBUG opendrift:2064: ======================================================================
15:22:28 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.75166625983634
15:22:28 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 10.826924108850553
15:22:28 DEBUG opendrift:2085: -30.25039724756209 <- z -> -0.7571055673161711
15:22:28 DEBUG opendrift:2086: ---------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:28 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:28 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:28 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:28 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 01:00:00 (before)
2025-03-26 02:00:00 (after)
15:22:28 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 01:00:00) in space (linearNDFast)
15:22:28 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:28 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 02:00:00) in space (linearNDFast)
15:22:28 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:28 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 01:00:00, weight 0.15) and
after (2025-03-26 02:00:00, weight 0.85) in time
15:22:28 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:28 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.17308688763597 degrees.
15:22:28 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.17308688763597 degrees.
15:22:28 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:28 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:28 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:28 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:28 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:28 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:28 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:28 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:28 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:28 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:28 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:28 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:28 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:28 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:28 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:28 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:28 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:28 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:28 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:28 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:28 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:28 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:28 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:28 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.110343 (min) 0.11284 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.110523 (min) 0.404936 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.11305 (min) -0.0530052 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: x_wind: 4.19231 (min) 5.5006 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: y_wind: -7.98383 (min) -5.32808 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 39.8926 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.58373 (min) 6.69103 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.0526 (min) 34.2348 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000226903 (min) 0.000226369 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:28 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:28 DEBUG opendrift:694: No elements hit coastline.
15:22:28 DEBUG opendrift:738: Lifting 11 elements to seafloor.
15:22:29 DEBUG opendrift:1695: No elements to deactivate
15:22:29 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:29 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:29 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:29 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3
15:22:29 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0]
15:22:29 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3]
15:22:29 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 417. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 16. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:29 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:29 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:29 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:29 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:29 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.05876529992380737
15:22:29 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:29 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:29 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:29 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
15:22:29 DEBUG opendrift:738: Lifting 3 elements to seafloor.
15:22:29 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 7 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:29 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:29 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:29 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:29 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:29 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:29 INFO opendrift.models.chemicaldrift:1861: partitioning: [55, 0, 1, 444, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:29 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:29 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:29 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:29 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:29 DEBUG opendrift:2055: ======================================================================
15:22:29 INFO opendrift:2056: 2025-03-26 02:20:53.643886 - step 71 of 96 - 500 active elements (0 deactivated)
15:22:29 DEBUG opendrift:2062: 0 elements scheduled.
15:22:29 DEBUG opendrift:2064: ======================================================================
15:22:29 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.758210779478354
15:22:29 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 10.826063248515327
15:22:29 DEBUG opendrift:2085: -31.744774196659847 <- z -> -0.09227028293441908
15:22:29 DEBUG opendrift:2086: ---------------------------------
15:22:29 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:29 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:29 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:29 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:29 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:29 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:29 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:29 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 02:00:00 (before)
2025-03-26 03:00:00 (after)
15:22:31 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:31 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:31 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:31 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:31 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:31 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:31 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 57x35x7) for time after (2025-03-26 03:00:00)
15:22:31 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 02:00:00) in space (linearNDFast)
15:22:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:31 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 03:00:00) in space (linearNDFast)
15:22:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:31 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 02:00:00, weight 0.65) and
after (2025-03-26 03:00:00, weight 0.35) in time
15:22:31 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.1739477487092 degrees.
15:22:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.1739477487092 degrees.
15:22:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:31 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:31 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:31 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:31 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:31 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:31 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.129258 (min) 0.328147 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.097139 (min) 0.316833 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.156165 (min) -0.0933438 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: x_wind: 2.50618 (min) 4.75375 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: y_wind: -8.81841 (min) -5.79077 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 42.3614 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.58148 (min) 6.77657 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 25.92 (min) 34.2142 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000265729 (min) 0.000245749 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:31 DEBUG opendrift:694: No elements hit coastline.
15:22:31 DEBUG opendrift:738: Lifting 17 elements to seafloor.
15:22:31 DEBUG opendrift:1695: No elements to deactivate
15:22:31 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:31 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:31 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:31 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6
15:22:31 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0]
15:22:31 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3]
15:22:31 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 423. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 16. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:31 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:31 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:31 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:31 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:31 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.06073678868640196
15:22:31 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:31 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:31 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:31 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:534: 6 elements reached seafloor, interacting with bottom
15:22:31 DEBUG opendrift:738: Lifting 6 elements to seafloor.
15:22:31 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:31 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:31 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:31 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:31 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:31 INFO opendrift.models.chemicaldrift:1861: partitioning: [49, 0, 1, 450, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:31 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:31 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:31 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:31 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:31 DEBUG opendrift:2055: ======================================================================
15:22:31 INFO opendrift:2056: 2025-03-26 02:50:53.643886 - step 72 of 96 - 500 active elements (0 deactivated)
15:22:31 DEBUG opendrift:2062: 0 elements scheduled.
15:22:31 DEBUG opendrift:2064: ======================================================================
15:22:31 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.756640444066534
15:22:31 DEBUG opendrift:2080: 10.536750151872896 <- longitude -> 10.835984790322241
15:22:31 DEBUG opendrift:2085: -32.47721481323242 <- z -> -0.5995290702011246
15:22:31 DEBUG opendrift:2086: ---------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:31 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 02:00:00 (before)
2025-03-26 03:00:00 (after)
15:22:31 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 02:00:00) in space (linearNDFast)
15:22:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:31 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 03:00:00) in space (linearNDFast)
15:22:31 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:31 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 02:00:00, weight 0.15) and
after (2025-03-26 03:00:00, weight 0.85) in time
15:22:31 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.1640262031377 degrees.
15:22:31 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.1640262031377 degrees.
15:22:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:31 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:31 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:31 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:31 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:31 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:31 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:31 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:31 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:31 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.099183 (min) 0.31917 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.096677 (min) 0.413015 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.202254 (min) -0.140591 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.714388 (min) 3.91305 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: y_wind: -9.53909 (min) -5.99768 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 41.845 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.57822 (min) 6.73159 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.0547 (min) 34.2071 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000294557 (min) 0.000166229 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:31 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:31 DEBUG opendrift:694: No elements hit coastline.
15:22:31 DEBUG opendrift:738: Lifting 23 elements to seafloor.
15:22:31 DEBUG opendrift:1695: No elements to deactivate
15:22:31 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:31 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:31 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:31 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:22:31 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0]
15:22:31 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3]
15:22:31 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 425. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 16. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:31 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:31 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:31 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:31 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:31 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.0663170936254083
15:22:31 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:31 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:31 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:31 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
15:22:31 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:22:31 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:31 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:31 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:31 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:31 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:31 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:31 INFO opendrift.models.chemicaldrift:1861: partitioning: [47, 0, 1, 452, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:31 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:31 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:31 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:31 DEBUG opendrift:733: No elements hit seafloor.
15:22:31 DEBUG opendrift:2055: ======================================================================
15:22:31 INFO opendrift:2056: 2025-03-26 03:20:53.643886 - step 73 of 96 - 500 active elements (0 deactivated)
15:22:31 DEBUG opendrift:2062: 0 elements scheduled.
15:22:31 DEBUG opendrift:2064: ======================================================================
15:22:31 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.75507759727636
15:22:31 DEBUG opendrift:2080: 10.536750151872893 <- longitude -> 10.8456344955082
15:22:31 DEBUG opendrift:2085: -32.431522369384766 <- z -> -0.7411798426706082
15:22:31 DEBUG opendrift:2086: ---------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:31 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:31 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:31 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:31 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:31 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 03:00:00 (before)
2025-03-26 04:00:00 (after)
15:22:34 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:34 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:34 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:34 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:34 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:34 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:34 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 58x35x7) for time after (2025-03-26 04:00:00)
15:22:34 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 03:00:00) in space (linearNDFast)
15:22:34 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:34 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 04:00:00) in space (linearNDFast)
15:22:34 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:34 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 03:00:00, weight 0.65) and
after (2025-03-26 04:00:00, weight 0.35) in time
15:22:34 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:34 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.15437651636921 degrees.
15:22:34 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.15437651636921 degrees.
15:22:34 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:34 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:34 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:34 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:34 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:34 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:34 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:34 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:34 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:34 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:34 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:34 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:34 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:34 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:34 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:34 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:34 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:34 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:34 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:34 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:34 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:34 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:34 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0858213 (min) 0.311532 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.00110799 (min) 0.436465 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.256674 (min) -0.193238 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.746478 (min) 3.44926 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: y_wind: -8.76671 (min) -5.67214 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 41.3372 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.64077 (min) 6.72344 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.5808 (min) 34.1923 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00043708 (min) 0.000179348 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:34 DEBUG opendrift:694: No elements hit coastline.
15:22:34 DEBUG opendrift:738: Lifting 27 elements to seafloor.
15:22:34 DEBUG opendrift:1695: No elements to deactivate
15:22:34 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:34 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:34 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:34 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3
15:22:34 DEBUG opendrift.models.chemicaldrift:1452: old species: [3 3 0]
15:22:34 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0 3]
15:22:34 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 426. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 18. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:34 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:34 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:34 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:34 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:34 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.055943719320139564
15:22:34 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:34 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:34 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:34 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:22:34 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:34 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:34 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:34 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:34 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:34 INFO opendrift.models.chemicaldrift:1861: partitioning: [48, 0, 1, 451, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:34 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:34 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:34 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:34 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:34 DEBUG opendrift:2055: ======================================================================
15:22:34 INFO opendrift:2056: 2025-03-26 03:50:53.643886 - step 74 of 96 - 500 active elements (0 deactivated)
15:22:34 DEBUG opendrift:2062: 0 elements scheduled.
15:22:34 DEBUG opendrift:2064: ======================================================================
15:22:34 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.759428944579575
15:22:34 DEBUG opendrift:2080: 10.536750151872889 <- longitude -> 10.852111861602127
15:22:34 DEBUG opendrift:2085: -32.38557052612305 <- z -> -1.102573955852855
15:22:34 DEBUG opendrift:2086: ---------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:34 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:34 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:34 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:34 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 03:00:00 (before)
2025-03-26 04:00:00 (after)
15:22:34 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 03:00:00) in space (linearNDFast)
15:22:34 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:34 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 04:00:00) in space (linearNDFast)
15:22:34 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:34 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 03:00:00, weight 0.15) and
after (2025-03-26 04:00:00, weight 0.85) in time
15:22:34 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:34 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.14789912874895 degrees.
15:22:34 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.14789912874895 degrees.
15:22:34 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:34 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:34 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:34 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:34 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:34 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:34 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:34 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:34 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:34 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:34 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:34 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:34 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:34 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:34 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:34 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:34 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:34 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:34 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:34 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:34 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:34 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:34 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0906274 (min) 0.294446 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0124122 (min) 0.570884 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.307935 (min) -0.24752 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.50353 (min) 3.14974 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: y_wind: -7.46645 (min) -5.1599 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 42.8761 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.47221 (min) 6.73119 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.6563 (min) 34.1743 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000616702 (min) 0.000183195 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:34 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:34 DEBUG opendrift:694: No elements hit coastline.
15:22:34 DEBUG opendrift:738: Lifting 30 elements to seafloor.
15:22:34 DEBUG opendrift:1695: No elements to deactivate
15:22:34 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:34 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:34 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:34 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 8
15:22:34 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 3]
15:22:34 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 0]
15:22:34 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 433. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 19. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:34 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:34 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:34 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:34 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:34 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.041922104217675386
15:22:34 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:34 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:34 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:34 DEBUG opendrift.models.oceandrift:534: 7 elements reached seafloor, interacting with bottom
15:22:34 DEBUG opendrift:738: Lifting 7 elements to seafloor.
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 6 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:34 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:34 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:34 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:34 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:34 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:34 INFO opendrift.models.chemicaldrift:1861: partitioning: [42, 0, 1, 457, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:34 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:34 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:34 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:34 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:22:34 DEBUG opendrift:2055: ======================================================================
15:22:34 INFO opendrift:2056: 2025-03-26 04:20:53.643886 - step 75 of 96 - 500 active elements (0 deactivated)
15:22:34 DEBUG opendrift:2062: 0 elements scheduled.
15:22:34 DEBUG opendrift:2064: ======================================================================
15:22:34 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.768655396420186
15:22:34 DEBUG opendrift:2080: 10.536750151872893 <- longitude -> 10.856669274870793
15:22:34 DEBUG opendrift:2085: -34.57888412475586 <- z -> -0.5130577988886025
15:22:34 DEBUG opendrift:2086: ---------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:34 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:34 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:34 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:34 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:34 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 04:00:00 (before)
2025-03-26 05:00:00 (after)
15:22:37 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:37 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:37 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:37 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:37 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:37 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:37 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 60x35x7) for time after (2025-03-26 05:00:00)
15:22:37 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 04:00:00) in space (linearNDFast)
15:22:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:37 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 05:00:00) in space (linearNDFast)
15:22:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:37 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 04:00:00, weight 0.65) and
after (2025-03-26 05:00:00, weight 0.35) in time
15:22:37 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.14334171760576 degrees.
15:22:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.14334171760576 degrees.
15:22:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:37 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:37 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:37 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:37 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.155923 (min) 0.420417 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0189383 (min) 0.487964 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.350707 (min) -0.299083 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.22673 (min) 3.09365 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: y_wind: -6.98944 (min) -4.864 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 46.2914 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.57302 (min) 6.72543 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 25.7473 (min) 34.1495 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000527163 (min) 0.000173452 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:37 DEBUG opendrift:694: No elements hit coastline.
15:22:37 DEBUG opendrift:738: Lifting 37 elements to seafloor.
15:22:37 DEBUG opendrift:1695: No elements to deactivate
15:22:37 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:37 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:37 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:37 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3
15:22:37 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0]
15:22:37 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3]
15:22:37 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 436. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 19. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:37 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:37 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:37 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:37 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:37 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.0363930262194384
15:22:37 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:37 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:37 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:534: 3 elements reached seafloor, interacting with bottom
15:22:37 DEBUG opendrift:738: Lifting 3 elements to seafloor.
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:37 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:37 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:37 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:37 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:37 INFO opendrift.models.chemicaldrift:1861: partitioning: [39, 0, 1, 460, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:37 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:37 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:37 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:37 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:37 DEBUG opendrift:2055: ======================================================================
15:22:37 INFO opendrift:2056: 2025-03-26 04:50:53.643886 - step 76 of 96 - 500 active elements (0 deactivated)
15:22:37 DEBUG opendrift:2062: 0 elements scheduled.
15:22:37 DEBUG opendrift:2064: ======================================================================
15:22:37 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.76925292740634
15:22:37 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 10.869385034169033
15:22:37 DEBUG opendrift:2085: -34.958343505859375 <- z -> -2.1774203208019367
15:22:37 DEBUG opendrift:2086: ---------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:37 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 04:00:00 (before)
2025-03-26 05:00:00 (after)
15:22:37 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 04:00:00) in space (linearNDFast)
15:22:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:37 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 05:00:00) in space (linearNDFast)
15:22:37 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:37 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 04:00:00, weight 0.15) and
after (2025-03-26 05:00:00, weight 0.85) in time
15:22:37 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.13062595773747 degrees.
15:22:37 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.13062595773747 degrees.
15:22:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:37 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:37 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:37 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:37 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:37 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:37 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:37 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:37 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0910821 (min) 0.331182 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0195519 (min) 0.601445 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.390899 (min) -0.348834 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.404561 (min) 3.14367 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: y_wind: -6.86803 (min) -4.66237 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 46.2758 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.45528 (min) 6.70975 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.4947 (min) 34.1217 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000626885 (min) 0.000161606 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:37 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:37 DEBUG opendrift:694: No elements hit coastline.
15:22:37 DEBUG opendrift:738: Lifting 42 elements to seafloor.
15:22:37 DEBUG opendrift:1695: No elements to deactivate
15:22:37 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:37 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:37 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:37 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:22:37 DEBUG opendrift.models.chemicaldrift:1452: old species: [3]
15:22:37 DEBUG opendrift.models.chemicaldrift:1453: new species: [0]
15:22:37 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 436. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 20. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:37 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:37 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:37 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:37 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:37 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.03486612093011767
15:22:37 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:37 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:37 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:37 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 5 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:37 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:37 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:37 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:37 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:37 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:37 INFO opendrift.models.chemicaldrift:1861: partitioning: [40, 0, 1, 459, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:37 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:37 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:37 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:37 DEBUG opendrift:733: No elements hit seafloor.
15:22:37 DEBUG opendrift:2055: ======================================================================
15:22:37 INFO opendrift:2056: 2025-03-26 05:20:53.643886 - step 77 of 96 - 500 active elements (0 deactivated)
15:22:37 DEBUG opendrift:2062: 0 elements scheduled.
15:22:37 DEBUG opendrift:2064: ======================================================================
15:22:37 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.77897311336095
15:22:37 DEBUG opendrift:2080: 10.536750151872903 <- longitude -> 10.877496016378345
15:22:37 DEBUG opendrift:2085: -34.917816162109375 <- z -> -0.8127106347981643
15:22:37 DEBUG opendrift:2086: ---------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:37 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:37 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:37 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:37 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:37 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 05:00:00 (before)
2025-03-26 06:00:00 (after)
15:22:40 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:40 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:40 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:40 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:40 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:40 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:40 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 62x35x7) for time after (2025-03-26 06:00:00)
15:22:40 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 05:00:00) in space (linearNDFast)
15:22:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:40 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 06:00:00) in space (linearNDFast)
15:22:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:40 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 05:00:00, weight 0.65) and
after (2025-03-26 06:00:00, weight 0.35) in time
15:22:40 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.12251497109473 degrees.
15:22:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.12251497109473 degrees.
15:22:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:40 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:40 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:40 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:40 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:40 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:40 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0950219 (min) 0.369656 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: 0.0136998 (min) 0.554192 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.424863 (min) -0.386768 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.292144 (min) 2.97707 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: y_wind: -6.63712 (min) -4.41969 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 49.8736 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.54899 (min) 6.83641 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.0094 (min) 34.348 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000509188 (min) 0.000369477 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:40 DEBUG opendrift:694: No elements hit coastline.
15:22:40 DEBUG opendrift:738: Lifting 43 elements to seafloor.
15:22:40 DEBUG opendrift:1695: No elements to deactivate
15:22:40 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:40 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:40 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:40 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:22:40 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0]
15:22:40 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3]
15:22:40 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 438. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 20. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:40 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:40 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:40 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:40 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:40 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.0329939298199062
15:22:40 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:40 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:40 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:534: 2 elements reached seafloor, interacting with bottom
15:22:40 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:22:40 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:40 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:40 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:40 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:40 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:40 INFO opendrift.models.chemicaldrift:1861: partitioning: [38, 0, 1, 461, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:40 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:40 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:40 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:40 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:40 DEBUG opendrift:2055: ======================================================================
15:22:40 INFO opendrift:2056: 2025-03-26 05:50:53.643886 - step 78 of 96 - 500 active elements (0 deactivated)
15:22:40 DEBUG opendrift:2062: 0 elements scheduled.
15:22:40 DEBUG opendrift:2064: ======================================================================
15:22:40 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.779398317612745
15:22:40 DEBUG opendrift:2080: 10.536750151872903 <- longitude -> 10.8880216475765
15:22:40 DEBUG opendrift:2085: -34.88392639160156 <- z -> -0.9313404509093756
15:22:40 DEBUG opendrift:2086: ---------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:40 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 05:00:00 (before)
2025-03-26 06:00:00 (after)
15:22:40 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 05:00:00) in space (linearNDFast)
15:22:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:40 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 06:00:00) in space (linearNDFast)
15:22:40 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:40 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 05:00:00, weight 0.15) and
after (2025-03-26 06:00:00, weight 0.85) in time
15:22:40 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.11198933455259 degrees.
15:22:40 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.11198933455259 degrees.
15:22:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:40 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:40 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:40 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:40 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:40 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:40 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:40 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:40 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:40 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:40 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0997363 (min) 0.397502 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.00588848 (min) 0.488823 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.456586 (min) -0.419141 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.428995 (min) 2.71607 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: y_wind: -6.2599 (min) -4.09668 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 49.6771 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.57025 (min) 6.76362 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 25.5945 (min) 34.2529 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000555217 (min) 0.000516312 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:40 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:40 DEBUG opendrift:694: No elements hit coastline.
15:22:40 DEBUG opendrift:738: Lifting 141 elements to seafloor.
15:22:40 DEBUG opendrift:1695: No elements to deactivate
15:22:40 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:40 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:40 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:40 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:22:40 DEBUG opendrift.models.chemicaldrift:1452: old species: [3 3]
15:22:40 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0]
15:22:40 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 438. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 22. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:40 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:40 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:40 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:40 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:40 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.029432354697556114
15:22:40 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:40 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:40 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:40 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:40 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:40 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:40 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:40 INFO opendrift.models.chemicaldrift:1861: partitioning: [40, 0, 1, 459, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:40 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:40 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:40 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:40 DEBUG opendrift:733: No elements hit seafloor.
15:22:40 DEBUG opendrift:2055: ======================================================================
15:22:40 INFO opendrift:2056: 2025-03-26 06:20:53.643886 - step 79 of 96 - 500 active elements (0 deactivated)
15:22:40 DEBUG opendrift:2062: 0 elements scheduled.
15:22:40 DEBUG opendrift:2064: ======================================================================
15:22:40 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.78543689330262
15:22:40 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.900049703777636
15:22:40 DEBUG opendrift:2085: -34.85292434692383 <- z -> -1.5241431720410983
15:22:40 DEBUG opendrift:2086: ---------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:40 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:40 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:40 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:40 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:40 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 06:00:00 (before)
2025-03-26 07:00:00 (after)
15:22:42 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:42 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:42 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:42 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:42 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:42 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:42 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 63x35x7) for time after (2025-03-26 07:00:00)
15:22:42 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 06:00:00) in space (linearNDFast)
15:22:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:42 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 07:00:00) in space (linearNDFast)
15:22:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:42 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 06:00:00, weight 0.65) and
after (2025-03-26 07:00:00, weight 0.35) in time
15:22:42 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.099961284960024 degrees.
15:22:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.099961284960024 degrees.
15:22:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:42 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:42 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:42 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:42 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:42 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:42 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0966119 (min) 0.390884 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0157333 (min) 0.482138 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.487743 (min) -0.441966 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.634552 (min) 2.57589 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: y_wind: -5.82301 (min) -3.87453 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 51.6527 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.57796 (min) 6.70282 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 26.077 (min) 34.0454 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000652482 (min) 0.000860977 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:42 DEBUG opendrift:694: No elements hit coastline.
15:22:42 DEBUG opendrift:738: Lifting 148 elements to seafloor.
15:22:42 DEBUG opendrift:1695: No elements to deactivate
15:22:42 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:42 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:42 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:42 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:22:42 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 3]
15:22:42 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0]
15:22:42 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 439. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 23. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:42 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:42 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:42 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:42 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:42 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.02613992754601877
15:22:42 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:42 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:42 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:22:42 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:42 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:42 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:42 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:42 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:42 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:42 INFO opendrift.models.chemicaldrift:1861: partitioning: [40, 0, 1, 459, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:42 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:42 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:42 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:42 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:42 DEBUG opendrift:2055: ======================================================================
15:22:42 INFO opendrift:2056: 2025-03-26 06:50:53.643886 - step 80 of 96 - 500 active elements (0 deactivated)
15:22:42 DEBUG opendrift:2062: 0 elements scheduled.
15:22:42 DEBUG opendrift:2064: ======================================================================
15:22:42 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.785339432064056
15:22:42 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.911618827252134
15:22:42 DEBUG opendrift:2085: -34.830650329589844 <- z -> -0.5652362419200618
15:22:42 DEBUG opendrift:2086: ---------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:42 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 06:00:00 (before)
2025-03-26 07:00:00 (after)
15:22:42 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 06:00:00) in space (linearNDFast)
15:22:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:42 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 07:00:00) in space (linearNDFast)
15:22:42 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:42 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 06:00:00, weight 0.15) and
after (2025-03-26 07:00:00, weight 0.85) in time
15:22:42 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.08839216057884 degrees.
15:22:42 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.08839216057884 degrees.
15:22:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:42 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:42 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:42 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:42 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:42 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:42 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:42 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:42 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:42 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0900714 (min) 0.426078 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0418198 (min) 0.461866 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.512915 (min) -0.460769 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.866517 (min) 2.48593 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: y_wind: -5.39307 (min) -3.75009 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 51.2431 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.47687 (min) 6.88328 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.9544 (min) 34.4364 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00083981 (min) 0.00094577 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:42 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:42 DEBUG opendrift:694: No elements hit coastline.
15:22:42 DEBUG opendrift:738: Lifting 151 elements to seafloor.
15:22:42 DEBUG opendrift:1695: No elements to deactivate
15:22:42 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:42 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:42 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:42 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:22:42 DEBUG opendrift.models.chemicaldrift:1452: old species: [3]
15:22:42 DEBUG opendrift.models.chemicaldrift:1453: new species: [0]
15:22:42 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 439. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 24. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:42 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:42 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:42 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:42 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:42 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.022934434384109588
15:22:42 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:42 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:42 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:42 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:42 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:42 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:42 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:42 INFO opendrift.models.chemicaldrift:1861: partitioning: [41, 0, 1, 458, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:42 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:42 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:42 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:42 DEBUG opendrift:733: No elements hit seafloor.
15:22:42 DEBUG opendrift:2055: ======================================================================
15:22:42 INFO opendrift:2056: 2025-03-26 07:20:53.643886 - step 81 of 96 - 500 active elements (0 deactivated)
15:22:42 DEBUG opendrift:2062: 0 elements scheduled.
15:22:42 DEBUG opendrift:2064: ======================================================================
15:22:42 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.786789562346776
15:22:42 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.920286628355244
15:22:42 DEBUG opendrift:2085: -34.81217575073242 <- z -> -0.04367356655871335
15:22:42 DEBUG opendrift:2086: ---------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:42 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:42 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:42 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:42 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:42 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 07:00:00 (before)
2025-03-26 08:00:00 (after)
15:22:45 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:45 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:45 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:45 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:45 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:45 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:45 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 64x36x7) for time after (2025-03-26 08:00:00)
15:22:45 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 07:00:00) in space (linearNDFast)
15:22:45 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:45 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 08:00:00) in space (linearNDFast)
15:22:45 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:45 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 07:00:00, weight 0.65) and
after (2025-03-26 08:00:00, weight 0.35) in time
15:22:45 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:45 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.079724350954876 degrees.
15:22:45 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.079724350954876 degrees.
15:22:45 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:45 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:45 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:45 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:45 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:45 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:45 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:45 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:45 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:45 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:45 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:45 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:45 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:45 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:45 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:45 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:45 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:45 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:45 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:45 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:45 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:45 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:45 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0717706 (min) 0.447622 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0518866 (min) 0.419374 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.513328 (min) -0.462368 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.09873 (min) 2.5735 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.95786 (min) -3.65517 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 51.5313 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.48508 (min) 6.88549 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.9861 (min) 34.4558 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000866003 (min) 0.000749748 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:45 DEBUG opendrift:694: No elements hit coastline.
15:22:45 DEBUG opendrift:738: Lifting 151 elements to seafloor.
15:22:45 DEBUG opendrift:1695: No elements to deactivate
15:22:45 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:45 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:45 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:45 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:22:45 DEBUG opendrift.models.chemicaldrift:1452: old species: [3]
15:22:45 DEBUG opendrift.models.chemicaldrift:1453: new species: [0]
15:22:45 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 439. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 25. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:45 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:45 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:45 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:45 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:45 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.019630298469714796
15:22:45 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:45 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:45 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 4 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:45 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:45 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:45 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:45 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:45 INFO opendrift.models.chemicaldrift:1861: partitioning: [42, 0, 1, 457, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:45 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:45 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:45 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:45 DEBUG opendrift:733: No elements hit seafloor.
15:22:45 DEBUG opendrift:2055: ======================================================================
15:22:45 INFO opendrift:2056: 2025-03-26 07:50:53.643886 - step 82 of 96 - 500 active elements (0 deactivated)
15:22:45 DEBUG opendrift:2062: 0 elements scheduled.
15:22:45 DEBUG opendrift:2064: ======================================================================
15:22:45 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.78835947729168
15:22:45 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.92812120232467
15:22:45 DEBUG opendrift:2085: -34.81089401245117 <- z -> 0.0
15:22:45 DEBUG opendrift:2086: ---------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:45 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:45 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:45 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:45 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 07:00:00 (before)
2025-03-26 08:00:00 (after)
15:22:45 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 07:00:00) in space (linearNDFast)
15:22:45 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:45 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 08:00:00) in space (linearNDFast)
15:22:45 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:45 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 07:00:00, weight 0.15) and
after (2025-03-26 08:00:00, weight 0.85) in time
15:22:45 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:45 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.07188978694361 degrees.
15:22:45 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.07188978694361 degrees.
15:22:45 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:45 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:45 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:45 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:45 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:45 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:45 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:45 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:45 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:45 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:45 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:45 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:45 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:45 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:45 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:45 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:45 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:45 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:45 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:45 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:45 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:45 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:45 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.056513 (min) 0.488901 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0548193 (min) 0.458771 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.505659 (min) -0.454568 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.29906 (min) 2.75976 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.53365 (min) -3.57313 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 51.8471 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.46787 (min) 6.86518 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.5447 (min) 34.4155 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000844459 (min) 0.00065643 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:45 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:45 DEBUG opendrift:694: No elements hit coastline.
15:22:45 DEBUG opendrift:733: No elements hit seafloor.
15:22:45 DEBUG opendrift:1695: No elements to deactivate
15:22:45 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:45 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:45 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:45 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:22:45 DEBUG opendrift.models.chemicaldrift:1452: old species: [3]
15:22:45 DEBUG opendrift.models.chemicaldrift:1453: new species: [0]
15:22:45 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 439. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 26. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:45 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:45 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:45 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:45 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:45 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.018319118265767664
15:22:45 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:45 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:45 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:45 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:45 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:45 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:45 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:45 INFO opendrift.models.chemicaldrift:1861: partitioning: [43, 0, 1, 456, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:45 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:45 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:45 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:45 DEBUG opendrift:733: No elements hit seafloor.
15:22:45 DEBUG opendrift:2055: ======================================================================
15:22:45 INFO opendrift:2056: 2025-03-26 08:20:53.643886 - step 83 of 96 - 500 active elements (0 deactivated)
15:22:45 DEBUG opendrift:2062: 0 elements scheduled.
15:22:45 DEBUG opendrift:2064: ======================================================================
15:22:45 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.78990118300439
15:22:45 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.936014793571788
15:22:45 DEBUG opendrift:2085: -34.81089401245117 <- z -> 0.0
15:22:45 DEBUG opendrift:2086: ---------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:45 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:45 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:45 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:45 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:45 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 08:00:00 (before)
2025-03-26 09:00:00 (after)
15:22:47 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:47 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:47 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:47 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:47 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:47 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:47 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 65x37x7) for time after (2025-03-26 09:00:00)
15:22:47 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 08:00:00) in space (linearNDFast)
15:22:47 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:47 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 09:00:00) in space (linearNDFast)
15:22:47 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:47 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 08:00:00, weight 0.65) and
after (2025-03-26 09:00:00, weight 0.35) in time
15:22:47 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:47 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.06399617998099 degrees.
15:22:47 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.06399617998099 degrees.
15:22:47 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:47 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:47 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:47 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:47 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:47 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:47 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:47 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:47 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:47 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:47 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:47 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:47 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:47 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:47 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:47 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:47 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:47 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:47 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:47 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:47 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:47 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:47 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.0811304 (min) 0.515472 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.0913256 (min) 0.627302 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.482109 (min) -0.426717 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.50389 (min) 2.74181 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.42922 (min) -3.68473 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 52.1636 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.48433 (min) 6.80787 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.4163 (min) 34.2869 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000811807 (min) 0.00090476 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:47 DEBUG opendrift:694: No elements hit coastline.
15:22:47 DEBUG opendrift:733: No elements hit seafloor.
15:22:47 DEBUG opendrift:1695: No elements to deactivate
15:22:47 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:47 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:47 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:47 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:22:47 DEBUG opendrift.models.chemicaldrift:1452: old species: [3]
15:22:47 DEBUG opendrift.models.chemicaldrift:1453: new species: [0]
15:22:47 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 439. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 27. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:47 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:47 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:47 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:47 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:47 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.017747671326635347
15:22:47 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:47 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:47 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:47 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:47 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:47 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:47 INFO opendrift.models.chemicaldrift:1861: partitioning: [44, 0, 1, 455, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:47 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:47 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:47 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:47 DEBUG opendrift:733: No elements hit seafloor.
15:22:47 DEBUG opendrift:2055: ======================================================================
15:22:47 INFO opendrift:2056: 2025-03-26 08:50:53.643886 - step 84 of 96 - 500 active elements (0 deactivated)
15:22:47 DEBUG opendrift:2062: 0 elements scheduled.
15:22:47 DEBUG opendrift:2064: ======================================================================
15:22:47 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.79099848946173
15:22:47 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.945256969394153
15:22:47 DEBUG opendrift:2085: -34.81089401245117 <- z -> -0.3109088064670886
15:22:47 DEBUG opendrift:2086: ---------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:47 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:47 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:47 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:47 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 08:00:00 (before)
2025-03-26 09:00:00 (after)
15:22:47 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 08:00:00) in space (linearNDFast)
15:22:47 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:47 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 09:00:00) in space (linearNDFast)
15:22:47 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:47 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 08:00:00, weight 0.15) and
after (2025-03-26 09:00:00, weight 0.85) in time
15:22:47 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:47 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.05475400580694 degrees.
15:22:47 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -59.05475400580694 degrees.
15:22:47 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:47 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:47 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:47 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:47 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:47 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:47 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:47 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:47 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:47 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:47 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:47 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:47 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:47 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:47 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:47 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:47 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:47 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:47 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:47 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:47 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:47 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:47 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.109369 (min) 0.52358 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.144449 (min) 0.452168 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.455992 (min) -0.391327 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.72227 (min) 2.64197 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.39104 (min) -3.68101 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 52.2207 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.60625 (min) 6.5621 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 25.5068 (min) 34.0856 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000761232 (min) 0.000901113 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:47 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:47 DEBUG opendrift:694: No elements hit coastline.
15:22:47 DEBUG opendrift:733: No elements hit seafloor.
15:22:47 DEBUG opendrift:1695: No elements to deactivate
15:22:47 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:47 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:47 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:47 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 0
15:22:47 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:47 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.017480523360091794
15:22:47 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:47 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:47 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:47 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:47 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:47 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:47 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:47 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:47 INFO opendrift.models.chemicaldrift:1861: partitioning: [44, 0, 1, 455, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:47 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:47 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:47 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:47 DEBUG opendrift:733: No elements hit seafloor.
15:22:47 DEBUG opendrift:2055: ======================================================================
15:22:47 INFO opendrift:2056: 2025-03-26 09:20:53.643886 - step 85 of 96 - 500 active elements (0 deactivated)
15:22:47 DEBUG opendrift:2062: 0 elements scheduled.
15:22:47 DEBUG opendrift:2064: ======================================================================
15:22:47 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.792783558159826
15:22:47 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.954795893332204
15:22:47 DEBUG opendrift:2085: -34.81089401245117 <- z -> 0.0
15:22:47 DEBUG opendrift:2086: ---------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:47 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:47 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:47 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:47 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:47 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 09:00:00 (before)
2025-03-26 10:00:00 (after)
15:22:50 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:50 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:50 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:50 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:50 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:50 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:50 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 66x38x7) for time after (2025-03-26 10:00:00)
15:22:50 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 09:00:00) in space (linearNDFast)
15:22:50 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:50 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 10:00:00) in space (linearNDFast)
15:22:50 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:50 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 09:00:00, weight 0.65) and
after (2025-03-26 10:00:00, weight 0.35) in time
15:22:50 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:50 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.04521508526447 degrees.
15:22:50 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.04521508526447 degrees.
15:22:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:50 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:50 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:50 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:50 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:50 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:50 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:50 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:50 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:50 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:50 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:50 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:50 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.126298 (min) 0.541601 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.191901 (min) 0.506377 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.405282 (min) -0.342337 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.79349 (min) 2.51217 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.24791 (min) -3.46198 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 52.4877 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.5383 (min) 6.55923 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.4528 (min) 34.2297 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000694896 (min) 0.000812906 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:50 DEBUG opendrift:694: No elements hit coastline.
15:22:50 DEBUG opendrift:733: No elements hit seafloor.
15:22:50 DEBUG opendrift:1695: No elements to deactivate
15:22:50 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:50 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:50 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:50 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:22:50 DEBUG opendrift.models.chemicaldrift:1452: old species: [3]
15:22:50 DEBUG opendrift.models.chemicaldrift:1453: new species: [0]
15:22:50 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 439. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 28. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:50 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:50 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:50 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:50 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:50 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.016677575485494363
15:22:50 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:50 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:50 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:50 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:50 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:50 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:50 INFO opendrift.models.chemicaldrift:1861: partitioning: [45, 0, 1, 454, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:50 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:50 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:50 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:50 DEBUG opendrift:733: No elements hit seafloor.
15:22:50 DEBUG opendrift:2055: ======================================================================
15:22:50 INFO opendrift:2056: 2025-03-26 09:50:53.643886 - step 86 of 96 - 500 active elements (0 deactivated)
15:22:50 DEBUG opendrift:2062: 0 elements scheduled.
15:22:50 DEBUG opendrift:2064: ======================================================================
15:22:50 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.794476917001234
15:22:50 DEBUG opendrift:2080: 10.536750151872901 <- longitude -> 10.96459856310036
15:22:50 DEBUG opendrift:2085: -34.81089401245117 <- z -> 0.0
15:22:50 DEBUG opendrift:2086: ---------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:50 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 09:00:00 (before)
2025-03-26 10:00:00 (after)
15:22:50 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 09:00:00) in space (linearNDFast)
15:22:50 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:50 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 10:00:00) in space (linearNDFast)
15:22:50 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:50 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 09:00:00, weight 0.15) and
after (2025-03-26 10:00:00, weight 0.85) in time
15:22:50 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:50 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.03541240301772 degrees.
15:22:50 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.03541240301772 degrees.
15:22:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:50 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:50 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:50 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:50 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:50 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:50 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:50 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:50 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:50 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:50 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:50 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:50 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:50 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.138297 (min) 0.580157 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.181372 (min) 0.453679 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.35313 (min) -0.286964 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.51479 (min) 2.40941 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: y_wind: -4.1272 (min) -3.09909 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 56.3124 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.56375 (min) 6.58531 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.4741 (min) 34.2156 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000676679 (min) 0.00100146 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:50 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:50 DEBUG opendrift:694: No elements hit coastline.
15:22:50 DEBUG opendrift:733: No elements hit seafloor.
15:22:50 DEBUG opendrift:1695: No elements to deactivate
15:22:50 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:50 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:50 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:50 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:22:50 DEBUG opendrift.models.chemicaldrift:1452: old species: [0]
15:22:50 DEBUG opendrift.models.chemicaldrift:1453: new species: [3]
15:22:50 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 440. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 28. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:50 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:50 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:50 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:50 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:50 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.015808318554967917
15:22:50 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:50 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:50 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:50 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:22:50 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:50 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:50 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:50 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:50 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:50 INFO opendrift.models.chemicaldrift:1861: partitioning: [44, 0, 1, 455, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:50 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:50 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:50 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:50 DEBUG opendrift:733: No elements hit seafloor.
15:22:50 DEBUG opendrift:2055: ======================================================================
15:22:50 INFO opendrift:2056: 2025-03-26 10:20:53.643886 - step 87 of 96 - 500 active elements (0 deactivated)
15:22:50 DEBUG opendrift:2062: 0 elements scheduled.
15:22:50 DEBUG opendrift:2064: ======================================================================
15:22:50 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.795696999943495
15:22:50 DEBUG opendrift:2080: 10.536750151872896 <- longitude -> 10.975670163326765
15:22:50 DEBUG opendrift:2085: -34.81089401245117 <- z -> 0.0
15:22:50 DEBUG opendrift:2086: ---------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:50 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:50 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:50 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:50 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:50 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 10:00:00 (before)
2025-03-26 11:00:00 (after)
15:22:53 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:53 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:53 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:53 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:53 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:53 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:53 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 68x39x7) for time after (2025-03-26 11:00:00)
15:22:53 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 10:00:00) in space (linearNDFast)
15:22:53 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:53 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 11:00:00) in space (linearNDFast)
15:22:53 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:53 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 10:00:00, weight 0.65) and
after (2025-03-26 11:00:00, weight 0.35) in time
15:22:53 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:53 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.02434080575501 degrees.
15:22:53 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.02434080575501 degrees.
15:22:53 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:53 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:53 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:53 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:53 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:53 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:53 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:53 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:53 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:53 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:53 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:53 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:53 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:53 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:53 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:53 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:53 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:53 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:53 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:53 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:53 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:53 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:53 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.14574 (min) 0.577084 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.24825 (min) 0.451251 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.291684 (min) -0.227827 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: x_wind: 1.1754 (min) 2.16585 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.72576 (min) -2.53719 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 56.7438 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.57162 (min) 6.65365 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.2985 (min) 34.2093 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000414615 (min) 0.000941714 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:53 DEBUG opendrift:694: No elements hit coastline.
15:22:53 DEBUG opendrift:733: No elements hit seafloor.
15:22:53 DEBUG opendrift:1695: No elements to deactivate
15:22:53 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:53 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:53 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:53 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:22:53 DEBUG opendrift.models.chemicaldrift:1452: old species: [3 3]
15:22:53 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0]
15:22:53 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 440. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 30. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:53 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:53 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:53 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:53 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:53 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.012642570402875843
15:22:53 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:53 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:53 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:53 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:53 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:53 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:53 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:53 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:53 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:53 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:53 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:53 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:53 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:53 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:53 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:53 INFO opendrift.models.chemicaldrift:1861: partitioning: [46, 0, 1, 453, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:53 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:53 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:53 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:53 DEBUG opendrift:733: No elements hit seafloor.
15:22:53 DEBUG opendrift:2055: ======================================================================
15:22:53 INFO opendrift:2056: 2025-03-26 10:50:53.643886 - step 88 of 96 - 500 active elements (0 deactivated)
15:22:53 DEBUG opendrift:2062: 0 elements scheduled.
15:22:53 DEBUG opendrift:2064: ======================================================================
15:22:53 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.79634528760782
15:22:53 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.986492278660222
15:22:53 DEBUG opendrift:2085: -34.81089401245117 <- z -> 0.0
15:22:53 DEBUG opendrift:2086: ---------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:53 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:53 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:53 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:53 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 10:00:00 (before)
2025-03-26 11:00:00 (after)
15:22:53 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 10:00:00) in space (linearNDFast)
15:22:53 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:53 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 11:00:00) in space (linearNDFast)
15:22:53 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:53 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 10:00:00, weight 0.15) and
after (2025-03-26 11:00:00, weight 0.85) in time
15:22:53 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:53 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.013518691983805 degrees.
15:22:53 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.013518691983805 degrees.
15:22:53 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:53 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:53 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:53 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:53 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:53 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:53 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:53 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:53 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:53 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:53 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:53 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:53 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:53 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:53 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:53 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:53 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:53 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:53 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:53 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:53 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:53 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:53 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.227435 (min) 0.603407 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.314666 (min) 0.455317 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.229699 (min) -0.167148 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.809556 (min) 1.87439 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: y_wind: -3.20061 (min) -1.77118 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 57.4447 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.6039 (min) 6.59743 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.3082 (min) 34.2491 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00134869 (min) 0.000982848 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:53 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:53 DEBUG opendrift:694: No elements hit coastline.
15:22:53 DEBUG opendrift:733: No elements hit seafloor.
15:22:53 DEBUG opendrift:1695: No elements to deactivate
15:22:53 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:53 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:53 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:53 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 0
15:22:53 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:53 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.009060037601191364
15:22:53 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:53 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:53 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:53 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:53 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:53 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:53 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:53 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:53 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:53 INFO opendrift.models.chemicaldrift:1861: partitioning: [46, 0, 1, 453, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:53 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:53 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:53 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:53 DEBUG opendrift:733: No elements hit seafloor.
15:22:53 DEBUG opendrift:2055: ======================================================================
15:22:53 INFO opendrift:2056: 2025-03-26 11:20:53.643886 - step 89 of 96 - 500 active elements (0 deactivated)
15:22:53 DEBUG opendrift:2062: 0 elements scheduled.
15:22:53 DEBUG opendrift:2064: ======================================================================
15:22:53 DEBUG opendrift:2075: 57.55473165237979 <- latitude -> 57.79650483426812
15:22:53 DEBUG opendrift:2080: 10.5367501518729 <- longitude -> 10.996778582233443
15:22:53 DEBUG opendrift:2085: -34.81089401245117 <- z -> -0.22892933585505698
15:22:53 DEBUG opendrift:2086: ---------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:53 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:53 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:53 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:53 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:53 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 11:00:00 (before)
2025-03-26 12:00:00 (after)
15:22:55 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:55 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:55 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:55 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:55 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:55 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:55 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 68x40x7) for time after (2025-03-26 12:00:00)
15:22:55 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 11:00:00) in space (linearNDFast)
15:22:55 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:55 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 12:00:00) in space (linearNDFast)
15:22:55 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:55 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 11:00:00, weight 0.65) and
after (2025-03-26 12:00:00, weight 0.35) in time
15:22:55 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:55 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.003232377548166 degrees.
15:22:55 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -59.003232377548166 degrees.
15:22:55 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:55 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:55 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:55 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:55 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:55 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:55 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:55 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:55 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:55 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:55 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:55 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:55 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:55 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:55 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:55 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:55 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:55 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:55 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:55 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:55 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:55 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:55 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:55 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:55 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:55 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:55 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:55 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:55 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:55 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.278538 (min) 0.578695 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.346271 (min) 0.425812 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.180124 (min) -0.118653 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.52112 (min) 1.79961 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.82676 (min) -1.35501 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 57.0367 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.62787 (min) 6.5968 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.4054 (min) 34.2896 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00102678 (min) 0.000964779 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:55 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:55 DEBUG opendrift:694: No elements hit coastline.
15:22:55 DEBUG opendrift:733: No elements hit seafloor.
15:22:56 DEBUG opendrift:1695: No elements to deactivate
15:22:56 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:56 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:56 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:56 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 0
15:22:56 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:56 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.007312548875438031
15:22:56 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:56 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:56 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:56 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:56 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:56 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:56 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:56 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:56 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:56 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:56 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:56 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:56 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:56 INFO opendrift.models.chemicaldrift:1861: partitioning: [46, 0, 1, 453, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:56 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:56 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:56 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:56 DEBUG opendrift:733: No elements hit seafloor.
15:22:56 DEBUG opendrift:2055: ======================================================================
15:22:56 INFO opendrift:2056: 2025-03-26 11:50:53.643886 - step 90 of 96 - 500 active elements (0 deactivated)
15:22:56 DEBUG opendrift:2062: 0 elements scheduled.
15:22:56 DEBUG opendrift:2064: ======================================================================
15:22:56 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.79927300657852
15:22:56 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 11.003687229045644
15:22:56 DEBUG opendrift:2085: -34.81089401245117 <- z -> -0.33304463383081095
15:22:56 DEBUG opendrift:2086: ---------------------------------
15:22:56 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:56 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:56 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:56 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:56 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:56 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:56 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:56 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 11:00:00 (before)
2025-03-26 12:00:00 (after)
15:22:56 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 11:00:00) in space (linearNDFast)
15:22:56 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:56 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 12:00:00) in space (linearNDFast)
15:22:56 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:56 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 11:00:00, weight 0.15) and
after (2025-03-26 12:00:00, weight 0.85) in time
15:22:56 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:56 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -58.99632373071741 degrees.
15:22:56 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.46326093448528 and -58.99632373071741 degrees.
15:22:56 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:56 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:56 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:56 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:56 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:56 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:56 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:56 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:56 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:56 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:56 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:56 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:56 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:56 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:56 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:56 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:56 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:56 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:56 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:56 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:56 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:56 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:56 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:56 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:56 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:56 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:56 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:56 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:56 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:56 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.316309 (min) 0.536269 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.374981 (min) 0.448449 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.13419 (min) -0.0772421 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.266419 (min) 1.81336 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.54237 (min) -1.03488 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 58.3425 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.69242 (min) 6.63651 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.5077 (min) 34.2877 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.0015527 (min) 0.000933832 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:56 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:56 DEBUG opendrift:694: No elements hit coastline.
15:22:56 DEBUG opendrift:733: No elements hit seafloor.
15:22:56 DEBUG opendrift:1695: No elements to deactivate
15:22:56 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:56 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:56 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:56 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:22:56 DEBUG opendrift.models.chemicaldrift:1452: old species: [3]
15:22:56 DEBUG opendrift.models.chemicaldrift:1453: new species: [0]
15:22:56 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 440. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 31. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:56 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:56 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:56 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:56 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:56 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.0063127823988960285
15:22:56 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:56 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:56 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:56 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:56 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:56 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:56 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:56 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:56 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:56 INFO opendrift.models.chemicaldrift:1861: partitioning: [47, 0, 1, 452, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:56 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:56 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:56 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:56 DEBUG opendrift:733: No elements hit seafloor.
15:22:56 DEBUG opendrift:2055: ======================================================================
15:22:56 INFO opendrift:2056: 2025-03-26 12:20:53.643886 - step 91 of 96 - 500 active elements (0 deactivated)
15:22:56 DEBUG opendrift:2062: 0 elements scheduled.
15:22:56 DEBUG opendrift:2064: ======================================================================
15:22:56 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.80064277924725
15:22:56 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 11.011236954032547
15:22:56 DEBUG opendrift:2085: -34.81089401245117 <- z -> -0.2181848798244277
15:22:56 DEBUG opendrift:2086: ---------------------------------
15:22:56 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:56 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:56 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:56 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:56 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:56 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:56 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:56 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 12:00:00 (before)
2025-03-26 13:00:00 (after)
15:22:58 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:22:58 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:22:58 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:22:58 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:22:58 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:22:58 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:22:58 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 69x41x7) for time after (2025-03-26 13:00:00)
15:22:58 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 12:00:00) in space (linearNDFast)
15:22:58 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:58 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 13:00:00) in space (linearNDFast)
15:22:58 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:58 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 12:00:00, weight 0.65) and
after (2025-03-26 13:00:00, weight 0.35) in time
15:22:58 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:58 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -58.98877401385552 degrees.
15:22:58 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -58.98877401385552 degrees.
15:22:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:58 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:58 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:58 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:58 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:58 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:58 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:58 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:58 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:58 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:58 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:58 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:58 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.30473 (min) 0.583617 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.367393 (min) 0.434385 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.114538 (min) -0.0490816 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.315767 (min) 1.92051 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.35753 (min) -0.80409 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 57.1908 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.68738 (min) 6.66336 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.1814 (min) 34.2526 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00168494 (min) 0.000911575 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:58 DEBUG opendrift:694: No elements hit coastline.
15:22:58 DEBUG opendrift:733: No elements hit seafloor.
15:22:58 DEBUG opendrift:1695: No elements to deactivate
15:22:58 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:58 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:58 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:58 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:22:58 DEBUG opendrift.models.chemicaldrift:1452: old species: [3]
15:22:58 DEBUG opendrift.models.chemicaldrift:1453: new species: [0]
15:22:58 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 440. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 32. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:58 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:58 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:58 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:58 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:58 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.006046666208606081
15:22:58 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:58 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:58 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:58 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:58 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:58 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:58 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:58 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:58 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:58 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:58 DEBUG opendrift.models.oceandrift:516: 3 elements penetrated seafloor, lifting up
15:22:58 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:58 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:58 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:58 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:58 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:58 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:58 INFO opendrift.models.chemicaldrift:1861: partitioning: [48, 0, 1, 451, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:58 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:58 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:58 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:58 DEBUG opendrift:733: No elements hit seafloor.
15:22:58 DEBUG opendrift:2055: ======================================================================
15:22:58 INFO opendrift:2056: 2025-03-26 12:50:53.643886 - step 92 of 96 - 500 active elements (0 deactivated)
15:22:58 DEBUG opendrift:2062: 0 elements scheduled.
15:22:58 DEBUG opendrift:2064: ======================================================================
15:22:58 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.80393964264797
15:22:58 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 11.017284573322392
15:22:58 DEBUG opendrift:2085: -34.81089401245117 <- z -> -0.3518978788203612
15:22:58 DEBUG opendrift:2086: ---------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:58 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:58 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 12:00:00 (before)
2025-03-26 13:00:00 (after)
15:22:58 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 12:00:00) in space (linearNDFast)
15:22:58 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:58 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 13:00:00) in space (linearNDFast)
15:22:58 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:22:58 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 12:00:00, weight 0.15) and
after (2025-03-26 13:00:00, weight 0.85) in time
15:22:58 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:22:58 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -58.98272638490575 degrees.
15:22:58 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -58.98272638490575 degrees.
15:22:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:22:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:22:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:58 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:22:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:58 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:22:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:22:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:58 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:22:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:22:58 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:22:58 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:22:58 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:22:58 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:22:58 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:22:58 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:22:58 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:22:58 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:22:58 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:22:58 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.271644 (min) 0.576744 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.332105 (min) 0.324371 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.100509 (min) -0.0275829 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.268913 (min) 2.20106 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.23337 (min) -0.621759 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 58.3106 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.73258 (min) 6.69873 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.5109 (min) 34.2362 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00165633 (min) 0.000808312 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:22:58 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:22:58 DEBUG opendrift:694: No elements hit coastline.
15:22:58 DEBUG opendrift:733: No elements hit seafloor.
15:22:58 DEBUG opendrift:1695: No elements to deactivate
15:22:58 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:22:58 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:22:58 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:22:58 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2
15:22:58 DEBUG opendrift.models.chemicaldrift:1452: old species: [3 0]
15:22:58 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3]
15:22:58 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 441. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 33. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:22:58 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:58 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:58 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:22:58 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:22:58 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.00605316180940884
15:22:58 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:22:58 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:22:58 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:22:58 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:22:58 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:22:58 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:58 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:58 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:22:58 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:22:58 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:22:58 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:22:58 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:22:58 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:22:58 INFO opendrift.models.chemicaldrift:1861: partitioning: [48, 0, 1, 451, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:22:58 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:22:58 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:22:58 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:22:58 DEBUG opendrift:733: No elements hit seafloor.
15:22:58 DEBUG opendrift:2055: ======================================================================
15:22:58 INFO opendrift:2056: 2025-03-26 13:20:53.643886 - step 93 of 96 - 500 active elements (0 deactivated)
15:22:58 DEBUG opendrift:2062: 0 elements scheduled.
15:22:58 DEBUG opendrift:2064: ======================================================================
15:22:58 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.806430057810935
15:22:58 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 11.023437930423626
15:22:58 DEBUG opendrift:2085: -34.81089401245117 <- z -> -0.5253376956128327
15:22:58 DEBUG opendrift:2086: ---------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:22:58 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:22:58 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:22:58 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:22:58 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:22:58 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 13:00:00 (before)
2025-03-26 14:00:00 (after)
15:23:00 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:23:00 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:23:00 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:23:00 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:23:00 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:23:00 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:23:00 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 71x41x7) for time after (2025-03-26 14:00:00)
15:23:00 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 13:00:00) in space (linearNDFast)
15:23:00 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:23:00 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 14:00:00) in space (linearNDFast)
15:23:00 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:23:00 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 13:00:00, weight 0.65) and
after (2025-03-26 14:00:00, weight 0.35) in time
15:23:00 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:23:00 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -58.97657304724543 degrees.
15:23:00 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -58.97657304724543 degrees.
15:23:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:23:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:23:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:23:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:23:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:23:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:23:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:23:00 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:23:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:23:00 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:23:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:23:00 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:23:00 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:23:00 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:23:00 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:23:00 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:23:00 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:23:00 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:23:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:23:00 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:23:00 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:23:00 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:23:00 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:23:00 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:23:00 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:23:00 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:23:00 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:23:00 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:23:00 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:23:00 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.222575 (min) 0.430975 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.276865 (min) 0.341888 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.0940388 (min) -0.0251557 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.0966981 (min) 2.21195 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.18692 (min) -0.289253 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 60.0627 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.75429 (min) 6.72241 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.7108 (min) 34.2909 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000434346 (min) 0.000687164 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:23:00 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:23:00 DEBUG opendrift:694: No elements hit coastline.
15:23:00 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:23:00 DEBUG opendrift:1695: No elements to deactivate
15:23:00 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:23:00 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:23:00 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:23:00 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:23:00 DEBUG opendrift.models.chemicaldrift:1452: old species: [0]
15:23:00 DEBUG opendrift.models.chemicaldrift:1453: new species: [3]
15:23:00 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 442. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 33. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:23:00 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:23:00 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:23:00 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:23:00 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:23:00 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.0056513335024216535
15:23:00 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:23:00 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:23:00 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:23:00 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:23:00 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:23:01 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:01 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:01 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:01 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:23:01 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:23:01 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:23:01 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:23:01 INFO opendrift.models.chemicaldrift:1861: partitioning: [47, 0, 1, 452, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:23:01 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:23:01 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:23:01 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:23:01 DEBUG opendrift:733: No elements hit seafloor.
15:23:01 DEBUG opendrift:2055: ======================================================================
15:23:01 INFO opendrift:2056: 2025-03-26 13:50:53.643886 - step 94 of 96 - 500 active elements (0 deactivated)
15:23:01 DEBUG opendrift:2062: 0 elements scheduled.
15:23:01 DEBUG opendrift:2064: ======================================================================
15:23:01 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.80898690773629
15:23:01 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 11.02907637394271
15:23:01 DEBUG opendrift:2085: -34.81089401245117 <- z -> -0.3578843944852665
15:23:01 DEBUG opendrift:2086: ---------------------------------
15:23:01 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:23:01 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:23:01 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:23:01 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:23:01 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:23:01 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:23:01 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:23:01 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 13:00:00 (before)
2025-03-26 14:00:00 (after)
15:23:01 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 13:00:00) in space (linearNDFast)
15:23:01 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:23:01 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 14:00:00) in space (linearNDFast)
15:23:01 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:23:01 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 13:00:00, weight 0.15) and
after (2025-03-26 14:00:00, weight 0.85) in time
15:23:01 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:23:01 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -58.97093458787833 degrees.
15:23:01 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -58.97093458787833 degrees.
15:23:01 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:23:01 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:23:01 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:23:01 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:23:01 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:23:01 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:23:01 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:23:01 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:23:01 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:23:01 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:23:01 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:23:01 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:23:01 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:23:01 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:23:01 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:23:01 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:23:01 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:23:01 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:23:01 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:23:01 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:23:01 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:23:01 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:23:01 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:23:01 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:23:01 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:23:01 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:23:01 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:23:01 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:23:01 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:23:01 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.209853 (min) 0.376659 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.212535 (min) 0.308605 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.107707 (min) -0.0302164 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: x_wind: -0.0467386 (min) 2.45191 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.24918 (min) 0.0918066 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 60.2688 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.78477 (min) 6.66347 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.587 (min) 34.2935 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.00020081 (min) 0.000763119 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:23:01 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:23:01 DEBUG opendrift:694: No elements hit coastline.
15:23:01 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:23:01 DEBUG opendrift:1695: No elements to deactivate
15:23:01 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:23:01 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:23:01 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:23:01 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:23:01 DEBUG opendrift.models.chemicaldrift:1452: old species: [3]
15:23:01 DEBUG opendrift.models.chemicaldrift:1453: new species: [0]
15:23:01 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 442. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 34. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:23:01 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:23:01 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:23:01 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:23:01 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:23:01 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.005105978851995301
15:23:01 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:23:01 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:23:01 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:23:01 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:01 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:23:01 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:01 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:01 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:01 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:01 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:23:01 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:23:01 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:23:01 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:23:01 INFO opendrift.models.chemicaldrift:1861: partitioning: [48, 0, 1, 451, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:23:01 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:23:01 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:23:01 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:23:01 DEBUG opendrift:733: No elements hit seafloor.
15:23:01 DEBUG opendrift:2055: ======================================================================
15:23:01 INFO opendrift:2056: 2025-03-26 14:20:53.643886 - step 95 of 96 - 500 active elements (0 deactivated)
15:23:01 DEBUG opendrift:2062: 0 elements scheduled.
15:23:01 DEBUG opendrift:2064: ======================================================================
15:23:01 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.81173327662444
15:23:01 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 11.034122126361092
15:23:01 DEBUG opendrift:2085: -34.81089401245117 <- z -> -0.5590559151519106
15:23:01 DEBUG opendrift:2086: ---------------------------------
15:23:01 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:23:01 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:23:01 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:23:01 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:23:01 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:23:01 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:23:01 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:23:01 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 14:00:00 (before)
2025-03-26 15:00:00 (after)
15:23:03 DEBUG opendrift.readers.basereader.variables:637: Checking sea_floor_depth_below_sea_level for invalid values
15:23:03 DEBUG opendrift.readers.basereader.variables:637: Checking x_wind for invalid values
15:23:03 DEBUG opendrift.readers.basereader.variables:637: Checking y_wind for invalid values
15:23:03 DEBUG opendrift.readers.basereader.variables:637: Checking x_sea_water_velocity for invalid values
15:23:03 DEBUG opendrift.readers.basereader.variables:637: Checking y_sea_water_velocity for invalid values
15:23:03 DEBUG opendrift.readers.interpolation.structured:70: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity']
15:23:03 DEBUG opendrift.readers.basereader.structured:315: Fetched env-block (size 72x42x7) for time after (2025-03-26 15:00:00)
15:23:03 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 14:00:00) in space (linearNDFast)
15:23:03 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:23:03 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 15:00:00) in space (linearNDFast)
15:23:03 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:23:03 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 14:00:00, weight 0.65) and
after (2025-03-26 15:00:00, weight 0.35) in time
15:23:03 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:23:03 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -58.96588883373342 degrees.
15:23:03 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -58.96588883373342 degrees.
15:23:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:23:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:23:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:23:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:23:03 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:23:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:23:03 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:23:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:23:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:23:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:23:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:23:03 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:23:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:23:03 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:23:03 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:23:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:23:03 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:23:03 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:23:03 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:23:03 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:23:03 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:23:03 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:23:03 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.221569 (min) 0.354105 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.158314 (min) 0.396903 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.141771 (min) -0.0572255 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.282517 (min) 2.69688 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.23556 (min) 0.388677 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 61.0312 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.77615 (min) 6.721 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.4983 (min) 34.308 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000489157 (min) 0.000648497 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:23:03 DEBUG opendrift:694: No elements hit coastline.
15:23:03 DEBUG opendrift:738: Lifting 2 elements to seafloor.
15:23:03 DEBUG opendrift:1695: No elements to deactivate
15:23:03 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:23:03 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:23:03 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:23:03 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:23:03 DEBUG opendrift.models.chemicaldrift:1452: old species: [0]
15:23:03 DEBUG opendrift.models.chemicaldrift:1453: new species: [3]
15:23:03 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 443. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 34. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:23:03 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:23:03 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:23:03 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:23:03 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:23:03 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.005341472293776232
15:23:03 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:23:03 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:23:03 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:23:03 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:23:03 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:23:03 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:03 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:03 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:23:03 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:03 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:23:03 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:03 DEBUG opendrift.models.oceandrift:516: 2 elements penetrated seafloor, lifting up
15:23:03 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:03 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:03 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:23:03 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:23:03 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:23:03 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:23:03 INFO opendrift.models.chemicaldrift:1861: partitioning: [47, 0, 1, 452, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:23:03 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:23:03 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:23:03 DEBUG opendrift:874: to be seeded: 0, already seeded 500
15:23:03 DEBUG opendrift:733: No elements hit seafloor.
15:23:03 DEBUG opendrift:2055: ======================================================================
15:23:03 INFO opendrift:2056: 2025-03-26 14:50:53.643886 - step 96 of 96 - 500 active elements (0 deactivated)
15:23:03 DEBUG opendrift:2062: 0 elements scheduled.
15:23:03 DEBUG opendrift:2064: ======================================================================
15:23:03 DEBUG opendrift:2075: 57.5547316523798 <- latitude -> 57.81357241313584
15:23:03 DEBUG opendrift:2080: 10.536750151872898 <- longitude -> 11.038969399484413
15:23:03 DEBUG opendrift:2085: -34.81089401245117 <- z -> -0.4460670075655988
15:23:03 DEBUG opendrift:2086: ---------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity', 'sea_surface_height']
15:23:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
15:23:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:23:03 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
15:23:03 DEBUG opendrift.readers.basereader.structured:222: Reader time:
2025-03-26 14:00:00 (before)
2025-03-26 15:00:00 (after)
15:23:03 DEBUG opendrift.readers.basereader.structured:336: Interpolating before (2025-03-26 14:00:00) in space (linearNDFast)
15:23:03 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:23:03 DEBUG opendrift.readers.basereader.structured:342: Interpolating after (2025-03-26 15:00:00) in space (linearNDFast)
15:23:03 DEBUG opendrift.readers.interpolation.structured:97: Initialising interpolator.
15:23:03 DEBUG opendrift.readers.basereader.structured:357: Interpolating before (2025-03-26 14:00:00, weight 0.15) and
after (2025-03-26 15:00:00, weight 0.85) in time
15:23:03 DEBUG opendrift.readers.basereader.structured:370: Interpolating profiles in time
15:23:03 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -58.96104157004467 degrees.
15:23:03 DEBUG opendrift.readers.basereader.variables:100: Rotating vectors between -59.4632609332728 and -58.96104157004467 degrees.
15:23:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:23:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['ocean_mixed_layer_thickness']
15:23:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader constant_reader
15:23:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:23:03 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from constant_reader covering 500 elements
15:23:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:23:03 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:23:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:23:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:23:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:23:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:23:03 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:23:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:23:03 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:23:03 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:23:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:23:03 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:23:03 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
15:23:03 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 10 for sea_water_temperature for 0 profiles
15:23:03 DEBUG opendrift.models.basemodel.environment:798: Using fallback value 34 for sea_water_salinity for 0 profiles
15:23:03 DEBUG opendrift.models.basemodel.environment:787: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
15:23:03 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:23:03 DEBUG opendrift.models.basemodel.environment:889: x_sea_water_velocity: -0.227573 (min) 0.380239 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: y_sea_water_velocity: -0.114852 (min) 0.47453 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: sea_surface_height: -0.178443 (min) -0.0942111 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: x_wind: 0.722597 (min) 2.93254 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: y_wind: -2.27295 (min) 0.739914 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: sea_floor_depth_below_sea_level: 10.6513 (min) 62.6265 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_temperature: 5.77705 (min) 6.63075 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_salinity: 24.6881 (min) 34.3148 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: upward_sea_water_velocity: -0.000270036 (min) 0.00046856 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: spm: 1 (min) 1 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: ocean_mixed_layer_thickness: 40 (min) 40 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: doc: 0 (min) 0 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:889: pH_sediment: 6.9 (min) 6.9 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:23:03 DEBUG opendrift:694: No elements hit coastline.
15:23:03 DEBUG opendrift:738: Lifting 3 elements to seafloor.
15:23:03 DEBUG opendrift:1695: No elements to deactivate
15:23:03 DEBUG opendrift:2129: Calling ChemicalDrift.update()
15:23:03 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
15:23:03 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization
15:23:03 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1
15:23:03 DEBUG opendrift.models.chemicaldrift:1452: old species: [0]
15:23:03 DEBUG opendrift.models.chemicaldrift:1453: new species: [3]
15:23:03 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total:
[[ 0. 0. 0. 444. 0.]
[ 0. 0. 0. 0. 0.]
[ 7. 0. 0. 43. 0.]
[ 34. 0. 0. 0. 0.]
[ 0. 0. 0. 0. 0.]]
15:23:03 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:23:03 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:23:03 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
15:23:03 DEBUG opendrift.models.oceandrift:428: Using functional expression for diffusivity
15:23:03 DEBUG opendrift.models.oceandrift:433: Diffusivities are in range 0.0 to 0.006613922935793145
15:23:03 DEBUG opendrift.models.oceandrift:452: TSprofiles deactivated for vertical mixing
15:23:03 DEBUG opendrift.models.oceandrift:466: Vertical mixing module:windspeed_Large1994
15:23:03 DEBUG opendrift.models.oceandrift:469: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
15:23:03 DEBUG opendrift.models.oceandrift:534: 1 elements reached seafloor, interacting with bottom
15:23:03 DEBUG opendrift:738: Lifting 1 elements to seafloor.
15:23:03 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:03 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:03 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:03 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:03 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:03 DEBUG opendrift.models.oceandrift:516: 1 elements penetrated seafloor, lifting up
15:23:03 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
15:23:03 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
15:23:03 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
15:23:03 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
15:23:03 INFO opendrift.models.chemicaldrift:1861: partitioning: [46, 0, 1, 453, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
15:23:03 DEBUG opendrift:1646: Horizontal diffusivity is 0, no random walk.
15:23:03 DEBUG opendrift:2144: 500 active elements (0 deactivated)
15:23:03 DEBUG opendrift:2173: Cleaning up
15:23:03 DEBUG opendrift.models.basemodel.environment:591: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:592: Variable group ['land_binary_mask']
15:23:03 DEBUG opendrift.models.basemodel.environment:593: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:597: Calling reader global_landmask
15:23:03 DEBUG opendrift.models.basemodel.environment:598: ----------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:614: Data needed for 500 elements
15:23:03 DEBUG opendrift.readers.basereader.variables:759: Fetching variables from global_landmask covering 500 elements
15:23:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
15:23:03 DEBUG opendrift.readers.basereader.variables:637: Checking land_binary_mask for invalid values
15:23:03 DEBUG opendrift.readers.basereader.variables:795: Reader projection is latlon - rotation of vectors is not needed.
15:23:03 DEBUG opendrift.models.basemodel.environment:748: Obtained data for all elements.
15:23:03 DEBUG opendrift.models.basemodel.environment:761: ---------------------------------------
15:23:03 DEBUG opendrift.models.basemodel.environment:762: Finished processing all variable groups
15:23:03 DEBUG opendrift.models.basemodel.environment:887: ------------ SUMMARY -------------
15:23:03 DEBUG opendrift.models.basemodel.environment:889: land_binary_mask: 0 (min) 0 (max)
15:23:03 DEBUG opendrift.models.basemodel.environment:891: ---------------------------------
15:23:03 DEBUG opendrift:694: No elements hit coastline.
15:23:03 DEBUG opendrift:2256: Updating minval and maxval
15:23:03 DEBUG opendrift:2336: Writing to file
15:23:03 DEBUG opendrift:1695: No elements to deactivate
15:23:03 DEBUG opendrift:100: Changed mode from Mode.Run to Mode.Result
Print and plot results
print('Final speciation:')
for isp,sp in enumerate(o.name_species):
print ('{:32}: {:>6}'.format(sp,sum(o.elements.specie==isp)))
print('Number of transformations:')
for isp in range(o.nspecies):
print('{}'.format(['{:>9}'.format(np.int32(item)) for item in o.ntransformations[isp,:]]) )
m_pre = o.result.mass.isel(time=-1).sum()
m_deg = o.result.mass_degraded.isel(time=-1).sum()
m_vol = o.result.mass_volatilized.isel(time=-1).sum()
m_tot = m_pre + m_deg + m_vol
print('Mass budget for target chemical:')
print('mass preserved : {:.3f}'.format(m_pre * 1e-6),' g {:.3f}'.format(m_pre/m_tot*100),'%')
print('mass degraded : {:.3f}'.format(m_deg * 1e-6),' g {:.3f}'.format(m_deg/m_tot*100),'%')
print('mass volatilized : {:.3f}'.format(m_vol * 1e-6),' g {:.3f}'.format(m_vol/m_tot*100),'%')
legend=['dissolved', '', 'SPM', 'sediment', '']
o.animation_profile(color='specie',
markersize='mass',
markersize_scaling=30,
alpha=.5,
vmin=0,vmax=o.nspecies-1,
legend = legend,
legend_loc = 3,
fps = 10
)
Final speciation:
LMM : 46
Humic colloid : 0
Particle reversible : 1
Sediment reversible : 453
Sediment slowly reversible : 0
Number of transformations:
[' 0', ' 0', ' 0', ' 444', ' 0']
[' 0', ' 0', ' 0', ' 0', ' 0']
[' 7', ' 0', ' 0', ' 43', ' 0']
[' 34', ' 0', ' 0', ' 0', ' 0']
[' 0', ' 0', ' 0', ' 0', ' 0']
Mass budget for target chemical:
mass preserved : 0.413 g 41.301 %
mass degraded : 0.585 g 58.522 %
mass volatilized : 0.002 g 0.177 %
15:23:03 DEBUG opendrift:3043: Saving animation..
15:23:03 INFO opendrift:4600: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_0.gif...
15:23:15 DEBUG opendrift:4638: MPLBACKEND = agg
15:23:15 DEBUG opendrift:4639: DISPLAY = None
15:23:15 DEBUG opendrift:4640: Time to save animation: 0:00:11.797405
15:23:15 INFO opendrift:3246: Time to make animation: 0:00:11.898397

o.animation(color='specie',
markersize='mass',
markersize_scaling=100,
alpha=.5,
vmin=0,vmax=o.nspecies-1,
colorbar=False,
fast = True,
legend = legend,
legend_loc = 3,
fps=10
)
15:23:15 DEBUG opendrift:2398: Setting up map: corners=None, fast=True, lscale=None
15:23:15 WARNING opendrift:2429: Plotting fast. This will make your plots less accurate.
15:23:16 DEBUG opendrift:3043: Saving animation..
15:23:16 INFO opendrift:4600: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_1.gif...
15:24:24 DEBUG opendrift:4638: MPLBACKEND = agg
15:24:24 DEBUG opendrift:4639: DISPLAY = None
15:24:24 DEBUG opendrift:4640: Time to save animation: 0:01:08.131134
15:24:24 INFO opendrift:3036: Time to make animation: 0:01:09.445576

o.plot_mass(legend = legend,
time_unit = 'hours',
title = 'Chemical mass budget')

15:24:24 WARNING opendrift:4413: Method get_property is obsolete and will soon be removed. Use o.result.<property> instead.
15:24:24 WARNING opendrift:4413: Method get_property is obsolete and will soon be removed. Use o.result.<property> instead.
dissolved : 0.026454765624999998g (6.4054179892706635%)
SPM : 0.002g (0.48425437443433517%)
sediment : 0.38455131249999996g (93.110327636295%)
/root/project/opendrift/models/chemicaldrift.py:3007: UserWarning: set_ticklabels() should only be used with a fixed number of ticks, i.e. after set_ticks() or using a FixedLocator.
ax.axes.get_xaxis().set_ticklabels(np.round(ax.axes.get_xticks() * time_conversion_factor))
Total running time of the script: (3 minutes 40.076 seconds)