ChemicalDrift - Transport and fate of organic compounds

from opendrift.readers import reader_netCDF_CF_generic
from opendrift.models.chemicaldrift import ChemicalDrift
from opendrift.readers.reader_constant import Reader as ConstantReader
from datetime import timedelta, datetime
import matplotlib.pyplot as plt
import numpy as np


o = ChemicalDrift(loglevel=0, seed=0)

# Norkyst
reader_norkyst = reader_netCDF_CF_generic.Reader('https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be')
mixed_layer = ConstantReader({'ocean_mixed_layer_thickness': 40})
o.add_reader([reader_norkyst,mixed_layer])

o.set_config('drift:vertical_mixing', True)
o.set_config('vertical_mixing:diffusivitymodel', 'windspeed_Large1994')
o.set_config('chemical:particle_diameter',30.e-6)  # m
o.set_config('chemical:particle_diameter_uncertainty',5.e-6) # m
o.set_config('chemical:sediment:resuspension_critvel',0.15) # m/s
o.set_config('chemical:transformations:volatilization', True)
o.set_config('chemical:transformations:degradation', True)
o.set_config('chemical:transformations:degradation_mode', 'OverallRateConstants')
o.set_config('seed:LMM_fraction',.9)
o.set_config('seed:particle_fraction',.1)
o.set_config('general:coastline_action', 'previous')

o.init_chemical_compound("Phenanthrene")

# Modify half-life times with unrealistic values for this demo
o.set_config('chemical:transformations:t12_W_tot', 6.) # hours
o.set_config('chemical:transformations:t12_S_tot', 12.) # hours

o.list_configspec()

07:41:34 DEBUG   opendrift.config:168: Adding 18 config items from __init__
07:41:34 DEBUG   opendrift.config:178:   Overwriting config item readers:max_number_of_fails
07:41:34 DEBUG   opendrift.config:168: Adding 13 config items from __init__
07:41:34 INFO    opendrift.models.basemodel:515: OpenDriftSimulation initialised (version 1.11.13 / v1.11.13)
07:41:34 DEBUG   opendrift.config:168: Adding 15 config items from oceandrift
07:41:34 DEBUG   opendrift.config:178:   Overwriting config item seed:z
07:41:34 DEBUG   opendrift.config:168: Adding 71 config items from chemicaldrift
07:41:34 INFO    opendrift.readers.reader_netCDF_CF_generic:102: Opening dataset: https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
07:41:42 DEBUG   opendrift.readers.reader_netCDF_CF_generic:119: Finding coordinate variables.
07:41:42 DEBUG   opendrift.readers.reader_netCDF_CF_generic:134: Parsing CF grid mapping dictionary: {'grid_mapping_name': 'polar_stereographic', 'straight_vertical_longitude_from_pole': 70.0, 'latitude_of_projection_origin': 90.0, 'standard_parallel': 60.0, 'false_easting': 3192800.0, 'false_northing': 1784000.0, 'semi_major_axis': 6378137.0, 'semi_minor_axis': 6356752.3142, 'proj4': '+proj=stere +lat_0=90 +lat_ts=60 +lon_0=70 +x_0=3192800 +y_0=1784000 +a=6378137 +b=6356752.3142 +units=m +no_defs +type=crs'}
07:41:43 INFO    opendrift.readers.reader_netCDF_CF_generic:314: Detected dimensions: {'x': 'X', 'y': 'Y', 'z': 'depth', 'time': 'time'}
07:41:43 DEBUG   opendrift.readers.reader_netCDF_CF_generic:350: Skipped variables without standard_name: ['angle', 'tke', 'ubar', 'vbar']
07:41:43 DEBUG   opendrift.readers.basereader.variables:608: Setting buffer size 25 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 5 m/s and time span of 1:00:00
07:41:43 DEBUG   opendrift.readers.basereader:176: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
07:41:43 DEBUG   opendrift.readers.basereader.variables:563: Adding variable mapping: ['x_wind', 'y_wind'] -> wind_speed
07:41:43 DEBUG   opendrift.readers.basereader.variables:563: Adding variable mapping: ['x_sea_water_velocity', 'y_sea_water_velocity'] -> sea_water_speed
07:41:43 DEBUG   opendrift.readers.basereader:176: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
07:41:43 DEBUG   opendrift.models.basemodel.environment:328: Added reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
07:41:43 DEBUG   opendrift.models.basemodel.environment:328: Added reader constant_reader
environment:constant:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:sea_surface_height [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_surface_height [0] float min: None, max: None [None] Fallback value for s...
environment:constant:x_wind         [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:x_wind         [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:y_wind         [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:y_wind         [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:fallback:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:constant:sea_floor_depth_below_sea_level [None] float min: -20, max: 12000 [None] Depth of seafloor...
environment:fallback:sea_floor_depth_below_sea_level [10000] float min: -20, max: 12000 [None] Depth of seafloor...
environment:constant:ocean_vertical_diffusivity [None] float min: 0, max: 1 [None] Use constant value f...
environment:fallback:ocean_vertical_diffusivity [0.0001] float min: 0, max: 1 [None] Fallback value for o...
environment:constant:sea_water_temperature [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_temperature [10] float min: None, max: None [None] Fallback value for s...
environment:constant:sea_water_salinity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_salinity [34] float min: None, max: None [None] Fallback value for s...
environment:constant:upward_sea_water_velocity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:upward_sea_water_velocity [0] float min: None, max: None [None] Fallback value for u...
environment:constant:spm            [None] float min: None, max: None [None] Use constant value f...
environment:fallback:spm            [1] float min: None, max: None [None] Fallback value for s...
environment:constant:ocean_mixed_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:ocean_mixed_layer_thickness [50] float min: None, max: None [None] Fallback value for o...
environment:constant:active_sediment_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:active_sediment_layer_thickness [0.03] float min: None, max: None [None] Fallback value for a...
environment:constant:doc            [None] float min: None, max: None [None] Use constant value f...
environment:fallback:doc            [0.0] float min: None, max: None [None] Fallback value for d...
environment:constant:sea_water_ph_reported_on_total_scale [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_ph_reported_on_total_scale [8.1] float min: None, max: None [None] Fallback value for s...
environment:constant:pH_sediment    [None] float min: None, max: None [None] Use constant value f...
environment:fallback:pH_sediment    [6.9] float min: None, max: None [None] Fallback value for p...
general:use_auto_landmask           [True] bool   A built-in GSHHG glo...
drift:current_uncertainty           [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:current_uncertainty_uniform   [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:max_speed                     [2.0] float min: 0, max: inf [seconds] Typical maximum spee...
readers:max_number_of_fails         [1] int   min: 0, max: 1000000.0 [number] Readers are discarde...
general:simulation_name             [] str   min length 0, max length 64 Name of simulation...
general:coastline_action            [previous] enum  ['none', 'stranding', 'previous'] None means that obje...
general:coastline_approximation_precision [0.001] float min: 0.0001, max: 0.005 [degrees] The precision of the...
general:time_step_minutes           [60] float min: 0.01, max: 1440 [minutes] Calculation time ste...
general:time_step_output_minutes    [None] float min: 1, max: 1440 [minutes] Output time step, i....
seed:ocean_only                     [True] bool   If True, elements se...
seed:number                         [1] int   min: 1, max: 100000000 [1] The number of elemen...
drift:max_age_seconds               [None] float min: 0, max: inf [seconds] Elements will be dea...
drift:advection_scheme              [euler] enum  ['euler', 'runge-kutta', 'runge-kutta4'] Numerical advection ...
drift:horizontal_diffusivity        [0] float min: 0, max: 100000 [m2/s] Add horizontal diffu...
drift:profiles_depth                [50] float min: 0, max: None [meters] Environment profiles...
drift:wind_uncertainty              [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:relative_wind                 [False] bool   If True, wind drift ...
drift:deactivate_north_of           [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_south_of           [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_east_of            [None] float min: -360, max: 360 [degrees] Elements are deactiv...
drift:deactivate_west_of            [None] float min: -360, max: 360 [degrees] Elements are deactiv...
seed:origin_marker                  [0] float min: None, max: None [None] An integer kept cons...
seed:z                              [0] float min: -10000, max: 0 [m] Depth below sea leve...
seed:wind_drift_factor              [0.02] float min: None, max: None [1] Elements at surface ...
seed:current_drift_factor           [1] float min: None, max: None [1] Elements are moved w...
seed:terminal_velocity              [0.0] float min: None, max: None [m/s] Terminal rise/sinkin...
seed:diameter                       [0.0] float min: None, max: None [m] Seeding value of dia...
seed:density                        [2650.0] float min: None, max: None [kg/m^3] Seeding value of den...
seed:specie                         [0] float min: None, max: None [] Seeding value of spe...
seed:mass                           [1000.0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded                  [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_water            [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_sediment         [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_volatilized               [0] float min: None, max: None [ug] Seeding value of mas...
drift:vertical_advection            [True] bool   Advect elements with...
drift:vertical_mixing               [True] bool   Activate vertical mi...
vertical_mixing:timestep            [60] float min: 0.1, max: 3600 [seconds] Time step used for i...
vertical_mixing:diffusivitymodel    [windspeed_Large1994] enum  ['environment', 'stepfunction', 'windspeed_Sundby1983', 'windspeed_Large1994', 'gls_tke', 'constant'] Algorithm/source use...
vertical_mixing:background_diffusivity [1.2e-05] float min: 0, max: 1 [m2s-1] Background diffusivi...
vertical_mixing:TSprofiles          [False] bool   Update T and S profi...
drift:wind_drift_depth              [0.1] float min: 0, max: 10 [meters] The direct wind drif...
drift:stokes_drift                  [True] bool   Advection elements w...
drift:stokes_drift_profile          [Phillips] enum  ['monochromatic', 'exponential', 'Phillips', 'windsea_swell'] Algorithm to calcula...
drift:use_tabularised_stokes_drift  [False] bool   If True, Stokes drif...
drift:tabularised_stokes_drift_fetch [25000] enum  ['5000', '25000', '50000'] The fetch length whe...
general:seafloor_action             [lift_to_seafloor] enum  ['none', 'lift_to_seafloor', 'deactivate', 'previous'] "deactivate": elemen...
drift:truncate_ocean_model_below_m  [None] float min: 0, max: 10000 [m] Ocean model data are...
seed:seafloor                       [False] bool   Elements are seeded ...
chemical:transfer_setup             [organics] enum  ['Sandnesfj_Al', 'metals', '137Cs_rev', 'custom', 'organics'] ...
chemical:dynamic_partitioning       [True] bool   Toggle dynamic parti...
chemical:slowly_fraction            [False] bool   ...
chemical:irreversible_fraction      [False] bool   ...
chemical:dissolved_diameter         [0] float min: 0, max: 0.0001 [m] ...
chemical:particle_diameter          [3e-05] float min: 0, max: 0.0001 [m] ...
chemical:particle_concentration_half_depth [20] float min: 0, max: 100 [m] ...
chemical:doc_concentration_half_depth [1000] float min: 0, max: 1000 [m] ...
chemical:particle_diameter_uncertainty [5e-06] float min: 0, max: 0.0001 [m] ...
seed:LMM_fraction                   [0.9] float min: 0, max: 1 [] ...
seed:particle_fraction              [0.1] float min: 0, max: 1 [] ...
chemical:species:LMM                [True] bool   Toggle LMM species...
chemical:species:LMMcation          [False] bool   ...
chemical:species:LMManion           [False] bool   ...
chemical:species:Colloid            [False] bool   ...
chemical:species:Humic_colloid      [False] bool   ...
chemical:species:Polymer            [False] bool   ...
chemical:species:Particle_reversible [True] bool   ...
chemical:species:Particle_slowly_reversible [False] bool   ...
chemical:species:Particle_irreversible [False] bool   ...
chemical:species:Sediment_reversible [True] bool   ...
chemical:species:Sediment_slowly_reversible [False] bool   ...
chemical:species:Sediment_irreversible [False] bool   ...
chemical:transformations:Kd         [2.0] float min: 0, max: 1000000000.0 [m3/kg] ...
chemical:transformations:S0         [0.0] float min: 0, max: 100 [PSU] parameter controllin...
chemical:transformations:Dc         [1.16e-05] float min: 0, max: 1000000.0 [] ...
chemical:transformations:slow_coeff [0] float min: 0, max: 1000000.0 [] ...
chemical:transformations:volatilization [True] bool   Chemical is evaporat...
chemical:transformations:degradation [True] bool   Chemical mass is deg...
chemical:transformations:degradation_mode [OverallRateConstants] enum  ['OverallRateConstants'] ...
chemical:transformations:dissociation [nondiss] enum  ['nondiss', 'acid', 'base', 'amphoter'] ...
chemical:transformations:LogKOW     [4.505] float min: -3, max: 10 [Log L/Kg] ...
chemical:transformations:TrefKOW    [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_KOC_Sed [-24900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:DeltaH_KOC_DOM [-25900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:Setchenow  [0.3026] float min: 0, max: 1 [L/mol] ...
chemical:transformations:pKa_acid   [-1] float min: -1, max: 14 [] ...
chemical:transformations:pKa_base   [-1] float min: -1, max: 14 [] ...
chemical:transformations:KOC_DOM    [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:KOC_sed    [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:fOC_SPM    [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:fOC_sed    [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:aggregation_rate [0] float min: 0, max: 1 [s-1] ...
chemical:transformations:t12_W_tot  [6.0] float min: 1, max: None [hours] half life in water, ...
chemical:transformations:Tref_kWt   [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kWt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:t12_S_tot  [12.0] float min: 1, max: None [hours] half life in sedimen...
chemical:transformations:Tref_kSt   [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kSt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:MolWt      [178.226] float min: 50, max: 1000 [amu] molecular weight...
chemical:transformations:Henry      [4.294e-05] float min: None, max: None [atm m3 mol-1] Henry constant...
chemical:transformations:Vpress     [0.0222] float min: None, max: None [Pa] Vapour pressure...
chemical:transformations:Tref_Vpress [25.0] float min: None, max: None [C] Vapour pressure ref ...
chemical:transformations:DeltaH_Vpress [71733.0] float min: -100000.0, max: 115000.0 [J/mol] Enthalpy of volatili...
chemical:transformations:Solub      [1.09] float min: None, max: None [g/m3] Solubility...
chemical:transformations:Tref_Solub [25.0] float min: None, max: None [C] Solubility ref temp...
chemical:transformations:DeltaH_Solub [34800.0] float min: -100000.0, max: 100000.0 [J/mol] Enthalpy of solubili...
chemical:sediment:mixing_depth      [0.03] float min: 0, max: 100 [m] ...
chemical:sediment:density           [2600] float min: 0, max: 10000 [kg/m3] ...
chemical:sediment:effective_fraction [0.9] float min: 0, max: 1 [] ...
chemical:sediment:corr_factor       [0.1] float min: 0, max: 10 [] ...
chemical:sediment:porosity          [0.6] float min: 0, max: 1 [] ...
chemical:sediment:layer_thickness   [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth  [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth [1] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_critvel [0.15] float min: 0, max: 1 [m/s] ...
chemical:sediment:burial_rate       [3e-05] float min: 0, max: 10 [m/year] ...
chemical:sediment:buried_leaking_rate [0] float min: 0, max: 10 [s-1] ...
chemical:compound                   [Phenanthrene] enum  ['Naphthalene', 'Phenanthrene', 'Fluoranthene', 'Benzo-a-anthracene', 'Benzo-a-pyrene', 'Dibenzo-ah-anthracene', 'C1-Naphthalene', 'Acenaphthene', 'Acenaphthylene', 'Fluorene', 'Dibenzothiophene', 'C2-Naphthalene', 'Anthracene', 'C3-Naphthalene', 'C1-Dibenzothiophene', 'Pyrene', 'C1-Phenanthrene', 'C2-Dibenzothiophene', 'C2-Phenanthrene', 'Benzo-b-fluoranthene', 'Chrysene', 'C3-Dibenzothiophene', 'C3-Phenanthrene', 'Benzo-k-fluoranthene', 'Benzo-ghi-perylene', 'Indeno-123cd-pyrene', 'Copper', 'Cadmium', 'Chromium', 'Lead', 'Vanadium', 'Zinc', 'Nickel', None] ...

Seeding 500 lagrangian elements each representign 2mg og target chemical

td=datetime.today()
time = td - timedelta(days=10)

latseed= 57.6;   lonseed= 10.6 # Skagen

ntraj=500
iniz=np.random.rand(ntraj) * -10. # seeding the chemicals in the upper 10m

o.seed_elements(lonseed, latseed, z=iniz, radius=2000,number=ntraj,time=time, mass=2e3)

41:43 DEBUG   opendrift.models.chemicaldrift:870: Partitioning coefficients (Tref,freshwater)
41:43 DEBUG   opendrift.models.chemicaldrift:871: KOC_sed: 12953.922406542462 L/KgOC
41:43 DEBUG   opendrift.models.chemicaldrift:872: KOC_SPM: 12953.922406542462 L/KgOC
41:43 DEBUG   opendrift.models.chemicaldrift:873: KOC_DOM: 3004.29439651874 L/KgOC
41:43 DEBUG   opendrift.models.chemicaldrift:885: Kd_sed: 647.6961203271231 L/Kg
41:43 DEBUG   opendrift.models.chemicaldrift:886: Kd_SPM: 647.6961203271231 L/Kg
41:43 DEBUG   opendrift.models.chemicaldrift:887: Kd_DOM: 1580.2588525688573 L/Kg
41:43 DEBUG   opendrift.models.chemicaldrift:1104: nspecies: 5
41:43 DEBUG   opendrift.models.chemicaldrift:1105: Transfer rates:
 [[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
00000000e+00]
 [4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
16887646e-11]
 [0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]]
41:43 DEBUG   opendrift.models.chemicaldrift:509: Initial partitioning:
41:43 DEBUG   opendrift.models.chemicaldrift:511:       449   0 LMM
41:43 DEBUG   opendrift.models.chemicaldrift:511:         0   1 Humic colloid
41:43 DEBUG   opendrift.models.chemicaldrift:511:        51   2 Particle reversible
41:43 DEBUG   opendrift.models.chemicaldrift:511:         0   3 Sediment reversible
41:43 DEBUG   opendrift.models.chemicaldrift:511:         0   4 Sediment slowly reversible
41:43 INFO    opendrift.models.basemodel.environment:218: Adding a dynamical landmask with max. priority based on assumed maximum speed of 2.0 m/s. Adding a customised landmask may be faster...
41:43 DEBUG   opendrift.readers.basereader:176: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
41:48 DEBUG   opendrift.models.basemodel.environment:328: Added reader global_landmask
41:48 INFO    opendrift.models.basemodel.environment:245: Fallback values will be used for the following variables which have no readers:
41:48 INFO    opendrift.models.basemodel.environment:248:    sea_surface_height: 0.000000
41:48 INFO    opendrift.models.basemodel.environment:248:    ocean_vertical_diffusivity: 0.000100
41:48 INFO    opendrift.models.basemodel.environment:248:    spm: 1.000000
41:48 INFO    opendrift.models.basemodel.environment:248:    active_sediment_layer_thickness: 0.030000
41:48 INFO    opendrift.models.basemodel.environment:248:    doc: 0.000000
41:48 INFO    opendrift.models.basemodel.environment:248:    sea_water_ph_reported_on_total_scale: 8.100000
41:48 INFO    opendrift.models.basemodel.environment:248:    pH_sediment: 6.900000
41:48 DEBUG   opendrift.models.basemodel:95: Changed mode from Mode.Config to Mode.Ready

Running model

o.run(steps=48*2, time_step=1800, time_step_output=1800)

41:48 DEBUG   opendrift.models.basemodel:95: Changed mode from Mode.Ready to Mode.Run
41:49 DEBUG   opendrift.models.basemodel:1778:
------------------------------------------------------
Software and hardware:
  OpenDrift version 1.11.13
  Platform: Linux, 5.15.0-1057-aws
56774139404297 GB memory
processors (x86_64)
  NumPy version 1.26.4
  SciPy version 1.14.0
  Matplotlib version 3.9.1
  NetCDF4 version 1.6.1
  Xarray version 2024.6.0
  ADIOS (adios_db) version 1.1.1
  Copernicusmarine version 1.3.1
  Python version 3.11.6 | packaged by conda-forge | (main, Oct  3 2023, 10:40:35) [GCC 12.3.0]
------------------------------------------------------

41:49 DEBUG   opendrift.models.basemodel:1792: No output file is specified, neglecting export_buffer_length
41:49 DEBUG   opendrift.models.basemodel:1910: Finalizing environment and preparing readers for simulation coverage ([4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]) and time (2024-07-14 07:41:43.064707 to 2024-07-16 07:41:43.064707)
41:49 DEBUG   opendrift.models.basemodel.environment:180:    Preparing https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]
41:49 DEBUG   opendrift.readers.basereader.structured:153: Clearing cache for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be before starting new simulation
41:49 DEBUG   opendrift.readers.basereader.variables:608: Setting buffer size 11 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 2 m/s and time span of 1:00:00
41:49 DEBUG   opendrift.readers.basereader.variables:549: Nothing more to prepare for https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
41:49 DEBUG   opendrift.models.basemodel.environment:180:    Preparing constant_reader for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]
41:49 DEBUG   opendrift.readers.basereader.variables:549: Nothing more to prepare for constant_reader
41:49 DEBUG   opendrift.models.basemodel.environment:180:    Preparing global_landmask for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]
41:49 DEBUG   opendrift.readers.basereader.variables:549: Nothing more to prepare for global_landmask
41:49 INFO    opendrift.models.basemodel:936: Using existing reader for land_binary_mask
41:49 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
41:49 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
41:49 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
41:49 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
41:49 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
41:49 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
41:49 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
41:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
41:49 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
41:49 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
41:49 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
41:49 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
41:49 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
41:49 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
41:49 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
41:49 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
41:49 INFO    opendrift.models.basemodel:947: All points are in ocean
41:49 INFO    opendrift.models.chemicaldrift:352: Number of species: 5
41:49 INFO    opendrift.models.chemicaldrift:354:   0 LMM
41:49 INFO    opendrift.models.chemicaldrift:354:   1 Humic colloid
41:49 INFO    opendrift.models.chemicaldrift:354:   2 Particle reversible
41:49 INFO    opendrift.models.chemicaldrift:354:   3 Sediment reversible
41:49 INFO    opendrift.models.chemicaldrift:354:   4 Sediment slowly reversible
41:49 INFO    opendrift.models.chemicaldrift:357: transfer setup: organics
41:49 INFO    opendrift.models.chemicaldrift:359: nspecies: 5
41:49 INFO    opendrift.models.chemicaldrift:360: Transfer rates:
 [[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
00000000e+00]
 [4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
16887646e-11]
 [0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]]
41:49 DEBUG   opendrift.models.basemodel:891: to be seeded: 500, already seeded 0
41:49 DEBUG   opendrift.models.basemodel:909: Released 500 new elements.
41:49 WARNING opendrift.models.basemodel:730: Seafloor check not being run because environment is missing. This will happen the first time the function is run but if it happens subsequently there is probably a problem.
41:49 DEBUG   opendrift.models.basemodel:2037: ======================================================================
41:49 INFO    opendrift.models.basemodel:2038: 2024-07-14 07:41:43.064707 - step 1 of 96 - 500 active elements (0 deactivated)
41:49 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
41:49 DEBUG   opendrift.models.basemodel:2046: ======================================================================
41:49 DEBUG   opendrift.models.basemodel:2057:               57.546223 <- latitude  -> 57.64813
41:49 DEBUG   opendrift.models.basemodel:2062:               10.507113 <- longitude -> 10.70608
41:49 DEBUG   opendrift.models.basemodel:2067:               -9.98847   <- z ->   -0.046954762
41:49 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
41:49 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
41:49 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
41:49 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
41:49 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
41:49 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
41:49 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
41:49 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
41:49 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 07:00:00 (before)
                2024-07-14 08:00:00 (after)
41:58 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
41:58 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
41:58 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
41:58 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
41:58 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
41:58 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
41:58 DEBUG   opendrift.readers.basereader.structured:291: Fetched env-block (size 36x35x7) for time before (2024-07-14 07:00:00)
42:00 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:00 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:00 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:00 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:00 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:00 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:00 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 36x35x7) for time after (2024-07-14 08:00:00)
42:00 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 07:00:00) in space  (linearNDFast)
42:00 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:00 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 08:00:00) in space  (linearNDFast)
42:00 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:00 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 07:00:00, weight 0.30) and
                      after (2024-07-14 08:00:00, weight 0.70) in time
42:00 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:00 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.4929004930107 and -59.29392585710053 degrees.
42:00 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.4929004930107 and -59.29392585710053 degrees.
42:00 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:00 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:00 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:00 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:00 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:00 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:00 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:00 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:00 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:00 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:00 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:00 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:00 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:00 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:00 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:00 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:00 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:00 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:00 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:00 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:00 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:00 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:00 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:00 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:00 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:00 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:00 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:00 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0714946 (min) 0.184372 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0429292 (min) 0.374692 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 5.89851 (min) 7.49697 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.89311 (min) 2.8296 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.53077 (min) 23.882 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.4861 (min) 16.6394 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 24.6548 (min) 30.1472 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -2.33684e-05 (min) 0.000101532 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:00 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:00 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:00 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:00 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:00 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:00 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
42:00 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:00 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 1
42:00 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2]
42:00 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0]
42:00 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[0. 0. 0. 0. 0.]
 [0. 0. 0. 0. 0.]
 [1. 0. 0. 0. 0.]
 [0. 0. 0. 0. 0.]
 [0. 0. 0. 0. 0.]]
42:00 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:00 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:00 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:00 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:00 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.045711753966323335
42:00 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:00 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:00 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:00 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 35 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 32 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
42:00 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:00 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:00 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:00 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:00 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:00 INFO    opendrift.models.chemicaldrift:1861: partitioning: [450, 0, 50, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:00 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:00 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:00 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:00 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:00 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:00 INFO    opendrift.models.basemodel:2038: 2024-07-14 08:11:43.064707 - step 2 of 96 - 500 active elements (0 deactivated)
42:00 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:00 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:00 DEBUG   opendrift.models.basemodel:2057:               57.54891592344108 <- latitude  -> 57.65415249680431
42:00 DEBUG   opendrift.models.basemodel:2062:               10.509707641138847 <- longitude -> 10.708052630770919
42:00 DEBUG   opendrift.models.basemodel:2067:               -20.668350017073873   <- z ->   -0.054372738841432344
42:00 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:00 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:00 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:00 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:00 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:00 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:00 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:00 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:00 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 08:00:00 (before)
                2024-07-14 09:00:00 (after)
42:02 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:02 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:02 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:02 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:02 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:02 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:02 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 37x35x7) for time after (2024-07-14 09:00:00)
42:02 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 08:00:00) in space  (linearNDFast)
42:02 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:02 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 09:00:00) in space  (linearNDFast)
42:02 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:02 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 08:00:00, weight 0.80) and
                      after (2024-07-14 09:00:00, weight 0.20) in time
42:02 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:02 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.490303443070076 and -59.291958418660506 degrees.
42:02 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.490303443070076 and -59.291958418660506 degrees.
42:02 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:02 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:02 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:02 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:02 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:02 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:02 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:02 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:02 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:02 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:02 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:02 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:02 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:02 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:02 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:02 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:02 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:02 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:02 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:02 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:02 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.119647 (min) 0.208292 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0174901 (min) 0.340971 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 5.60122 (min) 6.97571 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.97371 (min) 2.50425 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.61547 (min) 23.7322 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.3217 (min) 16.6558 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 24.888 (min) 30.8495 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -2.07592e-05 (min) 0.000169641 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:02 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:02 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:02 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:02 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:02 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:02 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:02 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 26
42:02 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0]
42:02 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 0 3 3 3]
42:02 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[ 0.  0.  0. 25.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 2.  0.  0.  0.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
42:02 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:02 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:02 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:02 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:02 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03961204103421778
42:02 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:02 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:02 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:02 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:02 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:02 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:02 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:02 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
42:02 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:02 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:02 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:02 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:02 INFO    opendrift.models.chemicaldrift:1861: partitioning: [426, 0, 47, 27, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:02 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:02 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:02 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:02 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:02 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:02 INFO    opendrift.models.basemodel:2038: 2024-07-14 08:41:43.064707 - step 3 of 96 - 500 active elements (0 deactivated)
42:02 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:02 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:02 DEBUG   opendrift.models.basemodel:2057:               57.54981252596766 <- latitude  -> 57.655136670634526
42:02 DEBUG   opendrift.models.basemodel:2062:               10.513379634722995 <- longitude -> 10.707222840340984
42:02 DEBUG   opendrift.models.basemodel:2067:               -21.543664165120724   <- z ->   0.0
42:02 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:02 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:02 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:02 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:02 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 08:00:00 (before)
                2024-07-14 09:00:00 (after)
42:02 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 08:00:00) in space  (linearNDFast)
42:02 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:02 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 09:00:00) in space  (linearNDFast)
42:02 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:02 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 08:00:00, weight 0.30) and
                      after (2024-07-14 09:00:00, weight 0.70) in time
42:02 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:02 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48663144545624 and -59.292788221427735 degrees.
42:02 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48663144545624 and -59.292788221427735 degrees.
42:02 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:02 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:02 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:02 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:02 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:02 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:02 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:02 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:02 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:02 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:02 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:02 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:02 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:02 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:02 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:02 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:02 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:02 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:02 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:02 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:02 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:02 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.104279 (min) 0.228599 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0132044 (min) 0.293689 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 5.10955 (min) 6.08239 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.68942 (min) 2.17604 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.76522 (min) 23.6302 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.32 (min) 16.6875 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.1453 (min) 30.8526 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: 1.03197e-05 (min) 0.000141291 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:02 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:02 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:02 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:02 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:02 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:02 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:02 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:02 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 33
42:02 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
42:02 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
42:02 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[ 0.  0.  0. 58.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 2.  0.  0.  2.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
42:02 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:02 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:02 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:02 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:02 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.030145623651688148
42:02 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:02 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:02 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:02 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:02 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:02 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:02 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:02 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:02 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:02 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:02 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:02 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
42:02 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:02 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
42:02 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:02 INFO    opendrift.models.chemicaldrift:1861: partitioning: [393, 0, 45, 62, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:02 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:02 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:02 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:02 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:02 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:02 INFO    opendrift.models.basemodel:2038: 2024-07-14 09:11:43.064707 - step 4 of 96 - 500 active elements (0 deactivated)
42:02 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:02 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:02 DEBUG   opendrift.models.basemodel:2057:               57.55108669258288 <- latitude  -> 57.65711331012409
42:02 DEBUG   opendrift.models.basemodel:2062:               10.51723621383086 <- longitude -> 10.705598506302707
42:02 DEBUG   opendrift.models.basemodel:2067:               -21.506784439086914   <- z ->   0.0
42:02 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:02 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:02 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:02 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:02 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:02 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 09:00:00 (before)
                2024-07-14 10:00:00 (after)
42:04 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:04 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:04 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:04 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:04 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:04 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:04 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 37x34x7) for time after (2024-07-14 10:00:00)
42:04 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 09:00:00) in space  (linearNDFast)
42:04 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:04 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 10:00:00) in space  (linearNDFast)
42:04 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:04 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 09:00:00, weight 0.80) and
                      after (2024-07-14 10:00:00, weight 0.20) in time
42:04 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:04 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48277486506932 and -59.294412549123024 degrees.
42:04 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48277486506932 and -59.294412549123024 degrees.
42:04 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:04 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:04 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:04 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:04 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:04 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:04 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:04 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:04 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:04 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:04 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:04 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:04 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:04 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:04 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:04 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:04 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:04 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:04 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:04 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:04 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:04 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:04 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0968567 (min) 0.251381 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.00614461 (min) 0.248237 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 4.32383 (min) 5.08102 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.42833 (min) 2.09362 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.94217 (min) 23.5552 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.322 (min) 16.7044 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 24.9072 (min) 30.8567 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -5.96515e-06 (min) 0.000137253 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:04 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:04 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:04 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:04 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:04 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:04 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:04 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 19
42:04 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0]
42:04 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 0 3 3 3 3 3 3 3]
42:04 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[ 0.  0.  0. 76.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 2.  0.  0.  5.  0.]
 [ 1.  0.  1.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
42:04 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:04 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:04 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:04 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:04 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.021579344112910983
42:04 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:04 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:04 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:04 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:04 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:04 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:04 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:04 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:04 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:04 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:04 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:04 INFO    opendrift.models.chemicaldrift:1861: partitioning: [376, 0, 44, 80, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:04 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:04 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:04 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:04 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:04 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:04 INFO    opendrift.models.basemodel:2038: 2024-07-14 09:41:43.064707 - step 5 of 96 - 500 active elements (0 deactivated)
42:04 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:04 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:04 DEBUG   opendrift.models.basemodel:2057:               57.551871922518245 <- latitude  -> 57.65924401367123
42:04 DEBUG   opendrift.models.basemodel:2062:               10.51891050544613 <- longitude -> 10.703839414792123
42:04 DEBUG   opendrift.models.basemodel:2067:               -21.529945373535156   <- z ->   0.0
42:04 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:04 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:04 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:04 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:04 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 09:00:00 (before)
                2024-07-14 10:00:00 (after)
42:04 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 09:00:00) in space  (linearNDFast)
42:04 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:04 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 10:00:00) in space  (linearNDFast)
42:04 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:04 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 09:00:00, weight 0.30) and
                      after (2024-07-14 10:00:00, weight 0.70) in time
42:04 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:04 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48110058661881 and -59.296171644470476 degrees.
42:04 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48110058661881 and -59.296171644470476 degrees.
42:04 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:04 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:04 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:04 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:04 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:04 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:04 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:04 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:04 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:04 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:04 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:04 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:04 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:04 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:04 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:04 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:04 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:04 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:04 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:04 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:04 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:04 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:04 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:04 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0939358 (min) 0.253741 (max)
42:04 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.00908348 (min) 0.195521 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 3.38751 (min) 4.17803 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.42638 (min) 2.3794 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.1182 (min) 23.6228 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.327 (min) 16.7293 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.2583 (min) 30.8651 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: 6.79904e-06 (min) 0.000123297 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:05 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:05 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:05 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:05 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:05 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:05 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:05 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:05 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 15
42:05 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 0 0 2 0 0 0 0 0 0 0 0 0]
42:05 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 3 0 3 3 3 3 3 3 3 3 3]
42:05 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[ 0.  0.  0. 89.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 4.  0.  0.  6.  0.]
 [ 1.  0.  1.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
42:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:05 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:05 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:05 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.015101531521115173
42:05 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:05 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:05 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:05 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:05 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:05 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:05 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:05 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:05 INFO    opendrift.models.chemicaldrift:1861: partitioning: [365, 0, 41, 94, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:05 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:05 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:05 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:05 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:05 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:05 INFO    opendrift.models.basemodel:2038: 2024-07-14 10:11:43.064707 - step 6 of 96 - 500 active elements (0 deactivated)
42:05 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:05 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:05 DEBUG   opendrift.models.basemodel:2057:               57.552734960533016 <- latitude  -> 57.66053491772666
42:05 DEBUG   opendrift.models.basemodel:2062:               10.518917104975355 <- longitude -> 10.702652219641333
42:05 DEBUG   opendrift.models.basemodel:2067:               -23.030731525578503   <- z ->   -0.05954129797354532
42:05 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:05 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 10:00:00 (before)
                2024-07-14 11:00:00 (after)
42:07 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:07 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:07 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:07 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:07 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:07 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:07 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 37x34x7) for time after (2024-07-14 11:00:00)
42:07 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 10:00:00) in space  (linearNDFast)
42:07 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:07 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 11:00:00) in space  (linearNDFast)
42:07 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:07 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 10:00:00, weight 0.80) and
                      after (2024-07-14 11:00:00, weight 0.20) in time
42:07 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:07 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48109398136209 and -59.297358840516544 degrees.
42:07 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48109398136209 and -59.297358840516544 degrees.
42:07 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:07 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:07 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:07 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:07 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:07 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:07 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:07 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:07 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:07 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:07 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:07 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:07 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:07 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:07 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:07 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:07 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:07 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:07 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:07 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:07 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:07 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:07 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0845892 (min) 0.24515 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.00276476 (min) 0.156181 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 2.70968 (min) 3.44141 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.49156 (min) 2.59472 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.2657 (min) 23.4858 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.33 (min) 16.7677 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.3159 (min) 30.8663 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: 3.10528e-06 (min) 0.000106691 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:07 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:07 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:07 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:07 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:07 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:07 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:07 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 16
42:07 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
42:07 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
42:07 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 105.   0.]
 [  0.   0.   0.   0.   0.]
 [  4.   0.   0.   7.   0.]
 [  1.   0.   1.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:07 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:07 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:07 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:07 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:07 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.012569549946919079
42:07 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:07 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:07 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:07 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:07 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:07 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:07 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:07 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:07 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:07 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:07 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:07 INFO    opendrift.models.chemicaldrift:1861: partitioning: [349, 0, 38, 113, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:07 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:07 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:07 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:07 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:07 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:07 INFO    opendrift.models.basemodel:2038: 2024-07-14 10:41:43.064707 - step 7 of 96 - 500 active elements (0 deactivated)
42:07 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:07 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:07 DEBUG   opendrift.models.basemodel:2057:               57.55332414672443 <- latitude  -> 57.662911907525995
42:07 DEBUG   opendrift.models.basemodel:2062:               10.521956764932119 <- longitude -> 10.706344760787992
42:07 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   0.0
42:07 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:07 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:07 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:07 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:07 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 10:00:00 (before)
                2024-07-14 11:00:00 (after)
42:07 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 10:00:00) in space  (linearNDFast)
42:07 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:07 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 11:00:00) in space  (linearNDFast)
42:07 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:07 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 10:00:00, weight 0.30) and
                      after (2024-07-14 11:00:00, weight 0.70) in time
42:07 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:07 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47805432623872 and -59.293666300181556 degrees.
42:07 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47805432623872 and -59.293666300181556 degrees.
42:07 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:07 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:07 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:07 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:07 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:07 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:07 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:07 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:07 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:07 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:07 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:07 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:07 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:07 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:07 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:07 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:07 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:07 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:07 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:07 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:07 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:07 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:07 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0720972 (min) 0.23975 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.00398849 (min) 0.133439 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 2.06805 (min) 2.88714 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.58046 (min) 2.82221 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.301 (min) 23.3906 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.3301 (min) 16.8391 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.0807 (min) 30.8655 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -3.55092e-06 (min) 8.43783e-05 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:07 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:07 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:07 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:07 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:07 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:07 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:07 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:07 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 11
42:07 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 2 0 0 0 0 0 0 0]
42:07 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 3 3 3 3 3 3 3]
42:07 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 115.   0.]
 [  0.   0.   0.   0.   0.]
 [  5.   0.   0.  10.   0.]
 [  1.   0.   1.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:07 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:07 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:07 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:07 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:07 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.011257854296152354
42:07 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:07 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:07 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:07 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
42:07 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:07 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:07 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:07 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:07 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:07 INFO    opendrift.models.chemicaldrift:1861: partitioning: [340, 0, 37, 123, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:07 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:07 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:07 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:07 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:07 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:07 INFO    opendrift.models.basemodel:2038: 2024-07-14 11:11:43.064707 - step 8 of 96 - 500 active elements (0 deactivated)
42:07 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:07 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:07 DEBUG   opendrift.models.basemodel:2057:               57.554394016861586 <- latitude  -> 57.66506835561167
42:07 DEBUG   opendrift.models.basemodel:2062:               10.524821380942804 <- longitude -> 10.713367570265499
42:07 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.057414565555391095
42:07 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:07 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:07 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:07 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:07 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:07 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 11:00:00 (before)
                2024-07-14 12:00:00 (after)
42:09 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:09 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:09 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:09 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:09 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:09 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:09 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 38x34x7) for time after (2024-07-14 12:00:00)
42:09 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 11:00:00) in space  (linearNDFast)
42:09 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:09 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 12:00:00) in space  (linearNDFast)
42:09 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:09 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 11:00:00, weight 0.80) and
                      after (2024-07-14 12:00:00, weight 0.20) in time
42:09 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:09 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47518970909913 and -59.2866434825939 degrees.
42:09 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47518970909913 and -59.2866434825939 degrees.
42:09 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:09 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:09 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:09 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:09 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:09 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:09 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:09 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:09 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:09 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:09 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:09 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:09 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:09 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:09 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:09 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:09 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:09 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:09 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:09 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:09 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:09 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:09 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0641174 (min) 0.22667 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.00262998 (min) 0.123154 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.34953 (min) 2.61414 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.39712 (min) 3.44678 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.301 (min) 23.3906 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.332 (min) 16.8988 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.0762 (min) 30.864 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -8.05849e-06 (min) 6.23509e-05 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:09 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:09 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:09 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:09 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:09 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:09 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:09 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 22
42:09 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 3 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0]
42:09 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 0 3 3 3 3 3 3 3 3 3 0 3 3 3 3 3 3 3]
42:09 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 135.   0.]
 [  0.   0.   0.   0.   0.]
 [  6.   0.   0.  10.   0.]
 [  2.   0.   1.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:09 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:09 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:09 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:09 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:09 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.010578581001524342
42:09 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:09 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:09 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:09 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:09 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:09 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:09 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:09 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:09 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:09 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:09 INFO    opendrift.models.chemicaldrift:1861: partitioning: [322, 0, 35, 143, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:09 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:09 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:09 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:09 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:09 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:09 INFO    opendrift.models.basemodel:2038: 2024-07-14 11:41:43.064707 - step 9 of 96 - 500 active elements (0 deactivated)
42:09 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:09 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:09 DEBUG   opendrift.models.basemodel:2057:               57.55536075924211 <- latitude  -> 57.666754909295776
42:09 DEBUG   opendrift.models.basemodel:2062:               10.526537717828363 <- longitude -> 10.720196764804065
42:09 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   0.0
42:09 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:09 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:09 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:09 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:09 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 11:00:00 (before)
                2024-07-14 12:00:00 (after)
42:09 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 11:00:00) in space  (linearNDFast)
42:09 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:09 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 12:00:00) in space  (linearNDFast)
42:09 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:09 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 11:00:00, weight 0.30) and
                      after (2024-07-14 12:00:00, weight 0.70) in time
42:09 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:09 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.473473378878765 and -59.27981428977388 degrees.
42:09 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.473473378878765 and -59.27981428977388 degrees.
42:09 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:09 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:09 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:09 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:09 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:09 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:09 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:09 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:09 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:09 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:09 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:09 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:09 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:09 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:09 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:09 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:09 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:09 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:09 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:09 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:09 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:09 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:09 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0526958 (min) 0.196497 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.00196517 (min) 0.130446 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.184233 (min) 2.68239 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.300236 (min) 6.50561 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.301 (min) 23.3906 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.337 (min) 16.9758 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.5071 (min) 30.861 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -2.98384e-05 (min) 5.68037e-05 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:09 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:09 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:09 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
42:09 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:09 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:09 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:09 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:09 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 13
42:09 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0]
42:09 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3]
42:09 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 148.   0.]
 [  0.   0.   0.   0.   0.]
 [  6.   0.   0.  11.   0.]
 [  2.   0.   1.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:09 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:09 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:09 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:09 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:09 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.030758062734808956
42:09 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:09 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:09 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:09 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:09 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:09 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:09 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:09 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:09 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:09 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:09 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:09 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:09 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:09 INFO    opendrift.models.chemicaldrift:1861: partitioning: [309, 0, 33, 158, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:09 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:09 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:09 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:09 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:09 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:09 INFO    opendrift.models.basemodel:2038: 2024-07-14 12:11:43.064707 - step 10 of 96 - 500 active elements (0 deactivated)
42:09 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:09 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:09 DEBUG   opendrift.models.basemodel:2057:               57.55611244904962 <- latitude  -> 57.66820363394315
42:09 DEBUG   opendrift.models.basemodel:2062:               10.52665246406677 <- longitude -> 10.723617342094972
42:09 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   0.0
42:09 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:09 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:09 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:09 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:09 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:09 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 12:00:00 (before)
                2024-07-14 13:00:00 (after)
42:11 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:11 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:11 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:11 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:11 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:11 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:11 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 39x34x7) for time after (2024-07-14 13:00:00)
42:11 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 12:00:00) in space  (linearNDFast)
42:11 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:11 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 13:00:00) in space  (linearNDFast)
42:11 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:11 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 12:00:00, weight 0.80) and
                      after (2024-07-14 13:00:00, weight 0.20) in time
42:11 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:11 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47335862447204 and -59.276393709604285 degrees.
42:11 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47335862447204 and -59.276393709604285 degrees.
42:11 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:11 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:11 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:11 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:11 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:11 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:11 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:11 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:11 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:11 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:11 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:11 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:11 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:11 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:11 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:11 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:11 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:11 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:11 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:11 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:11 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0478906 (min) 0.167302 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0193551 (min) 0.146576 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.657307 (min) 2.36082 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.566524 (min) 8.54852 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.301 (min) 23.3906 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.34 (min) 17.0241 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.2527 (min) 30.857 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -4.90009e-05 (min) 4.19971e-05 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:11 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:11 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:11 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:11 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:11 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:11 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:11 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 11
42:11 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0]
42:11 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3]
42:11 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 159.   0.]
 [  0.   0.   0.   0.   0.]
 [  6.   0.   0.  13.   0.]
 [  2.   0.   1.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:11 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:11 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:11 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:11 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:11 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05291069254579234
42:11 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:11 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:11 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:11 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:11 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:11 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:11 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:11 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:11 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:11 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:11 INFO    opendrift.models.chemicaldrift:1861: partitioning: [298, 0, 32, 170, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:11 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:11 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:11 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:11 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:11 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:11 INFO    opendrift.models.basemodel:2038: 2024-07-14 12:41:43.064707 - step 11 of 96 - 500 active elements (0 deactivated)
42:11 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:11 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:11 DEBUG   opendrift.models.basemodel:2057:               57.55713610550551 <- latitude  -> 57.67057259894216
42:11 DEBUG   opendrift.models.basemodel:2062:               10.528648393610515 <- longitude -> 10.728510020573239
42:11 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   0.0
42:11 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:11 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:11 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:11 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:11 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 12:00:00 (before)
                2024-07-14 13:00:00 (after)
42:11 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 12:00:00) in space  (linearNDFast)
42:11 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:11 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 13:00:00) in space  (linearNDFast)
42:11 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:11 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 12:00:00, weight 0.30) and
                      after (2024-07-14 13:00:00, weight 0.70) in time
42:11 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:11 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47136268015958 and -59.271501035616915 degrees.
42:11 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47136268015958 and -59.271501035616915 degrees.
42:11 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:11 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:11 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:11 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:11 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:11 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:11 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:11 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:11 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:11 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:11 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:11 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:11 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:11 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:11 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:11 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:11 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:11 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:11 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:11 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:11 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0501532 (min) 0.133517 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0237622 (min) 0.146474 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.667249 (min) 2.17013 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -1.12498 (min) 8.54359 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.301 (min) 23.3906 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.3401 (min) 17.1049 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.7613 (min) 30.8516 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -6.3076e-05 (min) 2.74903e-05 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:11 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:11 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:11 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:11 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:11 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:11 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:11 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:11 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 17
42:11 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0]
42:11 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 0 3 3 3 3 3 3 3]
42:11 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 175.   0.]
 [  0.   0.   0.   0.   0.]
 [  6.   0.   0.  14.   0.]
 [  3.   0.   1.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:11 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:11 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:11 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:11 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:11 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.052750413298101914
42:11 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:11 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:11 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:11 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:11 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:11 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:11 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:11 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:11 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:11 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:11 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:11 INFO    opendrift.models.chemicaldrift:1861: partitioning: [283, 0, 31, 186, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:11 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:11 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:11 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:11 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
42:11 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:11 INFO    opendrift.models.basemodel:2038: 2024-07-14 13:11:43.064707 - step 12 of 96 - 500 active elements (0 deactivated)
42:11 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:11 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:11 DEBUG   opendrift.models.basemodel:2057:               57.558211205096875 <- latitude  -> 57.67287018274753
42:11 DEBUG   opendrift.models.basemodel:2062:               10.52980462815588 <- longitude -> 10.726998905717235
42:11 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.13203813926239374
42:11 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:11 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:11 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:11 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:11 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:11 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 13:00:00 (before)
                2024-07-14 14:00:00 (after)
42:13 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:13 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:13 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:13 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:13 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:13 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:13 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 39x34x7) for time after (2024-07-14 14:00:00)
42:13 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 13:00:00) in space  (linearNDFast)
42:13 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:13 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 14:00:00) in space  (linearNDFast)
42:13 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:13 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 13:00:00, weight 0.80) and
                      after (2024-07-14 14:00:00, weight 0.20) in time
42:13 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:13 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47020644995283 and -59.273012147399655 degrees.
42:13 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47020644995283 and -59.273012147399655 degrees.
42:13 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:13 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:13 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:13 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:13 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:13 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:13 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:13 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:13 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:13 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:13 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:13 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:13 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:13 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:13 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:13 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:13 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:13 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:13 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:13 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:13 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0435728 (min) 0.116559 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0233584 (min) 0.168733 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.823563 (min) 2.56679 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.041234 (min) 8.69354 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.301 (min) 23.3906 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.342 (min) 17.1005 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.7893 (min) 30.8461 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -7.78424e-05 (min) 1.73615e-05 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:13 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:13 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:13 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:13 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:13 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:13 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:13 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 14
42:13 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0]
42:13 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3]
42:13 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 189.   0.]
 [  0.   0.   0.   0.   0.]
 [  6.   0.   0.  15.   0.]
 [  3.   0.   1.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:13 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:13 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:13 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:13 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:13 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0546272151860284
42:13 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:13 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:13 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:13 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:13 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:13 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2
42:13 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:13 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
42:13 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:13 INFO    opendrift.models.chemicaldrift:1861: partitioning: [269, 0, 32, 199, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:13 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:13 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:13 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:13 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:13 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:13 INFO    opendrift.models.basemodel:2038: 2024-07-14 13:41:43.064707 - step 13 of 96 - 500 active elements (0 deactivated)
42:13 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:13 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:13 DEBUG   opendrift.models.basemodel:2057:               57.558880505746494 <- latitude  -> 57.675466232705354
42:13 DEBUG   opendrift.models.basemodel:2062:               10.530294118562681 <- longitude -> 10.725686012539752
42:13 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.041404108752811086
42:13 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:13 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:13 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:13 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:13 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 13:00:00 (before)
                2024-07-14 14:00:00 (after)
42:13 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 13:00:00) in space  (linearNDFast)
42:13 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:13 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 14:00:00) in space  (linearNDFast)
42:13 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:13 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 13:00:00, weight 0.30) and
                      after (2024-07-14 14:00:00, weight 0.70) in time
42:13 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:13 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.469716971238505 and -59.274325047251814 degrees.
42:13 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.469716971238505 and -59.274325047251814 degrees.
42:13 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:13 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:13 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:13 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:13 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:13 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:13 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:13 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:13 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:13 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:13 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:13 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:13 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:13 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:13 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:13 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:13 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:13 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:13 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:13 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:13 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0366703 (min) 0.125748 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0233475 (min) 0.23164 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.27397 (min) 1.34211 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.48014 (min) 8.87739 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.301 (min) 23.3906 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.347 (min) 17.1552 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.5691 (min) 30.8397 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -9.36872e-05 (min) 1.86093e-05 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:13 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:13 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:13 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:13 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:13 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:13 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:13 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:13 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 12
42:13 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 2 0]
42:13 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 0 3]
42:13 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 200.   0.]
 [  0.   0.   0.   0.   0.]
 [  7.   0.   0.  16.   0.]
 [  3.   0.   3.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:13 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:13 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:13 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:13 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:13 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05718402911685003
42:13 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:13 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:13 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:13 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:13 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:13 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:13 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:13 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
42:13 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:13 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
42:13 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:13 INFO    opendrift.models.chemicaldrift:1861: partitioning: [259, 0, 33, 208, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:13 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:13 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:13 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:13 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:13 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:13 INFO    opendrift.models.basemodel:2038: 2024-07-14 14:11:43.064707 - step 14 of 96 - 500 active elements (0 deactivated)
42:13 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:13 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:13 DEBUG   opendrift.models.basemodel:2057:               57.561111282784914 <- latitude  -> 57.67737778864793
42:13 DEBUG   opendrift.models.basemodel:2062:               10.530943970674432 <- longitude -> 10.728555028759962
42:13 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.10450834041750268
42:13 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:13 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:13 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:13 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:13 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:13 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 14:00:00 (before)
                2024-07-14 15:00:00 (after)
42:15 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:15 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:15 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:15 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:15 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:15 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:15 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 39x34x7) for time after (2024-07-14 15:00:00)
42:15 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 14:00:00) in space  (linearNDFast)
42:15 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:15 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 15:00:00) in space  (linearNDFast)
42:15 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:15 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 14:00:00, weight 0.80) and
                      after (2024-07-14 15:00:00, weight 0.20) in time
42:15 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:15 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46906711468989 and -59.27145601272658 degrees.
42:15 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46906711468989 and -59.27145601272658 degrees.
42:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:15 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:15 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:15 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:15 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:15 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:15 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:15 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:15 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:15 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:15 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0347755 (min) 0.103806 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0247696 (min) 0.284039 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.13663 (min) 0.401917 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 7.23523 (min) 9.21762 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.301 (min) 23.3906 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.352 (min) 17.1527 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.7371 (min) 30.8339 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000108275 (min) 1.57999e-05 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:15 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:15 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:15 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:15 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:15 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:15 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:15 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 11
42:15 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0]
42:15 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3]
42:15 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 211.   0.]
 [  0.   0.   0.   0.   0.]
 [  7.   0.   0.  17.   0.]
 [  3.   0.   6.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:15 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:15 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:15 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.06208542351575379
42:15 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:15 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:15 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:15 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:15 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
42:15 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
42:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:15 INFO    opendrift.models.chemicaldrift:1861: partitioning: [248, 0, 33, 219, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:15 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:15 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:15 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:15 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:15 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:15 INFO    opendrift.models.basemodel:2038: 2024-07-14 14:41:43.064707 - step 15 of 96 - 500 active elements (0 deactivated)
42:15 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:15 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:15 DEBUG   opendrift.models.basemodel:2057:               57.56199179119016 <- latitude  -> 57.67984558551712
42:15 DEBUG   opendrift.models.basemodel:2062:               10.531733742507749 <- longitude -> 10.727813948406187
42:15 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.13882385878442782
42:15 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:15 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 14:00:00 (before)
                2024-07-14 15:00:00 (after)
42:15 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 14:00:00) in space  (linearNDFast)
42:15 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:15 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 15:00:00) in space  (linearNDFast)
42:15 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:15 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 14:00:00, weight 0.30) and
                      after (2024-07-14 15:00:00, weight 0.70) in time
42:15 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:15 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468277340693916 and -59.27219709494028 degrees.
42:15 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468277340693916 and -59.27219709494028 degrees.
42:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:15 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:15 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:15 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:15 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:15 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:15 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:15 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:15 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:15 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:15 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0346557 (min) 0.107398 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0284278 (min) 0.339383 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.2223 (min) -0.098428 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 7.96188 (min) 8.9689 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.301 (min) 23.3906 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.357 (min) 17.1637 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.9444 (min) 30.8268 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.0001209 (min) 2.9073e-05 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:15 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:15 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:15 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:15 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:15 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:15 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:15 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:15 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 15
42:15 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 2 0 0 0 3 0 0 0 0 0 2 0]
42:15 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 3 3 3 0 3 3 3 3 3 0 3]
42:15 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 223.   0.]
 [  0.   0.   0.   0.   0.]
 [  9.   0.   0.  18.   0.]
 [  4.   0.   7.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:15 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:15 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:15 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05865519201004343
42:15 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:15 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:15 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:15 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:15 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
42:15 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
42:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:15 INFO    opendrift.models.chemicaldrift:1861: partitioning: [239, 0, 32, 229, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:15 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:15 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:15 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:15 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:15 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:15 INFO    opendrift.models.basemodel:2038: 2024-07-14 15:11:43.064707 - step 16 of 96 - 500 active elements (0 deactivated)
42:15 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:15 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:15 DEBUG   opendrift.models.basemodel:2057:               57.56411085004407 <- latitude  -> 57.68243874571437
42:15 DEBUG   opendrift.models.basemodel:2062:               10.532470350635368 <- longitude -> 10.727813948406189
42:15 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   0.0
42:15 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:15 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 15:00:00 (before)
                2024-07-14 16:00:00 (after)
42:17 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:17 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:17 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:17 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:17 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:17 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:17 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 40x34x7) for time after (2024-07-14 16:00:00)
42:17 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 15:00:00) in space  (linearNDFast)
42:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:17 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 16:00:00) in space  (linearNDFast)
42:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:17 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 15:00:00, weight 0.80) and
                      after (2024-07-14 16:00:00, weight 0.20) in time
42:17 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46754073188413 and -59.27219709494028 degrees.
42:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46754073188413 and -59.27219709494028 degrees.
42:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:17 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:17 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:17 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:17 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0377509 (min) 0.114445 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0322438 (min) 0.370787 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.38091 (min) -0.529936 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 7.79756 (min) 8.80413 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.301 (min) 23.3906 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.36 (min) 17.1385 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.991 (min) 30.8211 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000130241 (min) 6.61251e-05 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:17 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:17 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:17 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:17 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:17 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:17 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:17 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 13
42:17 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0]
42:17 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3]
42:17 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 236.   0.]
 [  0.   0.   0.   0.   0.]
 [  9.   0.   0.  18.   0.]
 [  4.   0.   8.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:17 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:17 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:17 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.057223012430425164
42:17 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:17 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:17 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:17 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:17 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:17 INFO    opendrift.models.chemicaldrift:1861: partitioning: [226, 0, 32, 242, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:17 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:17 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:17 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:17 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:17 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:17 INFO    opendrift.models.basemodel:2038: 2024-07-14 15:41:43.064707 - step 17 of 96 - 500 active elements (0 deactivated)
42:17 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:17 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:17 DEBUG   opendrift.models.basemodel:2057:               57.567043242025356 <- latitude  -> 57.686396656952105
42:17 DEBUG   opendrift.models.basemodel:2062:               10.533502764271203 <- longitude -> 10.72781394840619
42:17 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   0.0
42:17 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:17 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 15:00:00 (before)
                2024-07-14 16:00:00 (after)
42:17 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 15:00:00) in space  (linearNDFast)
42:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:17 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 16:00:00) in space  (linearNDFast)
42:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:17 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 15:00:00, weight 0.30) and
                      after (2024-07-14 16:00:00, weight 0.70) in time
42:17 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46650831815573 and -59.27219709494028 degrees.
42:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46650831815573 and -59.27219709494028 degrees.
42:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:17 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:17 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:17 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:17 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0417876 (min) 0.125026 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0354123 (min) 0.394819 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.69265 (min) -0.879894 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 7.7912 (min) 9.20751 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.301 (min) 23.3906 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.36 (min) 17.0677 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.9259 (min) 30.8167 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000123704 (min) 7.88572e-05 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:17 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:17 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:17 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:17 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:17 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:17 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:17 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:17 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 15
42:17 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 3 0 3 0 0 0 0 0 0 0 0 0]
42:17 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 3 0 3 3 3 3 3 3 3 3 3]
42:17 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 249.   0.]
 [  0.   0.   0.   0.   0.]
 [  9.   0.   0.  18.   0.]
 [  6.   0.   8.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:17 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:17 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:17 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.06371549230860458
42:17 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:17 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:17 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:17 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:17 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:17 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:17 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:17 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
42:17 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
42:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:17 INFO    opendrift.models.chemicaldrift:1861: partitioning: [215, 0, 34, 251, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:17 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:17 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:17 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:17 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:17 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:17 INFO    opendrift.models.basemodel:2038: 2024-07-14 16:11:43.064707 - step 18 of 96 - 500 active elements (0 deactivated)
42:17 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:17 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:17 DEBUG   opendrift.models.basemodel:2057:               57.567392859920766 <- latitude  -> 57.68888975928663
42:17 DEBUG   opendrift.models.basemodel:2062:               10.53417838155611 <- longitude -> 10.727813948406192
42:17 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.28486844483474305
42:17 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:17 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 16:00:00 (before)
                2024-07-14 17:00:00 (after)
42:19 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:19 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:19 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:19 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:19 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:19 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:19 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 41x34x7) for time after (2024-07-14 17:00:00)
42:19 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 16:00:00) in space  (linearNDFast)
42:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:19 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 17:00:00) in space  (linearNDFast)
42:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:19 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 16:00:00, weight 0.80) and
                      after (2024-07-14 17:00:00, weight 0.20) in time
42:19 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832703051674 and -59.27219709494028 degrees.
42:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832703051674 and -59.27219709494028 degrees.
42:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:19 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:19 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:19 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:19 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0462199 (min) 0.149912 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0284747 (min) 0.426789 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.53548 (min) -0.656492 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 7.51163 (min) 9.27415 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.3786 (min) 23.3906 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.36 (min) 17.108 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.8865 (min) 30.813 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000110461 (min) 8.37018e-05 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:19 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:19 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:19 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:19 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:19 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:19 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:19 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 17
42:19 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
42:19 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
42:19 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 266.   0.]
 [  0.   0.   0.   0.   0.]
 [  9.   0.   0.  19.   0.]
 [  6.   0.  11.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:19 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:19 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:19 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.06439257054117724
42:19 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:19 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:19 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:19 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:19 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
42:19 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
42:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:19 INFO    opendrift.models.chemicaldrift:1861: partitioning: [198, 0, 34, 268, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:19 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:19 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:19 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:19 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:19 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:19 INFO    opendrift.models.basemodel:2038: 2024-07-14 16:41:43.064707 - step 19 of 96 - 500 active elements (0 deactivated)
42:19 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:19 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:19 DEBUG   opendrift.models.basemodel:2057:               57.567392859920766 <- latitude  -> 57.693813294124354
42:19 DEBUG   opendrift.models.basemodel:2062:               10.53417838155611 <- longitude -> 10.727813948406192
42:19 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   0.0
42:19 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 16:00:00 (before)
                2024-07-14 17:00:00 (after)
42:19 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 16:00:00) in space  (linearNDFast)
42:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:19 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 17:00:00) in space  (linearNDFast)
42:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:19 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 16:00:00, weight 0.30) and
                      after (2024-07-14 17:00:00, weight 0.70) in time
42:19 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832703051674 and -59.27219709494028 degrees.
42:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832703051674 and -59.27219709494028 degrees.
42:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:19 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:19 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:19 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:19 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0512692 (min) 0.18003 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0205176 (min) 0.436444 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.6467 (min) 0.58171 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 7.5293 (min) 8.46906 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.4721 (min) 23.3906 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.36 (min) 17.0618 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 25.9276 (min) 30.8186 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -8.67551e-05 (min) 7.60006e-05 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:19 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:19 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:19 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:19 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:19 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:19 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:19 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:19 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 15
42:19 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 2 0 0 2 0 0 0 0 0 0 0]
42:19 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 0 3 3 0 3 3 3 3 3 3 3]
42:19 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 279.   0.]
 [  0.   0.   0.   0.   0.]
 [ 11.   0.   0.  20.   0.]
 [  6.   0.  12.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:19 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:19 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:19 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05231691193144934
42:19 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:19 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:19 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:19 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:19 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:19 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:19 INFO    opendrift.models.chemicaldrift:1861: partitioning: [187, 0, 31, 282, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:19 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:19 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:19 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:19 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:19 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:19 INFO    opendrift.models.basemodel:2038: 2024-07-14 17:11:43.064707 - step 20 of 96 - 500 active elements (0 deactivated)
42:19 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:19 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:19 DEBUG   opendrift.models.basemodel:2057:               57.567392859920766 <- latitude  -> 57.699874791200195
42:19 DEBUG   opendrift.models.basemodel:2062:               10.534178381556108 <- longitude -> 10.730276340283217
42:19 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.06198773332783669
42:19 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 17:00:00 (before)
                2024-07-14 18:00:00 (after)
42:21 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:21 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:21 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:21 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:21 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:21 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:21 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 42x34x7) for time after (2024-07-14 18:00:00)
42:21 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 17:00:00) in space  (linearNDFast)
42:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:21 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 18:00:00) in space  (linearNDFast)
42:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:21 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 17:00:00, weight 0.80) and
                      after (2024-07-14 18:00:00, weight 0.20) in time
42:21 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46583269873819 and -59.26973469601283 degrees.
42:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46583269873819 and -59.26973469601283 degrees.
42:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:21 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:21 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:21 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:21 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0603038 (min) 0.207887 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0133136 (min) 0.440818 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.971477 (min) 1.21138 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 6.8891 (min) 8.22036 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.5669 (min) 23.3906 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.36 (min) 17.0879 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 26.0925 (min) 30.8186 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -5.62451e-05 (min) 6.88345e-05 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:21 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:21 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:21 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:21 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:21 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:21 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:21 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 12
42:21 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 2 0]
42:21 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 0 3]
42:21 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 290.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  21.   0.]
 [  6.   0.  12.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:21 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:21 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:21 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.049894901465782536
42:21 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:21 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:21 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:21 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
42:21 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
42:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:21 INFO    opendrift.models.chemicaldrift:1861: partitioning: [177, 0, 29, 294, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:21 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:21 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:21 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:21 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:21 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:21 INFO    opendrift.models.basemodel:2038: 2024-07-14 17:41:43.064707 - step 21 of 96 - 500 active elements (0 deactivated)
42:21 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:21 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:21 DEBUG   opendrift.models.basemodel:2057:               57.567392859920766 <- latitude  -> 57.704758343145244
42:21 DEBUG   opendrift.models.basemodel:2062:               10.534178381556112 <- longitude -> 10.730914977912622
42:21 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.1322058766617007
42:21 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 17:00:00 (before)
                2024-07-14 18:00:00 (after)
42:21 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 17:00:00) in space  (linearNDFast)
42:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:21 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 18:00:00) in space  (linearNDFast)
42:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:21 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 17:00:00, weight 0.30) and
                      after (2024-07-14 18:00:00, weight 0.70) in time
42:21 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.26909606748612 degrees.
42:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.26909606748612 degrees.
42:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:21 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:21 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:21 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:21 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0723809 (min) 0.237203 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.00864508 (min) 0.435123 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.629426 (min) 0.833781 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 6.32672 (min) 7.95531 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.6713 (min) 23.3906 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.3601 (min) 17.082 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 26.5162 (min) 30.821 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -4.76151e-05 (min) 8.95774e-05 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:21 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:21 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:21 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:21 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:21 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:21 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:21 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
42:21 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0]
42:21 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3]
42:21 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 298.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  23.   0.]
 [  6.   0.  13.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:21 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:21 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:21 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04595376330903862
42:21 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:21 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:21 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:21 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:21 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:21 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:21 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:21 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:21 INFO    opendrift.models.chemicaldrift:1861: partitioning: [169, 0, 27, 304, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:21 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:21 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:21 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:21 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:21 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:21 INFO    opendrift.models.basemodel:2038: 2024-07-14 18:11:43.064707 - step 22 of 96 - 500 active elements (0 deactivated)
42:21 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:21 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:21 DEBUG   opendrift.models.basemodel:2057:               57.567392859920766 <- latitude  -> 57.70736924335792
42:21 DEBUG   opendrift.models.basemodel:2062:               10.534178381556112 <- longitude -> 10.73340304081897
42:21 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.08530300751855735
42:21 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 18:00:00 (before)
                2024-07-14 19:00:00 (after)
42:23 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:23 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:23 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:23 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:23 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:23 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:23 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 43x34x7) for time after (2024-07-14 19:00:00)
42:23 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 18:00:00) in space  (linearNDFast)
42:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:23 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 19:00:00) in space  (linearNDFast)
42:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:23 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 18:00:00, weight 0.80) and
                      after (2024-07-14 19:00:00, weight 0.20) in time
42:23 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.266607999012045 degrees.
42:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.266607999012045 degrees.
42:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:23 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:23 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:23 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:23 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0841523 (min) 0.258749 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.00751596 (min) 0.434056 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.639508 (min) 0.648368 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 6.08082 (min) 8.05006 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7033 (min) 23.3906 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.3601 (min) 17.0722 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 26.3922 (min) 30.8243 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -3.62729e-05 (min) 0.000106354 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:23 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:23 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:23 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:23 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:23 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:23 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:23 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
42:23 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0]
42:23 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3]
42:23 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 303.   0.]
 [  0.   0.   0.   0.   0.]
 [ 12.   0.   0.  25.   0.]
 [  6.   0.  13.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:23 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:23 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:23 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04683223296885092
42:23 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:23 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:23 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:23 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:23 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:23 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:23 INFO    opendrift.models.chemicaldrift:1861: partitioning: [164, 0, 27, 309, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:23 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:23 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:23 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:23 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:23 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:23 INFO    opendrift.models.basemodel:2038: 2024-07-14 18:41:43.064707 - step 23 of 96 - 500 active elements (0 deactivated)
42:23 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:23 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:23 DEBUG   opendrift.models.basemodel:2057:               57.567392859920766 <- latitude  -> 57.70989386377842
42:23 DEBUG   opendrift.models.basemodel:2062:               10.534178381556112 <- longitude -> 10.733802755293544
42:23 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.10544269523312222
42:23 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:23 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 18:00:00 (before)
                2024-07-14 19:00:00 (after)
42:23 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 18:00:00) in space  (linearNDFast)
42:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:23 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 19:00:00) in space  (linearNDFast)
42:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:23 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 18:00:00, weight 0.30) and
                      after (2024-07-14 19:00:00, weight 0.70) in time
42:23 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.266208283631535 degrees.
42:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.266208283631535 degrees.
42:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:23 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:23 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:23 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:23 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.093217 (min) 0.278246 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0119091 (min) 0.393313 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.19899 (min) 0.50361 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 6.34618 (min) 8.17008 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 23.3906 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.36 (min) 16.9958 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 26.5756 (min) 30.829 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -2.32001e-05 (min) 0.000116942 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:23 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:23 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:23 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:23 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:23 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:23 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:23 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:23 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
42:23 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 2 0 0 0]
42:23 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 3 3 3]
42:23 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 309.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  25.   0.]
 [  6.   0.  13.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:23 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:23 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:23 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.048273559964288164
42:23 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:23 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:23 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:23 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:23 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:23 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:23 INFO    opendrift.models.chemicaldrift:1861: partitioning: [159, 0, 26, 315, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:23 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:23 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:23 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:23 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:23 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:23 INFO    opendrift.models.basemodel:2038: 2024-07-14 19:11:43.064707 - step 24 of 96 - 500 active elements (0 deactivated)
42:23 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:23 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:23 DEBUG   opendrift.models.basemodel:2057:               57.567392859920766 <- latitude  -> 57.716060466423656
42:23 DEBUG   opendrift.models.basemodel:2062:               10.534178381556108 <- longitude -> 10.737651474870994
42:23 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.16868218146704528
42:23 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:23 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 19:00:00 (before)
                2024-07-14 20:00:00 (after)
42:25 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:25 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:25 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:25 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:25 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:25 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:25 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 45x34x7) for time after (2024-07-14 20:00:00)
42:25 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 19:00:00) in space  (linearNDFast)
42:25 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:25 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 20:00:00) in space  (linearNDFast)
42:25 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:25 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 19:00:00, weight 0.80) and
                      after (2024-07-14 20:00:00, weight 0.20) in time
42:25 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:25 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.262359562759414 degrees.
42:25 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.262359562759414 degrees.
42:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:25 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:25 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:25 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:25 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:25 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:25 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:25 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:25 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:25 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:25 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0992906 (min) 0.289502 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0169908 (min) 0.361926 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.9115 (min) -0.169734 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 6.5159 (min) 8.43318 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 23.4542 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.3599 (min) 16.9866 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 26.799 (min) 30.8343 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000156007 (min) 0.000125339 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:25 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:25 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:25 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:25 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:25 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:25 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:25 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
42:25 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0]
42:25 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3]
42:25 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 312.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  25.   0.]
 [  6.   0.  13.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:25 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:25 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:25 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05209487085730687
42:25 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:25 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:25 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:25 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:25 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:25 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:25 INFO    opendrift.models.chemicaldrift:1861: partitioning: [156, 0, 26, 318, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:25 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:25 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:25 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:25 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:25 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:25 INFO    opendrift.models.basemodel:2038: 2024-07-14 19:41:43.064707 - step 25 of 96 - 500 active elements (0 deactivated)
42:25 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:25 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:25 DEBUG   opendrift.models.basemodel:2057:               57.567392859920766 <- latitude  -> 57.718818087298146
42:25 DEBUG   opendrift.models.basemodel:2062:               10.534178381556112 <- longitude -> 10.741255249288058
42:25 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.1998960945565753
42:25 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:25 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 19:00:00 (before)
                2024-07-14 20:00:00 (after)
42:25 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 19:00:00) in space  (linearNDFast)
42:25 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:25 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 20:00:00) in space  (linearNDFast)
42:25 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:25 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 19:00:00, weight 0.30) and
                      after (2024-07-14 20:00:00, weight 0.70) in time
42:25 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:25 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.258755787198176 degrees.
42:25 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.258755787198176 degrees.
42:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:25 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:25 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:25 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:25 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:25 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:25 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:25 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:25 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:25 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:25 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.100697 (min) 0.289604 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0222922 (min) 0.329458 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.86276 (min) -1.75634 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 6.65474 (min) 8.68208 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 23.6553 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.3558 (min) 16.98 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 26.3891 (min) 30.8408 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00018731 (min) 0.000133308 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:25 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:25 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:25 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:25 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:25 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:25 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:25 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:25 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 12
42:25 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0]
42:25 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3]
42:25 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 324.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  25.   0.]
 [  6.   0.  13.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:25 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:25 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:25 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.057850604237859
42:25 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:25 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:25 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:25 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:25 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:25 INFO    opendrift.models.chemicaldrift:1861: partitioning: [144, 0, 26, 330, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:25 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:25 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:25 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:25 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:25 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:25 INFO    opendrift.models.basemodel:2038: 2024-07-14 20:11:43.064707 - step 26 of 96 - 500 active elements (0 deactivated)
42:25 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:25 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:25 DEBUG   opendrift.models.basemodel:2057:               57.56739285992077 <- latitude  -> 57.72158196268585
42:25 DEBUG   opendrift.models.basemodel:2062:               10.534178381556112 <- longitude -> 10.749451301113258
42:25 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   0.0
42:25 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:25 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 20:00:00 (before)
                2024-07-14 21:00:00 (after)
42:27 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:27 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:27 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:27 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:27 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:27 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:27 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 45x34x7) for time after (2024-07-14 21:00:00)
42:27 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 20:00:00) in space  (linearNDFast)
42:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:27 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 21:00:00) in space  (linearNDFast)
42:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:27 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 20:00:00, weight 0.80) and
                      after (2024-07-14 21:00:00, weight 0.20) in time
42:27 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.25055972176204 degrees.
42:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.25055972176204 degrees.
42:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:27 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:27 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:27 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:27 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.100161 (min) 0.277917 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0152158 (min) 0.294652 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.92627 (min) -2.40018 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 7.08431 (min) 8.84467 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 24.073 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.3513 (min) 16.9016 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 26.4178 (min) 30.8473 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000200753 (min) 0.000137356 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:27 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:27 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:27 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:27 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:27 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:27 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:27 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 11
42:27 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 3 0 0 0 0 0 3 0 0 0]
42:27 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 3 3 3 0 3 3 3]
42:27 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 333.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  25.   0.]
 [  8.   0.  13.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:27 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:27 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:27 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.061958736572778755
42:27 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:27 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:27 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:27 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:27 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:27 INFO    opendrift.models.chemicaldrift:1861: partitioning: [137, 0, 26, 337, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:27 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:27 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:27 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:27 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:27 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:27 INFO    opendrift.models.basemodel:2038: 2024-07-14 20:41:43.064707 - step 27 of 96 - 500 active elements (0 deactivated)
42:27 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:27 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:27 DEBUG   opendrift.models.basemodel:2057:               57.56739285992077 <- latitude  -> 57.72454165774365
42:27 DEBUG   opendrift.models.basemodel:2062:               10.534178381556108 <- longitude -> 10.757413231842452
42:27 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.16780584758335182
42:27 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:27 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 20:00:00 (before)
                2024-07-14 21:00:00 (after)
42:27 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 20:00:00) in space  (linearNDFast)
42:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:27 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 21:00:00) in space  (linearNDFast)
42:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:27 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 20:00:00, weight 0.30) and
                      after (2024-07-14 21:00:00, weight 0.70) in time
42:27 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.24259779602591 degrees.
42:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.24259779602591 degrees.
42:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:27 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:27 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:27 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:27 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0974105 (min) 0.26922 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.00916819 (min) 0.279382 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.47553 (min) -1.40018 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 7.98534 (min) 9.1344 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 24.4989 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.3477 (min) 16.9741 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 26.8562 (min) 30.8539 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000111966 (min) 0.000130011 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:27 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:27 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:27 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:27 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:27 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:27 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:27 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:27 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
42:27 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0]
42:27 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3]
42:27 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 340.   0.]
 [  0.   0.   0.   0.   0.]
 [ 13.   0.   0.  25.   0.]
 [  8.   0.  13.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:27 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:27 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:27 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0635359120488407
42:27 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:27 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:27 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:27 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:27 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:27 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:27 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:27 INFO    opendrift.models.chemicaldrift:1861: partitioning: [130, 0, 26, 344, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:27 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:27 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:27 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:27 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:27 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:27 INFO    opendrift.models.basemodel:2038: 2024-07-14 21:11:43.064707 - step 28 of 96 - 500 active elements (0 deactivated)
42:27 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:27 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:27 DEBUG   opendrift.models.basemodel:2057:               57.56739285992077 <- latitude  -> 57.727422558400455
42:27 DEBUG   opendrift.models.basemodel:2062:               10.534178381556108 <- longitude -> 10.756939340781177
42:27 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.03918381214587996
42:27 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:27 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 21:00:00 (before)
                2024-07-14 22:00:00 (after)
42:29 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:29 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:29 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:29 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:29 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:29 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:29 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 46x35x7) for time after (2024-07-14 22:00:00)
42:29 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 21:00:00) in space  (linearNDFast)
42:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:29 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 22:00:00) in space  (linearNDFast)
42:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:29 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 21:00:00, weight 0.80) and
                      after (2024-07-14 22:00:00, weight 0.20) in time
42:29 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.243071681998046 degrees.
42:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.243071681998046 degrees.
42:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:29 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:29 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:29 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:29 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0967706 (min) 0.256457 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0049963 (min) 0.270879 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.28447 (min) -0.958445 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 8.48746 (min) 9.66615 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 24.5115 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.3436 (min) 16.8271 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 26.5774 (min) 30.8608 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -5.34577e-05 (min) 0.000227331 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:29 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:29 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:29 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:29 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:29 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:29 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:29 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
42:29 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 3 0]
42:29 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 0 3]
42:29 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 344.   0.]
 [  0.   0.   0.   0.   0.]
 [ 14.   0.   0.  25.   0.]
 [  9.   0.  13.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:29 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:29 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:29 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.06826805983757614
42:29 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:29 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:29 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:29 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:29 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:29 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
42:29 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
42:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:29 INFO    opendrift.models.chemicaldrift:1861: partitioning: [128, 0, 25, 347, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:29 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:29 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:29 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:29 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:29 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:29 INFO    opendrift.models.basemodel:2038: 2024-07-14 21:41:43.064707 - step 29 of 96 - 500 active elements (0 deactivated)
42:29 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:29 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:29 DEBUG   opendrift.models.basemodel:2057:               57.56739285992077 <- latitude  -> 57.730660898540016
42:29 DEBUG   opendrift.models.basemodel:2062:               10.534178381556108 <- longitude -> 10.764330999665837
42:29 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   0.0
42:29 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 21:00:00 (before)
                2024-07-14 22:00:00 (after)
42:29 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 21:00:00) in space  (linearNDFast)
42:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:29 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 22:00:00) in space  (linearNDFast)
42:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:29 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 21:00:00, weight 0.30) and
                      after (2024-07-14 22:00:00, weight 0.70) in time
42:29 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.23568003177791 degrees.
42:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.23568003177791 degrees.
42:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:29 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:29 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:29 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:29 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0975682 (min) 0.247629 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.00406241 (min) 0.269359 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.3591 (min) -2.0968 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 8.74008 (min) 9.86588 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 24.9426 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.3387 (min) 16.8975 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 26.615 (min) 30.8683 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000109959 (min) 0.000390101 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:29 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:29 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:29 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:29 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:29 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:29 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:29 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:29 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
42:29 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0]
42:29 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3]
42:29 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 351.   0.]
 [  0.   0.   0.   0.   0.]
 [ 14.   0.   0.  26.   0.]
 [  9.   0.  14.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:29 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:29 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:29 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.07425585726159149
42:29 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:29 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:29 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:29 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:29 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:29 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:29 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:29 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
42:29 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:29 INFO    opendrift.models.chemicaldrift:1861: partitioning: [121, 0, 24, 355, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:29 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:29 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:29 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:29 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:29 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:29 INFO    opendrift.models.basemodel:2038: 2024-07-14 22:11:43.064707 - step 30 of 96 - 500 active elements (0 deactivated)
42:29 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:29 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:29 DEBUG   opendrift.models.basemodel:2057:               57.56739285992077 <- latitude  -> 57.73493293395588
42:29 DEBUG   opendrift.models.basemodel:2062:               10.534178381556108 <- longitude -> 10.771278389768216
42:29 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.019841820047881153
42:29 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 22:00:00 (before)
                2024-07-14 23:00:00 (after)
42:31 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:31 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:31 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:31 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:31 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:31 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:31 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 47x35x7) for time after (2024-07-14 23:00:00)
42:31 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 22:00:00) in space  (linearNDFast)
42:31 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:31 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 23:00:00) in space  (linearNDFast)
42:31 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:31 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 22:00:00, weight 0.80) and
                      after (2024-07-14 23:00:00, weight 0.20) in time
42:31 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:31 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.228732641785726 degrees.
42:31 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.228732641785726 degrees.
42:31 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:31 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:31 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:31 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:31 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:31 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:31 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:31 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:31 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:31 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:31 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:31 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:31 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:31 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:31 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:31 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:31 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:31 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:31 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:31 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:31 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0975165 (min) 0.243201 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.00509296 (min) 0.347052 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.58706 (min) -2.04338 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 9.18092 (min) 10.2596 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 25.3913 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.3356 (min) 16.7899 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 26.643 (min) 30.8754 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000110051 (min) 0.000552671 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:31 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:31 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:31 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:31 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:31 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:31 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:31 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
42:31 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0]
42:31 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3]
42:31 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 354.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  27.   0.]
 [  9.   0.  14.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:31 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:31 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:31 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:31 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:31 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.08036082351470772
42:31 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:31 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:31 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:31 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:31 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:31 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:31 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
42:31 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:31 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
42:31 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:31 INFO    opendrift.models.chemicaldrift:1861: partitioning: [119, 0, 23, 358, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:31 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:31 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:31 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:31 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:31 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:31 INFO    opendrift.models.basemodel:2038: 2024-07-14 22:41:43.064707 - step 31 of 96 - 500 active elements (0 deactivated)
42:31 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:31 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:31 DEBUG   opendrift.models.basemodel:2057:               57.56739285992077 <- latitude  -> 57.74054195770181
42:31 DEBUG   opendrift.models.basemodel:2062:               10.534178381556108 <- longitude -> 10.777683063684194
42:31 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.07966807179576696
42:31 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:31 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:31 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:31 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:31 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 22:00:00 (before)
                2024-07-14 23:00:00 (after)
42:31 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 22:00:00) in space  (linearNDFast)
42:31 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:31 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-14 23:00:00) in space  (linearNDFast)
42:31 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:31 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 22:00:00, weight 0.30) and
                      after (2024-07-14 23:00:00, weight 0.70) in time
42:31 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:31 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.22232796147525 degrees.
42:31 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.22232796147525 degrees.
42:31 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:31 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:31 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:31 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:31 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:31 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:31 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:31 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:31 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:31 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:31 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:31 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:31 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:31 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:31 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:31 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:31 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:31 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:31 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:31 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:31 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:31 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0997169 (min) 0.247373 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.00918844 (min) 0.301153 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.85051 (min) -1.60511 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 9.96774 (min) 10.7144 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 25.8846 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.1505 (min) 16.7743 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.1078 (min) 31.0701 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -8.4978e-05 (min) 0.000798522 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:31 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:31 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:31 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:31 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:31 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:31 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:31 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:31 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
42:31 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 3 0 0 0 3]
42:31 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 3 3 3 0]
42:31 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 360.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  28.   0.]
 [ 11.   0.  15.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:31 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:31 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:31 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:31 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:31 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0848958799736437
42:31 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:31 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:31 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:31 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:31 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:31 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2
42:31 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:31 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
42:31 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:31 INFO    opendrift.models.chemicaldrift:1861: partitioning: [115, 0, 25, 360, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:31 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:31 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:31 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:31 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:31 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:31 INFO    opendrift.models.basemodel:2038: 2024-07-14 23:11:43.064707 - step 32 of 96 - 500 active elements (0 deactivated)
42:31 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:31 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:31 DEBUG   opendrift.models.basemodel:2057:               57.56739285992077 <- latitude  -> 57.74516757768509
42:31 DEBUG   opendrift.models.basemodel:2062:               10.534178381556108 <- longitude -> 10.77974494288694
42:31 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.05354246940344032
42:31 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:31 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:31 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:31 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:31 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:31 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 23:00:00 (before)
                2024-07-15 00:00:00 (after)
42:33 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:33 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:33 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:33 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:33 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:33 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:33 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 48x35x7) for time after (2024-07-15 00:00:00)
42:33 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 23:00:00) in space  (linearNDFast)
42:33 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:33 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 00:00:00) in space  (linearNDFast)
42:33 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:33 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 23:00:00, weight 0.80) and
                      after (2024-07-15 00:00:00, weight 0.20) in time
42:33 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:33 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.220266090099734 degrees.
42:33 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.220266090099734 degrees.
42:33 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:33 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:33 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:33 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:33 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:33 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:33 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:33 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:33 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:33 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:33 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:34 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:34 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:34 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:34 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:34 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:34 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:34 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:34 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:34 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:34 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:34 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:34 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:34 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:34 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:34 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0965119 (min) 0.247992 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0147394 (min) 0.401189 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.43111 (min) -1.09271 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 10.0624 (min) 10.9243 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 26.1135 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 15.1244 (min) 16.7547 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.2187 (min) 31.221 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -8.26216e-05 (min) 0.000514053 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:34 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:34 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:34 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:34 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:34 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:34 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:34 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
42:34 DEBUG   opendrift.models.chemicaldrift:1452: old species: [3 0 3 0 0 3 0 0]
42:34 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 3 0 3 3]
42:34 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 365.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  28.   0.]
 [ 14.   0.  17.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:34 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:34 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:34 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:34 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:34 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.08740239900452045
42:34 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:34 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:34 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:34 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:34 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:34 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:34 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:34 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:34 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:34 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9
42:34 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:34 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements
42:34 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:34 INFO    opendrift.models.chemicaldrift:1861: partitioning: [113, 0, 29, 358, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:34 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:34 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:34 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:34 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:34 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:34 INFO    opendrift.models.basemodel:2038: 2024-07-14 23:41:43.064707 - step 33 of 96 - 500 active elements (0 deactivated)
42:34 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:34 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:34 DEBUG   opendrift.models.basemodel:2057:               57.56739285992077 <- latitude  -> 57.74916130282491
42:34 DEBUG   opendrift.models.basemodel:2062:               10.534178381556103 <- longitude -> 10.77889469287165
42:34 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.01632745720934814
42:34 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:34 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:34 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:34 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:34 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-14 23:00:00 (before)
                2024-07-15 00:00:00 (after)
42:34 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-14 23:00:00) in space  (linearNDFast)
42:34 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:34 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 00:00:00) in space  (linearNDFast)
42:34 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:34 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-14 23:00:00, weight 0.30) and
                      after (2024-07-15 00:00:00, weight 0.70) in time
42:34 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:34 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.22111632858861 degrees.
42:34 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.22111632858861 degrees.
42:34 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:34 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:34 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:34 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:34 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:34 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:34 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:34 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:34 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:34 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:34 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:34 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:34 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:34 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:34 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:34 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:34 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:34 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:34 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:34 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:34 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:34 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:34 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0996133 (min) 0.253747 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0225612 (min) 0.535767 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.38858 (min) -0.791685 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 10.0559 (min) 10.95 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 26.2074 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.7832 (min) 16.753 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.2341 (min) 32.475 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00020875 (min) 0.000459588 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:34 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:34 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:34 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:34 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:34 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:34 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:34 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
42:34 DEBUG   opendrift.models.chemicaldrift:1452: old species: [3 0 0 0 0]
42:34 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3]
42:34 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 369.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  33.   0.]
 [ 15.   0.  26.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:34 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:34 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:34 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:34 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:34 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.08715494216562272
42:34 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:34 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:34 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:34 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:34 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:34 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:34 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 18
42:34 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:34 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 18 elements
42:34 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:34 INFO    opendrift.models.chemicaldrift:1861: partitioning: [110, 0, 46, 344, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:34 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:34 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:34 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:34 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:34 INFO    opendrift.models.basemodel:2038: 2024-07-15 00:11:43.064707 - step 34 of 96 - 500 active elements (0 deactivated)
42:34 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:34 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:34 DEBUG   opendrift.models.basemodel:2057:               57.56739285992077 <- latitude  -> 57.75054881873112
42:34 DEBUG   opendrift.models.basemodel:2062:               10.534178381556098 <- longitude -> 10.778306256542725
42:34 DEBUG   opendrift.models.basemodel:2067:               -25.736622365008767   <- z ->   -0.05107026567985639
42:34 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:34 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:34 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:34 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:34 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:34 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 00:00:00 (before)
                2024-07-15 01:00:00 (after)
42:35 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:35 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:35 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:35 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:35 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:35 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:35 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 49x35x7) for time after (2024-07-15 01:00:00)
42:35 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 00:00:00) in space  (linearNDFast)
42:35 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:35 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 01:00:00) in space  (linearNDFast)
42:35 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:35 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 00:00:00, weight 0.80) and
                      after (2024-07-15 01:00:00, weight 0.20) in time
42:35 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:35 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.22170477490415 degrees.
42:35 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.22170477490415 degrees.
42:35 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:35 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:35 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:35 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:35 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:35 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:35 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:35 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:35 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:35 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:35 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:35 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:35 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:35 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:35 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:35 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:35 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:35 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:35 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:35 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:35 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:35 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:35 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:35 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:35 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:35 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:35 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:35 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:35 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:35 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.103956 (min) 0.27206 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.040914 (min) 0.664448 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.44073 (min) -0.58549 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 10.1116 (min) 10.9209 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 27.4199 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.1455 (min) 16.7893 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.4407 (min) 33.265 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00028856 (min) 0.00053908 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:35 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:35 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:35 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:36 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:36 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:36 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:36 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:36 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
42:36 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0]
42:36 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3]
42:36 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 375.   0.]
 [  0.   0.   0.   0.   0.]
 [ 15.   0.   0.  34.   0.]
 [ 15.   0.  44.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:36 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:36 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:36 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:36 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:36 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.08680210822623681
42:36 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:36 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:36 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:36 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:36 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 19
42:36 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:36 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 19 elements
42:36 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:36 INFO    opendrift.models.chemicaldrift:1861: partitioning: [104, 0, 65, 331, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:36 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:36 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:36 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:36 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:36 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:36 INFO    opendrift.models.basemodel:2038: 2024-07-15 00:41:43.064707 - step 35 of 96 - 500 active elements (0 deactivated)
42:36 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:36 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:36 DEBUG   opendrift.models.basemodel:2057:               57.567392859920766 <- latitude  -> 57.75811039062249
42:36 DEBUG   opendrift.models.basemodel:2062:               10.534178381556103 <- longitude -> 10.778010920976007
42:36 DEBUG   opendrift.models.basemodel:2067:               -27.419862747192383   <- z ->   -0.19614975777238897
42:36 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:36 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:36 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:36 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:36 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:36 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:36 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:36 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:36 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 00:00:00 (before)
                2024-07-15 01:00:00 (after)
42:36 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 00:00:00) in space  (linearNDFast)
42:36 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:36 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 01:00:00) in space  (linearNDFast)
42:36 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:36 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 00:00:00, weight 0.30) and
                      after (2024-07-15 01:00:00, weight 0.70) in time
42:36 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:36 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.222000095900874 degrees.
42:36 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.222000095900874 degrees.
42:36 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:36 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:36 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:36 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:36 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:36 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:36 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:36 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:36 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:36 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:36 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:36 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:36 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:36 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:36 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:36 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:36 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:36 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:36 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:36 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:36 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:36 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:36 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:36 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:36 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:36 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:36 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:36 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:36 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:36 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.110243 (min) 0.300723 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0774185 (min) 0.689689 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.5889 (min) -0.889042 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 10.2644 (min) 10.9802 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 32.8283 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.2977 (min) 16.7421 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.3628 (min) 33.1672 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000169078 (min) 0.000400594 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:36 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:36 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:36 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:36 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:36 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:36 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:36 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:36 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
42:36 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 0 2 0 0]
42:36 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3 0 3 3]
42:36 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 381.   0.]
 [  0.   0.   0.   0.   0.]
 [ 17.   0.   0.  34.   0.]
 [ 15.   0.  63.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:36 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:36 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:36 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:36 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:36 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.08886836506402587
42:36 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:36 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:36 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:36 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:36 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:36 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:36 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:36 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:36 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 17
42:36 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:36 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 17 elements
42:36 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:36 INFO    opendrift.models.chemicaldrift:1861: partitioning: [100, 0, 77, 323, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:36 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:36 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:36 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:36 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:36 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:36 INFO    opendrift.models.basemodel:2038: 2024-07-15 01:11:43.064707 - step 36 of 96 - 500 active elements (0 deactivated)
42:36 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:36 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:36 DEBUG   opendrift.models.basemodel:2057:               57.56739285992077 <- latitude  -> 57.76879877413381
42:36 DEBUG   opendrift.models.basemodel:2062:               10.534178381556103 <- longitude -> 10.782083704613896
42:36 DEBUG   opendrift.models.basemodel:2067:               -26.278612173511767   <- z ->   -0.136039165266586
42:36 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:36 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:36 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:36 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:36 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:36 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:36 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:36 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:36 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 01:00:00 (before)
                2024-07-15 02:00:00 (after)
42:38 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:38 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:38 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:38 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:38 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:38 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:38 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 51x35x7) for time after (2024-07-15 02:00:00)
42:38 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 01:00:00) in space  (linearNDFast)
42:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:38 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 02:00:00) in space  (linearNDFast)
42:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:38 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 01:00:00, weight 0.80) and
                      after (2024-07-15 02:00:00, weight 0.20) in time
42:38 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.217927321509464 degrees.
42:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.217927321509464 degrees.
42:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:38 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:38 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:38 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:38 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.119661 (min) 0.281885 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.102408 (min) 0.70351 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.73836 (min) -0.95157 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 10.1534 (min) 11.1326 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 41.9595 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.4155 (min) 16.7278 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.3367 (min) 33.0885 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -5.17305e-05 (min) 0.000327149 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:38 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:38 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:38 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:38 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:38 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:38 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:38 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
42:38 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 3 0]
42:38 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3]
42:38 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 383.   0.]
 [  0.   0.   0.   0.   0.]
 [ 17.   0.   0.  37.   0.]
 [ 16.   0.  80.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:38 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:38 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:38 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.09114993039318367
42:38 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:38 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:38 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:38 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:38 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:38 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12
42:38 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements
42:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:38 INFO    opendrift.models.chemicaldrift:1861: partitioning: [99, 0, 88, 313, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:38 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:38 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:38 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:38 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:38 INFO    opendrift.models.basemodel:2038: 2024-07-15 01:41:43.064707 - step 37 of 96 - 500 active elements (0 deactivated)
42:38 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:38 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:38 DEBUG   opendrift.models.basemodel:2057:               57.567392859920766 <- latitude  -> 57.779562881051746
42:38 DEBUG   opendrift.models.basemodel:2062:               10.534178381556098 <- longitude -> 10.788225331600213
42:38 DEBUG   opendrift.models.basemodel:2067:               -23.91508876830098   <- z ->   0.0
42:38 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:38 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 01:00:00 (before)
                2024-07-15 02:00:00 (after)
42:38 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 01:00:00) in space  (linearNDFast)
42:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:38 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 02:00:00) in space  (linearNDFast)
42:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:38 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 01:00:00, weight 0.30) and
                      after (2024-07-15 02:00:00, weight 0.70) in time
42:38 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.21178568474497 degrees.
42:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.21178568474497 degrees.
42:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:38 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:38 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:38 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:38 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.239416 (min) 0.314535 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.11468 (min) 0.576174 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.36249 (min) -0.813407 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 9.63086 (min) 10.5833 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 52.6474 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.7362 (min) 16.654 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.4744 (min) 33.1214 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -5.85509e-05 (min) 0.000592701 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:38 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:38 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:38 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:38 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:38 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:38 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:38 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:38 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 1
42:38 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0]
42:38 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3]
42:38 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 384.   0.]
 [  0.   0.   0.   0.   0.]
 [ 17.   0.   0.  38.   0.]
 [ 16.   0.  92.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:38 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:38 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:38 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.08220741527636519
42:38 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:38 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:38 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:38 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:38 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:38 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 17
42:38 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 17 elements
42:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:38 INFO    opendrift.models.chemicaldrift:1861: partitioning: [98, 0, 103, 299, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:38 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:38 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:38 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:38 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:38 INFO    opendrift.models.basemodel:2038: 2024-07-15 02:11:43.064707 - step 38 of 96 - 500 active elements (0 deactivated)
42:38 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:38 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:38 DEBUG   opendrift.models.basemodel:2057:               57.567392859920766 <- latitude  -> 57.78477617676827
42:38 DEBUG   opendrift.models.basemodel:2062:               10.534178381556103 <- longitude -> 10.787586125920146
42:38 DEBUG   opendrift.models.basemodel:2067:               -23.390596389770508   <- z ->   -0.04558655539205447
42:38 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:38 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 02:00:00 (before)
                2024-07-15 03:00:00 (after)
42:40 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:40 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:40 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:40 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:40 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:40 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:40 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 53x35x7) for time after (2024-07-15 03:00:00)
42:40 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 02:00:00) in space  (linearNDFast)
42:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:40 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 03:00:00) in space  (linearNDFast)
42:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:40 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 02:00:00, weight 0.80) and
                      after (2024-07-15 03:00:00, weight 0.20) in time
42:40 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.21242489672852 degrees.
42:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.21242489672852 degrees.
42:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:40 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:40 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:40 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:40 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.119977 (min) 0.318709 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0430615 (min) 0.63299 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.30153 (min) -0.856941 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 9.38027 (min) 10.1066 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 58.1152 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 14.1886 (min) 16.7046 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.4817 (min) 32.6956 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -6.79478e-05 (min) 0.000858851 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:40 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:40 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:40 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:40 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:40 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:40 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
42:40 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 3 2 0 0 0 0]
42:40 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 0 0 3 3 3 3]
42:40 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 390.   0.]
 [  0.   0.   0.   0.   0.]
 [ 19.   0.   0.  40.   0.]
 [ 17.   0. 109.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:40 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:40 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:40 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.07474656969476147
42:40 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:40 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:40 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:40 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:40 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:40 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 32
42:40 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 32 elements
42:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:40 INFO    opendrift.models.chemicaldrift:1861: partitioning: [95, 0, 132, 273, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:40 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:40 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:40 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:40 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:40 INFO    opendrift.models.basemodel:2038: 2024-07-15 02:41:43.064707 - step 39 of 96 - 500 active elements (0 deactivated)
42:40 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:40 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:40 DEBUG   opendrift.models.basemodel:2057:               57.56739285992077 <- latitude  -> 57.787718385667176
42:40 DEBUG   opendrift.models.basemodel:2062:               10.534178381556098 <- longitude -> 10.788091728769873
42:40 DEBUG   opendrift.models.basemodel:2067:               -28.462651028942595   <- z ->   0.0
42:40 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:40 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 02:00:00 (before)
                2024-07-15 03:00:00 (after)
42:40 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 02:00:00) in space  (linearNDFast)
42:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:40 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 03:00:00) in space  (linearNDFast)
42:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:40 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 02:00:00, weight 0.30) and
                      after (2024-07-15 03:00:00, weight 0.70) in time
42:40 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.2119192924991 degrees.
42:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.2119192924991 degrees.
42:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:40 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:40 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:40 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:40 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.123194 (min) 0.316159 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.199214 (min) 0.657132 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.59224 (min) -1.20741 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 9.42838 (min) 10.0499 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 61.2157 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5658 (min) 16.7249 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.5164 (min) 33.288 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -8.05105e-05 (min) 0.000870541 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:40 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:40 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:40 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:40 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:40 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:40 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:40 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:40 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
42:40 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0]
42:40 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3]
42:40 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 393.   0.]
 [  0.   0.   0.   0.   0.]
 [ 20.   0.   0.  41.   0.]
 [ 17.   0. 141.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:40 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:40 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:40 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.07428515299932438
42:40 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:40 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:40 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:40 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:40 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:40 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:40 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:40 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:40 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:40 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:40 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:40 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 52
42:40 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 52 elements
42:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:40 INFO    opendrift.models.chemicaldrift:1861: partitioning: [93, 0, 175, 232, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:40 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:40 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:40 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:40 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:40 INFO    opendrift.models.basemodel:2038: 2024-07-15 03:11:43.064707 - step 40 of 96 - 500 active elements (0 deactivated)
42:40 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:40 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:40 DEBUG   opendrift.models.basemodel:2057:               57.56901655473825 <- latitude  -> 57.79798405629507
42:40 DEBUG   opendrift.models.basemodel:2062:               10.534178381556098 <- longitude -> 10.787873566008303
42:40 DEBUG   opendrift.models.basemodel:2067:               -27.844929428778393   <- z ->   -0.14799108054618493
42:40 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:40 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 03:00:00 (before)
                2024-07-15 04:00:00 (after)
42:42 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:42 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:42 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:42 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:42 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:42 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:42 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 54x36x7) for time after (2024-07-15 04:00:00)
42:42 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 03:00:00) in space  (linearNDFast)
42:42 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:42 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 04:00:00) in space  (linearNDFast)
42:42 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:42 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 03:00:00, weight 0.80) and
                      after (2024-07-15 04:00:00, weight 0.20) in time
42:42 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:42 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.212137449573675 degrees.
42:42 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.212137449573675 degrees.
42:42 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:42 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:42 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:42 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:42 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:42 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:42 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:42 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:42 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:42 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:42 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:42 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:42 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:42 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:42 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:42 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:42 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:42 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:42 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:42 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:42 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.123627 (min) 0.33771 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.225779 (min) 0.706334 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.71173 (min) -1.43894 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 9.08706 (min) 9.94967 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 71.6933 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5506 (min) 16.7515 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.6769 (min) 33.3615 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -9.45513e-05 (min) 0.000826159 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:42 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:42 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:42 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:42 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:42 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:42 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:42 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
42:42 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 2 0]
42:42 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 0 3]
42:42 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 395.   0.]
 [  0.   0.   0.   0.   0.]
 [ 23.   0.   0.  49.   0.]
 [ 17.   0. 193.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:42 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:42 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:42 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:42 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:42 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.07328803171819047
42:42 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:42 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:42 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:42 DEBUG   opendrift.models.oceandrift:618: 34 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:42 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:42 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:42 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:42 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:42 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:42 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:42 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:42 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 86
42:42 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:42 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 86 elements
42:42 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:42 INFO    opendrift.models.chemicaldrift:1861: partitioning: [94, 0, 250, 156, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:42 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:42 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:42 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:42 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
42:42 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:42 INFO    opendrift.models.basemodel:2038: 2024-07-15 03:41:43.064707 - step 41 of 96 - 500 active elements (0 deactivated)
42:42 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:42 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:42 DEBUG   opendrift.models.basemodel:2057:               57.569383877750674 <- latitude  -> 57.80710664945793
42:42 DEBUG   opendrift.models.basemodel:2062:               10.534178381556098 <- longitude -> 10.796478933289249
42:42 DEBUG   opendrift.models.basemodel:2067:               -32.69910252624943   <- z ->   0.0
42:42 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:42 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:42 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:42 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:42 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 03:00:00 (before)
                2024-07-15 04:00:00 (after)
42:42 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 03:00:00) in space  (linearNDFast)
42:42 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:42 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 04:00:00) in space  (linearNDFast)
42:42 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:42 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 03:00:00, weight 0.30) and
                      after (2024-07-15 04:00:00, weight 0.70) in time
42:42 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:42 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.20353208783517 degrees.
42:42 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.20353208783517 degrees.
42:42 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:42 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:42 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:42 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:42 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:42 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:42 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:42 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:42 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:42 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:42 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:42 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:42 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:42 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:42 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:42 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:42 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:42 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:42 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:42 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:42 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.241078 (min) 0.425142 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.242432 (min) 0.66845 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.83043 (min) -1.26604 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 8.72135 (min) 9.77237 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 80.2158 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.7392 (min) 16.7402 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.6773 (min) 33.3316 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -9.88431e-05 (min) 0.000725505 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:42 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:42 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:42 DEBUG   opendrift.models.basemodel:755: Lifting 6 elements to seafloor.
42:42 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:42 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:42 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:42 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:42 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
42:42 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 3]
42:42 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0]
42:42 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 396.   0.]
 [  0.   0.   0.   0.   0.]
 [ 24.   0.   0.  57.   0.]
 [ 18.   0. 279.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:42 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:42 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:42 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:42 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:42 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0705500417607388
42:42 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:42 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:42 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:42 DEBUG   opendrift.models.oceandrift:618: 43 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:42 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:42 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 30 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 30 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:42 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:42 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:42 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 87
42:42 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:42 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 87 elements
42:42 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:42 INFO    opendrift.models.chemicaldrift:1861: partitioning: [95, 0, 333, 72, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:42 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:42 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:42 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:42 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
42:42 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:42 INFO    opendrift.models.basemodel:2038: 2024-07-15 04:11:43.064707 - step 42 of 96 - 500 active elements (0 deactivated)
42:42 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:42 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:42 DEBUG   opendrift.models.basemodel:2057:               57.56938387775067 <- latitude  -> 57.811740234475316
42:42 DEBUG   opendrift.models.basemodel:2062:               10.534178381556098 <- longitude -> 10.798150439694394
42:42 DEBUG   opendrift.models.basemodel:2067:               -32.113534106581305   <- z ->   0.0
42:42 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:42 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:42 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:42 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:42 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:42 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 04:00:00 (before)
                2024-07-15 05:00:00 (after)
42:44 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:44 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:44 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:44 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:44 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:44 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:44 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 56x36x7) for time after (2024-07-15 05:00:00)
42:44 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 04:00:00) in space  (linearNDFast)
42:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:44 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 05:00:00) in space  (linearNDFast)
42:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:44 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 04:00:00, weight 0.80) and
                      after (2024-07-15 05:00:00, weight 0.20) in time
42:44 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.201860574094084 degrees.
42:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465832700960114 and -59.201860574094084 degrees.
42:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:44 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:44 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:44 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:44 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.27335 (min) 0.372239 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.254155 (min) 0.724788 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.4946 (min) -0.728276 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 8.26912 (min) 9.37101 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 84.5653 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.7948 (min) 16.6056 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.3995 (min) 33.3268 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00013537 (min) 0.000844192 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:44 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 4 elements to seafloor.
42:44 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:44 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:44 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:44 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:44 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
42:44 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 2]
42:44 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 0]
42:44 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 398.   0.]
 [  0.   0.   0.   0.   0.]
 [ 26.   0.   0.  60.   0.]
 [ 18.   0. 366.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:44 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:44 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:44 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.06398966765113721
42:44 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:44 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:44 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:44 DEBUG   opendrift.models.oceandrift:618: 51 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 47 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 39 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 32 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:44 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 24
42:44 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 24 elements
42:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:44 INFO    opendrift.models.chemicaldrift:1861: partitioning: [95, 0, 342, 63, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:44 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:44 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:44 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:44 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:44 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:44 INFO    opendrift.models.basemodel:2038: 2024-07-15 04:41:43.064707 - step 43 of 96 - 500 active elements (0 deactivated)
42:44 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:44 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:44 DEBUG   opendrift.models.basemodel:2057:               57.56938387775067 <- latitude  -> 57.816271247057685
42:44 DEBUG   opendrift.models.basemodel:2062:               10.531105420610665 <- longitude -> 10.806104493229205
42:44 DEBUG   opendrift.models.basemodel:2067:               -33.90603290787068   <- z ->   0.0
42:44 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:44 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 04:00:00 (before)
                2024-07-15 05:00:00 (after)
42:44 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 04:00:00) in space  (linearNDFast)
42:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:44 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 05:00:00) in space  (linearNDFast)
42:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:44 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 04:00:00, weight 0.30) and
                      after (2024-07-15 05:00:00, weight 0.70) in time
42:44 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46890566021156 and -59.193906509322815 degrees.
42:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46890566021156 and -59.193906509322815 degrees.
42:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:44 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:44 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:44 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:44 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.296801 (min) 0.333811 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.26656 (min) 0.659989 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.748334 (min) 0.602702 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 6.66107 (min) 8.91057 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 88.6514 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6321 (min) 16.5794 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.765 (min) 33.4341 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000108082 (min) 0.000906546 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:44 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:44 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:44 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:44 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:44 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:44 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:44 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:44 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
42:44 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2 0 2 2]
42:44 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0 3 0 0]
42:44 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 400.   0.]
 [  0.   0.   0.   0.   0.]
 [ 31.   0.   0.  73.   0.]
 [ 18.   0. 390.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:44 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:44 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:44 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05737887154511468
42:44 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:44 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:44 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:44 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 30 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 36 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 32 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 20
42:44 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 20 elements
42:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:44 INFO    opendrift.models.chemicaldrift:1861: partitioning: [98, 0, 344, 58, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:44 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:44 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:44 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:44 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:44 INFO    opendrift.models.basemodel:2038: 2024-07-15 05:11:43.064707 - step 44 of 96 - 500 active elements (0 deactivated)
42:44 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:44 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:44 DEBUG   opendrift.models.basemodel:2057:               57.570888662794914 <- latitude  -> 57.82076612473752
42:44 DEBUG   opendrift.models.basemodel:2062:               10.528138016720563 <- longitude -> 10.816146869053446
42:44 DEBUG   opendrift.models.basemodel:2067:               -29.046336898465626   <- z ->   0.0
42:44 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:44 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 05:00:00 (before)
                2024-07-15 06:00:00 (after)
42:46 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:46 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:46 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:46 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:46 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:46 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:46 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 56x38x7) for time after (2024-07-15 06:00:00)
42:46 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 05:00:00) in space  (linearNDFast)
42:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
/root/project/opendrift/readers/interpolation/interpolators.py:17: RuntimeWarning: overflow encountered in cast
  data[mask] = np.finfo(np.float64).min
42:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
42:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
42:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
42:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
42:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
42:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
42:46 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 06:00:00) in space  (linearNDFast)
42:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
42:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
42:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
42:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
42:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
42:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
42:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
42:46 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 05:00:00, weight 0.80) and
                      after (2024-07-15 06:00:00, weight 0.20) in time
42:46 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47187305756526 and -59.18386413405699 degrees.
42:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47187305756526 and -59.18386413405699 degrees.
42:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:46 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:46 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:46 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:46 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.282674 (min) 0.346674 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.282706 (min) 0.647062 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.0624449 (min) 1.53898 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 5.71902 (min) 8.59066 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 92.5656 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5407 (min) 16.5225 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.5076 (min) 33.3814 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000126317 (min) 0.00120966 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:46 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:46 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:46 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:46 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:46 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:46 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:46 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 10
42:46 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 2 2 2 2 0 2 0]
42:46 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 0 0 0 0 3 0 3]
42:46 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 404.   0.]
 [  0.   0.   0.   0.   0.]
 [ 37.   0.   0.  86.   0.]
 [ 18.   0. 410.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:46 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:46 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:46 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05406753879276273
42:46 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:46 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:46 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:46 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:46 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 17
42:46 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 17 elements
42:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:46 INFO    opendrift.models.chemicaldrift:1861: partitioning: [100, 0, 340, 60, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:46 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:46 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:46 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:46 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:46 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:46 INFO    opendrift.models.basemodel:2038: 2024-07-15 05:41:43.064707 - step 45 of 96 - 500 active elements (0 deactivated)
42:46 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:46 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:46 DEBUG   opendrift.models.basemodel:2057:               57.57210291838753 <- latitude  -> 57.824401556707286
42:46 DEBUG   opendrift.models.basemodel:2062:               10.531365103619873 <- longitude -> 10.820871831538746
42:46 DEBUG   opendrift.models.basemodel:2067:               -36.87383563756566   <- z ->   0.0
42:46 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:46 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 05:00:00 (before)
                2024-07-15 06:00:00 (after)
42:46 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 05:00:00) in space  (linearNDFast)
42:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:46 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 06:00:00) in space  (linearNDFast)
42:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:46 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 05:00:00, weight 0.30) and
                      after (2024-07-15 06:00:00, weight 0.70) in time
42:46 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46864596870635 and -59.17913917518129 degrees.
42:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46864596870635 and -59.17913917518129 degrees.
42:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:46 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:46 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:46 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:46 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.272385 (min) 0.385248 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.299638 (min) 0.567288 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.618366 (min) 1.8718 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 6.20872 (min) 8.07782 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 95.6395 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5546 (min) 16.7023 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.8184 (min) 33.4541 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000181552 (min) 0.000961871 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:46 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:46 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:46 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:46 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:46 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:46 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:46 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
42:46 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 2 2 2 0]
42:46 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 0 0 0 3]
42:46 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 405.   0.]
 [  0.   0.   0.   0.   0.]
 [ 44.   0.   0. 101.   0.]
 [ 18.   0. 427.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:46 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:46 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:46 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04921724423815226
42:46 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:46 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:46 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:46 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:46 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:46 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
42:46 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9
42:46 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements
42:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:46 INFO    opendrift.models.chemicaldrift:1861: partitioning: [106, 0, 334, 60, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:46 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:46 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:46 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:46 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:46 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:46 INFO    opendrift.models.basemodel:2038: 2024-07-15 06:11:43.064707 - step 46 of 96 - 500 active elements (0 deactivated)
42:46 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:46 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:46 DEBUG   opendrift.models.basemodel:2057:               57.57697071951652 <- latitude  -> 57.82735365643795
42:46 DEBUG   opendrift.models.basemodel:2062:               10.531504458364605 <- longitude -> 10.820556200798686
42:46 DEBUG   opendrift.models.basemodel:2067:               -38.37421723169488   <- z ->   0.0
42:46 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:46 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 06:00:00 (before)
                2024-07-15 07:00:00 (after)
42:55 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:55 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:55 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:55 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:55 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:55 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:55 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 55x40x7) for time after (2024-07-15 07:00:00)
42:55 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 06:00:00) in space  (linearNDFast)
42:55 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:55 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 07:00:00) in space  (linearNDFast)
42:55 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:55 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 06:00:00, weight 0.80) and
                      after (2024-07-15 07:00:00, weight 0.20) in time
42:55 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:55 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468506632320874 and -59.17945480839932 degrees.
42:55 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468506632320874 and -59.17945480839932 degrees.
42:55 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:55 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:55 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:55 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:55 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:55 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:55 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:55 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:55 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:55 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:55 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:55 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:55 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:55 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:55 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:55 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:55 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:55 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:55 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:55 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:55 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:55 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:55 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.323282 (min) 0.355152 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.317685 (min) 0.548874 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.20454 (min) 2.38125 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 5.84565 (min) 7.94846 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 98.0775 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5041 (min) 16.5523 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.9521 (min) 33.509 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000295294 (min) 0.000963057 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:55 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 4 elements to seafloor.
42:55 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:55 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:55 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:55 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:55 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 11
42:55 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 2 2 2 2 2 0 0 2]
42:55 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 0 0 0 0 0 3 3 0]
42:55 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 409.   0.]
 [  0.   0.   0.   0.   0.]
 [ 51.   0.   0. 109.   0.]
 [ 18.   0. 436.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:55 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:55 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:55 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:55 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:55 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.049746530451807824
42:55 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:55 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:55 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:55 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:55 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:55 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:55 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:55 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:55 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7
42:55 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:55 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 7 elements
42:55 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:55 INFO    opendrift.models.chemicaldrift:1861: partitioning: [109, 0, 330, 61, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:55 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:55 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:55 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:55 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:55 INFO    opendrift.models.basemodel:2038: 2024-07-15 06:41:43.064707 - step 47 of 96 - 500 active elements (0 deactivated)
42:55 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:55 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:55 DEBUG   opendrift.models.basemodel:2057:               57.581823109215236 <- latitude  -> 57.83120875574189
42:55 DEBUG   opendrift.models.basemodel:2062:               10.534608774751256 <- longitude -> 10.820809054336475
42:55 DEBUG   opendrift.models.basemodel:2067:               -33.61012401179958   <- z ->   0.0
42:55 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:55 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:55 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:55 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:55 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 06:00:00 (before)
                2024-07-15 07:00:00 (after)
42:55 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 06:00:00) in space  (linearNDFast)
42:55 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:55 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 07:00:00) in space  (linearNDFast)
42:55 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:55 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 06:00:00, weight 0.30) and
                      after (2024-07-15 07:00:00, weight 0.70) in time
42:55 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:55 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46540231071787 and -59.179201946800724 degrees.
42:55 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46540231071787 and -59.179201946800724 degrees.
42:55 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:55 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:55 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:55 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:55 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:55 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:55 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:55 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:55 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:55 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:55 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:55 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:55 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:55 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:55 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:55 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:55 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:55 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:55 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:55 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:55 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:55 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:55 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.345671 (min) 0.35695 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.325455 (min) 0.525931 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.55035 (min) 2.63247 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 6.12069 (min) 7.74904 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 100.905 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.4927 (min) 16.588 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.0999 (min) 33.5173 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000167523 (min) 0.000912494 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:55 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:55 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:55 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:55 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:55 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:55 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:55 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:55 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
42:55 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 2 2]
42:55 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 0 0]
42:55 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 411.   0.]
 [  0.   0.   0.   0.   0.]
 [ 54.   0.   0. 113.   0.]
 [ 18.   0. 443.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:55 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:55 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:55 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:55 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:55 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04825933221988427
42:55 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:55 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:55 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:55 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:55 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:55 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:55 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:55 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:55 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:55 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:55 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:55 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:55 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:55 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:55 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:55 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 11
42:55 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:55 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 11 elements
42:55 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:55 INFO    opendrift.models.chemicaldrift:1861: partitioning: [110, 0, 326, 64, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:55 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:55 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:55 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:55 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:55 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:55 INFO    opendrift.models.basemodel:2038: 2024-07-15 07:11:43.064707 - step 48 of 96 - 500 active elements (0 deactivated)
42:55 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:55 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:55 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.83534896242203
42:55 DEBUG   opendrift.models.basemodel:2062:               10.534238561751463 <- longitude -> 10.82664159518219
42:55 DEBUG   opendrift.models.basemodel:2067:               -33.84710092456519   <- z ->   -0.08577332801155468
42:55 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:55 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:55 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:55 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:55 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:55 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 07:00:00 (before)
                2024-07-15 08:00:00 (after)
42:57 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:57 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:57 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:57 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:57 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:57 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:57 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 54x41x7) for time after (2024-07-15 08:00:00)
42:57 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 07:00:00) in space  (linearNDFast)
42:57 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:57 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 08:00:00) in space  (linearNDFast)
42:57 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:57 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 07:00:00, weight 0.80) and
                      after (2024-07-15 08:00:00, weight 0.20) in time
42:57 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:57 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465772515374155 and -59.173369400635885 degrees.
42:57 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.465772515374155 and -59.173369400635885 degrees.
42:57 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:57 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:57 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:57 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:57 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:57 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:57 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:57 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:57 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:57 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:57 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:57 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:57 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:57 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:57 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:57 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:57 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:57 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:57 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:57 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:57 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.358497 (min) 0.35769 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.322336 (min) 0.474867 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.62181 (min) 2.77399 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 6.18139 (min) 7.57565 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7876 (min) 103.46 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.4223 (min) 16.5469 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.9914 (min) 33.5245 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000262091 (min) 0.000899791 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:57 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:57 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:57 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:57 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:57 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:57 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
42:57 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 2]
42:57 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 0]
42:57 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 413.   0.]
 [  0.   0.   0.   0.   0.]
 [ 56.   0.   0. 125.   0.]
 [ 18.   0. 454.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:57 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:57 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:57 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:57 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:57 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04689445375479986
42:57 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:57 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:57 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:57 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:57 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
42:57 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:57 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
42:57 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:57 INFO    opendrift.models.chemicaldrift:1861: partitioning: [110, 0, 322, 68, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:57 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:57 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:57 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:57 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:57 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:57 INFO    opendrift.models.basemodel:2038: 2024-07-15 07:41:43.064707 - step 49 of 96 - 500 active elements (0 deactivated)
42:57 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:57 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:57 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.839179580310386
42:57 DEBUG   opendrift.models.basemodel:2062:               10.532006593319066 <- longitude -> 10.825407929286897
42:57 DEBUG   opendrift.models.basemodel:2067:               -33.01287063779125   <- z ->   0.0
42:57 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:57 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:57 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:57 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:57 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 07:00:00 (before)
                2024-07-15 08:00:00 (after)
42:57 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 07:00:00) in space  (linearNDFast)
42:57 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:57 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 08:00:00) in space  (linearNDFast)
42:57 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:57 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 07:00:00, weight 0.30) and
                      after (2024-07-15 08:00:00, weight 0.70) in time
42:57 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:57 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468004475657956 and -59.17460305597896 degrees.
42:57 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468004475657956 and -59.17460305597896 degrees.
42:57 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:57 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:57 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:57 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:57 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:57 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:57 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:57 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:57 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:57 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:57 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:57 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:57 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:57 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:57 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:57 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:57 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:57 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:57 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:57 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:57 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.332762 (min) 0.420692 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.31404 (min) 0.498322 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.73805 (min) 2.76956 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 5.78145 (min) 7.28571 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.5698 (min) 105.303 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.3786 (min) 16.5724 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.7445 (min) 33.5267 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000113866 (min) 0.000831523 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:57 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:57 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:57 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:57 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:57 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:57 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:57 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
42:57 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 0]
42:57 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 3]
42:57 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 414.   0.]
 [  0.   0.   0.   0.   0.]
 [ 59.   0.   0. 132.   0.]
 [ 18.   0. 459.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:57 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:57 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:57 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:57 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:57 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04390457270361889
42:57 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:57 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:57 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:57 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:57 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:57 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:57 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
42:57 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:57 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
42:57 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:57 INFO    opendrift.models.chemicaldrift:1861: partitioning: [112, 0, 311, 77, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:57 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:57 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:57 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:57 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:57 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:57 INFO    opendrift.models.basemodel:2038: 2024-07-15 08:11:43.064707 - step 50 of 96 - 500 active elements (0 deactivated)
42:57 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:57 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:57 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.842228017068706
42:57 DEBUG   opendrift.models.basemodel:2062:               10.534608774751261 <- longitude -> 10.824362196658061
42:57 DEBUG   opendrift.models.basemodel:2067:               -33.87575656055216   <- z ->   -0.03218131769123689
42:57 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:57 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:57 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:57 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:57 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:57 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 08:00:00 (before)
                2024-07-15 09:00:00 (after)
42:59 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
42:59 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
42:59 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
42:59 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
42:59 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
42:59 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
42:59 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 55x43x7) for time after (2024-07-15 09:00:00)
42:59 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 08:00:00) in space  (linearNDFast)
42:59 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:59 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 09:00:00) in space  (linearNDFast)
42:59 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:59 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 08:00:00, weight 0.80) and
                      after (2024-07-15 09:00:00, weight 0.20) in time
42:59 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:59 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46540231071787 and -59.175648800263374 degrees.
42:59 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46540231071787 and -59.175648800263374 degrees.
42:59 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:59 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:59 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:59 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:59 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:59 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:59 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:59 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:59 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:59 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:59 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:59 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:59 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:59 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:59 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:59 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:59 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:59 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:59 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:59 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:59 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:59 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:59 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.35766 (min) 0.37551 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.347768 (min) 0.338613 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.49722 (min) 2.58322 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 5.56467 (min) 6.99377 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7654 (min) 106.266 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.4488 (min) 16.491 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.7564 (min) 33.5319 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000104427 (min) 0.00088766 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:59 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:59 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:59 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:59 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:59 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:59 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
42:59 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 2 2 0]
42:59 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0 0 3]
42:59 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 416.   0.]
 [  0.   0.   0.   0.   0.]
 [ 63.   0.   0. 145.   0.]
 [ 18.   0. 464.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:59 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:59 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:59 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:59 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:59 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.040171456173615984
42:59 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:59 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:59 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:59 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:59 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
42:59 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:59 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
42:59 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:59 INFO    opendrift.models.chemicaldrift:1861: partitioning: [114, 0, 304, 82, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:59 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:59 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:59 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:59 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:59 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:59 INFO    opendrift.models.basemodel:2038: 2024-07-15 08:41:43.064707 - step 51 of 96 - 500 active elements (0 deactivated)
42:59 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:59 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:59 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.84481506689036
42:59 DEBUG   opendrift.models.basemodel:2062:               10.534608774751266 <- longitude -> 10.823670322518126
42:59 DEBUG   opendrift.models.basemodel:2067:               -34.1692139496834   <- z ->   -0.11622662035176656
42:59 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:59 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:59 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:59 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:59 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 08:00:00 (before)
                2024-07-15 09:00:00 (after)
42:59 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 08:00:00) in space  (linearNDFast)
42:59 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:59 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 09:00:00) in space  (linearNDFast)
42:59 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
42:59 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 08:00:00, weight 0.30) and
                      after (2024-07-15 09:00:00, weight 0.70) in time
42:59 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
42:59 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46540231071787 and -59.176340684220975 degrees.
42:59 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46540231071787 and -59.176340684220975 degrees.
42:59 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:59 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
42:59 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
42:59 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:59 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
42:59 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:59 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:59 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:59 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
42:59 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
42:59 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:59 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
42:59 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
42:59 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
42:59 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
42:59 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
42:59 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
42:59 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
42:59 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
42:59 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
42:59 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
42:59 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
42:59 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.382788 (min) 0.332654 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.366533 (min) 0.292153 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.17374 (min) 2.15797 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 5.44427 (min) 6.59991 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 106.59 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.329 (min) 16.5499 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.3166 (min) 33.5304 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00017005 (min) 0.000807734 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
42:59 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
42:59 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
42:59 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:59 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
42:59 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
42:59 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
42:59 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
42:59 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
42:59 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0]
42:59 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3]
42:59 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 419.   0.]
 [  0.   0.   0.   0.   0.]
 [ 63.   0.   0. 154.   0.]
 [ 18.   0. 470.   0.   0.]
 [  0.   0.   0.   0.   0.]]
42:59 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
42:59 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:59 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
42:59 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
42:59 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.034744175391791386
42:59 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
42:59 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
42:59 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
42:59 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
42:59 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
42:59 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
42:59 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
42:59 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
42:59 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
42:59 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
42:59 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
42:59 INFO    opendrift.models.chemicaldrift:1861: partitioning: [111, 0, 296, 93, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
42:59 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
42:59 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
42:59 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
42:59 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
42:59 DEBUG   opendrift.models.basemodel:2037: ======================================================================
42:59 INFO    opendrift.models.basemodel:2038: 2024-07-15 09:11:43.064707 - step 52 of 96 - 500 active elements (0 deactivated)
42:59 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
42:59 DEBUG   opendrift.models.basemodel:2046: ======================================================================
42:59 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.846577330932135
42:59 DEBUG   opendrift.models.basemodel:2062:               10.53460877475127 <- longitude -> 10.823389993266801
42:59 DEBUG   opendrift.models.basemodel:2067:               -37.46970315501814   <- z ->   0.0
42:59 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
42:59 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
42:59 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
42:59 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
42:59 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
42:59 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 09:00:00 (before)
                2024-07-15 10:00:00 (after)
43:01 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:01 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:01 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:01 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:01 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:01 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:01 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 55x46x7) for time after (2024-07-15 10:00:00)
43:01 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 09:00:00) in space  (linearNDFast)
43:01 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:01 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 10:00:00) in space  (linearNDFast)
43:01 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:01 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 09:00:00, weight 0.80) and
                      after (2024-07-15 10:00:00, weight 0.20) in time
43:01 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:01 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46540231071787 and -59.17662100101566 degrees.
43:01 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46540231071787 and -59.17662100101566 degrees.
43:01 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:01 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:01 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:01 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:01 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:01 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:01 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:01 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:01 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:01 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:01 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:01 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:01 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:01 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:01 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:01 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:01 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:01 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:01 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:01 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:01 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:01 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:01 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.450087 (min) 0.312279 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.37551 (min) 0.258597 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.719447 (min) 1.76027 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.94373 (min) 6.39374 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7301 (min) 106.192 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.4483 (min) 16.4762 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.3717 (min) 33.54 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000407449 (min) 0.000782872 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:01 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:01 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:01 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:01 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:01 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:01 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:01 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
43:01 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 2 2]
43:01 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 0 0]
43:01 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 420.   0.]
 [  0.   0.   0.   0.   0.]
 [ 67.   0.   0. 165.   0.]
 [ 18.   0. 473.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:01 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:01 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:01 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:01 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:01 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03159336195825132
43:01 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:01 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:01 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:01 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:01 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:01 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:01 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:01 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:01 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:01 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:01 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:01 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:01 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:01 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:01 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:01 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
43:01 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:01 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
43:01 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:01 INFO    opendrift.models.chemicaldrift:1861: partitioning: [114, 0, 288, 98, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:01 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:01 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:01 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:01 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:01 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:01 INFO    opendrift.models.basemodel:2038: 2024-07-15 09:41:43.064707 - step 53 of 96 - 500 active elements (0 deactivated)
43:01 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:01 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:01 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.84766493640392
43:01 DEBUG   opendrift.models.basemodel:2062:               10.534608774751266 <- longitude -> 10.824076315381394
43:01 DEBUG   opendrift.models.basemodel:2067:               -35.41145960980196   <- z ->   0.0
43:01 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:01 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:01 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:01 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:01 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 09:00:00 (before)
                2024-07-15 10:00:00 (after)
43:01 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 09:00:00) in space  (linearNDFast)
43:01 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:01 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 10:00:00) in space  (linearNDFast)
43:01 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:01 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 09:00:00, weight 0.30) and
                      after (2024-07-15 10:00:00, weight 0.70) in time
43:01 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:01 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46540231071787 and -59.175934689209825 degrees.
43:01 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46540231071787 and -59.175934689209825 degrees.
43:01 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:01 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:01 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:01 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:01 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:01 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:01 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:01 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:01 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:01 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:01 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:01 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:01 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:01 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:01 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:01 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:01 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:01 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:01 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:01 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:01 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:01 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:01 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.524244 (min) 0.339189 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.383949 (min) 0.261728 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.442628 (min) 1.39355 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.22343 (min) 6.36703 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 105.076 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.4385 (min) 16.4994 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.2147 (min) 33.546 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000462483 (min) 0.000707689 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:01 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:01 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:01 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:01 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:01 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:01 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:01 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:01 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
43:01 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 2 2 0 2]
43:01 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 0 0 3 0]
43:01 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 423.   0.]
 [  0.   0.   0.   0.   0.]
 [ 71.   0.   0. 173.   0.]
 [ 18.   0. 477.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:01 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:01 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:01 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:01 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:01 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.030365320501938763
43:01 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:01 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:01 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:01 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:01 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:01 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:01 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:01 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:01 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:01 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:01 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:01 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:01 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:01 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:01 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:01 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:01 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:01 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
43:01 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:01 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
43:01 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:01 INFO    opendrift.models.chemicaldrift:1861: partitioning: [115, 0, 280, 105, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:01 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:01 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:01 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:01 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:01 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:01 INFO    opendrift.models.basemodel:2038: 2024-07-15 10:11:43.064707 - step 54 of 96 - 500 active elements (0 deactivated)
43:01 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:01 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:01 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.848129789929345
43:01 DEBUG   opendrift.models.basemodel:2062:               10.534608774751266 <- longitude -> 10.828193319153021
43:01 DEBUG   opendrift.models.basemodel:2067:               -34.87706217641503   <- z ->   0.0
43:01 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:01 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:01 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:01 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:01 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:01 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 10:00:00 (before)
                2024-07-15 11:00:00 (after)
43:03 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:03 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:03 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:03 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:03 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:03 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:03 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 55x48x7) for time after (2024-07-15 11:00:00)
43:03 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 10:00:00) in space  (linearNDFast)
43:03 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:03 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 11:00:00) in space  (linearNDFast)
43:03 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:03 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 10:00:00, weight 0.80) and
                      after (2024-07-15 11:00:00, weight 0.20) in time
43:03 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:03 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46540231071787 and -59.171817690402975 degrees.
43:03 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46540231071787 and -59.171817690402975 degrees.
43:03 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:03 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:03 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:03 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:03 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:03 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:03 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:03 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:03 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:03 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:03 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:03 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:03 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:03 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:03 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:03 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:03 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:03 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:03 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:03 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:03 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:03 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:03 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.55631 (min) 0.322967 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.397811 (min) 0.272786 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.0286665 (min) 1.15267 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.53493 (min) 6.26021 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 104.104 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.3564 (min) 16.5819 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.2406 (min) 33.5447 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000457574 (min) 0.000709316 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:03 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:03 DEBUG   opendrift.models.basemodel:755: Lifting 4 elements to seafloor.
43:03 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:03 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:03 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:03 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:03 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
43:03 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 2 0 2 0]
43:03 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 0 3 0 3]
43:03 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 428.   0.]
 [  0.   0.   0.   0.   0.]
 [ 74.   0.   0. 180.   0.]
 [ 18.   0. 480.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:03 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:03 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:03 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:03 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:03 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.028872417050422976
43:03 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:03 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:03 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:03 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:03 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:03 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:03 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:03 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:03 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:03 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:03 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:03 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:03 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:03 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:03 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:03 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:03 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:03 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:03 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
43:03 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:03 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
43:03 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:03 INFO    opendrift.models.chemicaldrift:1861: partitioning: [113, 0, 275, 112, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:03 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:03 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:03 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:03 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:03 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:03 INFO    opendrift.models.basemodel:2038: 2024-07-15 10:41:43.064707 - step 55 of 96 - 500 active elements (0 deactivated)
43:03 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:03 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:03 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.848269206897236
43:03 DEBUG   opendrift.models.basemodel:2062:               10.534608774751263 <- longitude -> 10.832567759060282
43:03 DEBUG   opendrift.models.basemodel:2067:               -33.276442291387106   <- z ->   0.0
43:03 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:03 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:03 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:03 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:03 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 10:00:00 (before)
                2024-07-15 11:00:00 (after)
43:03 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 10:00:00) in space  (linearNDFast)
43:03 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:03 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 11:00:00) in space  (linearNDFast)
43:03 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:03 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 10:00:00, weight 0.30) and
                      after (2024-07-15 11:00:00, weight 0.70) in time
43:03 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:03 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46540231071787 and -59.167443248740206 degrees.
43:03 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46540231071787 and -59.167443248740206 degrees.
43:03 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:03 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:03 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:03 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:03 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:03 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:03 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:03 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:03 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:03 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:03 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:03 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:03 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:03 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:03 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:03 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:03 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:03 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:03 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:03 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:03 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:03 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:03 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.516645 (min) 0.330264 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.39477 (min) 0.283088 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.649912 (min) 1.11012 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.24142 (min) 6.51205 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 105.724 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.2978 (min) 16.5386 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.2358 (min) 33.5316 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000912094 (min) 0.000622007 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:03 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:03 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:03 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
43:03 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:03 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:03 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:03 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:03 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
43:03 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 2 2 0]
43:03 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 0 0 3]
43:03 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 431.   0.]
 [  0.   0.   0.   0.   0.]
 [ 77.   0.   0. 187.   0.]
 [ 18.   0. 485.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:03 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:03 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:03 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:03 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:03 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.030651474687340474
43:03 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:03 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:03 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:03 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:03 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:03 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:03 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:03 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:03 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:03 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
43:03 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:03 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:03 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
43:03 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:03 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
43:03 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:03 INFO    opendrift.models.chemicaldrift:1861: partitioning: [113, 0, 271, 116, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:03 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:03 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:03 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:03 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:03 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:03 INFO    opendrift.models.basemodel:2038: 2024-07-15 11:11:43.064707 - step 56 of 96 - 500 active elements (0 deactivated)
43:03 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:03 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:03 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.847426057183014
43:03 DEBUG   opendrift.models.basemodel:2062:               10.532655679815827 <- longitude -> 10.835780207274931
43:03 DEBUG   opendrift.models.basemodel:2067:               -34.3547817229575   <- z ->   0.0
43:03 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:03 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:03 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:03 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:03 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:03 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 11:00:00 (before)
                2024-07-15 12:00:00 (after)
43:05 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:05 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:05 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:05 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:05 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:05 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:05 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 56x50x7) for time after (2024-07-15 12:00:00)
43:05 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 11:00:00) in space  (linearNDFast)
43:05 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:05 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 12:00:00) in space  (linearNDFast)
43:05 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:05 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 11:00:00, weight 0.80) and
                      after (2024-07-15 12:00:00, weight 0.20) in time
43:05 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:05 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.467355323764 and -59.164230805241914 degrees.
43:05 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.467355323764 and -59.164230805241914 degrees.
43:05 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:05 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:05 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:05 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:05 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:05 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:05 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:05 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:05 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:05 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:05 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:05 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:05 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.51573 (min) 0.279796 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.37736 (min) 0.303324 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.806829 (min) 1.18619 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.95037 (min) 6.33263 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 106.097 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.2614 (min) 16.7627 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.2358 (min) 33.5396 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00106391 (min) 0.000654915 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:05 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:05 DEBUG   opendrift.models.basemodel:755: Lifting 4 elements to seafloor.
43:05 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:05 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:05 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:05 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:05 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
43:05 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 0 2]
43:05 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 3 0]
43:05 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 433.   0.]
 [  0.   0.   0.   0.   0.]
 [ 80.   0.   0. 192.   0.]
 [ 18.   0. 489.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:05 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:05 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:05 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.02898386124241443
43:05 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:05 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:05 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:05 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:05 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:05 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:05 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:05 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:05 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:05 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:05 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:05 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
43:05 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
43:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:05 INFO    opendrift.models.chemicaldrift:1861: partitioning: [114, 0, 267, 119, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:05 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:05 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:05 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:05 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:05 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:05 INFO    opendrift.models.basemodel:2038: 2024-07-15 11:41:43.064707 - step 57 of 96 - 500 active elements (0 deactivated)
43:05 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:05 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:05 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.84681805654243
43:05 DEBUG   opendrift.models.basemodel:2062:               10.51702360761954 <- longitude -> 10.837940704348826
43:05 DEBUG   opendrift.models.basemodel:2067:               -35.317903023258395   <- z ->   -0.02936532482279075
43:05 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:05 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 11:00:00 (before)
                2024-07-15 12:00:00 (after)
43:05 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 11:00:00) in space  (linearNDFast)
43:05 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:05 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 12:00:00) in space  (linearNDFast)
43:05 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:05 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 11:00:00, weight 0.30) and
                      after (2024-07-15 12:00:00, weight 0.70) in time
43:05 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:05 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.482987400886266 and -59.162070298049144 degrees.
43:05 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.482987400886266 and -59.162070298049144 degrees.
43:05 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:05 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:05 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:05 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:05 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:05 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:05 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:05 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:05 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:05 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:05 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:05 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:05 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.586589 (min) 0.335907 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.366086 (min) 0.264296 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.234239 (min) 1.88161 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.82464 (min) 6.31904 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 105.863 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.2276 (min) 16.5813 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.2319 (min) 33.5537 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000688969 (min) 0.000625909 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:05 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:05 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:05 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:05 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:05 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:05 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:05 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:05 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
43:05 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0]
43:05 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3]
43:05 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 435.   0.]
 [  0.   0.   0.   0.   0.]
 [ 81.   0.   0. 197.   0.]
 [ 18.   0. 493.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:05 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:05 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:05 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.02892700498689271
43:05 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:05 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:05 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:05 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:05 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:05 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:05 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:05 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:05 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:05 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:05 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:05 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:05 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2
43:05 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
43:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:05 INFO    opendrift.models.chemicaldrift:1861: partitioning: [113, 0, 264, 123, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:05 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:05 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:05 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:05 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:05 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:05 INFO    opendrift.models.basemodel:2038: 2024-07-15 12:11:43.064707 - step 58 of 96 - 500 active elements (0 deactivated)
43:05 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:05 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:05 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.84625028586206
43:05 DEBUG   opendrift.models.basemodel:2062:               10.50227022157102 <- longitude -> 10.839254966874412
43:05 DEBUG   opendrift.models.basemodel:2067:               -36.01157519492663   <- z ->   0.0
43:05 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:05 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 12:00:00 (before)
                2024-07-15 13:00:00 (after)
43:08 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:08 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:08 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:08 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:08 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:08 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:08 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 56x52x7) for time after (2024-07-15 13:00:00)
43:08 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 12:00:00) in space  (linearNDFast)
43:08 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:08 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 13:00:00) in space  (linearNDFast)
43:08 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:08 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 12:00:00, weight 0.80) and
                      after (2024-07-15 13:00:00, weight 0.20) in time
43:08 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:08 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.497740783636964 and -59.16075603560587 degrees.
43:08 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.497740783636964 and -59.16075603560587 degrees.
43:08 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:08 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:08 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:08 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:08 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:08 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:08 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:08 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:08 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:08 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:08 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:08 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:08 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:08 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:08 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:08 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:08 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:08 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:08 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:08 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:08 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.619964 (min) 0.346997 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.326722 (min) 0.309959 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.372126 (min) 3.047 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.94496 (min) 6.5101 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 106.434 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.2035 (min) 16.5624 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.0474 (min) 33.5479 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000638897 (min) 0.000566941 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:08 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:08 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:08 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:08 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:08 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:08 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:08 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
43:08 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 0 0 2 2 0]
43:08 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 3 3 0 0 3]
43:08 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 438.   0.]
 [  0.   0.   0.   0.   0.]
 [ 87.   0.   0. 201.   0.]
 [ 18.   0. 495.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:08 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:08 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:08 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:08 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:08 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.030944121384394483
43:08 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:08 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:08 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:08 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:08 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:08 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:08 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:08 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:08 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:08 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:08 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:08 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:08 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:08 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:08 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:08 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:08 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:08 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:08 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
43:08 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:08 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
43:08 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:08 INFO    opendrift.models.chemicaldrift:1861: partitioning: [116, 0, 254, 130, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:08 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:08 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:08 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:08 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:08 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:08 INFO    opendrift.models.basemodel:2038: 2024-07-15 12:41:43.064707 - step 59 of 96 - 500 active elements (0 deactivated)
43:08 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:08 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:08 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.84595542021099
43:08 DEBUG   opendrift.models.basemodel:2062:               10.48889432620843 <- longitude -> 10.837555684719911
43:08 DEBUG   opendrift.models.basemodel:2067:               -38.28026893232668   <- z ->   -0.10030684112462196
43:08 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:08 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:08 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:08 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:08 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 12:00:00 (before)
                2024-07-15 13:00:00 (after)
43:08 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 12:00:00) in space  (linearNDFast)
43:08 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:08 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 13:00:00) in space  (linearNDFast)
43:08 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:08 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 12:00:00, weight 0.30) and
                      after (2024-07-15 13:00:00, weight 0.70) in time
43:08 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:08 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.51111668232906 and -59.162455328630045 degrees.
43:08 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.51111668232906 and -59.162455328630045 degrees.
43:08 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:08 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:08 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:08 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:08 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:08 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:08 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:08 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:08 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:08 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:08 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:08 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:08 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:08 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:08 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:08 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:08 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:08 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:08 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:08 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:08 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:08 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.627923 (min) 0.355824 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.335036 (min) 0.373539 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.02053 (min) 4.1049 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.95269 (min) 6.72953 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 108.479 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.1824 (min) 16.6156 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.1883 (min) 33.5461 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00047849 (min) 0.000489878 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:08 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:08 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:08 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:08 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:08 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:08 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:08 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:08 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
43:08 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2 2 2 0 2]
43:08 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0 0 0 3 0]
43:08 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 440.   0.]
 [  0.   0.   0.   0.   0.]
 [ 93.   0.   0. 208.   0.]
 [ 18.   0. 498.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:08 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:08 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:08 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:08 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:08 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03421146816465508
43:08 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:08 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:08 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:08 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:08 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:08 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:08 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:08 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:08 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:08 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:08 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:08 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
43:08 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:08 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
43:08 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:08 INFO    opendrift.models.chemicaldrift:1861: partitioning: [120, 0, 248, 132, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:08 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:08 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:08 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:08 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:08 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:08 INFO    opendrift.models.basemodel:2038: 2024-07-15 13:11:43.064707 - step 60 of 96 - 500 active elements (0 deactivated)
43:08 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:08 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:08 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.85045635127611
43:08 DEBUG   opendrift.models.basemodel:2062:               10.478221259805515 <- longitude -> 10.839296861344216
43:08 DEBUG   opendrift.models.basemodel:2067:               -38.46675200570538   <- z ->   0.0
43:08 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:08 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:08 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:08 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:08 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:08 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 13:00:00 (before)
                2024-07-15 14:00:00 (after)
43:10 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:10 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:10 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:10 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:10 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:10 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:10 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 56x53x7) for time after (2024-07-15 14:00:00)
43:10 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 13:00:00) in space  (linearNDFast)
43:10 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:10 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 14:00:00) in space  (linearNDFast)
43:10 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:10 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 13:00:00, weight 0.80) and
                      after (2024-07-15 14:00:00, weight 0.20) in time
43:10 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:10 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.5217897505419 and -59.16071415092148 degrees.
43:10 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.5217897505419 and -59.16071415092148 degrees.
43:10 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:10 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:10 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:10 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:10 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:10 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:10 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:10 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:10 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:10 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:10 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:10 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:10 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:10 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:10 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:10 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:10 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:10 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:10 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:10 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:10 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.653846 (min) 0.38223 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.303257 (min) 0.403452 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.735773 (min) 4.0443 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.90613 (min) 6.61361 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 109.705 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.7969 (min) 16.6441 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.2937 (min) 33.5463 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000458403 (min) 0.000510632 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:10 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:10 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:10 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:10 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:10 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:10 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
43:10 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 3 2]
43:10 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 0 0]
43:10 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 445.   0.]
 [  0.   0.   0.   0.   0.]
 [ 94.   0.   0. 211.   0.]
 [ 19.   0. 501.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:10 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:10 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:10 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.033319166171697764
43:10 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:10 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:10 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:10 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:10 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:10 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:10 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:10 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:10 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:10 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:10 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:10 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
43:10 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
43:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:10 INFO    opendrift.models.chemicaldrift:1861: partitioning: [117, 0, 242, 141, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:10 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:10 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:10 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:10 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:10 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:10 INFO    opendrift.models.basemodel:2038: 2024-07-15 13:41:43.064707 - step 61 of 96 - 500 active elements (0 deactivated)
43:10 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:10 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:10 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.8537677140679
43:10 DEBUG   opendrift.models.basemodel:2062:               10.46816604800984 <- longitude -> 10.838638009041158
43:10 DEBUG   opendrift.models.basemodel:2067:               -38.88168930821564   <- z ->   -0.020864037161933413
43:10 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:10 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:10 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:10 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:10 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 13:00:00 (before)
                2024-07-15 14:00:00 (after)
43:10 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 13:00:00) in space  (linearNDFast)
43:10 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:10 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:10 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:10 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:10 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:10 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:10 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:10 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:10 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 14:00:00) in space  (linearNDFast)
43:10 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:10 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:10 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:10 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:10 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:10 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:10 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:10 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:10 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 13:00:00, weight 0.30) and
                      after (2024-07-15 14:00:00, weight 0.70) in time
43:10 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:10 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.531844973645306 and -59.16137299121949 degrees.
43:10 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.531844973645306 and -59.16137299121949 degrees.
43:10 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:10 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:10 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:10 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:10 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:10 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:10 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:10 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:10 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:10 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:10 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:10 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:10 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:10 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:10 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:10 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:10 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:10 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:10 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:10 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:10 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.648448 (min) 0.385741 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.312174 (min) 0.457849 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.939151 (min) 2.63292 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.45498 (min) 5.80201 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 110.453 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.4644 (min) 16.715 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.969 (min) 33.533 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00108563 (min) 0.000430433 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:10 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:10 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 4 elements to seafloor.
43:10 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:10 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:10 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:10 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:10 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
43:10 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 2 0]
43:10 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 0 3]
43:10 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 448.   0.]
 [  0.   0.   0.   0.   0.]
 [ 97.   0.   0. 222.   0.]
 [ 19.   0. 507.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:10 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:10 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:10 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.02678793069446281
43:10 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:10 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:10 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:10 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:10 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:10 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:10 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:10 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
43:10 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
43:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:10 INFO    opendrift.models.chemicaldrift:1861: partitioning: [117, 0, 239, 144, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:10 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:10 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:10 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:10 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:10 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:10 INFO    opendrift.models.basemodel:2038: 2024-07-15 14:11:43.064707 - step 62 of 96 - 500 active elements (0 deactivated)
43:10 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:10 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:10 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.85609550768539
43:10 DEBUG   opendrift.models.basemodel:2062:               10.458360346628469 <- longitude -> 10.836785830720755
43:10 DEBUG   opendrift.models.basemodel:2067:               -38.79766509986193   <- z ->   0.0
43:10 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:10 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:10 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:10 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:10 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:10 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 14:00:00 (before)
                2024-07-15 15:00:00 (after)
43:12 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:12 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:12 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:12 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:12 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:12 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:12 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 58x56x7) for time after (2024-07-15 15:00:00)
43:12 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 14:00:00) in space  (linearNDFast)
43:12 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:12 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 15:00:00) in space  (linearNDFast)
43:12 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:12 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:12 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 14:00:00, weight 0.80) and
                      after (2024-07-15 15:00:00, weight 0.20) in time
43:12 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:12 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.54165066433956 and -59.16322516140576 degrees.
43:12 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.54165066433956 and -59.16322516140576 degrees.
43:12 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:12 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:12 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:12 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:12 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:12 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:12 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:12 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:12 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:12 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:12 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:12 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:12 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:12 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:12 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:12 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:12 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:12 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:12 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:12 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:12 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:12 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:12 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.559531 (min) 0.365171 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.300307 (min) 0.419759 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.841362 (min) 3.1768 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.78358 (min) 5.75835 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 111.811 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.4605 (min) 16.6384 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.0278 (min) 33.5249 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00100788 (min) 0.000717892 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:12 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
43:12 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:12 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:12 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:12 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:12 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
43:12 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 2]
43:12 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 0]
43:12 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 450.   0.]
 [  0.   0.   0.   0.   0.]
 [ 99.   0.   0. 228.   0.]
 [ 19.   0. 513.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:12 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:12 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:12 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:12 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:12 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.02564292560251244
43:12 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:12 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:12 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:12 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:12 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
43:12 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:12 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
43:12 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:12 INFO    opendrift.models.chemicaldrift:1861: partitioning: [117, 0, 235, 148, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:12 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:12 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:12 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:12 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:12 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:12 INFO    opendrift.models.basemodel:2038: 2024-07-15 14:41:43.064707 - step 63 of 96 - 500 active elements (0 deactivated)
43:12 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:12 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:12 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.85728115505511
43:12 DEBUG   opendrift.models.basemodel:2062:               10.452696504959414 <- longitude -> 10.837466998557185
43:12 DEBUG   opendrift.models.basemodel:2067:               -38.42774492931071   <- z ->   0.0
43:12 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:12 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:12 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:12 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:12 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 14:00:00 (before)
                2024-07-15 15:00:00 (after)
43:12 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 14:00:00) in space  (linearNDFast)
43:12 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:12 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 15:00:00) in space  (linearNDFast)
43:12 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:12 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 14:00:00, weight 0.30) and
                      after (2024-07-15 15:00:00, weight 0.70) in time
43:12 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:12 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.54731450621936 and -59.16254400105946 degrees.
43:12 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.54731450621936 and -59.16254400105946 degrees.
43:12 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:12 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:12 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:12 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:12 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:12 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:12 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:12 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:12 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:12 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:12 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:12 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:12 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:12 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:12 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:12 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:12 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:12 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:12 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:12 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:12 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:12 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:12 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.480508 (min) 0.453869 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.273742 (min) 0.436625 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.417203 (min) 3.46186 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.42288 (min) 5.73349 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 112.669 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.6831 (min) 16.8079 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.967 (min) 33.5181 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000658762 (min) 0.00074243 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:12 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:12 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:12 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:12 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:12 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:12 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
43:12 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 3 0 2 2 0 0 0]
43:12 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0 0 3 3 3]
43:12 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 454.   0.]
 [  0.   0.   0.   0.   0.]
 [102.   0.   0. 234.   0.]
 [ 20.   0. 517.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:12 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:12 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:12 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:12 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:12 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.029181808708198493
43:12 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:12 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:12 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:12 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:12 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:12 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:12 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9
43:12 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:12 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements
43:12 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:12 INFO    opendrift.models.chemicaldrift:1861: partitioning: [117, 0, 232, 151, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:12 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:12 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:12 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:12 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:12 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:12 INFO    opendrift.models.basemodel:2038: 2024-07-15 15:11:43.064707 - step 64 of 96 - 500 active elements (0 deactivated)
43:12 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:12 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:12 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.857768654610254
43:12 DEBUG   opendrift.models.basemodel:2062:               10.44650723086486 <- longitude -> 10.837443211135641
43:12 DEBUG   opendrift.models.basemodel:2067:               -37.75354229016961   <- z ->   0.0
43:12 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:12 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:12 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:12 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:12 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:12 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 15:00:00 (before)
                2024-07-15 16:00:00 (after)
43:14 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:14 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:14 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:14 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:14 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:14 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:14 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 59x56x7) for time after (2024-07-15 16:00:00)
43:14 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 15:00:00) in space  (linearNDFast)
43:14 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:14 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 16:00:00) in space  (linearNDFast)
43:14 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:14 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 15:00:00, weight 0.80) and
                      after (2024-07-15 16:00:00, weight 0.20) in time
43:14 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:15 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.55350378419174 and -59.162567782515374 degrees.
43:15 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.55350378419174 and -59.162567782515374 degrees.
43:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:15 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:15 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:15 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:15 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:15 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:15 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:15 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:15 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:15 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:15 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.513069 (min) 0.427522 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.243602 (min) 0.513008 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.577425 (min) 4.13738 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.95254 (min) 6.16322 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 113.168 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.7931 (min) 16.7441 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.9688 (min) 33.5113 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000773257 (min) 0.00079569 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:15 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:15 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:15 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:15 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:15 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:15 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
43:15 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 2 0]
43:15 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 0 3]
43:15 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 459.   0.]
 [  0.   0.   0.   0.   0.]
 [103.   0.   0. 243.   0.]
 [ 20.   0. 526.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:15 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:15 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:15 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03734909180834579
43:15 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:15 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:15 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:15 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:15 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:15 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:15 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:15 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:15 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 11
43:15 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 11 elements
43:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:15 INFO    opendrift.models.chemicaldrift:1861: partitioning: [113, 0, 232, 155, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:15 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:15 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:15 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
43:15 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:15 INFO    opendrift.models.basemodel:2038: 2024-07-15 15:41:43.064707 - step 65 of 96 - 500 active elements (0 deactivated)
43:15 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:15 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:15 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.85855816442601
43:15 DEBUG   opendrift.models.basemodel:2062:               10.44081465056941 <- longitude -> 10.83645961599774
43:15 DEBUG   opendrift.models.basemodel:2067:               -38.026647656903   <- z ->   -0.43613088556436613
43:15 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:15 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 15:00:00 (before)
                2024-07-15 16:00:00 (after)
43:15 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 15:00:00) in space  (linearNDFast)
43:15 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:15 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 16:00:00) in space  (linearNDFast)
43:15 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:15 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 15:00:00, weight 0.30) and
                      after (2024-07-15 16:00:00, weight 0.70) in time
43:15 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:15 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.55919636752051 and -59.16355138067443 degrees.
43:15 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.55919636752051 and -59.16355138067443 degrees.
43:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:15 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:15 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:15 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:15 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:15 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:15 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:15 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:15 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:15 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:15 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.460164 (min) 0.412184 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.22952 (min) 0.475654 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 2.28614 (min) 4.44702 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 5.50427 (min) 6.43378 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 113.88 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.656 (min) 16.6562 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.972 (min) 33.5004 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000644118 (min) 0.00114016 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:15 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:15 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:15 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:15 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:15 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:15 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:15 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:15 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
43:15 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 0]
43:15 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 3]
43:15 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 460.   0.]
 [  0.   0.   0.   0.   0.]
 [106.   0.   0. 253.   0.]
 [ 20.   0. 537.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:15 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:15 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:15 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.041550255233287134
43:15 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:15 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:15 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:15 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:15 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:15 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
43:15 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
43:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:15 INFO    opendrift.models.chemicaldrift:1861: partitioning: [115, 0, 232, 153, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:15 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:15 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:15 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:15 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:15 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:15 INFO    opendrift.models.basemodel:2038: 2024-07-15 16:11:43.064707 - step 66 of 96 - 500 active elements (0 deactivated)
43:15 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:15 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:15 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.861463087981555
43:15 DEBUG   opendrift.models.basemodel:2062:               10.436054975543321 <- longitude -> 10.839303645921063
43:15 DEBUG   opendrift.models.basemodel:2067:               -37.97447935485981   <- z ->   0.0
43:15 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:15 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 16:00:00 (before)
                2024-07-15 17:00:00 (after)
43:17 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:17 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:17 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:17 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:17 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:17 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:17 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 60x57x7) for time after (2024-07-15 17:00:00)
43:17 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 16:00:00) in space  (linearNDFast)
43:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:17 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 17:00:00) in space  (linearNDFast)
43:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:17 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 16:00:00, weight 0.80) and
                      after (2024-07-15 17:00:00, weight 0.20) in time
43:17 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.56395603167301 and -59.16070733809088 degrees.
43:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.56395603167301 and -59.16070733809088 degrees.
43:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:17 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:17 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:17 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:17 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.570823 (min) 0.383614 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.222203 (min) 0.501225 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 2.85156 (min) 4.92965 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 5.5839 (min) 6.68563 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 114.431 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.6848 (min) 16.6022 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.1841 (min) 33.492 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000695062 (min) 0.000743765 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:17 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:17 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:17 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:17 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:17 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:17 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:17 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
43:17 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0]
43:17 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3]
43:17 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 463.   0.]
 [  0.   0.   0.   0.   0.]
 [107.   0.   0. 256.   0.]
 [ 20.   0. 543.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:17 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:17 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:17 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04766143156144218
43:17 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:17 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:17 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:17 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:17 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:17 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:17 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:17 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:17 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:17 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:17 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:17 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 8
43:17 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 8 elements
43:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:17 INFO    opendrift.models.chemicaldrift:1861: partitioning: [113, 0, 233, 154, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:17 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:17 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:17 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:17 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:17 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:17 INFO    opendrift.models.basemodel:2038: 2024-07-15 16:41:43.064707 - step 67 of 96 - 500 active elements (0 deactivated)
43:17 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:17 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:17 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.865416132950955
43:17 DEBUG   opendrift.models.basemodel:2062:               10.43219724451272 <- longitude -> 10.843898728844563
43:17 DEBUG   opendrift.models.basemodel:2067:               -38.618846991614966   <- z ->   0.0
43:17 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:17 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 16:00:00 (before)
                2024-07-15 17:00:00 (after)
43:17 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 16:00:00) in space  (linearNDFast)
43:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:17 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 17:00:00) in space  (linearNDFast)
43:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:17 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 16:00:00, weight 0.30) and
                      after (2024-07-15 17:00:00, weight 0.70) in time
43:17 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.56781377589156 and -59.15611226087871 degrees.
43:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.56781377589156 and -59.15611226087871 degrees.
43:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:17 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:17 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:17 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:17 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.496553 (min) 0.416515 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.154316 (min) 0.507184 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 2.30813 (min) 4.97734 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 5.19287 (min) 6.62823 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 114.302 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.4626 (min) 16.6371 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 27.9937 (min) 33.4835 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000699111 (min) 0.000512598 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:17 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:17 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:17 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:17 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:17 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:17 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:17 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:17 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
43:17 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 0 2 2]
43:17 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 0 0]
43:17 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 466.   0.]
 [  0.   0.   0.   0.   0.]
 [110.   0.   0. 262.   0.]
 [ 20.   0. 551.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:17 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:17 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:17 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04262869001544102
43:17 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:17 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:17 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:17 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:17 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:17 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:17 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:17 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:17 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:17 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:17 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:17 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 11
43:17 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 11 elements
43:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:17 INFO    opendrift.models.chemicaldrift:1861: partitioning: [113, 0, 235, 152, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:17 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:17 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:17 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:17 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:17 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:17 INFO    opendrift.models.basemodel:2038: 2024-07-15 17:11:43.064707 - step 68 of 96 - 500 active elements (0 deactivated)
43:17 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:17 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:17 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.86751921786573
43:17 DEBUG   opendrift.models.basemodel:2062:               10.429074747956758 <- longitude -> 10.848943717069996
43:17 DEBUG   opendrift.models.basemodel:2067:               -39.49081838202231   <- z ->   -0.16780397251523826
43:17 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:17 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 17:00:00 (before)
                2024-07-15 18:00:00 (after)
43:19 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:19 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:19 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:19 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:19 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:19 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:19 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 62x57x7) for time after (2024-07-15 18:00:00)
43:19 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 17:00:00) in space  (linearNDFast)
43:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:19 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 18:00:00) in space  (linearNDFast)
43:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:19 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
43:19 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 17:00:00, weight 0.80) and
                      after (2024-07-15 18:00:00, weight 0.20) in time
43:19 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.57093627911909 and -59.151067278778164 degrees.
43:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.57093627911909 and -59.151067278778164 degrees.
43:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:19 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:19 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:19 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:19 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.413327 (min) 0.441959 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.211617 (min) 0.519049 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 2.55303 (min) 5.72098 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.71453 (min) 6.51357 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 113.24 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.2993 (min) 16.7047 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.3876 (min) 33.5118 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00103882 (min) 0.00053037 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:19 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:19 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:19 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:19 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:19 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:19 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:19 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
43:19 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 2 2]
43:19 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 0 0]
43:19 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 468.   0.]
 [  0.   0.   0.   0.   0.]
 [113.   0.   0. 268.   0.]
 [ 20.   0. 562.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:19 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:19 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:19 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04759905896581349
43:19 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:19 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:19 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:19 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:19 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:19 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:19 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:19 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:19 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:19 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:19 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 13
43:19 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 13 elements
43:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:19 INFO    opendrift.models.chemicaldrift:1861: partitioning: [114, 0, 237, 149, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:19 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:19 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:19 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:19 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:19 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:19 INFO    opendrift.models.basemodel:2038: 2024-07-15 17:41:43.064707 - step 69 of 96 - 500 active elements (0 deactivated)
43:19 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:19 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:19 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.86461680751286
43:19 DEBUG   opendrift.models.basemodel:2062:               10.424448423664327 <- longitude -> 10.854431671174442
43:19 DEBUG   opendrift.models.basemodel:2067:               -39.166707140398856   <- z ->   0.0
43:19 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 17:00:00 (before)
                2024-07-15 18:00:00 (after)
43:19 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 17:00:00) in space  (linearNDFast)
43:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:19 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 18:00:00) in space  (linearNDFast)
43:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:19 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 17:00:00, weight 0.30) and
                      after (2024-07-15 18:00:00, weight 0.70) in time
43:19 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.57556259711869 and -59.14557931595087 degrees.
43:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.57556259711869 and -59.14557931595087 degrees.
43:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:19 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:19 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:19 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:19 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.403043 (min) 0.417708 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.219307 (min) 0.499561 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 3.50794 (min) 5.68958 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.07641 (min) 6.46081 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 114.056 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.6475 (min) 16.6926 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.5124 (min) 33.4597 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00123125 (min) 0.000667409 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:19 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:19 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:19 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:19 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:19 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:19 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:19 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:19 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
43:19 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 2]
43:19 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0]
43:19 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 469.   0.]
 [  0.   0.   0.   0.   0.]
 [116.   0.   0. 276.   0.]
 [ 20.   0. 575.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:19 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:19 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:19 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05285568448486006
43:19 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:19 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:19 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:19 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:19 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:19 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:19 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:19 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 11
43:19 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 11 elements
43:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:19 INFO    opendrift.models.chemicaldrift:1861: partitioning: [116, 0, 240, 144, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:19 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:19 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:19 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:19 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:19 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:19 INFO    opendrift.models.basemodel:2038: 2024-07-15 18:11:43.064707 - step 70 of 96 - 500 active elements (0 deactivated)
43:19 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:19 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:19 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.86655258490932
43:19 DEBUG   opendrift.models.basemodel:2062:               10.418745698140679 <- longitude -> 10.858925213151492
43:19 DEBUG   opendrift.models.basemodel:2067:               -40.138762935080194   <- z ->   0.0
43:19 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 18:00:00 (before)
                2024-07-15 19:00:00 (after)
43:21 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:21 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:21 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:21 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:21 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:21 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:21 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 62x57x7) for time after (2024-07-15 19:00:00)
43:21 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 18:00:00) in space  (linearNDFast)
43:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:21 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 19:00:00) in space  (linearNDFast)
43:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:21 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 18:00:00, weight 0.80) and
                      after (2024-07-15 19:00:00, weight 0.20) in time
43:21 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.58126532098908 and -59.14108577679452 degrees.
43:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.58126532098908 and -59.14108577679452 degrees.
43:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:21 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:21 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:21 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:21 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.406891 (min) 0.531047 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.244216 (min) 0.552721 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 3.68238 (min) 5.90567 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.78781 (min) 6.67712 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 117.952 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.1689 (min) 16.6504 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.4589 (min) 33.4451 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00115687 (min) 0.000636645 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:21 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:21 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:21 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:21 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:21 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:21 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
43:21 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 2 2]
43:21 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0 0]
43:21 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 470.   0.]
 [  0.   0.   0.   0.   0.]
 [120.   0.   0. 281.   0.]
 [ 20.   0. 586.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:21 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:21 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:21 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.057423934306794905
43:21 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:21 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:21 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:21 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12
43:21 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements
43:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:21 INFO    opendrift.models.chemicaldrift:1861: partitioning: [119, 0, 243, 138, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:21 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:21 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:21 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:21 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:21 INFO    opendrift.models.basemodel:2038: 2024-07-15 18:41:43.064707 - step 71 of 96 - 500 active elements (0 deactivated)
43:21 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:21 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:21 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.87401513042178
43:21 DEBUG   opendrift.models.basemodel:2062:               10.413296742949179 <- longitude -> 10.86366089483739
43:21 DEBUG   opendrift.models.basemodel:2067:               -40.59921126237652   <- z ->   0.0
43:21 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 18:00:00 (before)
                2024-07-15 19:00:00 (after)
43:21 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 18:00:00) in space  (linearNDFast)
43:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:21 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 19:00:00) in space  (linearNDFast)
43:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:21 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 18:00:00, weight 0.30) and
                      after (2024-07-15 19:00:00, weight 0.70) in time
43:21 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.586714277567594 and -59.1363500968006 degrees.
43:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.586714277567594 and -59.1363500968006 degrees.
43:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:21 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:21 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:21 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:21 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.35594 (min) 0.440931 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.250199 (min) 0.540596 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 3.70262 (min) 6.60228 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.08624 (min) 6.82934 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 121.813 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.5292 (min) 16.6238 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.4524 (min) 33.4566 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00126892 (min) 0.000594 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:21 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:21 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:21 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:21 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:21 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:21 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:21 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 0
43:21 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:21 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05985479562983654
43:21 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:21 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:21 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:21 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:21 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:21 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12
43:21 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements
43:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:21 INFO    opendrift.models.chemicaldrift:1861: partitioning: [119, 0, 246, 135, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:21 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:21 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:21 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:21 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:21 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:21 INFO    opendrift.models.basemodel:2038: 2024-07-15 19:11:43.064707 - step 72 of 96 - 500 active elements (0 deactivated)
43:21 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:21 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:21 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.877680906363324
43:21 DEBUG   opendrift.models.basemodel:2062:               10.410091516562394 <- longitude -> 10.87039065218366
43:21 DEBUG   opendrift.models.basemodel:2067:               -41.58241786175413   <- z ->   0.0
43:21 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 19:00:00 (before)
                2024-07-15 20:00:00 (after)
43:23 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:23 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:23 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:23 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:23 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:23 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:23 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 64x57x7) for time after (2024-07-15 20:00:00)
43:23 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 19:00:00) in space  (linearNDFast)
43:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:23 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 20:00:00) in space  (linearNDFast)
43:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:23 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 19:00:00, weight 0.80) and
                      after (2024-07-15 20:00:00, weight 0.20) in time
43:23 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.58991949876102 and -59.12962032341577 degrees.
43:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.58991949876102 and -59.12962032341577 degrees.
43:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:23 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:23 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:23 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:23 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.349052 (min) 0.535379 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.238936 (min) 0.500332 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 3.8927 (min) 7.13516 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.23763 (min) 6.61948 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 123.74 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.1156 (min) 16.6013 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.4763 (min) 33.5888 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00112034 (min) 0.000588859 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:23 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:23 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:23 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:23 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:23 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:23 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:23 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
43:23 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 2 2 2]
43:23 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0 0 0]
43:23 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 471.   0.]
 [  0.   0.   0.   0.   0.]
 [125.   0.   0. 295.   0.]
 [ 20.   0. 610.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:23 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:23 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:23 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0619899175749066
43:23 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:23 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:23 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:23 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:23 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:23 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:23 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:23 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:23 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:23 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:23 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 11
43:23 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 11 elements
43:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:23 INFO    opendrift.models.chemicaldrift:1861: partitioning: [123, 0, 243, 134, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:23 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:23 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:23 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 5 elements to seafloor.
43:23 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:23 INFO    opendrift.models.basemodel:2038: 2024-07-15 19:41:43.064707 - step 73 of 96 - 500 active elements (0 deactivated)
43:23 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:23 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:23 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.87908210876021
43:23 DEBUG   opendrift.models.basemodel:2062:               10.405295728904512 <- longitude -> 10.875724129436653
43:23 DEBUG   opendrift.models.basemodel:2067:               -44.02758878184338   <- z ->   0.0
43:23 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:23 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 19:00:00 (before)
                2024-07-15 20:00:00 (after)
43:23 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 19:00:00) in space  (linearNDFast)
43:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:23 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 20:00:00) in space  (linearNDFast)
43:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:23 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 19:00:00, weight 0.30) and
                      after (2024-07-15 20:00:00, weight 0.70) in time
43:23 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.5947152886982 and -59.124286856988796 degrees.
43:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.5947152886982 and -59.124286856988796 degrees.
43:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:23 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:23 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:23 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:23 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.303913 (min) 0.518137 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.253961 (min) 0.527694 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 4.38904 (min) 7.3858 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.15326 (min) 5.90196 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 124.341 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.8825 (min) 16.6462 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.5657 (min) 33.6874 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00119954 (min) 0.000676174 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:23 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:23 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:23 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:23 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:23 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:23 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:23 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:23 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
43:23 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 0]
43:23 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3]
43:23 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 475.   0.]
 [  0.   0.   0.   0.   0.]
 [126.   0.   0. 304.   0.]
 [ 20.   0. 621.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:23 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:23 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:23 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.06030104547912992
43:23 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:23 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:23 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:23 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12
43:23 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements
43:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:23 INFO    opendrift.models.chemicaldrift:1861: partitioning: [120, 0, 247, 133, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:23 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:23 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:23 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:23 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:23 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:23 INFO    opendrift.models.basemodel:2038: 2024-07-15 20:11:43.064707 - step 74 of 96 - 500 active elements (0 deactivated)
43:23 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:23 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:23 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.88149270986043
43:23 DEBUG   opendrift.models.basemodel:2062:               10.400340896294006 <- longitude -> 10.88540998774006
43:23 DEBUG   opendrift.models.basemodel:2067:               -46.496487402350766   <- z ->   0.0
43:23 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:23 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 20:00:00 (before)
                2024-07-15 21:00:00 (after)
43:25 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:25 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:25 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:25 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:25 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:25 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:25 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 64x58x7) for time after (2024-07-15 21:00:00)
43:25 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 20:00:00) in space  (linearNDFast)
43:25 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:25 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 21:00:00) in space  (linearNDFast)
43:25 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:25 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 20:00:00, weight 0.80) and
                      after (2024-07-15 21:00:00, weight 0.20) in time
43:25 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:25 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.59967012431809 and -59.11460099893801 degrees.
43:25 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.59967012431809 and -59.11460099893801 degrees.
43:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:25 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:25 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:25 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:25 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:25 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:25 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:25 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:25 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:25 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:25 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.37751 (min) 0.58061 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.24329 (min) 0.523911 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 4.78862 (min) 7.55582 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.94237 (min) 6.0633 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 125.418 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.8213 (min) 16.6276 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.5578 (min) 33.7384 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.0012516 (min) 0.000543359 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:25 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:25 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:25 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:25 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:25 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:25 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:25 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
43:25 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 0 0 2]
43:25 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 3 3 0]
43:25 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 477.   0.]
 [  0.   0.   0.   0.   0.]
 [130.   0.   0. 311.   0.]
 [ 20.   0. 633.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:25 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:25 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:25 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05963727001105203
43:25 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:25 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:25 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:25 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:25 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:25 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:25 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:25 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:25 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:25 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:25 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:25 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 14
43:25 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 14 elements
43:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:25 INFO    opendrift.models.chemicaldrift:1861: partitioning: [122, 0, 250, 128, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:25 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:25 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:25 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:25 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:25 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:25 INFO    opendrift.models.basemodel:2038: 2024-07-15 20:41:43.064707 - step 75 of 96 - 500 active elements (0 deactivated)
43:25 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:25 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:25 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.88307984366281
43:25 DEBUG   opendrift.models.basemodel:2062:               10.394990363258005 <- longitude -> 10.895778379161321
43:25 DEBUG   opendrift.models.basemodel:2067:               -49.2692126360325   <- z ->   0.0
43:25 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:25 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 20:00:00 (before)
                2024-07-15 21:00:00 (after)
43:25 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 20:00:00) in space  (linearNDFast)
43:25 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:25 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 21:00:00) in space  (linearNDFast)
43:25 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:25 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 20:00:00, weight 0.30) and
                      after (2024-07-15 21:00:00, weight 0.70) in time
43:25 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:25 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.605020662516395 and -59.10423260076226 degrees.
43:25 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.605020662516395 and -59.10423260076226 degrees.
43:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:25 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:25 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:25 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:25 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:25 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:25 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:25 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:25 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:25 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:25 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.462246 (min) 0.504141 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.249323 (min) 0.466966 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 5.03071 (min) 7.64168 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.75699 (min) 6.11038 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 125.866 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.7827 (min) 16.5737 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.5377 (min) 33.7764 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00126516 (min) 0.000664831 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:25 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:25 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:25 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:25 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:25 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:25 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:25 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:25 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
43:25 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 2 2 2]
43:25 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 0 0 0]
43:25 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 479.   0.]
 [  0.   0.   0.   0.   0.]
 [134.   0.   0. 318.   0.]
 [ 20.   0. 647.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:25 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:25 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:25 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05950016821795504
43:25 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:25 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:25 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:25 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:25 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:25 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:25 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:25 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:25 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:25 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:25 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:25 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:25 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:25 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 11
43:25 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:25 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 11 elements
43:25 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:25 INFO    opendrift.models.chemicaldrift:1861: partitioning: [124, 0, 251, 125, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:25 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:25 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:25 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:25 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:25 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:25 INFO    opendrift.models.basemodel:2038: 2024-07-15 21:11:43.064707 - step 76 of 96 - 500 active elements (0 deactivated)
43:25 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:25 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:25 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.884657787727086
43:25 DEBUG   opendrift.models.basemodel:2062:               10.391274833525438 <- longitude -> 10.899806070730735
43:25 DEBUG   opendrift.models.basemodel:2067:               -52.18358886610158   <- z ->   0.0
43:25 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:25 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 21:00:00 (before)
                2024-07-15 22:00:00 (after)
43:27 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:27 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:27 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:27 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:27 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:27 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:27 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 65x59x8) for time after (2024-07-15 22:00:00)
43:27 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 21:00:00) in space  (linearNDFast)
43:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:27 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 22:00:00) in space  (linearNDFast)
43:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:27 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 21:00:00, weight 0.80) and
                      after (2024-07-15 22:00:00, weight 0.20) in time
43:27 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.60873618630384 and -59.100204914897205 degrees.
43:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.60873618630384 and -59.100204914897205 degrees.
43:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:27 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:27 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:27 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:27 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.482887 (min) 0.517851 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.234865 (min) 0.450146 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 4.93051 (min) 7.4979 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.51517 (min) 6.03481 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 127.566 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.7582 (min) 16.5354 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.3097 (min) 33.8028 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00108382 (min) 0.000607733 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:27 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:27 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:27 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:27 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:27 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:27 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:27 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
43:27 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 0]
43:27 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 3]
43:27 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 481.   0.]
 [  0.   0.   0.   0.   0.]
 [136.   0.   0. 324.   0.]
 [ 20.   0. 658.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:27 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:27 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:27 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05740239145410196
43:27 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:27 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:27 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:27 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:27 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:27 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:27 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:27 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:27 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:27 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:27 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:27 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:27 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:27 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
43:27 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
43:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:27 INFO    opendrift.models.chemicaldrift:1861: partitioning: [124, 0, 249, 127, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:27 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:27 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:27 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:27 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:27 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:27 INFO    opendrift.models.basemodel:2038: 2024-07-15 21:41:43.064707 - step 77 of 96 - 500 active elements (0 deactivated)
43:27 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:27 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:27 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.889366703149356
43:27 DEBUG   opendrift.models.basemodel:2062:               10.388353259771486 <- longitude -> 10.904611854963443
43:27 DEBUG   opendrift.models.basemodel:2067:               -54.856556191380214   <- z ->   0.0
43:27 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:27 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 21:00:00 (before)
                2024-07-15 22:00:00 (after)
43:27 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 21:00:00) in space  (linearNDFast)
43:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:27 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 22:00:00) in space  (linearNDFast)
43:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:27 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 21:00:00, weight 0.30) and
                      after (2024-07-15 22:00:00, weight 0.70) in time
43:27 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.61165777958429 and -59.095399124390696 degrees.
43:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.61165777958429 and -59.095399124390696 degrees.
43:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:27 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:27 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:27 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:27 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.497225 (min) 0.504313 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.235854 (min) 0.415872 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 4.5271 (min) 7.0062 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.1853 (min) 5.81383 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 130.313 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.6943 (min) 16.5621 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.5709 (min) 33.8451 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00106309 (min) 0.000533893 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:27 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:27 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:27 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:27 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:27 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:27 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:27 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:27 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
43:27 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2 2 2]
43:27 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0 0 0]
43:27 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 482.   0.]
 [  0.   0.   0.   0.   0.]
 [141.   0.   0. 330.   0.]
 [ 20.   0. 664.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:27 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:27 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:27 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05159274798495244
43:27 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:27 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:27 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:27 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:27 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:27 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:27 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:27 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7
43:27 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 7 elements
43:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:27 INFO    opendrift.models.chemicaldrift:1861: partitioning: [128, 0, 249, 123, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:27 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:27 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:27 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:27 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:27 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:27 INFO    opendrift.models.basemodel:2038: 2024-07-15 22:11:43.064707 - step 78 of 96 - 500 active elements (0 deactivated)
43:27 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:27 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:27 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.891200533883236
43:27 DEBUG   opendrift.models.basemodel:2062:               10.38519805192414 <- longitude -> 10.909837216305627
43:27 DEBUG   opendrift.models.basemodel:2067:               -57.075338840104045   <- z ->   0.0
43:27 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:27 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 22:00:00 (before)
                2024-07-15 23:00:00 (after)
43:29 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:29 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:29 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:29 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:29 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:29 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:29 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 65x60x8) for time after (2024-07-15 23:00:00)
43:29 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 22:00:00) in space  (linearNDFast)
43:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:29 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 23:00:00) in space  (linearNDFast)
43:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:29 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 22:00:00, weight 0.80) and
                      after (2024-07-15 23:00:00, weight 0.20) in time
43:29 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.614812969885676 and -59.0901737710087 degrees.
43:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.614812969885676 and -59.0901737710087 degrees.
43:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:29 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:29 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:29 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:29 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.496178 (min) 0.417191 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.205722 (min) 0.389432 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 4.15926 (min) 6.58626 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.77879 (min) 5.65482 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 131.094 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.6072 (min) 16.5764 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.7705 (min) 33.8967 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00106346 (min) 0.00050221 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:29 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:29 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:29 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:29 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:29 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:29 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:29 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
43:29 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2 0 0 0 2]
43:29 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0 3 3 3 0]
43:29 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 486.   0.]
 [  0.   0.   0.   0.   0.]
 [145.   0.   0. 332.   0.]
 [ 20.   0. 671.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:29 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:29 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:29 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04965515514643273
43:29 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:29 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:29 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:29 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:29 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:29 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:29 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:29 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:29 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:29 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:29 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
43:29 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
43:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:29 INFO    opendrift.models.chemicaldrift:1861: partitioning: [128, 0, 245, 127, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:29 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:29 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:29 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:29 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:29 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:29 INFO    opendrift.models.basemodel:2038: 2024-07-15 22:41:43.064707 - step 79 of 96 - 500 active elements (0 deactivated)
43:29 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:29 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:29 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.89344095027766
43:29 DEBUG   opendrift.models.basemodel:2062:               10.383039301174824 <- longitude -> 10.91469946085922
43:29 DEBUG   opendrift.models.basemodel:2067:               -58.86554863458601   <- z ->   0.0
43:29 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 22:00:00 (before)
                2024-07-15 23:00:00 (after)
43:29 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 22:00:00) in space  (linearNDFast)
43:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:29 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-15 23:00:00) in space  (linearNDFast)
43:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:29 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 22:00:00, weight 0.30) and
                      after (2024-07-15 23:00:00, weight 0.70) in time
43:29 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.6169717280085 and -59.08531152240676 degrees.
43:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.6169717280085 and -59.08531152240676 degrees.
43:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:29 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:29 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:29 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:29 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:29 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.47512 (min) 0.447066 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.192462 (min) 0.357607 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 3.7051 (min) 6.27992 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.25271 (min) 5.80593 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 132.356 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.533 (min) 16.5793 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.5985 (min) 33.9401 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00105435 (min) 0.000470703 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:29 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:29 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:29 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
43:29 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:29 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:29 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:29 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:29 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
43:29 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 2]
43:29 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0]
43:29 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 487.   0.]
 [  0.   0.   0.   0.   0.]
 [148.   0.   0. 336.   0.]
 [ 20.   0. 675.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:29 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:29 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:29 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05022096394466852
43:29 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:29 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:29 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:30 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:30 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:30 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:30 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:30 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:30 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:30 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:30 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12
43:30 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:30 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements
43:30 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:30 INFO    opendrift.models.chemicaldrift:1861: partitioning: [130, 0, 250, 120, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:30 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:30 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:30 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:30 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:30 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:30 INFO    opendrift.models.basemodel:2038: 2024-07-15 23:11:43.064707 - step 80 of 96 - 500 active elements (0 deactivated)
43:30 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:30 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:30 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.89329053516906
43:30 DEBUG   opendrift.models.basemodel:2062:               10.381255520562314 <- longitude -> 10.918951956465945
43:30 DEBUG   opendrift.models.basemodel:2067:               -60.14744971998608   <- z ->   -0.1618524634156081
43:30 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:30 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:30 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:30 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:30 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:30 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:30 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:30 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:30 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 23:00:00 (before)
                2024-07-16 00:00:00 (after)
43:32 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:32 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:32 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:32 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:32 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:32 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:32 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 66x62x8) for time after (2024-07-16 00:00:00)
43:32 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 23:00:00) in space  (linearNDFast)
43:32 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:32 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 00:00:00) in space  (linearNDFast)
43:32 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:32 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 23:00:00, weight 0.80) and
                      after (2024-07-16 00:00:00, weight 0.20) in time
43:32 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:32 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.6187555042589 and -59.0810590243877 degrees.
43:32 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.6187555042589 and -59.0810590243877 degrees.
43:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:32 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:32 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:32 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:32 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:32 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:32 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:32 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:32 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:32 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:32 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:32 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:32 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.506136 (min) 0.500524 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.184617 (min) 0.362159 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 3.35826 (min) 5.8645 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.09718 (min) 5.52661 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 132.034 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.4734 (min) 16.5018 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.6001 (min) 33.9811 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00108171 (min) 0.000408681 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:32 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:32 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:32 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:32 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:32 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:32 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:32 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
43:32 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0]
43:32 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3]
43:32 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 488.   0.]
 [  0.   0.   0.   0.   0.]
 [150.   0.   0. 340.   0.]
 [ 20.   0. 687.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:32 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:32 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:32 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:32 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:32 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04523092328416739
43:32 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:32 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:32 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:32 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:32 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:32 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:32 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:32 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:32 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:32 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:32 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:32 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:32 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:32 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9
43:32 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:32 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements
43:32 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:32 INFO    opendrift.models.chemicaldrift:1861: partitioning: [131, 0, 251, 118, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:32 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:32 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:32 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:32 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
43:32 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:32 INFO    opendrift.models.basemodel:2038: 2024-07-15 23:41:43.064707 - step 81 of 96 - 500 active elements (0 deactivated)
43:32 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:32 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:32 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.891218260214956
43:32 DEBUG   opendrift.models.basemodel:2062:               10.379334326532383 <- longitude -> 10.92314239425736
43:32 DEBUG   opendrift.models.basemodel:2067:               -61.40231694898634   <- z ->   -0.023363020370147147
43:32 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:32 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-15 23:00:00 (before)
                2024-07-16 00:00:00 (after)
43:32 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-15 23:00:00) in space  (linearNDFast)
43:32 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:32 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 00:00:00) in space  (linearNDFast)
43:32 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:32 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-15 23:00:00, weight 0.30) and
                      after (2024-07-16 00:00:00, weight 0.70) in time
43:32 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:32 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.62067670606172 and -59.07686858384795 degrees.
43:32 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.62067670606172 and -59.07686858384795 degrees.
43:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:32 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:32 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:32 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:32 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:32 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:32 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:32 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:32 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:32 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:32 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:32 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:32 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.493181 (min) 0.468936 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.379038 (min) 0.386845 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 3.21674 (min) 5.38114 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.51979 (min) 4.42537 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 130.621 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.4278 (min) 16.5692 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.5987 (min) 34.0207 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000874336 (min) 0.000614774 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:32 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:32 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:32 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:32 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:32 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:32 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:32 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:32 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
43:32 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 0 0 0 0 2]
43:32 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 3 3 3 0]
43:32 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 494.   0.]
 [  0.   0.   0.   0.   0.]
 [152.   0.   0. 346.   0.]
 [ 20.   0. 696.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:32 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:32 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:32 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:32 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:32 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03266527951554923
43:32 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:32 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:32 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:32 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:32 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:32 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:32 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:32 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:32 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:32 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:32 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:32 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:32 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:32 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:32 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:32 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 33
43:32 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:32 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 33 elements
43:32 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:32 INFO    opendrift.models.chemicaldrift:1861: partitioning: [127, 0, 275, 98, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:32 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:32 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:32 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:32 DEBUG   opendrift.models.basemodel:755: Lifting 13 elements to seafloor.
43:32 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:32 INFO    opendrift.models.basemodel:2038: 2024-07-16 00:11:43.064707 - step 82 of 96 - 500 active elements (0 deactivated)
43:32 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:32 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:32 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.888623289578376
43:32 DEBUG   opendrift.models.basemodel:2062:               10.377107988928888 <- longitude -> 10.92924325539775
43:32 DEBUG   opendrift.models.basemodel:2067:               -62.38256003247595   <- z ->   -0.020794921307996983
43:32 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:32 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-16 00:00:00 (before)
                2024-07-16 01:00:00 (after)
43:34 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:34 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:34 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:34 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:34 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:34 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:34 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 66x63x8) for time after (2024-07-16 01:00:00)
43:34 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-16 00:00:00) in space  (linearNDFast)
43:34 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:34 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 01:00:00) in space  (linearNDFast)
43:34 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:34 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-16 00:00:00, weight 0.80) and
                      after (2024-07-16 01:00:00, weight 0.20) in time
43:34 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:34 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.622903040947236 and -59.070767710076524 degrees.
43:34 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.622903040947236 and -59.070767710076524 degrees.
43:34 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:34 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:34 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:34 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:34 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:34 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:34 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:34 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:34 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:34 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:34 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:34 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:34 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:34 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:34 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:34 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:34 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:34 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:34 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:34 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:34 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:34 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:34 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.470979 (min) 0.390055 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.461731 (min) 0.364671 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 2.69532 (min) 4.55901 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.43833 (min) 3.85258 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 128.799 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.3879 (min) 16.5415 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.6461 (min) 34.063 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000979146 (min) 0.00070923 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:34 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:34 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:34 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:34 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:34 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:34 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
43:34 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 3 0 2]
43:34 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 3 0]
43:34 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 496.   0.]
 [  0.   0.   0.   0.   0.]
 [154.   0.   0. 353.   0.]
 [ 21.   0. 729.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:34 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:34 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:34 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:34 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:34 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.02216105938817202
43:34 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:34 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:34 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:34 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:34 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 32
43:34 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:34 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 32 elements
43:34 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:34 INFO    opendrift.models.chemicaldrift:1861: partitioning: [128, 0, 294, 78, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:34 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:34 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:34 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 13 elements to seafloor.
43:34 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:34 INFO    opendrift.models.basemodel:2038: 2024-07-16 00:41:43.064707 - step 83 of 96 - 500 active elements (0 deactivated)
43:34 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:34 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:34 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.88768134133226
43:34 DEBUG   opendrift.models.basemodel:2062:               10.373420143435414 <- longitude -> 10.930654215878663
43:34 DEBUG   opendrift.models.basemodel:2067:               -63.03221254921675   <- z ->   0.0
43:34 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:34 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:34 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:34 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:34 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-16 00:00:00 (before)
                2024-07-16 01:00:00 (after)
43:34 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-16 00:00:00) in space  (linearNDFast)
43:34 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:34 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 01:00:00) in space  (linearNDFast)
43:34 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:34 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-16 00:00:00, weight 0.30) and
                      after (2024-07-16 01:00:00, weight 0.70) in time
43:34 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:34 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.62659087928537 and -59.069356751146714 degrees.
43:34 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.62659087928537 and -59.069356751146714 degrees.
43:34 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:34 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:34 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:34 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:34 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:34 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:34 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:34 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:34 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:34 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:34 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:34 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:34 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:34 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:34 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:34 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:34 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:34 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:34 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:34 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:34 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:34 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:34 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.484764 (min) 0.401649 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.530402 (min) 0.417241 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.58117 (min) 3.5302 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.57041 (min) 3.04453 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 127.489 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.3443 (min) 16.5206 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.5992 (min) 34.1008 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000954836 (min) 0.000548301 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:34 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:34 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:34 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:34 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:34 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:34 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:34 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
43:34 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 0 0]
43:34 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 3 3]
43:34 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 498.   0.]
 [  0.   0.   0.   0.   0.]
 [157.   0.   0. 364.   0.]
 [ 21.   0. 761.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:34 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:34 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:34 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:34 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:34 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01435044165659534
43:34 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:34 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:34 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:34 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:34 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:34 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:34 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 43
43:34 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:34 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 43 elements
43:34 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:34 INFO    opendrift.models.chemicaldrift:1861: partitioning: [129, 0, 320, 51, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:34 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:34 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:34 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:34 DEBUG   opendrift.models.basemodel:755: Lifting 15 elements to seafloor.
43:34 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:34 INFO    opendrift.models.basemodel:2038: 2024-07-16 01:11:43.064707 - step 84 of 96 - 500 active elements (0 deactivated)
43:34 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:34 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:34 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.8867060571596
43:34 DEBUG   opendrift.models.basemodel:2062:               10.367061178738393 <- longitude -> 10.933433559442422
43:34 DEBUG   opendrift.models.basemodel:2067:               -63.54917253538701   <- z ->   -0.06024392752193236
43:34 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:34 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:34 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:34 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:34 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:34 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-16 01:00:00 (before)
                2024-07-16 02:00:00 (after)
43:36 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:36 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:36 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:36 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:36 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:36 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:36 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 67x63x8) for time after (2024-07-16 02:00:00)
43:36 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-16 01:00:00) in space  (linearNDFast)
43:36 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:36 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 02:00:00) in space  (linearNDFast)
43:36 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:36 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-16 01:00:00, weight 0.80) and
                      after (2024-07-16 02:00:00, weight 0.20) in time
43:36 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:36 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.632949854951114 and -59.066577407740844 degrees.
43:36 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.632949854951114 and -59.066577407740844 degrees.
43:36 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:36 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:36 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:36 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:36 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:36 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:36 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:36 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:36 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:36 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:36 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:36 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:36 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:36 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:36 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:36 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:36 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:36 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:36 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:36 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:36 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:36 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:36 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.524855 (min) 0.400875 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.255171 (min) 0.457311 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.905379 (min) 3.12587 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.14114 (min) 2.96387 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 126.642 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.3221 (min) 16.419 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.597 (min) 34.1288 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00104254 (min) 0.000377747 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:36 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
43:36 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:36 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:36 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:36 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:36 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 2
43:36 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2]
43:36 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0]
43:36 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 498.   0.]
 [  0.   0.   0.   0.   0.]
 [159.   0.   0. 378.   0.]
 [ 21.   0. 804.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:36 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:36 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:36 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:36 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:36 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.010989362990465951
43:36 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:36 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:36 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 34
43:36 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:36 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 34 elements
43:36 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:36 INFO    opendrift.models.chemicaldrift:1861: partitioning: [131, 0, 333, 36, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:36 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:36 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:36 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 16 elements to seafloor.
43:36 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:36 INFO    opendrift.models.basemodel:2038: 2024-07-16 01:41:43.064707 - step 85 of 96 - 500 active elements (0 deactivated)
43:36 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:36 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:36 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.887982784846116
43:36 DEBUG   opendrift.models.basemodel:2062:               10.359644068603563 <- longitude -> 10.933494780268344
43:36 DEBUG   opendrift.models.basemodel:2067:               -63.64209064583218   <- z ->   -0.2807450771532338
43:36 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:36 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:36 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:36 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:36 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-16 01:00:00 (before)
                2024-07-16 02:00:00 (after)
43:36 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-16 01:00:00) in space  (linearNDFast)
43:36 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:36 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 02:00:00) in space  (linearNDFast)
43:36 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:36 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-16 01:00:00, weight 0.30) and
                      after (2024-07-16 02:00:00, weight 0.70) in time
43:36 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:36 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.640366960360716 and -59.06651619065024 degrees.
43:36 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.640366960360716 and -59.06651619065024 degrees.
43:36 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:36 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:36 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:36 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:36 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:36 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:36 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:36 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:36 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:36 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:36 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:36 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:36 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:36 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:36 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:36 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:36 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:36 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:36 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:36 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:36 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:36 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:36 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.538584 (min) 0.41841 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.409261 (min) 0.457293 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.877343 (min) 2.35395 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.39675 (min) 3.13677 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 129.468 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.2229 (min) 16.402 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.6891 (min) 34.1678 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.0011099 (min) 0.000341225 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:36 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:36 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:36 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:36 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:36 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:36 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
43:36 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2 2 2 0 2]
43:36 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0 0 0 3 0]
43:36 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 500.   0.]
 [  0.   0.   0.   0.   0.]
 [165.   0.   0. 397.   0.]
 [ 21.   0. 838.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:36 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:36 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:36 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:36 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:36 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.009218844648034043
43:36 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:36 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:36 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 4 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:36 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 46
43:36 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:36 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 46 elements
43:36 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:36 INFO    opendrift.models.chemicaldrift:1861: partitioning: [135, 0, 347, 18, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:36 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:36 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:36 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:36 DEBUG   opendrift.models.basemodel:755: Lifting 27 elements to seafloor.
43:36 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:36 INFO    opendrift.models.basemodel:2038: 2024-07-16 02:11:43.064707 - step 86 of 96 - 500 active elements (0 deactivated)
43:36 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:36 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:36 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.8915225256305
43:36 DEBUG   opendrift.models.basemodel:2062:               10.353262536851597 <- longitude -> 10.93450728156907
43:36 DEBUG   opendrift.models.basemodel:2067:               -64.68103751185701   <- z ->   -0.10312948749803097
43:36 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:36 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:36 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:36 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:36 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:36 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-16 02:00:00 (before)
                2024-07-16 03:00:00 (after)
43:38 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:38 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:38 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:38 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:38 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:38 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:38 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 68x64x8) for time after (2024-07-16 03:00:00)
43:38 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-16 02:00:00) in space  (linearNDFast)
43:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:38 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 03:00:00) in space  (linearNDFast)
43:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:38 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-16 02:00:00, weight 0.80) and
                      after (2024-07-16 03:00:00, weight 0.20) in time
43:38 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.64674848124035 and -59.06550368355221 degrees.
43:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.64674848124035 and -59.06550368355221 degrees.
43:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:38 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:38 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:38 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:38 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.517571 (min) 0.424847 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.493742 (min) 0.488843 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.529025 (min) 1.84168 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.67875 (min) 3.33699 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 132.341 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.2912 (min) 16.3896 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.6817 (min) 34.1414 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00112152 (min) 0.000686885 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:38 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:38 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:38 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:38 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:38 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
43:38 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 2 0 0 2 2]
43:38 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 0 3 3 0 0]
43:38 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 503.   0.]
 [  0.   0.   0.   0.   0.]
 [170.   0.   0. 423.   0.]
 [ 21.   0. 884.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:38 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:38 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:38 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.009388341038082403
43:38 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:38 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:38 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 28
43:38 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 28 elements
43:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:38 INFO    opendrift.models.chemicaldrift:1861: partitioning: [137, 0, 346, 17, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:38 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:38 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:38 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 27 elements to seafloor.
43:38 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:38 INFO    opendrift.models.basemodel:2038: 2024-07-16 02:41:43.064707 - step 87 of 96 - 500 active elements (0 deactivated)
43:38 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:38 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:38 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.89445088792138
43:38 DEBUG   opendrift.models.basemodel:2062:               10.34545277474335 <- longitude -> 10.936314185575242
43:38 DEBUG   opendrift.models.basemodel:2067:               -65.924539482173   <- z ->   -0.4825635870537468
43:38 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:38 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-16 02:00:00 (before)
                2024-07-16 03:00:00 (after)
43:38 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-16 02:00:00) in space  (linearNDFast)
43:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:38 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 03:00:00) in space  (linearNDFast)
43:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:38 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-16 02:00:00, weight 0.30) and
                      after (2024-07-16 03:00:00, weight 0.70) in time
43:38 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.6545582474414 and -59.063696788379126 degrees.
43:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.6545582474414 and -59.063696788379126 degrees.
43:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:38 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:38 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:38 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:38 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.628147 (min) 0.425076 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.396429 (min) 0.488679 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.646978 (min) 1.35014 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.24304 (min) 3.964 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 134.712 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.2993 (min) 16.407 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.6314 (min) 34.1338 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00107725 (min) 0.000641239 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:38 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:38 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:38 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:38 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:38 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:38 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:38 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
43:38 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 2 2 2 0]
43:38 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0 0 0 3]
43:38 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 505.   0.]
 [  0.   0.   0.   0.   0.]
 [175.   0.   0. 447.   0.]
 [ 21.   0. 912.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:38 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:38 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:38 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01201510480930365
43:38 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:38 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:38 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
43:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:38 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:38 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 24
43:38 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 24 elements
43:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:38 INFO    opendrift.models.chemicaldrift:1861: partitioning: [140, 0, 341, 19, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:38 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:38 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:38 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:38 DEBUG   opendrift.models.basemodel:755: Lifting 26 elements to seafloor.
43:38 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:38 INFO    opendrift.models.basemodel:2038: 2024-07-16 03:11:43.064707 - step 88 of 96 - 500 active elements (0 deactivated)
43:38 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:38 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:38 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.897019573499946
43:38 DEBUG   opendrift.models.basemodel:2062:               10.337556035495114 <- longitude -> 10.938786437234583
43:38 DEBUG   opendrift.models.basemodel:2067:               -67.22576904296875   <- z ->   -0.17014505876319935
43:38 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:38 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-16 03:00:00 (before)
                2024-07-16 04:00:00 (after)
43:40 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:40 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:40 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:40 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:40 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:40 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:40 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 69x66x8) for time after (2024-07-16 04:00:00)
43:40 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-16 03:00:00) in space  (linearNDFast)
43:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:40 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 04:00:00) in space  (linearNDFast)
43:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:40 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-16 03:00:00, weight 0.80) and
                      after (2024-07-16 04:00:00, weight 0.20) in time
43:40 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.662454998541705 and -59.06122453345062 degrees.
43:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.662454998541705 and -59.06122453345062 degrees.
43:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:40 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:40 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:40 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:40 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.55943 (min) 0.439748 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.332777 (min) 0.458877 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.499762 (min) 1.26906 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.42959 (min) 4.44867 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 136.578 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.3385 (min) 16.4003 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.7245 (min) 34.1158 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00111088 (min) 0.000448607 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:40 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:40 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:40 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:40 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:40 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
43:40 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 2 0 0 2 0]
43:40 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 0 3 3 0 3]
43:40 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 508.   0.]
 [  0.   0.   0.   0.   0.]
 [181.   0.   0. 471.   0.]
 [ 21.   0. 936.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:40 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:40 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:40 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.014598260367404076
43:40 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:40 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:40 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:40 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 11
43:40 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 11 elements
43:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:40 INFO    opendrift.models.chemicaldrift:1861: partitioning: [143, 0, 333, 24, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:40 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:40 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:40 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 27 elements to seafloor.
43:40 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:40 INFO    opendrift.models.basemodel:2038: 2024-07-16 03:41:43.064707 - step 89 of 96 - 500 active elements (0 deactivated)
43:40 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:40 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:40 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.899768781351845
43:40 DEBUG   opendrift.models.basemodel:2062:               10.326802674103437 <- longitude -> 10.941014880881697
43:40 DEBUG   opendrift.models.basemodel:2067:               -68.04254150390625   <- z ->   -0.4180252001747149
43:40 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:40 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-16 03:00:00 (before)
                2024-07-16 04:00:00 (after)
43:40 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-16 03:00:00) in space  (linearNDFast)
43:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:40 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 04:00:00) in space  (linearNDFast)
43:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:40 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-16 03:00:00, weight 0.30) and
                      after (2024-07-16 04:00:00, weight 0.70) in time
43:40 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.67320834042894 and -59.058996084247134 degrees.
43:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.67320834042894 and -59.058996084247134 degrees.
43:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:40 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:40 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:40 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:40 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.587993 (min) 0.455558 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.146861 (min) 0.470888 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.353522 (min) 1.22427 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.98305 (min) 4.17781 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 138.205 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.2904 (min) 16.378 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.7536 (min) 34.1272 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00116041 (min) 0.000563177 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:40 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:40 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:40 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:40 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:40 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:40 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:40 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:40 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
43:40 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 2 2 2]
43:40 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 0 0 0]
43:40 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 510.   0.]
 [  0.   0.   0.   0.   0.]
 [186.   0.   0. 484.   0.]
 [ 21.   0. 947.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:40 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:40 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:40 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01274889454863361
43:40 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:40 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:40 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:40 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:40 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 13
43:40 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 13 elements
43:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:40 INFO    opendrift.models.chemicaldrift:1861: partitioning: [146, 0, 328, 26, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:40 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:40 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:40 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:40 DEBUG   opendrift.models.basemodel:755: Lifting 29 elements to seafloor.
43:40 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:40 INFO    opendrift.models.basemodel:2038: 2024-07-16 04:11:43.064707 - step 90 of 96 - 500 active elements (0 deactivated)
43:40 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:40 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:40 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.90145165069632
43:40 DEBUG   opendrift.models.basemodel:2062:               10.317379646910801 <- longitude -> 10.944437616052964
43:40 DEBUG   opendrift.models.basemodel:2067:               -68.91726684570312   <- z ->   -0.3641721575087622
43:40 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:40 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-16 04:00:00 (before)
                2024-07-16 05:00:00 (after)
43:42 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:42 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:42 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:42 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:42 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:42 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:42 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 71x69x8) for time after (2024-07-16 05:00:00)
43:42 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-16 04:00:00) in space  (linearNDFast)
43:42 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:42 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 05:00:00) in space  (linearNDFast)
43:42 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:42 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-16 04:00:00, weight 0.80) and
                      after (2024-07-16 05:00:00, weight 0.20) in time
43:42 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:42 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.68263138098432 and -59.055573348313274 degrees.
43:42 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.68263138098432 and -59.055573348313274 degrees.
43:42 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:42 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:42 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:42 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:42 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:42 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:42 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:42 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:42 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:42 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:42 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:42 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:42 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:42 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:42 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:42 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:42 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:42 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:42 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:42 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:42 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.700296 (min) 0.49727 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.205455 (min) 0.516341 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.16748 (min) 1.11054 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.65199 (min) 3.98231 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 139.333 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.1637 (min) 16.5005 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.5957 (min) 34.1626 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000963114 (min) 0.000430327 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:42 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:42 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:42 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:42 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:42 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:42 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:42 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
43:42 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2]
43:42 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0]
43:42 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 510.   0.]
 [  0.   0.   0.   0.   0.]
 [190.   0.   0. 497.   0.]
 [ 21.   0. 960.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:42 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:42 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:42 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:42 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:42 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.011484268724731631
43:42 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:42 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:42 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:42 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 13
43:42 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:42 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 13 elements
43:42 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:42 INFO    opendrift.models.chemicaldrift:1861: partitioning: [150, 0, 321, 29, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:42 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:42 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:42 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 27 elements to seafloor.
43:42 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:42 INFO    opendrift.models.basemodel:2038: 2024-07-16 04:41:43.064707 - step 91 of 96 - 500 active elements (0 deactivated)
43:42 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:42 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:42 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.903249514859226
43:42 DEBUG   opendrift.models.basemodel:2062:               10.312117232365585 <- longitude -> 10.950249442512588
43:42 DEBUG   opendrift.models.basemodel:2067:               -69.4675064086914   <- z ->   -0.3691194293235833
43:42 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:42 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:42 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:42 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:42 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-16 04:00:00 (before)
                2024-07-16 05:00:00 (after)
43:42 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-16 04:00:00) in space  (linearNDFast)
43:42 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:42 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 05:00:00) in space  (linearNDFast)
43:42 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:42 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-16 04:00:00, weight 0.30) and
                      after (2024-07-16 05:00:00, weight 0.70) in time
43:42 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:42 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.68789378500295 and -59.049761511016754 degrees.
43:42 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.68789378500295 and -59.049761511016754 degrees.
43:42 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:42 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:42 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:42 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:42 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:42 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:42 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:42 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:42 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:42 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:42 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:42 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:42 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:42 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:42 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:42 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:42 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:42 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:42 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:42 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:42 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:42 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.704588 (min) 0.520651 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.164533 (min) 0.525496 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.92009 (min) 1.09041 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.5011 (min) 3.91102 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 141.428 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.0469 (min) 16.5249 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.6902 (min) 34.1969 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000914898 (min) 0.000472427 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:42 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:42 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:42 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:42 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:42 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:42 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
43:42 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2]
43:42 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0]
43:42 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 511.   0.]
 [  0.   0.   0.   0.   0.]
 [192.   0.   0. 513.   0.]
 [ 21.   0. 973.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:42 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:42 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:42 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:42 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:42 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.011115560965053898
43:42 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:42 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:42 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:42 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:42 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:42 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9
43:42 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:42 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements
43:42 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:42 INFO    opendrift.models.chemicaldrift:1861: partitioning: [151, 0, 320, 29, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:42 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:42 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:42 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:42 DEBUG   opendrift.models.basemodel:755: Lifting 33 elements to seafloor.
43:42 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:42 INFO    opendrift.models.basemodel:2038: 2024-07-16 05:11:43.064707 - step 92 of 96 - 500 active elements (0 deactivated)
43:42 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:42 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:42 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.90558274436115
43:42 DEBUG   opendrift.models.basemodel:2062:               10.308936221770603 <- longitude -> 10.958050700755964
43:42 DEBUG   opendrift.models.basemodel:2067:               -68.50434290723533   <- z ->   -0.4743102300512322
43:42 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:42 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:42 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:42 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:42 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:42 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-16 05:00:00 (before)
                2024-07-16 06:00:00 (after)
43:44 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:44 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:44 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:44 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:44 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:44 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:44 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 72x70x8) for time after (2024-07-16 06:00:00)
43:44 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-16 05:00:00) in space  (linearNDFast)
43:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:44 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 06:00:00) in space  (linearNDFast)
43:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:44 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-16 05:00:00, weight 0.80) and
                      after (2024-07-16 06:00:00, weight 0.20) in time
43:44 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.69107479933665 and -59.041960253519626 degrees.
43:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.69107479933665 and -59.041960253519626 degrees.
43:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:44 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:44 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:44 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:44 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.733301 (min) 0.53704 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.182309 (min) 0.514484 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.60321 (min) 0.836478 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.33604 (min) 3.44547 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 142.732 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.0214 (min) 16.5238 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.5781 (min) 34.2082 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000918797 (min) 0.000629241 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:44 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:44 DEBUG   opendrift.models.basemodel:750: No elements hit seafloor.
43:44 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:44 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:44 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:44 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:44 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
43:44 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2]
43:44 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0]
43:44 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 511.   0.]
 [  0.   0.   0.   0.   0.]
 [195.   0.   0. 521.   0.]
 [ 21.   0. 982.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:44 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:44 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:44 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.008635296182628661
43:44 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:44 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:44 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 8
43:44 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 8 elements
43:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:44 INFO    opendrift.models.chemicaldrift:1861: partitioning: [154, 0, 315, 31, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:44 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:44 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:44 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 30 elements to seafloor.
43:44 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:44 INFO    opendrift.models.basemodel:2038: 2024-07-16 05:41:43.064707 - step 93 of 96 - 500 active elements (0 deactivated)
43:44 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:44 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:44 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.90790952798416
43:44 DEBUG   opendrift.models.basemodel:2062:               10.303700714693374 <- longitude -> 10.96557796491867
43:44 DEBUG   opendrift.models.basemodel:2067:               -68.70355055125961   <- z ->   -0.5729407717085769
43:44 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:44 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-16 05:00:00 (before)
                2024-07-16 06:00:00 (after)
43:44 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-16 05:00:00) in space  (linearNDFast)
43:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:44 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 06:00:00) in space  (linearNDFast)
43:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:44 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-16 05:00:00, weight 0.30) and
                      after (2024-07-16 06:00:00, weight 0.70) in time
43:44 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.69631030062574 and -59.03443299133713 degrees.
43:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.69631030062574 and -59.03443299133713 degrees.
43:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:44 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:44 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:44 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:44 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.70512 (min) 0.543152 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.200646 (min) 0.549827 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -3.49581 (min) 0.0539467 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.16558 (min) 2.2342 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 144.52 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 10.9657 (min) 16.5266 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.4883 (min) 34.2245 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00102438 (min) 0.0007878 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:44 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:44 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:44 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:44 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:44 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:44 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
43:44 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0]
43:44 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3]
43:44 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 513.   0.]
 [  0.   0.   0.   0.   0.]
 [196.   0.   0. 531.   0.]
 [ 21.   0. 990.   0.   0.]
 [  0.   0.   0.   0.   0.]]
43:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:44 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:44 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:44 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.012309484078458456
43:44 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:44 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:44 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:44 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:44 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 11
43:44 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 11 elements
43:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:44 INFO    opendrift.models.chemicaldrift:1861: partitioning: [153, 0, 313, 34, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:44 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:44 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:44 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:44 DEBUG   opendrift.models.basemodel:755: Lifting 27 elements to seafloor.
43:44 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:44 INFO    opendrift.models.basemodel:2038: 2024-07-16 06:11:43.064707 - step 94 of 96 - 500 active elements (0 deactivated)
43:44 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:44 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:44 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.90966700566323
43:44 DEBUG   opendrift.models.basemodel:2062:               10.298931759559634 <- longitude -> 10.972476476554325
43:44 DEBUG   opendrift.models.basemodel:2067:               -66.4901885063391   <- z ->   -0.1309589779965941
43:44 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:44 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-16 06:00:00 (before)
                2024-07-16 07:00:00 (after)
43:46 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:46 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:46 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:46 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:46 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:46 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:46 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 72x71x8) for time after (2024-07-16 07:00:00)
43:46 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-16 06:00:00) in space  (linearNDFast)
43:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:46 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 07:00:00) in space  (linearNDFast)
43:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:46 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-16 06:00:00, weight 0.80) and
                      after (2024-07-16 07:00:00, weight 0.20) in time
43:46 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.70107926684278 and -59.02753447297745 degrees.
43:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.70107926684278 and -59.02753447297745 degrees.
43:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:46 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:46 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:46 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:46 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.641042 (min) 0.550913 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.246592 (min) 0.59601 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -3.9975 (min) -0.560085 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.988986 (min) 2.32162 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 148.082 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 10.9522 (min) 16.5288 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.3803 (min) 34.2272 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00112749 (min) 0.000907877 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:46 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:46 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:46 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:46 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:46 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:46 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
43:46 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 2 2]
43:46 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 0 0]
43:46 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  513.    0.]
 [   0.    0.    0.    0.    0.]
 [ 202.    0.    0.  543.    0.]
 [  21.    0. 1001.    0.    0.]
 [   0.    0.    0.    0.    0.]]
43:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:46 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:46 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:46 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01544626835583848
43:46 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:46 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:46 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:46 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9
43:46 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements
43:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:46 INFO    opendrift.models.chemicaldrift:1861: partitioning: [159, 0, 301, 40, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:46 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:46 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:46 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 17 elements to seafloor.
43:46 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:46 INFO    opendrift.models.basemodel:2038: 2024-07-16 06:41:43.064707 - step 95 of 96 - 500 active elements (0 deactivated)
43:46 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:46 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:46 DEBUG   opendrift.models.basemodel:2057:               57.58430906195853 <- latitude  -> 57.914472366704764
43:46 DEBUG   opendrift.models.basemodel:2062:               10.281274426359799 <- longitude -> 10.978822734184151
43:46 DEBUG   opendrift.models.basemodel:2067:               -66.3376975207499   <- z ->   -0.20650666239364157
43:46 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:46 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-16 06:00:00 (before)
                2024-07-16 07:00:00 (after)
43:46 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-16 06:00:00) in space  (linearNDFast)
43:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:46 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 07:00:00) in space  (linearNDFast)
43:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:46 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-16 06:00:00, weight 0.30) and
                      after (2024-07-16 07:00:00, weight 0.70) in time
43:46 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.71873660011164 and -59.021188222067835 degrees.
43:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.71873660011164 and -59.021188222067835 degrees.
43:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:46 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:46 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:46 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:46 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.624086 (min) 0.530376 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.265813 (min) 0.607577 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -3.99528 (min) -1.77795 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.543847 (min) 1.99631 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 151.738 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 10.8988 (min) 16.536 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.0132 (min) 34.2425 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000988522 (min) 0.000916872 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:46 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:46 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:46 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:46 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:46 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:46 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:46 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 2
43:46 DEBUG   opendrift.models.chemicaldrift:1452: old species: [3 2]
43:46 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0]
43:46 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  513.    0.]
 [   0.    0.    0.    0.    0.]
 [ 203.    0.    0.  558.    0.]
 [  22.    0. 1010.    0.    0.]
 [   0.    0.    0.    0.    0.]]
43:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:46 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:46 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:46 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.012891304384835127
43:46 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:46 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:46 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:46 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:46 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 3 elements to seafloor.
43:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:46 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
43:46 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
43:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:46 INFO    opendrift.models.chemicaldrift:1861: partitioning: [161, 0, 294, 45, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:46 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:46 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:46 DEBUG   opendrift.models.basemodel:891: to be seeded: 0, already seeded 500
43:46 DEBUG   opendrift.models.basemodel:755: Lifting 16 elements to seafloor.
43:46 DEBUG   opendrift.models.basemodel:2037: ======================================================================
43:46 INFO    opendrift.models.basemodel:2038: 2024-07-16 07:11:43.064707 - step 96 of 96 - 500 active elements (0 deactivated)
43:46 DEBUG   opendrift.models.basemodel:2044: 0 elements scheduled.
43:46 DEBUG   opendrift.models.basemodel:2046: ======================================================================
43:46 DEBUG   opendrift.models.basemodel:2057:               57.58430906195852 <- latitude  -> 57.91918003913447
43:46 DEBUG   opendrift.models.basemodel:2062:               10.263734140500429 <- longitude -> 10.984393239283255
43:46 DEBUG   opendrift.models.basemodel:2067:               -66.4296270102739   <- z ->   -0.05977529128735233
43:46 DEBUG   opendrift.models.basemodel:2068: ---------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
43:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
43:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
43:46 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-07-16 07:00:00 (before)
                2024-07-16 08:00:00 (after)
43:49 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
43:49 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
43:49 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
43:49 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
43:49 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
43:49 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['sea_water_salinity', 'upward_sea_water_velocity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity']
43:49 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 73x73x8) for time after (2024-07-16 08:00:00)
43:49 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-07-16 07:00:00) in space  (linearNDFast)
43:49 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:49 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-07-16 08:00:00) in space  (linearNDFast)
43:49 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
43:49 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-07-16 07:00:00, weight 0.80) and
                      after (2024-07-16 08:00:00, weight 0.20) in time
43:49 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
43:49 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.73627690098122 and -59.0156177148273 degrees.
43:49 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.73627690098122 and -59.0156177148273 degrees.
43:49 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:49 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:49 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
43:49 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:49 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
43:49 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:49 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:49 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
43:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:49 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:49 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:49 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:49 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:49 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:49 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:49 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:49 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:49 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:49 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:49 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:49 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:49 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:49 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:49 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
43:49 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
43:49 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
43:49 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
43:49 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:49 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.564009 (min) 0.495134 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.277283 (min) 0.612424 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -4.08423 (min) -2.38415 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.452243 (min) 1.82533 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7893 (min) 155.369 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 10.8705 (min) 16.542 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 28.0062 (min) 34.2458 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000828245 (min) 0.00101451 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:49 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:49 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:49 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:49 DEBUG   opendrift.models.basemodel:2109: Calling ChemicalDrift.update()
43:49 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
43:49 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
43:49 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
43:49 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2]
43:49 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0]
43:49 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  513.    0.]
 [   0.    0.    0.    0.    0.]
 [ 206.    0.    0.  569.    0.]
 [  22.    0. 1015.    0.    0.]
 [   0.    0.    0.    0.    0.]]
43:49 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
43:49 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:49 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
43:49 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
43:49 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.012932558665305502
43:49 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
43:49 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
43:49 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
43:49 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:49 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:49 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:49 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:49 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:49 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:49 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:49 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:49 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
43:49 DEBUG   opendrift.models.basemodel:755: Lifting 1 elements to seafloor.
43:49 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
43:49 DEBUG   opendrift.models.basemodel:755: Lifting 2 elements to seafloor.
43:49 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:49 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
43:49 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
43:49 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
43:49 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
43:49 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
43:49 INFO    opendrift.models.chemicaldrift:1861: partitioning: [164, 0, 287, 49, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
43:49 DEBUG   opendrift.models.basemodel:1661: Horizontal diffusivity is 0, no random walk.
43:49 DEBUG   opendrift.models.basemodel:2124: 500 active elements (0 deactivated)
43:49 DEBUG   opendrift.models.basemodel:2153: Cleaning up
43:49 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
43:49 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
43:49 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
43:49 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
43:49 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
43:49 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
43:49 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
43:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
43:49 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
43:49 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
43:49 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
43:49 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
43:49 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
43:49 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
43:49 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
43:49 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
43:49 DEBUG   opendrift.models.basemodel:711: No elements hit coastline.
43:49 DEBUG   opendrift.models.basemodel:1710: No elements to deactivate
43:49 DEBUG   opendrift.models.basemodel:95: Changed mode from Mode.Run to Mode.Result

Print and plot results

print('Final speciation:')
for isp,sp in enumerate(o.name_species):
    print ('{:32}: {:>6}'.format(sp,sum(o.elements.specie==isp)))

print('Number of transformations:')
for isp in range(o.nspecies):
    print('{}'.format(['{:>9}'.format(np.int32(item)) for item in o.ntransformations[isp,:]]) )

mass = o.get_property('mass')
mass_d = o.get_property('mass_degraded')
mass_v = o.get_property('mass_volatilized')

m_pre = sum(mass[0][-1])
m_deg = sum(mass_d[0][-1])
m_vol = sum(mass_v[0][-1])
m_tot = m_pre + m_deg + m_vol

print('Mass budget for target chemical:')
print('mass preserved       : {:.3f}'.format(m_pre * 1e-6),' g   {:.3f}'.format(m_pre/m_tot*100),'%')
print('mass degraded        : {:.3f}'.format(m_deg * 1e-6),' g   {:.3f}'.format(m_deg/m_tot*100),'%')
print('mass volatilized     : {:.3f}'.format(m_vol * 1e-6),' g   {:.3f}'.format(m_vol/m_tot*100),'%')

legend=['dissolved', '', 'SPM', 'sediment', '']

o.animation_profile(color='specie',
            markersize='mass',
            markersize_scaling=30,
            alpha=.5,
            vmin=0,vmax=o.nspecies-1,
            legend = legend,
            legend_loc = 3,
            fps = 10
            )

Final speciation:
LMM                             :    164
Humic colloid                   :      0
Particle reversible             :    287
Sediment reversible             :     49
Sediment slowly reversible      :      0
Number of transformations:
['        0', '        0', '        0', '      513', '        0']
['        0', '        0', '        0', '        0', '        0']
['      206', '        0', '        0', '      576', '        0']
['       22', '        0', '     1018', '        0', '        0']
['        0', '        0', '        0', '        0', '        0']
Mass budget for target chemical:
mass preserved       : 0.305  g   30.502 %
mass degraded        : 0.693  g   69.270 %
mass volatilized     : 0.002  g   0.228 %
07:43:49 DEBUG   opendrift.models.basemodel:3044: Saving animation..
07:43:49 INFO    opendrift.models.basemodel:4608: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_0.gif...
07:44:02 DEBUG   opendrift.models.basemodel:4646: MPLBACKEND = agg
07:44:02 DEBUG   opendrift.models.basemodel:4647: DISPLAY = None
07:44:02 DEBUG   opendrift.models.basemodel:4648: Time to save animation: 0:00:12.264417
07:44:02 INFO    opendrift.models.basemodel:3251: Time to make animation: 0:00:12.491171

o.animation(color='specie',
            markersize='mass',
            markersize_scaling=100,
            alpha=.5,
            vmin=0,vmax=o.nspecies-1,
            colorbar=False,
            fast = True,
            legend = legend,
            legend_loc = 3,
            fps=10
            )

44:02 DEBUG   opendrift.models.basemodel:2365: Setting up map: corners=None, fast=True, lscale=None
44:02 WARNING opendrift.models.basemodel:2411: Plotting fast. This will make your plots less accurate.
44:03 DEBUG   opendrift.models.basemodel:3044: Saving animation..
44:03 INFO    opendrift.models.basemodel:4608: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_1.gif...
45:02 DEBUG   opendrift.models.basemodel:4646: MPLBACKEND = agg
45:02 DEBUG   opendrift.models.basemodel:4647: DISPLAY = None
45:02 DEBUG   opendrift.models.basemodel:4648: Time to save animation: 0:00:58.485776
45:02 INFO    opendrift.models.basemodel:3037: Time to make animation: 0:01:00.258196

o.plot_mass(legend = legend,
            time_unit = 'hours',
            title = 'Chemical mass budget')

dissolved : 0.0594105g (19.47750402602443%)
SPM : 0.21370996874999998g (70.06399166358943%)
sediment : 0.031900646484374996g (10.458504310386145%)
/root/project/opendrift/models/chemicaldrift.py:3006: UserWarning: set_ticklabels() should only be used with a fixed number of ticks, i.e. after set_ticks() or using a FixedLocator.
  ax.axes.get_xaxis().set_ticklabels(np.round(ax.axes.get_xticks() * time_conversion_factor))

Total running time of the script: (3 minutes 34.813 seconds)

Gallery generated by Sphinx-Gallery